Query psy14128
Match_columns 393
No_of_seqs 285 out of 1739
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:15:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3383 Uncharacterized anaero 100.0 3.2E-53 6.8E-58 425.5 21.4 347 16-369 252-751 (978)
2 cd02774 MopB_Res-Cmplx1_Nad11- 100.0 4.3E-42 9.4E-47 337.8 20.4 319 9-354 8-363 (366)
3 PRK09130 NADH dehydrogenase su 100.0 4.7E-41 1E-45 354.6 23.9 288 73-369 270-606 (687)
4 cd02773 MopB_Res-Cmplx1_Nad11 100.0 3.3E-37 7.2E-42 306.3 22.3 278 74-355 52-373 (375)
5 PRK09939 putative oxidoreducta 100.0 4.3E-36 9.3E-41 318.4 24.7 295 60-360 93-562 (759)
6 PRK07860 NADH dehydrogenase su 100.0 3.1E-35 6.7E-40 316.1 24.3 295 62-369 263-653 (797)
7 PRK09129 NADH dehydrogenase su 100.0 6.2E-35 1.3E-39 314.4 25.7 301 63-367 258-640 (776)
8 cd02752 MopB_Formate-Dh-Na-lik 100.0 4.5E-35 9.7E-40 305.9 21.5 286 67-363 46-443 (649)
9 cd02772 MopB_NDH-1_NuoG2 MopB_ 100.0 1.7E-34 3.7E-39 290.5 24.7 287 67-355 46-412 (414)
10 TIGR01701 Fdhalpha-like oxidor 100.0 6.1E-34 1.3E-38 303.8 25.5 294 62-362 86-550 (743)
11 TIGR01973 NuoG NADH-quinone ox 100.0 4.1E-34 8.9E-39 300.0 21.6 287 62-353 255-603 (603)
12 cd02767 MopB_ydeP The MopB_yde 100.0 2.1E-33 4.6E-38 291.1 24.6 257 67-327 56-426 (574)
13 KOG2282|consensus 100.0 1.8E-33 3.9E-38 272.4 17.8 300 2-392 250-550 (708)
14 TIGR01553 formate-DH-alph form 100.0 1.3E-32 2.9E-37 299.3 23.9 295 62-361 91-656 (1009)
15 cd02766 MopB_3 The MopB_3 CD i 100.0 9.7E-33 2.1E-37 283.8 21.1 277 67-363 47-428 (501)
16 cd02756 MopB_Arsenite-Ox Arsen 100.0 1.7E-32 3.7E-37 287.4 20.7 285 73-361 115-565 (676)
17 cd02768 MopB_NADH-Q-OR-NuoG2 M 100.0 3E-32 6.4E-37 271.7 20.0 285 67-355 46-384 (386)
18 cd02754 MopB_Nitrate-R-NapA-li 100.0 1E-31 2.2E-36 280.6 23.6 291 67-362 46-487 (565)
19 TIGR01591 Fdh-alpha formate de 100.0 5.6E-31 1.2E-35 280.3 25.8 297 67-369 45-486 (671)
20 cd02762 MopB_1 The MopB_1 CD i 100.0 2.1E-31 4.5E-36 276.6 21.8 289 67-357 46-476 (539)
21 cd02753 MopB_Formate-Dh-H Form 100.0 3.3E-31 7.2E-36 273.6 22.8 289 67-362 46-441 (512)
22 cd02759 MopB_Acetylene-hydrata 100.0 7.3E-31 1.6E-35 268.6 22.0 276 67-362 46-428 (477)
23 TIGR01706 NAPA periplasmic nit 100.0 1.4E-30 3E-35 282.1 25.3 297 62-362 82-573 (830)
24 PRK13532 nitrate reductase cat 100.0 1.6E-30 3.4E-35 282.0 24.7 297 62-362 82-573 (830)
25 cd02750 MopB_Nitrate-R-NarG-li 100.0 1.1E-30 2.4E-35 266.1 21.4 279 62-361 51-432 (461)
26 cd02755 MopB_Thiosulfate-R-lik 100.0 1.1E-29 2.4E-34 258.4 22.5 282 62-362 40-430 (454)
27 cd02771 MopB_NDH-1_NuoG2-N7 Mo 100.0 7E-30 1.5E-34 261.2 20.4 286 67-367 46-439 (472)
28 PRK08166 NADH dehydrogenase su 100.0 9.3E-30 2E-34 276.4 20.4 286 67-367 270-666 (847)
29 cd02764 MopB_PHLH The MopB_PHL 100.0 3.7E-29 8.1E-34 258.8 20.4 290 68-364 92-483 (524)
30 TIGR02693 arsenite_ox_L arseni 100.0 9.9E-29 2.2E-33 265.7 21.1 285 73-361 113-574 (806)
31 PF00384 Molybdopterin: Molybd 100.0 2.6E-29 5.7E-34 253.7 14.0 280 75-355 1-431 (432)
32 TIGR03479 DMSO_red_II_alp DMSO 100.0 4.8E-28 1E-32 264.3 24.6 293 62-361 105-643 (912)
33 cd02751 MopB_DMSOR-like The Mo 100.0 2.1E-28 4.6E-33 257.5 19.0 289 67-362 39-506 (609)
34 cd02765 MopB_4 The MopB_4 CD i 100.0 4.2E-28 9.2E-33 252.9 20.8 275 62-362 40-485 (567)
35 cd00368 Molybdopterin-Binding 100.0 6.8E-28 1.5E-32 238.9 20.6 285 67-355 46-372 (374)
36 PRK15488 thiosulfate reductase 100.0 2.1E-27 4.6E-32 255.8 24.0 293 62-362 83-529 (759)
37 cd02758 MopB_Tetrathionate-Ra 99.9 8.1E-27 1.8E-31 248.3 22.1 220 62-284 68-404 (735)
38 COG0243 BisC Anaerobic dehydro 99.9 2.5E-27 5.4E-32 255.4 17.5 290 62-361 82-530 (765)
39 cd02763 MopB_2 The MopB_2 CD i 99.9 7.3E-26 1.6E-30 237.9 26.0 213 67-284 46-336 (679)
40 cd02770 MopB_DmsA-EC This CD ( 99.9 1.4E-26 3E-31 244.0 20.3 290 67-362 51-514 (617)
41 TIGR00509 bisC_fam molybdopter 99.9 9.6E-27 2.1E-31 250.9 19.3 290 65-362 34-513 (770)
42 TIGR03129 one_C_dehyd_B formyl 99.9 4.1E-26 8.8E-31 229.9 19.6 286 62-355 30-419 (421)
43 cd02769 MopB_DMSOR-BSOR-TMAOR 99.9 1.4E-26 3E-31 243.5 16.7 289 66-362 37-506 (609)
44 TIGR02166 dmsA_ynfE anaerobic 99.9 4.6E-26 9.9E-31 246.9 20.0 295 62-362 89-562 (797)
45 cd02757 MopB_Arsenate-R This C 99.9 1.2E-25 2.7E-30 232.2 21.6 277 67-362 48-458 (523)
46 PRK14990 anaerobic dimethyl su 99.9 6E-26 1.3E-30 246.2 18.5 296 62-362 104-579 (814)
47 cd02761 MopB_FmdB-FwdB The Mop 99.9 3.9E-25 8.4E-30 222.5 18.9 269 74-354 42-412 (415)
48 TIGR02164 torA trimethylamine- 99.9 4.8E-25 1E-29 239.1 19.4 295 63-362 75-564 (822)
49 PRK15102 trimethylamine N-oxid 99.9 9.8E-25 2.1E-29 236.7 18.6 294 64-362 79-567 (825)
50 cd02760 MopB_Phenylacetyl-CoA- 99.9 8.5E-24 1.8E-28 225.8 24.3 222 62-285 43-425 (760)
51 PRK14991 tetrathionate reducta 99.9 5.8E-22 1.3E-26 217.5 23.9 222 62-284 142-544 (1031)
52 cd02774 MopB_Res-Cmplx1_Nad11- 99.9 2.9E-22 6.4E-27 197.3 6.1 185 1-198 146-342 (366)
53 PRK08493 NADH dehydrogenase su 99.8 2.2E-20 4.8E-25 198.7 14.8 194 93-293 297-578 (819)
54 KOG2282|consensus 99.8 3E-20 6.4E-25 181.0 7.5 194 1-198 393-601 (708)
55 TIGR01580 narG respiratory nit 99.8 1.4E-17 3.1E-22 180.3 23.1 150 62-214 92-287 (1235)
56 COG1029 FwdB Formylmethanofura 99.7 3.5E-16 7.5E-21 147.5 17.6 260 59-323 30-352 (429)
57 COG1034 NuoG NADH dehydrogenas 99.7 2E-17 4.2E-22 172.1 9.4 294 67-369 264-609 (693)
58 PRK09130 NADH dehydrogenase su 99.6 2.1E-16 4.5E-21 167.7 4.7 189 1-196 362-572 (687)
59 cd02773 MopB_Res-Cmplx1_Nad11 99.3 5E-12 1.1E-16 125.8 8.2 106 1-106 143-248 (375)
60 COG1034 NuoG NADH dehydrogenas 98.7 2.4E-09 5.1E-14 112.2 -0.0 192 1-198 362-577 (693)
61 cd02768 MopB_NADH-Q-OR-NuoG2 M 98.6 9.9E-08 2.1E-12 95.2 9.3 104 1-105 146-256 (386)
62 TIGR01973 NuoG NADH-quinone ox 98.5 1.9E-07 4.1E-12 98.7 6.5 106 1-106 360-472 (603)
63 PRK07860 NADH dehydrogenase su 98.2 1.3E-05 2.8E-10 87.3 12.6 91 1-92 374-471 (797)
64 PRK08166 NADH dehydrogenase su 97.8 0.00012 2.6E-09 80.5 10.2 41 1-42 369-409 (847)
65 cd00368 Molybdopterin-Binding 97.7 6.4E-05 1.4E-09 74.5 7.2 43 1-44 154-196 (374)
66 COG3383 Uncharacterized anaero 97.6 0.00038 8.3E-09 72.6 11.1 62 1-63 418-486 (978)
67 PRK09129 NADH dehydrogenase su 97.6 3E-05 6.4E-10 84.5 3.3 105 1-106 368-499 (776)
68 cd02772 MopB_NDH-1_NuoG2 MopB_ 97.6 0.00015 3.2E-09 73.2 7.8 45 1-46 150-195 (414)
69 PRK08493 NADH dehydrogenase su 97.5 0.00025 5.5E-09 76.7 7.7 43 1-43 368-410 (819)
70 cd02766 MopB_3 The MopB_3 CD i 97.2 0.0033 7.2E-08 65.1 11.8 42 1-43 155-196 (501)
71 cd02761 MopB_FmdB-FwdB The Mop 97.2 0.00047 1E-08 69.4 5.0 90 2-92 130-251 (415)
72 TIGR01591 Fdh-alpha formate de 97.0 0.0021 4.6E-08 69.0 8.5 43 1-44 153-195 (671)
73 cd02750 MopB_Nitrate-R-NarG-li 96.8 0.015 3.3E-07 59.6 12.6 60 1-61 168-233 (461)
74 cd02771 MopB_NDH-1_NuoG2-N7 Mo 96.8 0.0027 5.8E-08 65.2 6.9 32 1-32 143-174 (472)
75 cd02759 MopB_Acetylene-hydrata 96.7 0.026 5.7E-07 58.0 13.6 59 1-60 158-223 (477)
76 cd02753 MopB_Formate-Dh-H Form 96.6 0.006 1.3E-07 63.3 7.8 59 1-60 154-218 (512)
77 cd02752 MopB_Formate-Dh-Na-lik 96.6 0.0085 1.8E-07 63.8 8.9 61 1-61 167-233 (649)
78 cd02755 MopB_Thiosulfate-R-lik 96.1 0.059 1.3E-06 55.2 11.9 192 1-214 154-371 (454)
79 cd02767 MopB_ydeP The MopB_yde 96.1 0.027 5.8E-07 59.4 9.1 41 1-42 161-201 (574)
80 PF00384 Molybdopterin: Molybd 95.4 0.014 3.1E-07 58.9 4.0 44 1-44 109-152 (432)
81 cd02754 MopB_Nitrate-R-NapA-li 95.2 0.068 1.5E-06 56.2 8.4 59 1-59 155-220 (565)
82 cd02764 MopB_PHLH The MopB_PHL 95.1 0.65 1.4E-05 48.5 15.2 60 1-60 194-266 (524)
83 TIGR03129 one_C_dehyd_B formyl 94.7 0.13 2.8E-06 51.7 8.5 41 3-44 137-185 (421)
84 PRK09939 putative oxidoreducta 94.7 0.024 5.3E-07 61.5 3.3 41 1-42 206-246 (759)
85 COG5013 NarG Nitrate reductase 94.5 0.13 2.8E-06 55.3 7.9 139 85-226 157-307 (1227)
86 TIGR01701 Fdhalpha-like oxidor 93.1 0.086 1.9E-06 57.4 3.9 40 1-41 196-235 (743)
87 TIGR03479 DMSO_red_II_alp DMSO 92.8 0.13 2.8E-06 57.3 4.9 45 1-46 222-266 (912)
88 PRK00945 acetyl-CoA decarbonyl 92.0 2.1 4.5E-05 37.8 10.4 42 170-215 107-148 (171)
89 cd02762 MopB_1 The MopB_1 CD i 91.2 0.24 5.1E-06 51.9 4.4 58 1-59 154-223 (539)
90 PRK15488 thiosulfate reductase 90.8 0.3 6.6E-06 53.3 4.9 59 1-59 194-259 (759)
91 TIGR01553 formate-DH-alph form 90.7 0.3 6.4E-06 54.9 4.8 43 1-44 219-261 (1009)
92 cd02765 MopB_4 The MopB_4 CD i 90.6 0.4 8.6E-06 50.6 5.4 58 1-59 157-220 (567)
93 TIGR00315 cdhB CO dehydrogenas 89.3 3.7 8E-05 35.9 9.5 36 68-103 19-54 (162)
94 PRK13532 nitrate reductase cat 87.1 0.84 1.8E-05 50.5 5.1 60 1-60 204-270 (830)
95 cd02760 MopB_Phenylacetyl-CoA- 86.8 0.96 2.1E-05 49.4 5.3 58 1-59 171-235 (760)
96 COG1029 FwdB Formylmethanofura 85.7 2.3 5E-05 41.6 6.5 83 234-322 69-157 (429)
97 cd02757 MopB_Arsenate-R This C 84.7 1.3 2.7E-05 46.3 4.7 60 1-61 160-227 (523)
98 cd02758 MopB_Tetrathionate-Ra 82.5 1.2 2.6E-05 48.5 3.6 44 1-44 209-255 (735)
99 cd02751 MopB_DMSOR-like The Mo 81.9 1.2 2.7E-05 47.3 3.4 41 3-44 169-217 (609)
100 TIGR01706 NAPA periplasmic nit 81.9 2.1 4.5E-05 47.4 5.2 44 1-44 204-248 (830)
101 cd02763 MopB_2 The MopB_2 CD i 81.7 2.3 5E-05 45.8 5.4 42 1-43 153-194 (679)
102 TIGR02166 dmsA_ynfE anaerobic 78.6 1.7 3.6E-05 47.8 3.2 44 1-44 212-258 (797)
103 PRK08322 acetolactate synthase 78.1 4.9 0.00011 42.1 6.4 109 90-210 180-295 (547)
104 PRK14990 anaerobic dimethyl su 77.6 2.1 4.6E-05 47.2 3.6 44 1-44 229-275 (814)
105 PRK07418 acetolactate synthase 77.6 6.2 0.00014 42.0 7.1 111 90-209 208-323 (616)
106 COG3367 Uncharacterized conser 77.3 21 0.00046 34.7 9.7 156 85-260 79-238 (339)
107 COG0028 IlvB Thiamine pyrophos 76.1 8.8 0.00019 40.4 7.5 41 235-279 191-231 (550)
108 cd02770 MopB_DmsA-EC This CD ( 73.1 3.1 6.7E-05 44.4 3.3 45 1-46 164-211 (617)
109 PRK14138 NAD-dependent deacety 72.5 5.7 0.00012 37.2 4.6 58 2-62 177-237 (244)
110 PRK14138 NAD-dependent deacety 72.4 7 0.00015 36.6 5.2 42 166-210 173-214 (244)
111 PF00205 TPP_enzyme_M: Thiamin 71.4 5 0.00011 33.6 3.6 41 235-279 2-42 (137)
112 cd01410 SIRT7 SIRT7: Eukaryoti 71.4 5.6 0.00012 36.2 4.1 42 166-210 150-191 (206)
113 TIGR00315 cdhB CO dehydrogenas 71.0 7.1 0.00015 34.1 4.5 40 236-279 19-58 (162)
114 PRK00481 NAD-dependent deacety 69.3 9.7 0.00021 35.5 5.4 41 167-210 173-213 (242)
115 PTZ00409 Sir2 (Silent Informat 68.6 10 0.00022 36.0 5.5 60 166-228 194-256 (271)
116 PRK06048 acetolactate synthase 68.0 20 0.00043 37.7 8.0 42 234-279 197-238 (561)
117 PRK06965 acetolactate synthase 66.7 19 0.00042 38.1 7.6 41 235-279 212-252 (587)
118 cd01413 SIR2_Af2 SIR2_Af2: Arc 64.6 6.9 0.00015 36.0 3.3 42 166-210 166-207 (222)
119 PRK08322 acetolactate synthase 64.2 26 0.00057 36.6 8.1 41 235-279 187-227 (547)
120 PRK07418 acetolactate synthase 63.8 27 0.00058 37.3 8.1 41 235-279 215-255 (616)
121 PRK08273 thiamine pyrophosphat 63.6 26 0.00055 37.3 7.9 38 235-278 199-236 (597)
122 PTZ00408 NAD-dependent deacety 63.4 17 0.00036 34.0 5.7 39 169-210 170-208 (242)
123 COG1880 CdhB CO dehydrogenase/ 63.1 38 0.00082 29.4 7.2 33 69-105 28-60 (170)
124 PRK00945 acetyl-CoA decarbonyl 63.1 13 0.00028 32.8 4.6 39 236-277 26-64 (171)
125 CHL00099 ilvB acetohydroxyacid 62.3 31 0.00067 36.5 8.2 40 235-278 208-247 (585)
126 cd01409 SIRT4 SIRT4: Eukaryoti 62.1 9.5 0.00021 36.0 3.9 42 166-210 199-240 (260)
127 PLN02573 pyruvate decarboxylas 61.9 24 0.00053 37.3 7.3 42 234-279 214-255 (578)
128 PRK06154 hypothetical protein; 61.8 28 0.00061 36.7 7.8 41 235-279 205-245 (565)
129 PRK08155 acetolactate synthase 61.0 29 0.00063 36.5 7.7 41 235-279 202-242 (564)
130 PRK08199 thiamine pyrophosphat 61.0 35 0.00077 35.8 8.3 42 235-280 195-236 (557)
131 PRK06456 acetolactate synthase 60.7 31 0.00068 36.3 7.9 41 235-279 198-238 (572)
132 TIGR00118 acolac_lg acetolacta 60.5 29 0.00064 36.4 7.6 42 235-280 192-233 (558)
133 PRK08979 acetolactate synthase 60.3 32 0.0007 36.3 7.9 41 235-279 197-237 (572)
134 PRK08527 acetolactate synthase 60.2 28 0.00061 36.6 7.4 41 235-279 194-234 (563)
135 KOG4166|consensus 59.8 14 0.0003 37.2 4.6 39 234-272 288-326 (675)
136 PRK07789 acetolactate synthase 59.7 29 0.00064 36.9 7.5 41 235-279 222-262 (612)
137 PRK15102 trimethylamine N-oxid 58.3 11 0.00024 41.6 4.2 41 172-214 468-508 (825)
138 TIGR01504 glyox_carbo_lig glyo 58.2 36 0.00079 36.1 7.9 41 235-279 193-233 (588)
139 TIGR03394 indol_phenyl_DC indo 57.5 29 0.00064 36.3 6.9 42 234-279 191-232 (535)
140 PRK07979 acetolactate synthase 57.1 35 0.00077 36.0 7.5 41 235-279 197-237 (574)
141 cd01407 SIR2-fam SIR2 family o 56.7 14 0.0003 33.8 3.9 41 167-210 163-203 (218)
142 TIGR03457 sulphoacet_xsc sulfo 56.5 31 0.00068 36.4 7.0 42 235-280 187-228 (579)
143 PRK06725 acetolactate synthase 56.3 41 0.00089 35.5 7.8 42 235-280 205-246 (570)
144 COG3962 Acetolactate synthase 56.0 44 0.00094 34.2 7.3 36 237-276 222-257 (617)
145 PRK07710 acetolactate synthase 55.8 44 0.00095 35.2 8.0 41 235-279 206-246 (571)
146 PRK07282 acetolactate synthase 55.1 42 0.00091 35.4 7.7 41 235-279 201-241 (566)
147 PRK08617 acetolactate synthase 54.2 55 0.0012 34.3 8.4 41 235-279 192-232 (552)
148 PRK06276 acetolactate synthase 54.2 47 0.001 35.1 7.9 42 235-280 194-235 (586)
149 TIGR03393 indolpyr_decarb indo 53.9 42 0.00091 35.1 7.4 40 235-278 196-235 (539)
150 PRK09107 acetolactate synthase 53.1 58 0.0013 34.6 8.4 108 91-209 197-313 (595)
151 PRK08978 acetolactate synthase 53.0 54 0.0012 34.3 8.1 41 235-279 187-227 (548)
152 PRK09124 pyruvate dehydrogenas 52.9 55 0.0012 34.5 8.2 39 235-279 192-230 (574)
153 PTZ00408 NAD-dependent deacety 52.9 23 0.0005 33.0 4.7 37 2-41 171-207 (242)
154 PRK06466 acetolactate synthase 52.2 44 0.00096 35.2 7.3 42 235-280 197-238 (574)
155 TIGR02720 pyruv_oxi_spxB pyruv 52.0 55 0.0012 34.6 8.0 39 235-279 191-229 (575)
156 cd01412 SIRT5_Af1_CobB SIRT5_A 51.6 18 0.00039 33.1 3.8 42 166-210 159-200 (224)
157 PRK08611 pyruvate oxidase; Pro 51.4 59 0.0013 34.3 8.1 39 236-280 195-233 (576)
158 PRK06882 acetolactate synthase 51.4 45 0.00097 35.2 7.2 41 235-279 197-237 (574)
159 PRK07586 hypothetical protein; 50.7 28 0.00061 36.1 5.5 42 235-280 188-229 (514)
160 TIGR02164 torA trimethylamine- 50.6 22 0.00048 39.4 4.9 41 172-214 465-505 (822)
161 TIGR00509 bisC_fam molybdopter 50.4 15 0.00032 40.3 3.5 43 1-44 165-215 (770)
162 PRK09107 acetolactate synthase 49.6 75 0.0016 33.7 8.5 43 235-279 203-245 (595)
163 PRK06546 pyruvate dehydrogenas 49.3 63 0.0014 34.2 7.9 39 235-279 192-230 (578)
164 PRK00481 NAD-dependent deacety 49.1 29 0.00063 32.2 4.8 58 2-62 176-236 (242)
165 PRK07525 sulfoacetaldehyde ace 48.9 57 0.0012 34.5 7.5 41 235-279 191-231 (588)
166 PRK07524 hypothetical protein; 48.8 62 0.0014 33.7 7.7 109 90-209 185-298 (535)
167 PRK10886 DnaA initiator-associ 48.6 1.8E+02 0.0039 26.2 9.6 38 169-209 107-144 (196)
168 PRK12474 hypothetical protein; 47.8 32 0.00069 35.8 5.4 41 235-279 192-232 (518)
169 COG0243 BisC Anaerobic dehydro 47.7 23 0.0005 38.8 4.5 61 1-62 197-266 (765)
170 PLN02470 acetolactate synthase 47.4 77 0.0017 33.5 8.2 39 235-279 206-244 (585)
171 cd02756 MopB_Arsenite-Ox Arsen 46.8 15 0.00033 39.6 2.8 43 1-43 221-280 (676)
172 PRK07092 benzoylformate decarb 46.3 33 0.00072 35.7 5.2 42 235-280 197-238 (530)
173 PLN02470 acetolactate synthase 45.9 1E+02 0.0023 32.5 8.9 107 91-209 200-312 (585)
174 cd01408 SIRT1 SIRT1: Eukaryoti 45.4 29 0.00063 32.2 4.1 40 167-210 171-210 (235)
175 PRK08273 thiamine pyrophosphat 45.0 71 0.0015 33.9 7.5 104 91-209 193-302 (597)
176 PRK06457 pyruvate dehydrogenas 44.5 77 0.0017 33.2 7.7 39 235-279 186-224 (549)
177 PRK06546 pyruvate dehydrogenas 44.1 1.3E+02 0.0028 31.8 9.3 102 90-209 185-292 (578)
178 PF00205 TPP_enzyme_M: Thiamin 43.8 13 0.00029 30.9 1.5 35 69-103 4-38 (137)
179 PF10419 TFIIIC_sub6: TFIIIC s 43.7 19 0.00041 22.9 1.8 20 77-96 9-28 (35)
180 PRK08611 pyruvate oxidase; Pro 43.4 1.1E+02 0.0025 32.2 8.8 104 91-209 188-295 (576)
181 PRK05333 NAD-dependent deacety 43.3 43 0.00094 32.0 5.1 41 167-210 210-250 (285)
182 PRK11269 glyoxylate carboligas 42.9 39 0.00084 35.8 5.1 41 236-280 195-235 (591)
183 PTZ00409 Sir2 (Silent Informat 42.8 27 0.00058 33.2 3.5 38 1-41 197-234 (271)
184 PRK05333 NAD-dependent deacety 42.7 37 0.00079 32.5 4.5 56 2-62 213-273 (285)
185 cd01411 SIR2H SIR2H: Uncharact 42.3 34 0.00073 31.5 4.0 41 166-210 166-206 (225)
186 cd00296 SIR2 SIR2 superfamily 42.3 34 0.00073 31.0 4.1 42 166-210 164-205 (222)
187 cd02769 MopB_DMSOR-BSOR-TMAOR 42.2 25 0.00055 37.4 3.6 41 2-43 169-218 (609)
188 TIGR02418 acolac_catab acetola 41.8 40 0.00087 35.2 5.0 41 235-279 186-226 (539)
189 TIGR00173 menD 2-succinyl-5-en 41.4 41 0.00089 34.1 4.9 39 234-277 201-239 (432)
190 COG1737 RpiR Transcriptional r 41.1 85 0.0018 29.8 6.7 84 109-209 129-212 (281)
191 PRK08266 hypothetical protein; 40.4 83 0.0018 32.8 7.1 107 90-209 189-295 (542)
192 PRK09124 pyruvate dehydrogenas 40.3 1E+02 0.0022 32.5 7.8 102 91-209 186-293 (574)
193 PRK06112 acetolactate synthase 40.0 42 0.00091 35.4 4.9 42 235-280 204-245 (578)
194 PRK07524 hypothetical protein; 39.4 50 0.0011 34.5 5.3 39 235-279 192-230 (535)
195 cd05006 SIS_GmhA Phosphoheptos 39.4 2.5E+02 0.0055 24.2 10.1 115 91-209 14-136 (177)
196 TIGR02720 pyruv_oxi_spxB pyruv 36.9 1E+02 0.0023 32.5 7.2 106 90-209 184-295 (575)
197 PRK09259 putative oxalyl-CoA d 36.4 57 0.0012 34.4 5.1 42 235-280 204-245 (569)
198 cd01408 SIRT1 SIRT1: Eukaryoti 36.4 50 0.0011 30.6 4.2 37 1-41 173-209 (235)
199 PRK08266 hypothetical protein; 36.4 63 0.0014 33.7 5.5 40 235-280 196-235 (542)
200 TIGR03254 oxalate_oxc oxalyl-C 36.3 57 0.0012 34.2 5.1 41 235-279 197-237 (554)
201 PRK08327 acetolactate synthase 36.1 56 0.0012 34.4 5.0 41 235-279 211-251 (569)
202 cd01412 SIRT5_Af1_CobB SIRT5_A 33.9 66 0.0014 29.4 4.6 37 2-41 163-199 (224)
203 COG5013 NarG Nitrate reductase 33.3 28 0.00061 38.3 2.2 34 244-277 531-564 (1227)
204 KOG1185|consensus 32.5 72 0.0016 32.8 4.8 41 235-279 208-248 (571)
205 PRK05858 hypothetical protein; 32.4 70 0.0015 33.5 5.0 41 235-279 194-234 (542)
206 PF06258 Mito_fiss_Elm1: Mitoc 32.1 2.5E+02 0.0055 27.1 8.5 124 63-210 131-258 (311)
207 PF13241 NAD_binding_7: Putati 31.8 62 0.0013 25.5 3.6 33 173-211 8-40 (103)
208 COG3961 Pyruvate decarboxylase 31.3 1.3E+02 0.0028 31.3 6.4 117 89-210 188-310 (557)
209 PF02552 CO_dh: CO dehydrogena 31.3 54 0.0012 28.8 3.3 23 235-257 25-47 (167)
210 PRK07064 hypothetical protein; 31.2 81 0.0018 32.9 5.3 38 235-279 194-231 (544)
211 PF08937 DUF1863: MTH538 TIR-l 30.8 58 0.0013 26.9 3.4 40 169-210 68-108 (130)
212 PRK08155 acetolactate synthase 30.6 58 0.0013 34.2 4.1 108 91-209 196-310 (564)
213 PTZ00410 NAD-dependent SIR2; P 30.6 55 0.0012 32.3 3.6 41 166-210 200-240 (349)
214 PRK15482 transcriptional regul 30.4 2.3E+02 0.005 26.7 7.9 39 168-209 179-217 (285)
215 PRK13936 phosphoheptose isomer 29.5 3.6E+02 0.0078 24.0 8.5 37 170-209 110-146 (197)
216 COG4821 Uncharacterized protei 29.5 4.1E+02 0.0088 24.3 8.4 41 166-209 99-139 (243)
217 TIGR00118 acolac_lg acetolacta 29.1 62 0.0013 34.0 4.0 108 91-209 186-300 (558)
218 TIGR03457 sulphoacet_xsc sulfo 29.0 63 0.0014 34.1 4.0 111 91-209 181-298 (579)
219 PRK07092 benzoylformate decarb 28.6 60 0.0013 33.8 3.7 110 90-209 190-306 (530)
220 COG1052 LdhA Lactate dehydroge 27.0 84 0.0018 30.7 4.2 90 110-208 146-236 (324)
221 PRK14991 tetrathionate reducta 26.9 67 0.0014 36.6 3.9 43 1-43 283-328 (1031)
222 TIGR03127 RuMP_HxlB 6-phospho 26.8 4.1E+02 0.009 22.8 8.8 92 92-209 16-107 (179)
223 TIGR03394 indol_phenyl_DC indo 26.7 65 0.0014 33.7 3.6 36 169-209 266-301 (535)
224 TIGR02693 arsenite_ox_L arseni 26.7 52 0.0011 36.4 2.9 43 1-43 218-276 (806)
225 TIGR00173 menD 2-succinyl-5-en 26.6 55 0.0012 33.2 2.9 34 171-210 274-307 (432)
226 PRK11557 putative DNA-binding 26.4 2.4E+02 0.0052 26.4 7.2 39 168-209 172-210 (278)
227 COG0028 IlvB Thiamine pyrophos 26.0 78 0.0017 33.4 4.0 104 94-209 188-298 (550)
228 PRK06048 acetolactate synthase 25.8 80 0.0017 33.2 4.1 108 91-209 192-306 (561)
229 COG3962 Acetolactate synthase 25.6 85 0.0019 32.2 3.9 36 169-209 293-329 (617)
230 TIGR03254 oxalate_oxc oxalyl-C 25.5 81 0.0018 33.1 4.1 108 91-209 191-299 (554)
231 PRK11302 DNA-binding transcrip 25.4 3E+02 0.0065 25.7 7.6 38 169-209 173-210 (284)
232 PRK08617 acetolactate synthase 25.3 75 0.0016 33.3 3.8 108 91-209 186-300 (552)
233 PRK09259 putative oxalyl-CoA d 25.1 83 0.0018 33.1 4.1 109 90-209 197-306 (569)
234 PRK07586 hypothetical protein; 25.1 76 0.0016 32.9 3.7 88 90-182 181-273 (514)
235 cd05014 SIS_Kpsf KpsF-like pro 25.1 3.6E+02 0.0077 21.5 7.8 41 166-209 42-82 (128)
236 PRK11269 glyoxylate carboligas 24.9 85 0.0018 33.3 4.1 110 91-209 188-303 (591)
237 PRK08199 thiamine pyrophosphat 24.6 82 0.0018 33.0 3.9 112 90-209 188-306 (557)
238 PF02826 2-Hacid_dh_C: D-isome 24.2 89 0.0019 27.3 3.5 91 110-208 36-127 (178)
239 PRK07449 2-succinyl-5-enolpyru 23.8 2.5E+02 0.0053 29.5 7.3 102 100-209 212-318 (568)
240 TIGR01580 narG respiratory nit 23.8 97 0.0021 35.8 4.4 55 234-289 518-577 (1235)
241 PRK06154 hypothetical protein; 23.5 93 0.002 32.8 4.1 107 90-209 198-311 (565)
242 PF04198 Sugar-bind: Putative 23.3 59 0.0013 30.5 2.3 101 85-189 53-162 (255)
243 PRK06965 acetolactate synthase 23.0 96 0.0021 32.8 4.1 108 92-209 207-321 (587)
244 PRK07064 hypothetical protein; 22.9 2.5E+02 0.0054 29.3 7.1 108 90-209 187-296 (544)
245 PRK06276 acetolactate synthase 22.8 94 0.002 32.9 4.0 108 91-209 188-302 (586)
246 PRK07979 acetolactate synthase 22.6 96 0.0021 32.7 4.0 108 91-209 191-305 (574)
247 PRK12474 hypothetical protein; 22.5 92 0.002 32.4 3.7 86 90-182 185-277 (518)
248 PRK06112 acetolactate synthase 22.3 1E+02 0.0022 32.6 4.0 109 91-210 198-318 (578)
249 PRK08327 acetolactate synthase 22.1 90 0.002 32.9 3.6 106 90-209 204-310 (569)
250 COG1880 CdhB CO dehydrogenase/ 22.1 1.7E+02 0.0037 25.4 4.6 36 237-276 28-63 (170)
251 PRK07789 acetolactate synthase 21.9 1E+02 0.0023 32.7 4.1 108 91-209 216-330 (612)
252 PRK08978 acetolactate synthase 21.8 1.1E+02 0.0023 32.1 4.1 109 90-209 180-295 (548)
253 PRK07525 sulfoacetaldehyde ace 21.7 1E+02 0.0023 32.6 4.0 111 91-209 185-302 (588)
254 PRK08527 acetolactate synthase 21.4 1.1E+02 0.0023 32.3 4.0 110 91-209 188-302 (563)
255 PRK06882 acetolactate synthase 21.4 1.1E+02 0.0023 32.3 4.0 109 92-209 192-305 (574)
256 PRK06725 acetolactate synthase 21.4 1.1E+02 0.0023 32.4 4.0 109 90-209 198-313 (570)
257 PRK08979 acetolactate synthase 21.0 1.1E+02 0.0024 32.2 4.1 108 91-209 191-305 (572)
258 KOG1467|consensus 20.7 1.6E+02 0.0034 30.4 4.7 44 166-214 354-398 (556)
259 TIGR01504 glyox_carbo_lig glyo 20.6 1E+02 0.0022 32.7 3.7 108 91-209 187-302 (588)
260 TIGR02418 acolac_catab acetola 20.6 1.2E+02 0.0025 31.8 4.0 108 91-209 180-294 (539)
261 CHL00099 ilvB acetohydroxyacid 20.5 1.1E+02 0.0024 32.4 3.9 108 91-209 202-316 (585)
262 PRK07282 acetolactate synthase 20.3 1.2E+02 0.0025 32.0 4.0 110 91-209 195-309 (566)
No 1
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=100.00 E-value=3.2e-53 Score=425.49 Aligned_cols=347 Identities=21% Similarity=0.248 Sum_probs=294.7
Q ss_pred cchhhhhhhHhhhhhcCCcEEEEEcCCCC-cccchhhh------cccHHHHHHHHccC--chHHhhhhhcCCCEEEeCCc
Q psy14128 16 FEAPLFNARIRKGYLTNELDVAYIGPKVD-LRYDYEHL------GESADLIKQLASGS--HPFSKKLSAAKKPLIVVGAD 86 (393)
Q Consensus 16 ~e~plln~RiRk~~~~~~~~v~~ig~~~d-~~~~~~~~------g~~~~~l~~i~~~~--~~~~~~l~r~~~PlI~~g~~ 86 (393)
.|+.+-..||+|. ++-|..|.+|+.++ |+..-..+ ..-++....+++|+ +.|+++.+|+++||||.|+.
T Consensus 252 ~e~~mr~~rikkt--kTvC~yCGvGCsf~vwtkgreilkv~p~~e~paN~~~tCVKGkFgwdfvns~dRit~PlIR~~~~ 329 (978)
T COG3383 252 IEAAMRETRIKKT--KTVCTYCGVGCSFEVWTKGREILKVQPDPEGPANRISTCVKGKFGWDFVNSRDRITKPLIREGDR 329 (978)
T ss_pred hhhhhhhhhhccc--ceeccccCCceeEEEEecCceEEEeccCCCCCCCccceeeeceecccccCChhHhcccccccCCc
Confidence 4777778899985 36888999998665 66553222 22344577889997 78999999999999999999
Q ss_pred eeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHHHH-hCCCCccccCCCCccchhhhhhhcc---
Q psy14128 87 MLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLLNK-LGSEDLYTEYAFPLEGAGTDLRANY--- 160 (393)
Q Consensus 87 ~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~~~-lGt~nid~~~~~~~~~~~~~~~~~~--- 160 (393)
|.+++|+||+..+|++|.++ +||++++|++.|+++||||.|++|||+|+ |||||+|++.++|.++....+..++
T Consensus 330 f~evsWeEAl~~vA~rl~~ik~~yg~dsigfI~Ssk~TNEE~Yl~QKLaR~v~gtNNVDncsR~CqsPa~~gL~rTvG~g 409 (978)
T COG3383 330 FREVSWEEALDLVASRLREIKEKYGGDSIGFIASSKCTNEENYLMQKLARQVFGTNNVDNCSRYCQSPATDGLFRTVGSG 409 (978)
T ss_pred eeeeeHHHHHHHHHHHHHHHHHHhCccceeeeccCCCCcHHHHHHHHHHHHHhccCCcccchhhccCcccccchheeecc
Confidence 99999999999999999754 58999999999999999999999999999 9999999999999876665555443
Q ss_pred cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcccc--c--cc--cCCCHHHHHHHHc--
Q psy14128 161 LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYD--Y--EH--LGESADLIKQLAS-- 232 (393)
Q Consensus 161 ~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~--~--~~--lg~~~~~l~~l~~-- 232 (393)
+.+.++++++.+|++|+||+||.++||++..|+|+|.+.+|+|+||+|+|...... . +| .|++...|.+++.
T Consensus 410 ~dsgsi~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~~pkpGtd~a~l~Avakyi 489 (978)
T COG3383 410 ADSGSIEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHPKPGTDLAWLTAVAKYI 489 (978)
T ss_pred CCCCCHHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHhhhcccCCCCCccHHHHHHHHHHH
Confidence 45678999999999999999999999999999999987689999999997544422 2 33 3788887766531
Q ss_pred ---c---------------------------------------HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHH
Q psy14128 233 ---G---------------------------------------SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQ 270 (393)
Q Consensus 233 ---g---------------------------------------~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~ 270 (393)
| +..+|+.|+++++..|+||+|++||..|++...++.|
T Consensus 490 ideGl~D~~Fi~er~~~f~d~~~~l~~~tle~~E~~TGv~~e~l~~~A~~~~~a~~~ai~w~mGvTqh~~GsdTs~aisN 569 (978)
T COG3383 490 IDEGLHDEAFIRERVDWFEDYAKSLAPFTLEYAEKATGVPAEDLRKAAEMIAEAKSVAILWGMGVTQHSGGSDTSTAISN 569 (978)
T ss_pred HhCCcchHHHHHhhcccHHHHHHHhhccCHHHHHhhcCCCHHHHHHHHHHHhccCceEEEEEccccccccCccHHHHHHH
Confidence 1 5778999999999999999999999999999999999
Q ss_pred HHHHhCCCcccCCC-------ccccccccccC---------------------------------CCcHHHHhhc----c
Q psy14128 271 LAAKVTCESDHLGE-------SADLIKQLASG---------------------------------SHAFSKKLAA----A 306 (393)
Q Consensus 271 l~~~tg~~~~~~~~-------~~n~~G~~~~g---------------------------------g~~~~~~~~~----~ 306 (393)
|++.|| ++++++. ..|.+|+.++| |++..+|+++ .
T Consensus 570 Lll~TG-N~Grpg~G~~PLRGhNNVQGa~DmGslP~~LPGyq~isdd~~R~kFE~~wGv~i~~ePGl~~~~Mlea~~~G~ 648 (978)
T COG3383 570 LLLLTG-NYGRPGAGAYPLRGHNNVQGACDMGSLPDVLPGYQPISDDAVRAKFEEAWGVKIPREPGLDNPEMLEAIEEGK 648 (978)
T ss_pred HHHHhc-ccCCCCCCcCcccccCccccccccccCcccCCCccccccHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHhcCc
Confidence 999998 5665555 45777888777 7888888864 6
Q ss_pred cCcEEEEcCCCC-CCCChhhHH-------------------------------------------HHhhhhhhccCCCCC
Q psy14128 307 KKPLIVVGADML-SRSDGAAVL-------------------------------------------ALVQQLAAKVTCESD 342 (393)
Q Consensus 307 ~~al~v~g~np~-~~p~~~~v~-------------------------------------------~~vq~~~~av~~~g~ 342 (393)
.+++||+|+||. +.||.++|+ ||+|+++++.+|+|+
T Consensus 649 ~~amYv~GEd~~~sd~dt~~v~~aL~~ldflVVqD~FLteTA~yAdVvLPas~slEKdGTFtNtERRiQrlykvleP~gd 728 (978)
T COG3383 649 LKAMYVVGEDPLLSDPDTNHVRAALEALDFLVVQDLFLTETANYADVVLPASASLEKDGTFTNTERRIQRLYKVLEPLGD 728 (978)
T ss_pred eeEEEEecccceecCCChHHHHHHHhhcceEEeehhhhhcccccceEEeecCccccccCceechHHHHHHHHHHhccccC
Confidence 899999999998 999999887 999999999999999
Q ss_pred CCcchHHHHHHHHHHHhccccCCCCCC
Q psy14128 343 VPCDWKVLNILQKAASQVAALDIGYKP 369 (393)
Q Consensus 343 ~~~dw~i~~~l~~~a~~~g~~d~g~~~ 369 (393)
+||||+| ++..|+++| .+|.|..
T Consensus 729 srpDW~I---iq~vA~~lG-~~wnY~h 751 (978)
T COG3383 729 SRPDWEI---IQEVANALG-AGWNYSH 751 (978)
T ss_pred CCccHHH---HHHHHHHhc-CCCCCCC
Confidence 9999999 688999999 5788854
No 2
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=100.00 E-value=4.3e-42 Score=337.76 Aligned_cols=319 Identities=24% Similarity=0.318 Sum_probs=252.8
Q ss_pred EEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCCcccchhhhcccHHHHHHHHccCchHHhhhhhcCCCEEEeCC-ce
Q psy14128 9 LIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHPFSKKLSAAKKPLIVVGA-DM 87 (393)
Q Consensus 9 lvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d~~~~~~~~g~~~~~l~~i~~~~~~~~~~l~r~~~PlI~~g~-~~ 87 (393)
=+|||+|.+ . ++.+|..|=|..+-..+-.++.+.-.. .+++.++ +|+++|||+.++ +|
T Consensus 8 ~~Gcni~v~-----------~--r~~~V~Ri~p~~n~~vNe~wicdKgRf-------~yd~l~~-~Rl~~Plir~~g~~~ 66 (366)
T cd02774 8 SLGSNIRVD-----------I--KGNEILRILPKINDELNEEWISDKIRF-------SYDSLKY-QRIKTPLLKLSNNSF 66 (366)
T ss_pred CCCCCeEEE-----------E--ECCEEEEEecCCCCCCCCceecCCccc-------ccccccc-ccCCCCcEECCCCcE
Confidence 368888887 2 355777777744433322222222111 2456666 899999999877 99
Q ss_pred eeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCCCcc
Q psy14128 88 LSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIA 167 (393)
Q Consensus 88 ~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (393)
.+.+|++|+..++++|.+. .++++++++|+++|+|++|+++||++.+||+|+|++..++......++...+.++++++
T Consensus 67 ~~~sW~eAl~~ia~~l~~~--~~~~i~~i~g~~~t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~~~~~~~~sl~ 144 (366)
T cd02774 67 LEIGWKTAFKFLNKFILLK--KFSKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDLENYLFNNSLK 144 (366)
T ss_pred EEcCHHHHHHHHHHHHhhc--CcccEEEEECCCCCHHHHHHHHHHHHHhCCCceeccccccccccccccccCCccCCCHH
Confidence 9999999999999999653 26789999999999999999999999999999998765432111122234466788999
Q ss_pred CccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCccccccccCCCHHHHHHHHccHHHHHHHHHhCCCC
Q psy14128 168 GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKP 247 (393)
Q Consensus 168 ~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~~~~lg~~~~~l~~l~~g~~~~a~~l~~a~~~ 247 (393)
|+++||+||+||+|+++|+|+++.|+|++++++++||++|||+.+++|+..|++..+..+..+++|.+.+++.|.++|+|
T Consensus 145 die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~~~~~~~~~l~~~~~~l~~~l~g~~~~~~~L~~ak~p 224 (366)
T cd02774 145 NLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKFDTTYPSKHIGLSLNTLLKILEGKHLFCKQLKKSKKP 224 (366)
T ss_pred HHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCccccCCcHHHHCcCHHHHHHHHhcchHHHHHHhcCCCC
Confidence 99999999999999999999999999999977799999999988999999999999999999999999999999999999
Q ss_pred EEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccccccccCCCcHHHHhhcccCcEEEEcCCCCCCCC---hh
Q psy14128 248 LIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSD---GA 324 (393)
Q Consensus 248 ~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G~~~~gg~~~~~~~~~~~~al~v~g~np~~~p~---~~ 324 (393)
+||+|.++.+++++..++..+.+|+..++..+..+...+|+ ++++|-..-. .....++.++++.+|.++++ ..
T Consensus 225 ~Ii~G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~an~--a~~lG~~~~~--~~~~~~~~~l~~~~~~~~~~l~~~~ 300 (366)
T cd02774 225 LIIIGSSFSLRKNYSFIISKLKNFSSNNENNFNFLNIISNS--LYYLGIKKFN--SNNKKNLSNLYYIKETNFQKFNKNN 300 (366)
T ss_pred EEEEChHHhCCCCHHHHHHHHHHHHHhhcCceEEeeHHHHH--HHhcCCCCcc--chhcccceEEEEcCCchhhcccCCC
Confidence 99999999999999999999999999999889999888887 5555521000 11124556666666654432 11
Q ss_pred h----------------HH-----------------HHhhhhhhccCCCCCCCcchHHHHHHH
Q psy14128 325 A----------------VL-----------------ALVQQLAAKVTCESDVPCDWKVLNILQ 354 (393)
Q Consensus 325 ~----------------v~-----------------~~vq~~~~av~~~g~~~~dw~i~~~l~ 354 (393)
. |+ +|+|.+++++.|||++|+||+||+.|.
T Consensus 301 fviy~g~~~~~~a~~AdviLP~a~~~Ek~gt~vN~EGr~Q~~~~a~~~~g~ar~dw~Il~~L~ 363 (366)
T cd02774 301 FVIYQGHHFLNLANNSNLILPSKTFFEKEALYLNLEGILQKTKKILSFKENIKSDDNIIFSLI 363 (366)
T ss_pred EEEEecccCccchhhCcEEecCCcccccCceEECCCCcceeehhccCCccccCcHhHHHHHHh
Confidence 1 11 999999999999999999999987764
No 3
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=4.7e-41 Score=354.63 Aligned_cols=288 Identities=39% Similarity=0.579 Sum_probs=245.3
Q ss_pred hhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCC-Cccc
Q psy14128 73 LSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAF-PLEG 151 (393)
Q Consensus 73 l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~-~~~~ 151 (393)
.+|+++||||.+++|++.+|++|+..++++|.+. .++++++++|++.++|++|++++|++.+|++|+|++... ++.
T Consensus 270 ~~RL~~PliR~~G~~~~iSWdEAl~~iA~kL~~~--~~~~ia~i~g~~~~~E~~~~lkkl~~~lGs~nid~~~~~~~~~- 346 (687)
T PRK09130 270 RQRLDRPYVRKNGKLVPASWDEAFAAIAAKIKGT--PGEKIAAIAGDLADVESMFALKDLMQKLGSSNLDCRQDGAKLD- 346 (687)
T ss_pred ccccCCccEecCCceeecCHHHHHHHHHHHHHhc--CCCeEEEEECCCCCHHHHHHHHHHHHHcCCCccccccchhhhh-
Confidence 5799999999999999999999999999999754 478999999999999999999999999999999975421 111
Q ss_pred hhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCccccccccCCCHHHHHHHH
Q psy14128 152 AGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLA 231 (393)
Q Consensus 152 ~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~~~~lg~~~~~l~~l~ 231 (393)
......|.++.+++|+++||+||+||+||+.++|+++.|+|++.+++++||++|||+.++++++.++|++...+.++.
T Consensus 347 --~~~~~~~~~~~si~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~~~t~~~~~lg~~~~~l~~l~ 424 (687)
T PRK09130 347 --PSLRASYLFNTTIAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADLTYPYEYLGAGPDTLADLA 424 (687)
T ss_pred --hhhhccCCCCCCHHHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCccccCccccccCCCHHHHHHHH
Confidence 111333556678999999999999999999999999999999985444699999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCC------CcccCCCccccccccccC------CCcH
Q psy14128 232 SGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC------ESDHLGESADLIKQLASG------SHAF 299 (393)
Q Consensus 232 ~g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~------~~~~~~~~~n~~G~~~~g------g~~~ 299 (393)
+|.+++++.|+++++++|++|+++.++.+|.+.+.++.+|+..+|. ++..+...+|.+|+.++| |.++
T Consensus 425 ~g~~~~a~~l~~Ak~~~Ii~G~g~~~~~~g~~~~~ai~~La~~~G~~~~~~~G~~~L~~~an~~ga~dlG~~p~~~g~~~ 504 (687)
T PRK09130 425 SGKHEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVGAVRDGWNGFNVLHTAASRVGGLDLGFVPGEGGKDA 504 (687)
T ss_pred HhHHHHHHHHhcCCCcEEEECCcccccccHHHHHHHHHHHHHHhCCccCCCCCeEecCCchHHHHHHHhcCCCCcccccH
Confidence 9999999999999999999999999999999999999999999872 345566667888887665 6778
Q ss_pred HHHh-hcccCcEEEEcCCCC-CCCChhh-HH---------------------------------HHhhhhhhccCCCCCC
Q psy14128 300 SKKL-AAAKKPLIVVGADML-SRSDGAA-VL---------------------------------ALVQQLAAKVTCESDV 343 (393)
Q Consensus 300 ~~~~-~~~~~al~v~g~np~-~~p~~~~-v~---------------------------------~~vq~~~~av~~~g~~ 343 (393)
.+++ .+.++++|++|+||+ ..|.... ++ +|+|..++++.|||++
T Consensus 505 ~~ll~~g~ik~l~llgadp~~~~~~~~~fvV~qd~~~t~ta~~ADVVLP~a~~~Ek~Gt~~n~egrvq~~~~av~p~gea 584 (687)
T PRK09130 505 AEMLESGALDVLYLLGADEIDISKGKSAFVIYQGHHGDRGAHRADVILPGAAYTEKSGTYVNTEGRVQLANRAVFPPGEA 584 (687)
T ss_pred HHHHhCCCcCEEEEecCChhhcccccCCEEEEecccCCccHhhCCEEEcCCCccccCCeEECCCCceEEeccccCCCccc
Confidence 8888 467899999999998 4443221 11 9999999999999999
Q ss_pred CcchHHHHHHHHHHHhccccCCCCCC
Q psy14128 344 PCDWKVLNILQKAASQVAALDIGYKP 369 (393)
Q Consensus 344 ~~dw~i~~~l~~~a~~~g~~d~g~~~ 369 (393)
|+||+| |..+++++|. ++.|.+
T Consensus 585 r~dw~I---l~~La~~lg~-~~~~~~ 606 (687)
T PRK09130 585 KEDWAI---LRALSDVLGK-TLPYDS 606 (687)
T ss_pred chHHHH---HHHHHHHhCC-CCCCCC
Confidence 999999 5666677774 566654
No 4
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=100.00 E-value=3.3e-37 Score=306.30 Aligned_cols=278 Identities=45% Similarity=0.640 Sum_probs=233.1
Q ss_pred hhcCCCEEEeCCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchh
Q psy14128 74 SAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAG 153 (393)
Q Consensus 74 ~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~ 153 (393)
+|+++||+|.+++|++.+|++|+..++++|.+.. +++++++.|+..++|+.|+++||++.+|++|+++...+|...
T Consensus 52 ~Rl~~Plir~~g~~~~isWdeAl~~ia~~l~~~~--~~si~~~~g~~~~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~-- 127 (375)
T cd02773 52 QRLDKPYIRKNGKLKPATWEEALAAIAKALKGVK--PDEIAAIAGDLADVESMVALKDLLNKLGSENLACEQDGPDLP-- 127 (375)
T ss_pred cccCCCcEeeCCcEeEcCHHHHHHHHHHHHhhcC--cCcEEEEeCCCCCHHHHHHHHHHHHHhCCCcccccccccccc--
Confidence 7999999999999999999999999999997643 578999999999999999999999999999998877666542
Q ss_pred hhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCccccccccCCCHHHHHHHHcc
Q psy14128 154 TDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASG 233 (393)
Q Consensus 154 ~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~~~~lg~~~~~l~~l~~g 233 (393)
..+...+.++.++.|+++||+||+||+|+.+++|+++.|+|++.+++|+||++|||+.+.++...++|++...+..+++|
T Consensus 128 ~~~~~~~~~~~~~~di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~~g~d~~~l~~l~~~ 207 (375)
T cd02773 128 ADLRSNYLFNTTIAGIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDHLGTDAKTLQDIASG 207 (375)
T ss_pred cccccccccCCCHHHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccccchhhccCCCcHHHHHHHHHh
Confidence 23333344556789999999999999999999999999999987667999999999988888877789999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCC------CcccCCCccccccccccCCCc--HHHHhhc
Q psy14128 234 SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC------ESDHLGESADLIKQLASGSHA--FSKKLAA 305 (393)
Q Consensus 234 ~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~------~~~~~~~~~n~~G~~~~gg~~--~~~~~~~ 305 (393)
.+++++.|+++++++|++|+++.++.++...+.++.+|+..+|. ++..+...+|++|++++|-.. ....-++
T Consensus 208 ~~~~a~~l~~a~~~~ii~g~g~~~~~~~~~~~~~i~~l~~~~g~~~~~~~g~~~~~~~~n~~g~~~~g~~~~~~~~~~~g 287 (375)
T cd02773 208 KHPFSKALKDAKKPMIIVGSGALARKDGAAILAAVAKLAKKNGVVREGWNGFNVLHRAASRVGALDLGFVPGAGAIRKSG 287 (375)
T ss_pred HHHHHHHHhcCCCcEEEecchhhccccHHHHHHHHHHHHHHhCCcCCCCceEeecchHHHHHHhhccCCCCCcchhhccC
Confidence 99999999999999999999999999999999999999999863 245666678899988776211 1111145
Q ss_pred ccCcEEEEcCCCCC-CCCh------------------hhHH-----------------HHhhhhhhccCCCCCCCcchHH
Q psy14128 306 AKKPLIVVGADMLS-RSDG------------------AAVL-----------------ALVQQLAAKVTCESDVPCDWKV 349 (393)
Q Consensus 306 ~~~al~v~g~np~~-~p~~------------------~~v~-----------------~~vq~~~~av~~~g~~~~dw~i 349 (393)
.++++|++|+||+. .|.. ++|+ +|+|.++++++|||++|+||+|
T Consensus 288 ~i~~l~v~g~np~~~~~~~~~~~~v~~d~~~~~ta~~AdvvLP~~~~~E~~g~~~n~~~~~~~~~~~v~p~~~~~~d~~i 367 (375)
T cd02773 288 PPKVLYLLGADEIDITPIPKDAFVVYQGHHGDRGAQIADVILPGAAYTEKSGTYVNTEGRVQQTRKAVSPPGDAREDWKI 367 (375)
T ss_pred CccEEEEcCCCccccCCCCCCCEEEEECCCCCcchhhCcEEecCCCcccCCCeEEcCCCeEEeeccccCCCccchHHHHH
Confidence 78999999999983 3311 1111 9999999999999999999999
Q ss_pred HHHHHH
Q psy14128 350 LNILQK 355 (393)
Q Consensus 350 ~~~l~~ 355 (393)
|..|++
T Consensus 368 ~~~l~~ 373 (375)
T cd02773 368 LRALSE 373 (375)
T ss_pred HHHHHh
Confidence 665554
No 5
>PRK09939 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.3e-36 Score=318.38 Aligned_cols=295 Identities=16% Similarity=0.155 Sum_probs=237.2
Q ss_pred HHHHccCchHHhhhhhcCCCEEEe--CCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhC
Q psy14128 60 KQLASGSHPFSKKLSAAKKPLIVV--GADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLG 137 (393)
Q Consensus 60 ~~i~~~~~~~~~~l~r~~~PlI~~--g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lG 137 (393)
.++..-.+.+.++.+|+++||+|. ++.|++++|++|+..++++|.+.. +++++++|.|++.+||+.|++|+|++.+|
T Consensus 93 ~~l~~~~~~~l~~~~RL~~Pl~r~~g~~~~~~ISWdEAl~~Ia~~L~~i~-~p~~i~~y~sg~~snE~~yl~q~f~r~~G 171 (759)
T PRK09939 93 QSLLTWGDHELEAAGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYS-DPNQVEFYTSGRTSNEAAFLYQLFAREYG 171 (759)
T ss_pred HHHhhhcccccCCCCcccCCeEecCCCCcEEEccHHHHHHHHHHHHHhhc-CCCeEEEEeeCCchHHHHHHHHHHHHHhC
Confidence 334444566788899999999996 478999999999999999998754 58999999999999999999999999999
Q ss_pred CCCccccCCCCccchhhhhhhcc---cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCc-
Q psy14128 138 SEDLYTEYAFPLEGAGTDLRANY---LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDL- 213 (393)
Q Consensus 138 t~nid~~~~~~~~~~~~~~~~~~---~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~- 213 (393)
|+|++.+...|+.+...++..++ .++.+++|+++||+||+||+||.++||.+..+++++. ++|+|||+|||+.+.
T Consensus 172 tnn~~~~s~~C~~~~~~~l~~~~G~g~~t~~l~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~-~rGakiIvIDPr~~~g 250 (759)
T PRK09939 172 SNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHNPGTNHPRMLTSLRALV-KRGAKMIAINPLQERG 250 (759)
T ss_pred CcccCCCCCCCchHHHHHHHHhcCCCCCCCCHHHHhhCCEEEEeCCChHHHHHHHHHHHHHHH-HCCCEEEEECCCCccc
Confidence 99998777788765444444322 3456799999999999999999999999999999886 689999999995431
Q ss_pred -----------------c--cccc----ccCCCHHHHHHHHc--------------------------------------
Q psy14128 214 -----------------R--YDYE----HLGESADLIKQLAS-------------------------------------- 232 (393)
Q Consensus 214 -----------------~--~~~~----~lg~~~~~l~~l~~-------------------------------------- 232 (393)
+ ..+. .+|+|.+++..|+.
T Consensus 251 l~rft~p~~~~~~~~~~ta~~Ad~~l~irPGtD~ALl~gm~~~li~~~~~~~~~~~~~~~D~~FI~~~t~Gfe~~~~~v~ 330 (759)
T PRK09939 251 LERFTAPQNPFEMLTNSETQLASAYYNVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVL 330 (759)
T ss_pred ccccccccccchhccccchhhhCeeeCCCCChHHHHHHHHHHHHHHCCCcccccccccccCHHHHHHhcCCHHHHHHHHh
Confidence 1 1223 34667665433210
Q ss_pred ----------------cHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc-------cCCCccccc
Q psy14128 233 ----------------GSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD-------HLGESADLI 289 (393)
Q Consensus 233 ----------------g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~-------~~~~~~n~~ 289 (393)
.++++|+.|+++++++|+||+|+.||.+|...+.++.+|+.++| +++ ++...+|.+
T Consensus 331 ~~~~e~v~~~tGv~~~~I~~~A~~~a~a~~~ii~~gmGitqh~~G~~~v~~i~nL~lltG-niGrpGaG~~plrG~~Nvq 409 (759)
T PRK09939 331 NSEWKDIERISGLSQTQIAELADAYAAAERTIICYGMGITQHEHGTQNVQQLVNLLLMKG-NIGKPGAGICPLRGHSNVQ 409 (759)
T ss_pred hCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEEeCCcccccCcHHHHHHHHHHHHHHhC-CCCCCCcccccCcCcccCC
Confidence 15788999999999999999999999999999999999999998 454 444556777
Q ss_pred cccccC-------------------------CCcHHHHh----hcccCcEEEEcCCCC-CCCChhhHH------------
Q psy14128 290 KQLASG-------------------------SHAFSKKL----AAAKKPLIVVGADML-SRSDGAAVL------------ 327 (393)
Q Consensus 290 G~~~~g-------------------------g~~~~~~~----~~~~~al~v~g~np~-~~p~~~~v~------------ 327 (393)
|.+.+| |.+..+++ ++.+|++|++|.||+ +.||...++
T Consensus 410 G~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~G~~~~~~~~a~~~G~ikal~~~G~Np~~s~Pd~~~~~~AL~~ld~~V~~ 489 (759)
T PRK09939 410 GDRTVGITEKPSAEFLARLGERYGFTPPHAPGHAAIASMQAICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVHV 489 (759)
T ss_pred CccccCCCCCCCHHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCceEEEEeCCChhccCcCHHHHHHHHhcCCcEEEE
Confidence 776654 45555555 456999999999998 999987755
Q ss_pred ------------------------------------------HHhhhhhhccCCCCC-CCcchHHHHHHHHHHHhc
Q psy14128 328 ------------------------------------------ALVQQLAAKVTCESD-VPCDWKVLNILQKAASQV 360 (393)
Q Consensus 328 ------------------------------------------~~vq~~~~av~~~g~-~~~dw~i~~~l~~~a~~~ 360 (393)
++||..+++++|||+ +|+||+|+ +++|.++
T Consensus 490 d~~ln~~~~~t~~~dvVLP~~~~~E~d~~~~g~q~~t~~~~~~~v~~s~~~~~P~g~~~~se~~I~---~~lA~~~ 562 (759)
T PRK09939 490 ATKLNRSHLLTARHSYILPVLGRSEIDMQKSGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVV---AGIAQAA 562 (759)
T ss_pred eeeecCcccchhhhcEEecCCCccccccccCCCceeEEEcCCceEEccCCCCCCCCccccCHHHHH---HHHHHHh
Confidence 688999999999996 79999995 5555555
No 6
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=3.1e-35 Score=316.13 Aligned_cols=295 Identities=22% Similarity=0.267 Sum_probs=238.3
Q ss_pred HHccC--chHHhhhhhcCCCEEE-eCCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHH-hC
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIV-VGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNK-LG 137 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~-~g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~-lG 137 (393)
+.+|+ +++..+.+|+++||+| .+++|++.+|++|++.++++|.+.. ++++++.|++.++|+.|+++||++. +|
T Consensus 263 C~KGr~~~~~~~~~dRL~~PliR~~~g~f~~iSWdEAld~ia~kL~~i~---~~ia~~~s~~~t~Ee~y~~~kl~r~~lg 339 (797)
T PRK07860 263 CDKGRWAFTYATQPDRITTPLVRDEDGELEPASWSEALAVAARGLAAAR---GRVGVLVGGRLTVEDAYAYAKFARVALG 339 (797)
T ss_pred ChhhhhhhhhhccccccCCceEEcCCCceEEcCHHHHHHHHHHHHHhhh---ccEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 44553 5677889999999999 4678999999999999999998753 3899999999999999999999995 99
Q ss_pred CCCccccCCCCccchhhhhhh--cc--cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCc
Q psy14128 138 SEDLYTEYAFPLEGAGTDLRA--NY--LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDL 213 (393)
Q Consensus 138 t~nid~~~~~~~~~~~~~~~~--~~--~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~ 213 (393)
|+|+|++.+.+ .....++.. .+ ..+.+++|+++||+||+||+|+.+++|+++.|++++.+++|+||++|||+.+.
T Consensus 340 t~nid~~~r~~-~~~~~~~~~~~~~g~~~~~~~~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~ 418 (797)
T PRK07860 340 TNDIDFRARPH-SAEEADFLAARVAGRGLGVTYADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATR 418 (797)
T ss_pred CCccccccccc-cchHHHHHHhhccCCCCCCCHHHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCch
Confidence 99999866542 211222211 11 23567999999999999999999999999999998876789999999997665
Q ss_pred c---ccc----cccCCCHHHHHHHHccHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCcc
Q psy14128 214 R---YDY----EHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESA 286 (393)
Q Consensus 214 ~---~~~----~~lg~~~~~l~~l~~g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~ 286 (393)
+ +.. +++|+|..++.+|+..+.++++.|.++ ++++++|+++.++.+. +.++.+|+..+|..+.+++..+
T Consensus 419 t~a~~Ad~~l~irPGtD~all~al~~~i~~~a~~l~~~-~~~i~~g~~v~~~~~~---~~a~~~la~~~g~~~~~~~~~~ 494 (797)
T PRK07860 419 GLEKMGGTLLRTAPGGEAAALDALATGAPDVAELLRTP-GAVILVGERLATVPGA---LSAAARLADATGARLAWVPRRA 494 (797)
T ss_pred hhhhhhhceeccCCCcHHHHHHHHHHHHHHHHHHHccC-CCEEEEchhhccChhH---HHHHHHHHHHhCCccccccchh
Confidence 3 222 446888888888887777789999875 6899999999887653 6789999999998788778888
Q ss_pred ccccccccC----------------------------------CCcHHHHhh----cccCcEEEEcCCCCCCCChhhHH-
Q psy14128 287 DLIKQLASG----------------------------------SHAFSKKLA----AAKKPLIVVGADMLSRSDGAAVL- 327 (393)
Q Consensus 287 n~~G~~~~g----------------------------------g~~~~~~~~----~~~~al~v~g~np~~~p~~~~v~- 327 (393)
|++|++++| |.++.+|++ +.+|++|++|+||.++||...++
T Consensus 495 n~~G~~~~G~~~~~lpG~~~~~~~~~~~~~~~~w~~~~~p~~~G~~~~ei~~~~~~G~Ikal~v~g~np~s~p~~~~v~~ 574 (797)
T PRK07860 495 GERGALEAGALPTLLPGGRPVADPAARAEVAAAWGVDELPAAPGRDTAGILAAAAAGELGALLVGGVEPADLPDPAAALA 574 (797)
T ss_pred hhhhhHhhcCCCCcCccccccCCHHHHHHHHHHhCCCcCCCCCCcCHHHHHHHHhcCCCcEEEEeCcChhhCCCHHHHHH
Confidence 999887665 234456663 46899999999999999987765
Q ss_pred ------------------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccccCC
Q psy14128 328 ------------------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDI 365 (393)
Q Consensus 328 ------------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~~d~ 365 (393)
+|+|+++++++ |+++|+||+| |.++|++|| .++
T Consensus 575 aL~~ldflVv~D~f~teTa~~ADVVLPaa~~~Ek~Gt~tN~e~rvq~~~kav~-p~~ar~Dw~I---l~~La~~lg-~~~ 649 (797)
T PRK07860 575 ALDAAGFVVSLELRHSAVTERADVVLPVAPVAEKAGTFLNWEGRLRPFEAALR-TTGALSDLRV---LDALADEMG-VDL 649 (797)
T ss_pred HHhcCCeEEEecccCchhHhhCCEEeecCcccccCCceEccCCceEeeccCCC-CCCCchHHHH---HHHHHHHhC-CCC
Confidence 99999999999 4789999999 677778887 466
Q ss_pred CCCC
Q psy14128 366 GYKP 369 (393)
Q Consensus 366 g~~~ 369 (393)
.|.+
T Consensus 650 ~~~~ 653 (797)
T PRK07860 650 GLPT 653 (797)
T ss_pred CCCC
Confidence 6654
No 7
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=6.2e-35 Score=314.44 Aligned_cols=301 Identities=20% Similarity=0.206 Sum_probs=241.5
Q ss_pred HccC--chHHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHHHHhCC
Q psy14128 63 ASGS--HPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLLNKLGS 138 (393)
Q Consensus 63 ~~~~--~~~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt 138 (393)
.+|+ +++..+.+|+++||+|.+++|.+++|++|+..++++|.+. +||+++++++.|+..++|+.|+++||++.+|+
T Consensus 258 ~kG~~~~~~l~~pdRl~~Pl~R~~g~~~~iSWdeAl~~ia~~L~~i~~~~G~~~i~~~~s~~~t~e~~~~~~~f~~~~Gt 337 (776)
T PRK09129 258 DRDRFSYEGLNSEDRLTKPMIKQGGQWKEVDWETALEYVAEGLKGIIEDHGADQIGALASPHSTLEELYLLQKLARGLGS 337 (776)
T ss_pred ccccccccccccccccCCCeEecCCceEEcCHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 4553 5677889999999999999999999999999999999764 58999999999999999999999999999999
Q ss_pred CCccccCCCCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcccccc
Q psy14128 139 EDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYE 218 (393)
Q Consensus 139 ~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~~~ 218 (393)
+|+++....+.............++.++.|+++||+||+||+|+.+++|++..+++++. ++|+||++|||+.+..+...
T Consensus 338 ~n~~~~~~~~~~~~~~~~~g~~~~~~~~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~-~~G~klividpr~t~~~~~~ 416 (776)
T PRK09129 338 GNIDHRLRQQDFRDDAAAPGAPWLGMPIAELSNLDAVLVVGSNLRKEHPLLAARLRQAA-KNGAKLSAINPVDDDFLFPV 416 (776)
T ss_pred CccccccCCccccchhhhhcccccCCCHHHHHhCCEEEEEecCcchhcHHHHHHHHHHH-HCCCeEEEecCCcccccccc
Confidence 99987543322110111111123456789999999999999999999999999999986 58999999999654332111
Q ss_pred ccC------CCHHHHHHH----H-----------------ccHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHH
Q psy14128 219 HLG------ESADLIKQL----A-----------------SGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQL 271 (393)
Q Consensus 219 ~lg------~~~~~l~~l----~-----------------~g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l 271 (393)
..+ .....+..+ . +.++++|+.|+++++++|++|+++.++.++.....++..|
T Consensus 417 ~~~~~~~p~~~~~~la~l~~~i~~~~~~~~~e~~~~it~~~~I~~~A~~l~~a~~~~i~~G~g~~~~~~g~~~~~~i~~L 496 (776)
T PRK09129 417 AQRIIVAPSAWADALAGVAAAVAAAKGVALPEALAKVLAAAAARAIAQSLANGERAAILLGNLAVNHPQAATLRALAQWI 496 (776)
T ss_pred ccCccCChHHHHHHHHHHHHHHHHhhcccChHHhhccCcHHHHHHHHHHHhcCCCeEEEECcccccCCCHHHHHHHHHHH
Confidence 111 111112111 1 1257899999999999999999999999999999999999
Q ss_pred HHHhCCCcccCCCccccccccccC------CCcHHHHhhcccCcEEEEcCCCC-CCCChhhHH-----------------
Q psy14128 272 AAKVTCESDHLGESADLIKQLASG------SHAFSKKLAAAKKPLIVVGADML-SRSDGAAVL----------------- 327 (393)
Q Consensus 272 ~~~tg~~~~~~~~~~n~~G~~~~g------g~~~~~~~~~~~~al~v~g~np~-~~p~~~~v~----------------- 327 (393)
+..+|.+++.+..++|++|+..+| |.+..+|+++.+|++|++|.||+ ++|+...++
T Consensus 497 ~~ltG~~~~~l~~~~n~~g~~~~g~~p~~~g~~~~~il~g~ikal~v~g~Np~~s~p~~~~~~~aL~kl~f~Vv~d~f~t 576 (776)
T PRK09129 497 AKLTGATLGFLTEAANSVGAHLAGALPGKGGLNAAAMLAQPRKAYLLLNVEPELDCADPAQARAALNQAEFVVALSAFAS 576 (776)
T ss_pred HHHHCCCEEccCcchHHHHHHHhCCCCCCcccCHHHHhCCCcCEEEEeCCCccccccCHHHHHHHHhcCCeEEEEeeecC
Confidence 999998888888889999887654 56778899999999999999998 999876654
Q ss_pred ---------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccccCCCC
Q psy14128 328 ---------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGY 367 (393)
Q Consensus 328 ---------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~~d~g~ 367 (393)
+++|.++++++|+|++|+||+| |.++|++||.-++.|
T Consensus 577 eTa~~~ADvVLPaa~~~E~~g~~~~~~g~~~~~~~~v~P~gear~d~~I---l~~LA~~lG~~~~~~ 640 (776)
T PRK09129 577 KATLDYADVLLPIAPFTETSGTFVNAEGRVQSFKGVVRPLGEARPAWKV---LRVLGNLLGLPGFDY 640 (776)
T ss_pred cchhhcCCEEEcCCCcccCCceEECCCCceEEeccccCCCccchhHHHH---HHHHHHHhCCCCCCC
Confidence 8999999999999999999999 566678888533444
No 8
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=4.5e-35 Score=305.91 Aligned_cols=286 Identities=15% Similarity=0.132 Sum_probs=224.8
Q ss_pred chHHhhhhhcCCCEEEeC--CceeeeChHHHHHHHHHHHHHh--cc------------CCCceEEEcCcccHHHHHHHHH
Q psy14128 67 HPFSKKLSAAKKPLIVVG--ADMLSRSDGAAVLALVQQLAAK--VT------------CESDVAGVVGSLADAEAMVALK 130 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g--~~~~~~~~~~al~~~a~~l~~~--~~------------g~~sv~~l~g~~~t~E~~~~~~ 130 (393)
.++.++.+|+++||+|.+ ++|++++|++||..++++|.+. ++ |+++|+++.|+..++|+.|+++
T Consensus 46 ~~~~~s~~RL~~Pl~R~~g~g~~~~iSWdeAld~iA~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~ 125 (649)
T cd02752 46 RDFVHSPKRLKYPMYRAPGSGKWEEISWDEALDEIARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIR 125 (649)
T ss_pred HHhhcCcccccCCEEecCCCCCEEEeCHHHHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHH
Confidence 457778899999999987 7899999999999999999764 35 8999999999999999999999
Q ss_pred HHHHHhCCCCccccCCCCccchhhhhhhcc---cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEE
Q psy14128 131 DLLNKLGSEDLYTEYAFPLEGAGTDLRANY---LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYI 207 (393)
Q Consensus 131 k~~~~lGt~nid~~~~~~~~~~~~~~~~~~---~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi 207 (393)
||++.+|++|+|+..++|+.+...++..++ ++++++.|+++||+||+||+|+.++||+.+.+++++.+++|+|||||
T Consensus 126 kl~r~lGt~~id~~ar~C~~~tv~~l~~~~G~ga~tns~~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvV 205 (649)
T cd02752 126 KFARALGTNNLDHQARIUHSPTVAGLANTFGRGAMTNSWNDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVV 205 (649)
T ss_pred HHHHHhCCCcccCCcchhhhHHHHHHHhhcCCCCCCCCHHHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEE
Confidence 999999999999988888765434443322 45678999999999999999999999999999999875459999999
Q ss_pred cCCCCcccc--c----cccCCCHHHHHHHHc--------------c-----HHHHHHHHHhC----CCCEEEEcCccccc
Q psy14128 208 GPKVDLRYD--Y----EHLGESADLIKQLAS--------------G-----SHAFSKKLAAA----KKPLIVVGADMLSR 258 (393)
Q Consensus 208 ~p~~~~~~~--~----~~lg~~~~~l~~l~~--------------g-----~~~~a~~l~~a----~~~~ii~G~~~~~~ 258 (393)
||+.+.+.. . +..|+|.+++..++. | +.++|+.|+++ +.++|++|+++.||
T Consensus 206 DPR~t~Ta~~AD~~l~irPGTD~All~gmi~~ii~ytpe~v~~itGvp~e~I~~~A~~~a~a~~~~k~~~i~~g~G~tq~ 285 (649)
T cd02752 206 DPRFTRTAAKADLYVPIRSGTDIAFLGGMINYIIRYTPEEVEDICGVPKEDFLKVAEMFAATGRPDKPGTILYAMGWTQH 285 (649)
T ss_pred cCCCCchhHhcCEeeCcCCChHHHHHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHHhccCCCCcEEEEECCccccc
Confidence 998877743 2 345788777665532 2 57899999998 88899999999999
Q ss_pred cCHHHHHHHHHHHHHHhCCCcccCCC-------ccccccccccCCCcHHHHhhcccCcEEEEcCCCC-CCCChhhHH---
Q psy14128 259 SDGAAVLALVQQLAAKVTCESDHLGE-------SADLIKQLASGSHAFSKKLAAAKKPLIVVGADML-SRSDGAAVL--- 327 (393)
Q Consensus 259 ~~~~~~~~~~~~l~~~tg~~~~~~~~-------~~n~~G~~~~gg~~~~~~~~~~~~al~v~g~np~-~~p~~~~v~--- 327 (393)
..|...+.++..|..++| +++..+. .+|.+|+.+++... ...++ |+.|.||+ ++||.+.++
T Consensus 286 ~~G~~~ira~~~L~lllG-niG~pGgGv~~lrg~~NvqGa~d~g~l~------~~lpg-y~~G~Np~~s~p~~~~~~~Al 357 (649)
T cd02752 286 TVGSQNIRAMCILQLLLG-NIGVAGGGVNALRGHSNVQGATDLGLLS------HNLPG-YLGGQNPNSSFPNANKVRRAL 357 (649)
T ss_pred ccHHHHHHHHHHHHHHhC-CCCCCCCccCcCCCccccccccccccCc------ccCcc-ccCCcChhhcCCCHHHHHHHH
Confidence 999999999999999998 5655544 45666666554110 00011 11133333 333332222
Q ss_pred -----------------------------------------------------HHhhhhhhccCCCCCCCcchHHHHHHH
Q psy14128 328 -----------------------------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQ 354 (393)
Q Consensus 328 -----------------------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~ 354 (393)
|++|...++++|||++|+||+| +.
T Consensus 358 ~kld~lVv~D~f~teTa~~Ad~~~~~~~~~~t~vvvLPaa~~~Ek~Gt~tn~~r~vq~~~kav~P~gear~D~~I---l~ 434 (649)
T cd02752 358 DKLDWLVVIDPFPTETAAFWKNPGMDPKSIQTEVFLLPAACQYEKEGSITNSGRWLQWRYKVVEPPGEAKSDGDI---LV 434 (649)
T ss_pred hcCCeEEEEeCCCCHHHHhhcccCCccccccCceEEECCCCccccCcceecCCceEEEECCccCCCccCCCHHHH---HH
Confidence 9999999999999999999999 56
Q ss_pred HHHHhcccc
Q psy14128 355 KAASQVAAL 363 (393)
Q Consensus 355 ~~a~~~g~~ 363 (393)
++++++|..
T Consensus 435 ~La~rlg~~ 443 (649)
T cd02752 435 ELAKRLGFL 443 (649)
T ss_pred HHHHHhCch
Confidence 777777753
No 9
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=100.00 E-value=1.7e-34 Score=290.51 Aligned_cols=287 Identities=21% Similarity=0.239 Sum_probs=231.1
Q ss_pred chHHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCcccc
Q psy14128 67 HPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTE 144 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~ 144 (393)
.++..+.+|+++||+|.+++|++++|++|++.++++|.+. +||+++++++.|+..++|+.+.+++|++.+|++|+++.
T Consensus 46 ~~~~~~~~Rl~~Pm~R~~g~~~~isWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~ 125 (414)
T cd02772 46 YEGLNSEDRLTKPMIKKDGQWQEVDWETALEYVAEGLSAIIKKHGADQIGALASPHSTLEELYLLQKLARGLGSDNIDHR 125 (414)
T ss_pred hhcccCccccCCCeEecCCceEEecHHHHHHHHHHHHHHHHHhcCcceEEEEecCCCCcHHHHHHHHHHHHhCCCCccCc
Confidence 4566778999999999999999999999999999999764 58999999999999999999999999999999999875
Q ss_pred CCCCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCccccccccCCCH
Q psy14128 145 YAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESA 224 (393)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~~~~lg~~~ 224 (393)
...+..............+.++.|+++||+||+||+|+.+++|++..+++++. ++|+||++|||+.+.... ...+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~-~~g~k~i~idp~~~~~~~-~~~~~~~ 203 (414)
T cd02772 126 LRQSDFRDDAKASGAPWLGMPIAEISELDRVLVIGSNLRKEHPLLAQRLRQAV-KKGAKLSAINPADDDFLF-PLSGKAI 203 (414)
T ss_pred cccCccchhhhhccCCCCCCcHHHHHhCCEEEEECCCccccchHHHHHHHHHH-HcCCEEEEEeCccchhhc-ccccccc
Confidence 53322111111111122355788999999999999999999999999999987 579999999996442211 0111111
Q ss_pred ----HHHHHH-------H-----------------ccHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhC
Q psy14128 225 ----DLIKQL-------A-----------------SGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVT 276 (393)
Q Consensus 225 ----~~l~~l-------~-----------------~g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg 276 (393)
+....+ . +.++++++.|+.+++++|++|.++.++.++......+.+|...+|
T Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~~a~~l~~a~~~~i~~G~g~~~~~~~~~~~~~i~~L~~~tg 283 (414)
T cd02772 204 VAPSALANALAQVAKALAEEKGLAVPDEDAKVEASEEARKIAASLVSAERAAVFLGNLAQNHPQAATLRALAQEIAKLTG 283 (414)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCcCChHHHhcCCCHHHHHHHHHHHhcCCCeEEEEccchhcCcchHHHHHHHHHHHHHHC
Confidence 111111 0 136778999999999999999999998999999999999999999
Q ss_pred CCcccCCCccccccccccC-----CCcHHHHhhcccCcEEEEcCCCC-CCCChhhHH-----------------------
Q psy14128 277 CESDHLGESADLIKQLASG-----SHAFSKKLAAAKKPLIVVGADML-SRSDGAAVL----------------------- 327 (393)
Q Consensus 277 ~~~~~~~~~~n~~G~~~~g-----g~~~~~~~~~~~~al~v~g~np~-~~p~~~~v~----------------------- 327 (393)
..++.++.++|+.|++.+| +.+..+++++.++++|++|.||. ++|+...++
T Consensus 284 ~~~~~~~~~~n~~g~~~~g~~p~~~~~~~~~~~~~~~~~~v~~~np~~~~p~~~~~~~al~k~~f~V~~d~~~t~ta~~~ 363 (414)
T cd02772 284 ATLGVLGEGANSVGAYLAGALPHGGLNAAAMLEQPRKAYLLLNVEPELDCANPAQALAALNQAEFVVALSAFASAALLDY 363 (414)
T ss_pred cCccCCCCccchHHHHHhCCCCCCCCCHHHHhcccCCEEEEeCCCccccCCCHHHHHHHHhcCCEEEEEeccCCcchhhc
Confidence 8789999999999887665 45677888888999999999998 888876654
Q ss_pred ---------------------HHhhhhhhccCCCCCCCcchHHHHHHHH
Q psy14128 328 ---------------------ALVQQLAAKVTCESDVPCDWKVLNILQK 355 (393)
Q Consensus 328 ---------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~ 355 (393)
+++|..+++++|||++|+||+||..|++
T Consensus 364 ADvvLP~~~~~E~~g~~~~~~~~~~~~~~~v~p~ge~r~d~~i~~~La~ 412 (414)
T cd02772 364 ADVLLPIAPFTETSGTFVNLEGRVQSFKGVVKPLGEARPAWKVLRVLGN 412 (414)
T ss_pred CCEEecCCccccCCcCeECCCCcEEeeccccCCCcccchHHHHHHHHHh
Confidence 9999999999999999999999766654
No 10
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=100.00 E-value=6.1e-34 Score=303.82 Aligned_cols=294 Identities=16% Similarity=0.185 Sum_probs=235.1
Q ss_pred HHccCchHHhhhhhcCCCEEEeC--CceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCC
Q psy14128 62 LASGSHPFSKKLSAAKKPLIVVG--ADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSE 139 (393)
Q Consensus 62 i~~~~~~~~~~l~r~~~PlI~~g--~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~ 139 (393)
+.+=.....++.+|+++||+|.+ ++|++++|++|+..++++|.+.. +++++++.|++.++|+.|++++|++.+||+
T Consensus 86 l~~~~~~~l~~~~RL~~Pm~R~~g~g~~~~ISWdEAl~~IA~kL~~~~--p~~i~~y~sg~~s~e~~~~~~~f~r~lGt~ 163 (743)
T TIGR01701 86 LRTLDSHELEKLGRLTYPLSLRPGSDHYTPISWDDAYQEIAAKLNSLD--PKQVAFYTSGRTSNEAAYLYQLFARSLGSN 163 (743)
T ss_pred HhcCCHHHhccCCCCCCCEEecCCCCCEEEccHHHHHHHHHHHHHhcC--CCeEEEEecCCcchHHHHHHHHHHHHhCCC
Confidence 33334567788899999999984 57999999999999999998753 899999999999999999999999999999
Q ss_pred CccccCCCCccchhhhhhhccc---CCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCc---
Q psy14128 140 DLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDL--- 213 (393)
Q Consensus 140 nid~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~--- 213 (393)
|++.+..+|..+...++..+++ .+.+++|+++||+||+||+||.+++|.+..+++++. ++|+|||+|||+.+.
T Consensus 164 n~~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~-~rGakiIvIdP~~~~~l~ 242 (743)
T TIGR01701 164 NLPDCSNMCHEPSSVALKRSIGIGKGSVNLEDFEHTDCLVFIGSNAGTNHPRMLKYLYAAK-KRGAKIIAINPLRERGLE 242 (743)
T ss_pred CcCCCcccccchhhHHHHHhcCCCCCCCCHhHHHhCCEEEEEecCcccccHHHHHHHHHHH-HCCCEEEEECCCCccccc
Confidence 9998777887655555544332 346799999999999999999999999999999986 689999999995432
Q ss_pred ------------c-----ccc----cccCCCHHHHHHHHc----------------------------------------
Q psy14128 214 ------------R-----YDY----EHLGESADLIKQLAS---------------------------------------- 232 (393)
Q Consensus 214 ------------~-----~~~----~~lg~~~~~l~~l~~---------------------------------------- 232 (393)
+ ... +.+|+|.+++..|+.
T Consensus 243 rf~~p~~~~~~~t~~~a~~Ad~~l~irPGtD~AL~~g~~~~li~~~~~~~~~~~D~~Fi~~~t~Gfe~l~~~v~~~t~e~ 322 (743)
T TIGR01701 243 RFWIPQIPESMLTGGGTQISSEYYQVRIGGDIALFNGVMKLLIEAEDAQPGSLIDHEFIANHTNGFDELRRHVLQLNWND 322 (743)
T ss_pred ccccccccchhccccchHhhCeeecCCCCcHHHHHHHHHHHHHHCCCccccccccHHHHHHhcchHHHHHHHHHhCCHHH
Confidence 1 112 335777665533310
Q ss_pred ----------cHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCC-------ccccccccccC
Q psy14128 233 ----------GSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGE-------SADLIKQLASG 295 (393)
Q Consensus 233 ----------g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~-------~~n~~G~~~~g 295 (393)
.++++|+.|+++++++|+||+|+.+|.++...+.++.+|+.++| .++.++. .+|.+|.+.+|
T Consensus 323 ~~~~tGv~~~~I~~~A~~~a~a~~~~i~~g~G~~q~~~g~~~~~ai~~L~~L~G-niG~~G~G~~~~~g~~n~qG~~~~g 401 (743)
T TIGR01701 323 IERSSGLSQEEILEFAKLLANSRRVVFCWAMGLTQHAHGVDNISQVANLALLRG-NIGKPGAGVCPIRGHSNVQGDRTMG 401 (743)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCEEEEECccccccchHHHHHHHHHHHHHHhC-CCCCCCCCcCCCCCCCCCCCCcccC
Confidence 15778999999999999999999999999999999999999998 5555544 45766655443
Q ss_pred -------------------------CCcHHHHh----hcccCcEEEEcCCCC-CCCChhhHH------------------
Q psy14128 296 -------------------------SHAFSKKL----AAAKKPLIVVGADML-SRSDGAAVL------------------ 327 (393)
Q Consensus 296 -------------------------g~~~~~~~----~~~~~al~v~g~np~-~~p~~~~v~------------------ 327 (393)
|.+..+++ ++.+|++|++|.||+ +.||...++
T Consensus 402 ~~~~~~~~~~~~l~~~~g~~~p~~~g~~~~~~~~a~~~g~ikal~~~ggNp~~~~Pd~~~~~~AL~kld~~V~~d~~lt~ 481 (743)
T TIGR01701 402 ITEKPEEEFLARLSQIYGFTPPDWPGDTTVAMIEAILTGKVRAFICLGGNFLEAMPDTAAIERALRQLDLRVHVATKLNR 481 (743)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHhcCCceEEEEeCCChHhcCCCHHHHHHHHHcCCeEEEEeCCcCc
Confidence 34444544 456899999999998 999986654
Q ss_pred ------------------------------------HHhhhhhhccCCCC-CCCcchHHHHHHHHHHHhccc
Q psy14128 328 ------------------------------------ALVQQLAAKVTCES-DVPCDWKVLNILQKAASQVAA 362 (393)
Q Consensus 328 ------------------------------------~~vq~~~~av~~~g-~~~~dw~i~~~l~~~a~~~g~ 362 (393)
++++..+++++||+ ++|+||+| ++++|+++|.
T Consensus 482 Ta~~a~~advVLP~~~~~E~~~~~~~~q~vt~~~s~~~v~~~~~~v~P~~~e~rsd~~I---~~~LA~~lg~ 550 (743)
T TIGR01701 482 SHVLAKEEALILPVLGRYEQDGQGTGKQAVSVESSMRMVHFSRGILKPRGAELRSEWAI---IAEIAKALLP 550 (743)
T ss_pred chhhhcCCeEEECCCCcccccCccCcccceeEEcCCceEEeecCcCCCCCcccCCHHHH---HHHHHHHHCC
Confidence 25777889999998 99999999 6777777774
No 11
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=100.00 E-value=4.1e-34 Score=300.01 Aligned_cols=287 Identities=32% Similarity=0.429 Sum_probs=230.7
Q ss_pred HHccC--chHHhhhhhcCCCEEE-eCCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCC
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIV-VGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGS 138 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~-~g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt 138 (393)
+.+|+ +++.++.+|+++||+| .+++|.+.+|++|+..++++|.+. ++++++.|++.++|+.|+++||++.+|+
T Consensus 255 C~kG~~~~~~~~~~dRl~~Pl~R~~~g~~~~isWdeAl~~ia~kL~~i----~~va~~~~~~~~~e~~~~~~~~~~~lGt 330 (603)
T TIGR01973 255 CDKGRFGYDGLNRQDRLTKPLLRNQEGNLLEVSWAEALAIAAEKLKAS----SRIGGIAGPRSSLEELFALKKLVRKLGS 330 (603)
T ss_pred CHhHhhhhhhhcCccccCCceEecCCCceEEcCHHHHHHHHHHHHhcc----CcEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 34443 5678889999999999 788999999999999999999765 7899999999999999999999999999
Q ss_pred CCccccCCCCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcccc--
Q psy14128 139 EDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYD-- 216 (393)
Q Consensus 139 ~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~-- 216 (393)
+|+++....+.... ......+.++.++.|+++||+||+||+|+.+++|+++.|++++.+++|+||++|||+.+.+..
T Consensus 331 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~A 409 (603)
T TIGR01973 331 ENFDLRIRNYEFES-ADLRANYLFNTTLADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPA 409 (603)
T ss_pred Cccccccccccccc-chhhcccccCCCHHHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhh
Confidence 99998664332211 111111233467899999999999999999999999999999885455999999997665532
Q ss_pred c----cccCCCHHHHHHHHccHH-HHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCC------CcccCCCc
Q psy14128 217 Y----EHLGESADLIKQLASGSH-AFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC------ESDHLGES 285 (393)
Q Consensus 217 ~----~~lg~~~~~l~~l~~g~~-~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~------~~~~~~~~ 285 (393)
. +.+|++..++..++.+.. .+|+.|+++++++|++|+++.++.++.....++.+|+..+|. +++.+..+
T Consensus 410 d~~l~i~Pgtd~all~~l~~~~~~~~A~~l~~ak~~~ii~g~g~~~~~~g~~~~~a~~~L~~l~G~~~~~g~g~~~~~~~ 489 (603)
T TIGR01973 410 NTNLVFHPGLSPKKLDDIASGAHSDIAAALKAAKKPLIIVGDSAYSHLDGAALISAAANIAKVIKVRRKEWNGLNILSSG 489 (603)
T ss_pred ccceeecCCccHHHHHHHHhcccHHHHHHHhhCCCcEEEEechhhcCCCHHHHHHHHHHHHHHhCCccCCCceEEEeccc
Confidence 2 446888888888876543 389999999999999999999999999999999999999982 33445556
Q ss_pred cccccccccCCC--cHHHHh-hcccCcEEEEcCCCCCCCChhhHH-----------------------------------
Q psy14128 286 ADLIKQLASGSH--AFSKKL-AAAKKPLIVVGADMLSRSDGAAVL----------------------------------- 327 (393)
Q Consensus 286 ~n~~G~~~~gg~--~~~~~~-~~~~~al~v~g~np~~~p~~~~v~----------------------------------- 327 (393)
+|++|+..++.. .+.+++ .+.+|++|++|+||+..|+...++
T Consensus 490 ~n~~g~~~~g~~~~~l~~~i~~g~ikal~v~g~Np~~~~~~~~~~~~~~~~~f~Vv~d~f~teTa~~ADvVLPaa~~~Ek 569 (603)
T TIGR01973 490 ANSVGLLDLGGESTGLDAALNLGAADALFLLGADLERALDKTARDALSKADAFVIYQGHHGTETAEKADVILPGAAFTEK 569 (603)
T ss_pred hHHHHHHHhcCCCccchhhhhcCCCCEEEEeccCcccCChHHHHHHHHhcCCEEEEecCcCCccHhhCCEEEcCCCccCC
Confidence 788888877643 233333 467999999999998666543322
Q ss_pred --------HHhhhhhhccCCCCCCCcchHHHHHH
Q psy14128 328 --------ALVQQLAAKVTCESDVPCDWKVLNIL 353 (393)
Q Consensus 328 --------~~vq~~~~av~~~g~~~~dw~i~~~l 353 (393)
+++|.++++++|||++|+||+||..|
T Consensus 570 ~G~~~n~~g~~~~~~~~v~p~ge~r~d~~il~~L 603 (603)
T TIGR01973 570 SGTYVNLEGRAQRFEQAVKPPGEAREDWRILRAL 603 (603)
T ss_pred CceEECCCCcCEeeccccCCCccchHHHHHHHhC
Confidence 89999999999999999999997653
No 12
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=2.1e-33 Score=291.06 Aligned_cols=257 Identities=18% Similarity=0.173 Sum_probs=204.8
Q ss_pred chHHhhhhhcCCCEEEe--CCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCcccc
Q psy14128 67 HPFSKKLSAAKKPLIVV--GADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTE 144 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~--g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~ 144 (393)
....++.+|+++||+|. .++|++++|++|+..++++|.+. .+++++++.|++.++|+.|++++|++.+||+|++.+
T Consensus 56 ~~~l~~~~RL~~Pm~R~~G~g~~~~ISWDEAl~~IA~kL~~~--~~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~~~~ 133 (574)
T cd02767 56 DYELEHLGRLTYPMRYDAGSDHYRPISWDEAFAEIAARLRAL--DPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDC 133 (574)
T ss_pred hhhccCCCccCCCEEecCCCCCEEEecHHHHHHHHHHHHhhh--CCCcEEEEecCCCccHHHHHHHHHHHHhCCCCcCCC
Confidence 34568889999999998 46899999999999999999865 368899999999999999999999999999999987
Q ss_pred CCCCccchhhhhhhcc---cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCc--------
Q psy14128 145 YAFPLEGAGTDLRANY---LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDL-------- 213 (393)
Q Consensus 145 ~~~~~~~~~~~~~~~~---~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~-------- 213 (393)
...|..+...++..++ ..+.+++|+++||+||+||+||.+++|.+..+++++. ++|+|||+|||+.+.
T Consensus 134 s~~C~~~~~~al~~~~G~~~~t~~~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~-~rGakIIvIdP~~~~gl~~f~~p 212 (574)
T cd02767 134 SNMCHEPSSVGLKKSIGVGKGTVSLEDFEHTDLIFFIGQNPGTNHPRMLHYLREAK-KRGGKIIVINPLREPGLERFANP 212 (574)
T ss_pred CCCcchHHHhHHHHhcCCCCCCCCHHHHhcCCEEEEEcCChhhhcHHHHHHHHHHH-HCCCEEEEECCCccccccccccc
Confidence 7778755444444333 2356799999999999999999999999999999986 689999999996431
Q ss_pred ---------c--ccc----cccCCCHHHHHHHH-----c-----------------------------------------
Q psy14128 214 ---------R--YDY----EHLGESADLIKQLA-----S----------------------------------------- 232 (393)
Q Consensus 214 ---------~--~~~----~~lg~~~~~l~~l~-----~----------------------------------------- 232 (393)
+ ... +.+|+|.+++..|+ +
T Consensus 213 ~~~~~~lt~~a~~Ad~~l~irPGtD~AL~~gl~k~li~~~~~~~~~~D~~Fi~~~t~Gfd~~~~~l~~~t~e~~~~~tGv 292 (574)
T cd02767 213 QNPESMLTGGTKIADEYFQVRIGGDIALLNGMAKHLIERDDEPGNVLDHDFIAEHTSGFEEYVAALRALSWDEIERASGL 292 (574)
T ss_pred cccccccccchhhhCeeeCCCCCcHHHHHHHHHHHHHhCccccCCCcCHHHHHHHccCHHHHHHHHHcCCHHHHHhHhCc
Confidence 1 112 33567766543331 1
Q ss_pred ---cHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCC-------CccccccccccC-------
Q psy14128 233 ---GSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLG-------ESADLIKQLASG------- 295 (393)
Q Consensus 233 ---g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~-------~~~n~~G~~~~g------- 295 (393)
.++++|+.|+++++++|+||+|+.+|.++...+.++.+|+.++| .+++.+ ..+|.+|.+.+|
T Consensus 293 ~~e~I~~~A~~~a~a~~~ii~~g~Gi~q~~~g~~~v~ai~~L~~LtG-niGr~G~G~~~~~g~snvqG~~~~g~~~~~~~ 371 (574)
T cd02767 293 SREEIEAFAAMYAKSERVVFVWGMGITQHAHGVDNVRAIVNLALLRG-NIGRPGAGLMPIRGHSNVQGDRTMGITEKPFP 371 (574)
T ss_pred CHHHHHHHHHHHHhCCCEEEEecchhcccchHHHHHHHHHHHHHHhC-CCCCCCCCCCcCCCCCCCCCCcccCCCCCCCH
Confidence 15778999999999999999999999999999999999999998 454444 446777665443
Q ss_pred ------------------CCcHHHHh----hcccCcEEEEcCCCC-CCCChhhHH
Q psy14128 296 ------------------SHAFSKKL----AAAKKPLIVVGADML-SRSDGAAVL 327 (393)
Q Consensus 296 ------------------g~~~~~~~----~~~~~al~v~g~np~-~~p~~~~v~ 327 (393)
|.++.+++ ++.+|++|++|.||+ +.||...++
T Consensus 372 ~~~~~l~~~~g~~~P~~~g~~~~~~~~a~~~g~ik~l~~~ggNp~~~~pd~~~~~ 426 (574)
T cd02767 372 EFLDALEEVFGFTPPRDPGLDTVEAIEAALEGKVKAFISLGGNFAEAMPDPAATE 426 (574)
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCceEEEEecCCHHhcCcCHHHHH
Confidence 34455554 457899999999998 899976644
No 13
>KOG2282|consensus
Probab=100.00 E-value=1.8e-33 Score=272.38 Aligned_cols=300 Identities=51% Similarity=0.771 Sum_probs=260.6
Q ss_pred CCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCCcccchhhhcccHHHHHHHHccCchHHhhhhhcCCCEE
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHPFSKKLSAAKKPLI 81 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d~~~~~~~~g~~~~~l~~i~~~~~~~~~~l~r~~~PlI 81 (393)
|..|+.--+|||++.. +.+.+|..|=|..+-..+-.++++....-.+=+ .-+|+..|||
T Consensus 250 esidv~davgsnivvs-------------~rt~ev~ri~pr~nedineewi~dksrfa~dgl--------krqrl~~pmv 308 (708)
T KOG2282|consen 250 ESIDVMDAVGSNIVVS-------------TRTGEVLRILPRMNEDINEEWISDKSRFAYDGL--------KRQRLTEPMV 308 (708)
T ss_pred cceehhhhccCcEEEe-------------cCCccceeeccccccccchhhhcccceeeecch--------hhhhhcccce
Confidence 5567777789998877 456788888775554444444544332211111 1368999999
Q ss_pred Ee-CCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcc
Q psy14128 82 VV-GADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANY 160 (393)
Q Consensus 82 ~~-g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~ 160 (393)
|. +|.+...+|++||..++..|.+ ..++.+++++|++.+.|.+..++.+.+.+|+.|+.++..|.. ...+++++|
T Consensus 309 r~~~g~l~~~~we~al~~va~~~~~--~~~~~~a~iag~L~daea~valkdl~nrl~se~v~te~~f~s--~gtdlrsny 384 (708)
T KOG2282|consen 309 RNEDGLLKAVSWEDALSRVAGMLQS--FQGKQIAAIAGGLVDAEALVALKDLLNRVGSENVCTEEVFPG--GGTDLRSNY 384 (708)
T ss_pred eCCCCceeeeeHHHHHHHHHHHHHh--cCccceeeeccchhhHHHHHHHHHHHhhcCcccceeecccCC--CCchhhhhh
Confidence 96 6889999999999999998864 346789999999999999999999999999999998887763 357888899
Q ss_pred cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCccccccccCCCHHHHHHHHccHHHHHHH
Q psy14128 161 LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKK 240 (393)
Q Consensus 161 ~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~~~~lg~~~~~l~~l~~g~~~~a~~ 240 (393)
.++.++..+++||.+|++|+||+.|+|.+|.|+|+.+..+..++.+|+|..+++|.+.|+|+++..+.++++|.|+|++.
T Consensus 385 l~nt~iag~e~adavllVgtnpr~eap~~narirks~~~~~~qv~~Ig~~aDl~y~~~~lga~~~i~~~Ia~g~h~fak~ 464 (708)
T KOG2282|consen 385 LLNTTIAGVEEADAVLLVGTNPRFEAPLVNARIRKSWLHNDLQVALIGPPVDLTYDYDHLGASAKILKDIASGSHPFSKV 464 (708)
T ss_pred hhhcchhhhcccceeeeecCCccccccccchhhheeeeeccceeeeecCCcceeeeeccCCCcHHHHHHHHcCccHHHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccccccccCCCcHHHHhhcccCcEEEEcCCCCCC
Q psy14128 241 LAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSR 320 (393)
Q Consensus 241 l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G~~~~gg~~~~~~~~~~~~al~v~g~np~~~ 320 (393)
++.+++|+||+|.+.+++.++.++...+.+++...+.
T Consensus 465 l~~ak~p~iIvga~~l~r~dgaAil~~v~qia~kL~~------------------------------------------- 501 (708)
T KOG2282|consen 465 LKEAKKPAIIVGASALQRNDGAAILAAVSSIAQKLRM------------------------------------------- 501 (708)
T ss_pred hccCCCceEEEcchhhcccchhHHHHHHHHHHHHhcc-------------------------------------------
Confidence 9999999999999999999999999999998887761
Q ss_pred CChhhHHHHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccccCCCCCCCchhhhcCCCcEEEEecCCCCCC
Q psy14128 321 SDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGSI 392 (393)
Q Consensus 321 p~~~~v~~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
-+||..+++|..-|...|++|.||.+|+...++.++|++||||+|++.+
T Consensus 502 -----------------------~~~w~~~nvL~~~a~q~~aLd~gyk~ga~~~~k~~~KVlylL~Ad~g~v 550 (708)
T KOG2282|consen 502 -----------------------TPDWKVLNVLQRIAAQVGALDVGYKAGVAAIRKNPPKVLFLLGADAGKV 550 (708)
T ss_pred -----------------------CCcceeehHHHHhhhhhhhccccchhhhHHHhcCCceEEEEeccCCCcc
Confidence 1689999999999999999999999998889999999999999999875
No 14
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=100.00 E-value=1.3e-32 Score=299.29 Aligned_cols=295 Identities=13% Similarity=0.098 Sum_probs=231.3
Q ss_pred HHccC--chHHhhhhhcCCCEEEe--CCceeeeChHHHHHHHHHHHHHhc---------cC-----CCceEEEcCcccHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVV--GADMLSRSDGAAVLALVQQLAAKV---------TC-----ESDVAGVVGSLADA 123 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~--g~~~~~~~~~~al~~~a~~l~~~~---------~g-----~~sv~~l~g~~~t~ 123 (393)
|.+|. .++.++.+|+++||+|. +++|+++||++|+..++++|.+.. +| +++++++.|++.++
T Consensus 91 C~KG~~~~~~~~~pdRL~~PL~R~~G~g~~~~ISWDEAld~IA~kLk~i~~~~~~~~~~~G~~~~~~~sia~~~s~~~tn 170 (1009)
T TIGR01553 91 CPKGASTWDLVNNERRPANPLYRAPGSDQWEEISWDWAIDTIARRVKDTRDATFVTKDAKGQVVNRCDGIASVGSSAMDN 170 (1009)
T ss_pred CHhHHHHHHhhcCCCcccCCEEecCCCCceEEeCHHHHHHHHHHHHHHHHHhhhcccccCCccccccceEEEEecCCCCc
Confidence 44453 56788999999999997 357999999999999999997643 34 68899999999999
Q ss_pred HHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcc---cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcC
Q psy14128 124 EAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANY---LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTN 200 (393)
Q Consensus 124 E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~---~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~ 200 (393)
|+.|+++||++.+||+|+++..++|+.+...++..++ .++.++.|+++||+||+||+|+.+++|+...+++++. ++
T Consensus 171 Ee~yl~~kf~r~lGt~n~~~~~~~C~~~~~~al~~~~G~~~~~~~~~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak-~~ 249 (1009)
T TIGR01553 171 EECWLYQKWLRSLGLFYIEHQARIUHSPTVASLAPSFGRGAMTNNWVDIKNSDLILVMGGNPAENHPIGFKWAIRAK-KK 249 (1009)
T ss_pred HHHHHHHHHHHHhCCCcccCcccccccHHHHHHHHhhcCCCCCCCHHHHHhCCEEEEECCChhhhChHHHHHHHHHH-Hc
Confidence 9999999999999999999988888865444444333 3456689999999999999999999999988998886 58
Q ss_pred CceEEEEcCCCCcccc--ccc----cCCCHHHHHHHH-------------------------------------------
Q psy14128 201 ELDVAYIGPKVDLRYD--YEH----LGESADLIKQLA------------------------------------------- 231 (393)
Q Consensus 201 gakiivi~p~~~~~~~--~~~----lg~~~~~l~~l~------------------------------------------- 231 (393)
|+|||||||+.+.+.. ..| +|+|.+++..|+
T Consensus 250 GakiIvIDPR~t~tA~~AD~~l~irPGTD~AL~~am~~~Ii~e~l~D~~Fv~~~T~gp~LV~~~~~~~~g~f~g~d~~~~ 329 (1009)
T TIGR01553 250 GAKIIHIDPRFNRTATVADLYAPIRSGSDIAFLNGMIKYILEKELYQKEYVVNYTNASFIVGEGFAFEDGLFAGYNKETR 329 (1009)
T ss_pred CCEEEEEcCCCCchhHhhccEeCCCCChHHHHHHHHHHHHHHCCCccHHHHHHHcCCccccccccccccccccccccccc
Confidence 9999999998777633 233 355554332210
Q ss_pred -----------------------------------------------------ccHHHHHHHHHhCC----CCEEEEcCc
Q psy14128 232 -----------------------------------------------------SGSHAFSKKLAAAK----KPLIVVGAD 254 (393)
Q Consensus 232 -----------------------------------------------------~g~~~~a~~l~~a~----~~~ii~G~~ 254 (393)
+.++++|+.|++++ .++|++|+|
T Consensus 330 ~~~~~~w~~~~~~~g~~~~~~~l~~~~tvf~~lk~~v~~yTpE~va~itGVpae~I~~lA~~~a~a~~p~k~~~i~~g~G 409 (1009)
T TIGR01553 330 KYDKSKWGYEFDENGNPKRDETLKHPRCVFNILKEHYSRYTPEKVSAICGTPKELFLKVYEEYCKTGKPNKAMTILYALG 409 (1009)
T ss_pred ccccccccccccccccccccccccccccHHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHHhcCCCCCcEEEEeCCc
Confidence 01577899998873 678999999
Q ss_pred cccccCHHHHHHHHHHHHHHhCCCcccCCCc-------cccccccccC-------C------------------------
Q psy14128 255 MLSRSDGAAVLALVQQLAAKVTCESDHLGES-------ADLIKQLASG-------S------------------------ 296 (393)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~-------~n~~G~~~~g-------g------------------------ 296 (393)
+.+|.+|.....++.+|..++| +++.+++| +|.+|...+| |
T Consensus 410 ~tqh~~G~~~vrai~~L~lLtG-niG~pGgG~~~lrG~~NvqG~~d~g~~~~~lPgy~~~~~~~~~~~~~~~~~~~~~~~ 488 (1009)
T TIGR01553 410 WTQHSVGTQNIRAMSINQLLLG-NIGVPGGGINALRGHSNVQGSTDHGLLMHILPGYLGTPRASIPTYEQYTKKFTPVSK 488 (1009)
T ss_pred cccchhHHHHHHHHHHHHHHhC-CCCCCCCccccCCCccccCCCcccccCcccCCcccccCchhhhhhhhhhhccccccc
Confidence 9999999999999999999999 67777665 3555554433 1
Q ss_pred --------------------------------------------Cc-HH----HHhhcccCcEEEEcCCCC-CCCChhhH
Q psy14128 297 --------------------------------------------HA-FS----KKLAAAKKPLIVVGADML-SRSDGAAV 326 (393)
Q Consensus 297 --------------------------------------------~~-~~----~~~~~~~~al~v~g~np~-~~p~~~~v 326 (393)
.. .. .|.++.+|++|++|.||+ +.||.+.+
T Consensus 489 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~n~~~~~~~p~~~~g~~~~~~~~~~~~~G~Ik~l~v~G~Np~~s~P~~~~~ 568 (1009)
T TIGR01553 489 DPQSANYWSNFPKFFASYIKSMWGDAATNENGWAYDYLPKGEDGYDSWLTLFDDMFQGKIKGFFAWGQNPLNSGPNSNKT 568 (1009)
T ss_pred cccccchhhccchhHHHHHHHhhccccccccccccccCCccccccchHHHHHHHHhCCCceEEEEeCCChhhcCCCHHHH
Confidence 00 01 122346899999999998 88986654
Q ss_pred H--------------------------------------------------------HHhhhhhhccCCCCCCCcchHHH
Q psy14128 327 L--------------------------------------------------------ALVQQLAAKVTCESDVPCDWKVL 350 (393)
Q Consensus 327 ~--------------------------------------------------------~~vq~~~~av~~~g~~~~dw~i~ 350 (393)
+ +++|...++++|||++|+||+|+
T Consensus 569 ~~AL~kLdflVv~D~f~teTA~~A~~~~~~~~d~~t~dvVLPaa~~~Ek~gt~tn~~r~vq~~~kav~P~gear~D~~I~ 648 (1009)
T TIGR01553 569 REALTKLKWMVVMDPFDNETGSFWRGPGMDPKEIKTEVFFLPTAVFIEKEGSISNSGRWMQWRYKGPDPPGNAIPDGDII 648 (1009)
T ss_pred HHHHhCCCEEEEEeCccCHHHHhhhhcCCcccccCccEEEECCCCccccCeeEEcCCceEEEecccCCCccccCCHHHHH
Confidence 4 89999999999999999999995
Q ss_pred HHHHHHHHhcc
Q psy14128 351 NILQKAASQVA 361 (393)
Q Consensus 351 ~~l~~~a~~~g 361 (393)
.++|.++|
T Consensus 649 ---~~La~rl~ 656 (1009)
T TIGR01553 649 ---VELAKRVQ 656 (1009)
T ss_pred ---HHHHHHHH
Confidence 55556665
No 15
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=100.00 E-value=9.7e-33 Score=283.81 Aligned_cols=277 Identities=17% Similarity=0.131 Sum_probs=217.9
Q ss_pred chHHhhhhhcCCCEEEeCC---ceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCc--ccHHHHHHHHHHHHHHhCCC
Q psy14128 67 HPFSKKLSAAKKPLIVVGA---DMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGS--LADAEAMVALKDLLNKLGSE 139 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g~---~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~--~~t~E~~~~~~k~~~~lGt~ 139 (393)
.++..+.+|+++||+|.|+ +|++++|++|++.++++|.+. .||+++++++.++ ....+..+. ++|++.+|++
T Consensus 47 ~~~~~~pdRl~~Pl~R~g~rgg~~~~isWdeAl~~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~~~-~~~~~~~Gs~ 125 (501)
T cd02766 47 VERVYSPDRLLTPLKRVGRKGGQWERISWDEALDTIAAKLKEIKAEYGPESILPYSYAGTMGLLQRAAR-GRFFHALGAS 125 (501)
T ss_pred HhhhcChhhhccceeecCCCCCceEEecHHHHHHHHHHHHHHHHHhhCCcEEEEecccCCccccchHHH-HHHHHhCCCC
Confidence 5677788999999999874 899999999999999999764 5899999877543 333444443 7899999999
Q ss_pred CccccCCCCccchhhhhhhccc--CCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcccc-
Q psy14128 140 DLYTEYAFPLEGAGTDLRANYL--LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYD- 216 (393)
Q Consensus 140 nid~~~~~~~~~~~~~~~~~~~--~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~- 216 (393)
|++. ..|..+...+...+++ .+.+++|+++||+||+||+|+.+++|.+..+++++. ++|+|||+|||+.+.+..
T Consensus 126 ~~~~--~~c~~~~~~~~~~~~G~~~~~~~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~-~~GaklivvDPr~t~ta~~ 202 (501)
T cd02766 126 ELRG--TICSGAGIEAQKYDFGASLGNDPEDMVNADLIVIWGINPAATNIHLMRIIQEAR-KRGAKVVVIDPYRTATAAR 202 (501)
T ss_pred CCCC--CccHHHHHHHHHhhcCCCCCCCHHHHhcCCEEEEECCChhhhchhHHHHHHHHH-HCCCEEEEECCCCCccHHH
Confidence 9875 4565443333333222 245688999999999999999999999999998875 689999999998777733
Q ss_pred -ccc----cCCCHHHHHHHHc--------------------------------------------cHHHHHHHHHhCCCC
Q psy14128 217 -YEH----LGESADLIKQLAS--------------------------------------------GSHAFSKKLAAAKKP 247 (393)
Q Consensus 217 -~~~----lg~~~~~l~~l~~--------------------------------------------g~~~~a~~l~~a~~~ 247 (393)
..| +|+|..++..|+. .++++|+.|++++++
T Consensus 203 Ad~~l~i~PGtD~al~~al~~~ii~~~~~d~~fv~~~t~gf~~~~~~v~~~t~e~~~~~tgv~~~~I~~~A~~~a~~~~~ 282 (501)
T cd02766 203 ADLHIQIRPGTDGALALGVAKVLFREGLYDRDFLARHTEGFEELKAHLETYTPEWAAEITGVSAEEIEELARLYGEAKPP 282 (501)
T ss_pred hCeeeccCCCcHHHHHHHHHHHHHHCCCccHHHHHHhcCCHHHHHHHHhhCCHHHHHHHHCCCHHHHHHHHHHHHhCCCc
Confidence 344 4677665443321 156789999999999
Q ss_pred EEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccccccccCCCcHHHHhhcccCcEEEEcCCCC-CCCChhhH
Q psy14128 248 LIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADML-SRSDGAAV 326 (393)
Q Consensus 248 ~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G~~~~gg~~~~~~~~~~~~al~v~g~np~-~~p~~~~v 326 (393)
+|++|+++.++.++.....++.+|+..|| +++.++.+..... + ...+|++|++|.||+ ++||...+
T Consensus 283 ~i~~g~g~~~~~~g~~~~~ai~~L~~ltG-~~g~~G~g~~~~~-----~-------~~~ik~l~~~g~Np~~~~p~~~~~ 349 (501)
T cd02766 283 SIRLGYGMQRYRNGGQNVRAIDALPALTG-NIGVPGGGAFYSN-----S-------GPPVKALWVYNSNPVAQAPDSNKV 349 (501)
T ss_pred EEEecchhhhccchHHHHHHHHHHHHHhC-CCCCCCCcccCCC-----C-------CCCeeEEEEeCCCHHhhCCCHHHH
Confidence 99999999999999999999999999999 6777765432110 0 056899999999998 99998654
Q ss_pred H---------------------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhcc
Q psy14128 327 L---------------------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVA 361 (393)
Q Consensus 327 ~---------------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g 361 (393)
+ +++|..+++++|||++|+||+| +.++|+++|
T Consensus 350 ~~a~l~~~~f~Vv~D~~~teTa~~ADvVLP~a~~~E~~~~~~~~~~~~~~~~~~~v~p~ge~~~d~~I---~~~La~~lg 426 (501)
T cd02766 350 RKGLAREDLFVVVHDQFMTDTARYADIVLPATTFLEHEDVYASYWHYYLQYNEPAIPPPGEARSNTEI---FRELAKRLG 426 (501)
T ss_pred HHHHhcCCCeEEEEecCcCchHhhccEeecccCcccccccccccCcceEEecccccCCCccCcCHHHH---HHHHHHHcC
Confidence 3 6789999999999999999999 677788887
Q ss_pred cc
Q psy14128 362 AL 363 (393)
Q Consensus 362 ~~ 363 (393)
.-
T Consensus 427 ~~ 428 (501)
T cd02766 427 FG 428 (501)
T ss_pred CC
Confidence 53
No 16
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.7e-32 Score=287.38 Aligned_cols=285 Identities=15% Similarity=0.132 Sum_probs=220.7
Q ss_pred hhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHh--ccCC-CceEEE----cCcccHHHHHHHHHHHHHH-hCCCCcccc
Q psy14128 73 LSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAK--VTCE-SDVAGV----VGSLADAEAMVALKDLLNK-LGSEDLYTE 144 (393)
Q Consensus 73 l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~--~~g~-~sv~~l----~g~~~t~E~~~~~~k~~~~-lGt~nid~~ 144 (393)
.+|+++||+|.+++|++++|++||+.+|+++++. .+|+ ++|+++ .|+..++|+.|..+||++. +||+|++.+
T Consensus 115 ~~RL~~PLiR~~g~~~~iSWDeAld~iA~~lk~i~d~~Gp~~sv~~~~~d~gg~~~~~e~~y~~~k~~~~~lgt~ni~~~ 194 (676)
T cd02756 115 ETRLTTPLVRRGGQLQPTTWDDAIDLVARVIKGILDKDGNDDAVFASRFDHGGGGGGFENNWGVGKFFFMALQTPFVRIH 194 (676)
T ss_pred ccccCCceEccCCceeEccHHHHHHHHHHHHHHHHHHhCCccEEEEEeccCCCCCccchhhhHHHHHHHHhcCCCccccc
Confidence 3569999999999999999999999999999764 5899 999986 4667789999999999886 999999987
Q ss_pred CCCCccchhhhhh--hcccCCCCccCccccCEEEEecCCcCccccHHHH-HH-----------HHhhhcCC-----ceEE
Q psy14128 145 YAFPLEGAGTDLR--ANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNA-RI-----------RKGYLTNE-----LDVA 205 (393)
Q Consensus 145 ~~~~~~~~~~~~~--~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~-rl-----------r~a~~~~g-----akii 205 (393)
.+.|+.+.....+ ....++++++|+++||+||+||+|+.++||++.. ++ ++..+++| +|||
T Consensus 195 ~r~c~~s~~~~~~~~G~g~~~~~~~Die~Ad~Il~~G~Np~et~pv~~~~~~~~~l~~~~~~~kk~~~~~G~~~~~~klI 274 (676)
T cd02756 195 NRPAYNSEVHATREMGVGELNNSYEDARLADTIVLWGNNPYETQTVYFLNHWLPNLRGATVSEKQQWFPPGEPVPPGRII 274 (676)
T ss_pred CcCCcCcchhhHHhhcCCCCCCCHHHHHhCCEEEEECCChHHhCcchHhhhhhhhhhhHHHHHHHhhhhcCCCCCCCEEE
Confidence 7777654222222 1123566899999999999999999999997652 22 11122245 6999
Q ss_pred EEcCCCCcccc--c--------ccc----CCCHHHHHHHHc----------------------cHHHHHHHHHhCC----
Q psy14128 206 YIGPKVDLRYD--Y--------EHL----GESADLIKQLAS----------------------GSHAFSKKLAAAK---- 245 (393)
Q Consensus 206 vi~p~~~~~~~--~--------~~l----g~~~~~l~~l~~----------------------g~~~~a~~l~~a~---- 245 (393)
||||+.+.+.. . .|+ |+|.+++..|+. .++++|+.+++++
T Consensus 275 VVDPR~T~TA~~Ad~~~~~~~~lhL~I~PGTD~AL~~al~~~Iie~~~~~~e~aa~itGV~~e~I~~~A~~~a~ak~~~~ 354 (676)
T cd02756 275 VVDPRRTETVHAAEAAAGKDRVLHLQVNPGTDTALANAIARYIYESLDEVLAEAEQITGVPRAQIEKAADWIAKPKEGGY 354 (676)
T ss_pred EEeCCCcchhHhhhhhcccCcceEEeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhCccccc
Confidence 99998777733 1 444 677776655431 2688899999875
Q ss_pred --CCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccccccccCC--------Cc---------HHHHh-hc
Q psy14128 246 --KPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGS--------HA---------FSKKL-AA 305 (393)
Q Consensus 246 --~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G~~~~gg--------~~---------~~~~~-~~ 305 (393)
+.+|++++|+.++.++.....++.+|+.+|| ++++++.+.+.+|....|- .. +.+++ .+
T Consensus 355 ~~~~~i~~~~Gi~~~~~~~~~~~Ai~nL~llTG-niGrpG~G~~~~gg~~~g~~~p~~~~~~~~~~~~~~~~~~~~l~~G 433 (676)
T cd02756 355 RKRVMFEYEKGIIWGNDNYRPIYSLVNLAIITG-NIGRPGTGCVRQGGHQEGYVRPPPPPPPWYPQYQYAPYIDQLLISG 433 (676)
T ss_pred CCcEEEEecccceecccHHHHHHHHHHHHHHhC-CCCCCCCcccccCccccCCCCCCCCCCcccCccchHHHHHHHHhCC
Confidence 7899999999999999999999999999999 7999999998887654430 01 11222 45
Q ss_pred ccCcEEEEcCCCC-CCCChhh-------------------------------------------H-H-------------
Q psy14128 306 AKKPLIVVGADML-SRSDGAA-------------------------------------------V-L------------- 327 (393)
Q Consensus 306 ~~~al~v~g~np~-~~p~~~~-------------------------------------------v-~------------- 327 (393)
.+|++|++|+||+ +.||.+. + +
T Consensus 434 ~iK~l~v~g~NP~~s~pn~~~v~~al~~~~~~v~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~fvVv~D~~~teTa~~A 513 (676)
T cd02756 434 KGKVLWVIGCDPYKTTPNAQRLRETINHRSKLVTDAVEAALYAGTYDREAMVCLIGDAIQPGGLFIVVQDIYPTKLAEDA 513 (676)
T ss_pred CceEEEEecCChhhhCcCHHHHHHHHHhhhhhhhhhhhhccccccccchhhhhhhhhhccCCCCEEEEEecCCCchhhhC
Confidence 7899999999998 8888631 1 1
Q ss_pred ---------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhcc
Q psy14128 328 ---------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVA 361 (393)
Q Consensus 328 ---------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g 361 (393)
+|+|..+++++|||++|+||+|+ .++|++||
T Consensus 514 DvVLPaa~~~E~~gt~~n~~errv~~~~k~v~Ppgear~D~~I~---~~lA~rl~ 565 (676)
T cd02756 514 HVILPAAANGEMNETSMNGHERRLRLYEKFMDPPGEAMPDWWIA---AMIANRIY 565 (676)
T ss_pred cEEeCCCCccccCCeecccCCceEEEeccccCCCccCccHHHHH---HHHHHHHH
Confidence 68999999999999999999995 55555554
No 17
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=100.00 E-value=3e-32 Score=271.70 Aligned_cols=285 Identities=33% Similarity=0.407 Sum_probs=218.6
Q ss_pred chHHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCC
Q psy14128 67 HPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYA 146 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~ 146 (393)
.++..+.+|+++||+|.+++|++.+|++|+..++++|.+.. +++++++.|++.++|+.|.+++|++.+|++|+++...
T Consensus 46 ~~~~~~~~Rl~~Pl~r~~~~~~~isWdeAl~~ia~~l~~~~--~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~ 123 (386)
T cd02768 46 YDGLNSRQRLTQPLIKKGGKLVPVSWEEALKTVAEGLKAVK--GDKIGGIAGPRADLESLFLLKKLLNKLGSNNIDHRLR 123 (386)
T ss_pred hhccCCcccccCCeEecCCceeEcCHHHHHHHHHHHHHhcC--hhheEEEecCCCCHHHHHHHHHHHHHhCCCCchhhhc
Confidence 34566789999999999999999999999999999998653 2689999999999999999999999999999987654
Q ss_pred CCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCccccccccCCCHH-
Q psy14128 147 FPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESAD- 225 (393)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~~~~lg~~~~- 225 (393)
.+..............+.++.|+++||+||+||+|+.+++|+++.|+|++.+++|+||++|||+.+.+....|+...++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~~ad~~~~~~pg~ 203 (386)
T cd02768 124 QSDLPADNRLRGNYLFNTSIAEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDLIADLTYPVSPLG 203 (386)
T ss_pred cccCccccccccCcccCCCHHHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCccccccceEEEcCCch
Confidence 4332111111111234567899999999999999999999999999999976569999999997655433344432222
Q ss_pred ----HHHHHHc--cHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhC--CCcccCCCccccccccccCCC
Q psy14128 226 ----LIKQLAS--GSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVT--CESDHLGESADLIKQLASGSH 297 (393)
Q Consensus 226 ----~l~~l~~--g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg--~~~~~~~~~~n~~G~~~~gg~ 297 (393)
.+..+.. +..++++.|+++++++|++|.++. +.++.....++.+|...+| .+........|+.|....+ .
T Consensus 204 ~~~~~l~~~i~~~~~~~~a~~l~~a~~~~i~~g~~~~-~~~~~~~~~a~~~l~~~~G~~~~~~~~~~~~n~~g~~~~~-~ 281 (386)
T cd02768 204 ASLATLLDIAEGKHLKPFAKSLKKAKKPLIILGSSAL-RKDGAAILKALANLAAKLGTGAGLWNGLNVLNSVGARLGG-A 281 (386)
T ss_pred hHHHHHHHHHhhccHHHHHHHHhcCCCcEEEEcchhh-cCCcHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHHhc-C
Confidence 2223332 235899999999999999999999 8888899999999999975 2233344456766655543 2
Q ss_pred cHHHHhh----cccCcEEEEcCCCC-CCCChhh-------HH---------------------------------HHhhh
Q psy14128 298 AFSKKLA----AAKKPLIVVGADML-SRSDGAA-------VL---------------------------------ALVQQ 332 (393)
Q Consensus 298 ~~~~~~~----~~~~al~v~g~np~-~~p~~~~-------v~---------------------------------~~vq~ 332 (393)
...+++. +.++++|++|.||+ +.|+... ++ +++|.
T Consensus 282 ~~~~~~~~~~~~~i~~l~v~~~np~~~~p~~~~al~~~~~~Vv~d~~~teta~~ADvvLP~~~~~E~~g~~~~~~~~~~~ 361 (386)
T cd02768 282 GLDAGLALLEPGKAKLLLLGEDELDRSNPPAAVALAAADAFVVYQGHHGDTGAQADVILPAAAFTEKSGTYVNTEGRVQR 361 (386)
T ss_pred CHHHHhhhccCCceeEEEEcCCCccccChHHHHHHhcCCeEEEEeccCchhhhhCCEEeccCcccccCceEECCCCceEE
Confidence 4445552 35799999999998 8887532 11 89999
Q ss_pred hhhccCCCCCCCcchHHHHHHHH
Q psy14128 333 LAAKVTCESDVPCDWKVLNILQK 355 (393)
Q Consensus 333 ~~~av~~~g~~~~dw~i~~~l~~ 355 (393)
++++++|||++|+||+||..|++
T Consensus 362 ~~~~i~p~~~~~~d~~i~~~La~ 384 (386)
T cd02768 362 FKKAVSPPGDAREDWKILRALSN 384 (386)
T ss_pred eccccCCCccchhHHHHHHHHHh
Confidence 99999999999999999665554
No 18
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1e-31 Score=280.57 Aligned_cols=291 Identities=17% Similarity=0.163 Sum_probs=231.8
Q ss_pred chHHhhhhhcCCCEEEeCC-ceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHHHH-hCCCCcc
Q psy14128 67 HPFSKKLSAAKKPLIVVGA-DMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLLNK-LGSEDLY 142 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g~-~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~~~-lGt~nid 142 (393)
.++..+.+|+++||+|.|+ +|++++|++|+..++++|.+. +||+++++++.|+..++|+.+++++|++. +||+|++
T Consensus 46 ~~~~y~p~Rl~~Pl~R~~~~~~~~iSWdeAl~~ia~kl~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~l~~~~~gs~~~~ 125 (565)
T cd02754 46 HKTLNGPERLTRPLLRRNGGELVPVSWDEALDLIAERFKAIQAEYGPDSVAFYGSGQLLTEEYYAANKLAKGGLGTNNID 125 (565)
T ss_pred hhccCCcccccCCeEeCCCCCEEEccHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCccHHHHHHHHHHHHHhCCCCccc
Confidence 4567778999999999987 999999999999999999754 58999999999999999999999999986 9999998
Q ss_pred ccCCCCccchhhhhhhccc---CCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcC--CceEEEEcCCCCcccc-
Q psy14128 143 TEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTN--ELDVAYIGPKVDLRYD- 216 (393)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~--gakiivi~p~~~~~~~- 216 (393)
....+|......++...++ .++++.|+++||+||+||+|+.+++|....+++++.+ + |+|||+|||+.+.+..
T Consensus 126 ~~~~~c~~~~~~~~~~~~G~~~~~~~~~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~-~~~G~klividP~~t~ta~~ 204 (565)
T cd02754 126 TNSRLCMASAVAGYKRSFGADGPPGSYDDIEHADCFFLIGSNMAECHPILFRRLLDRKK-ANPGAKIIVVDPRRTRTADI 204 (565)
T ss_pred CCCcccchHHHHHHHhhccCCCCCCCHHHHhhCCEEEEECCChhhhhhHHHHHHHHHHh-cCCCCEEEEEcCCCCcchHH
Confidence 8777776543333333332 2456889999999999999999999999999998864 5 9999999998777633
Q ss_pred -c----cccCCCHHHHHHHHc--------------------------------------------cHHHHHHHHHhCCCC
Q psy14128 217 -Y----EHLGESADLIKQLAS--------------------------------------------GSHAFSKKLAAAKKP 247 (393)
Q Consensus 217 -~----~~lg~~~~~l~~l~~--------------------------------------------g~~~~a~~l~~a~~~ 247 (393)
. +.+|+|.+++..|+. .++++|+.|++++++
T Consensus 205 Ad~~l~i~PGtD~al~la~~~~ii~~~~~d~~fv~~~t~g~~~~~~~~~~~t~e~~a~itgv~~~~I~~lA~~~a~~~~~ 284 (565)
T cd02754 205 ADLHLPIRPGTDLALLNGLLHVLIEEGLIDRDFIDAHTEGFEELKAFVADYTPEKVAEITGVPEADIREAARLFGEARKV 284 (565)
T ss_pred hCeeeCCCCCccHHHHHHHHHHHHHCCCcCHHHHHHHhccHHHHHHHHhhCCHHHHHHHHCcCHHHHHHHHHHHHhCCCE
Confidence 2 335777765544321 157789999999999
Q ss_pred EEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCC-------ccccccccccC-------------------------
Q psy14128 248 LIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGE-------SADLIKQLASG------------------------- 295 (393)
Q Consensus 248 ~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~-------~~n~~G~~~~g------------------------- 295 (393)
+|++|.++.++.++.....++..|+..+| .++..+. .+|.+|...++
T Consensus 285 ~i~~g~g~~~~~~g~~~~~ai~~L~~l~G-~~g~~Ggg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (565)
T cd02754 285 MSLWTMGVNQSTQGTAANNAIINLHLATG-KIGRPGSGPFSLTGQPNAMGGREVGGLANLLPGHRSVNNPEHRAEVAKFW 363 (565)
T ss_pred EEEeCCccccchhHHHHHHHHHHHHHHhC-CCCCCCCCCCcCCCCCCCCcccccccCCccCCCCcCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999998 4555443 33555433221
Q ss_pred -----------CCcHHHHh----hcccCcEEEEcCCCC-CCCChhhHH--------------------------------
Q psy14128 296 -----------SHAFSKKL----AAAKKPLIVVGADML-SRSDGAAVL-------------------------------- 327 (393)
Q Consensus 296 -----------g~~~~~~~----~~~~~al~v~g~np~-~~p~~~~v~-------------------------------- 327 (393)
|.+..+++ .+.+|++|++|.||+ +.||.+.++
T Consensus 364 ~~~~~~~~~~~g~~~~~~~~~~~~g~ik~~~~~g~Np~~~~p~~~~~~~al~k~~fvV~~d~~~~t~ta~~ADivLP~~~ 443 (565)
T cd02754 364 GVPEGTIPPKPGLHAVEMFEAIEDGEIKALWVMCTNPAVSLPNANRVREALERLEFVVVQDAFADTETAEYADLVLPAAS 443 (565)
T ss_pred CCCccccCCCCCcCHHHHHHHHhcCCceEEEEeCCCccccCcCHHHHHHHHhCCCeEEEEecccCCchhhhccEEecCCc
Confidence 22333333 346899999999998 899876544
Q ss_pred ------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccc
Q psy14128 328 ------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAA 362 (393)
Q Consensus 328 ------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~ 362 (393)
+++|...++++|+|++|+||+| +.++|+++|.
T Consensus 444 ~~E~~~~~~~~~~~~~~~~~~i~p~ge~k~d~~i---~~~La~~lg~ 487 (565)
T cd02754 444 WGEKEGTMTNSERRVSLLRAAVEPPGEARPDWWI---LADVARRLGF 487 (565)
T ss_pred cccCCceEEcCCceEEEECCccCCccccCcHHHH---HHHHHHHhCC
Confidence 7899999999999999999999 5777788874
No 19
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=99.98 E-value=5.6e-31 Score=280.27 Aligned_cols=297 Identities=20% Similarity=0.257 Sum_probs=234.5
Q ss_pred chHHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHHHH-hCCCCccc
Q psy14128 67 HPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLLNK-LGSEDLYT 143 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~~~-lGt~nid~ 143 (393)
.+...+.+|+++||+|.+++|++++|++|++.++++|.+. ++|+++++++.|+..++|+.|++++|++. +|++|+++
T Consensus 45 ~~~~~~~~Rl~~P~~R~~g~~~~isWdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~~gs~~~~~ 124 (671)
T TIGR01591 45 WEFINSKDRLTTPLIREGDKFREVSWDEAISYIAEKLKEIKEKYGPDSIGFIGSSRGTNEENYLLQKLARAVIGTNNVDN 124 (671)
T ss_pred hhhcCCcccccCCeEcCCCCEEEccHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCcccHHHHHHHHHHHHhcCCccccC
Confidence 3455678999999999999999999999999999999754 57999999999999999999999999997 99999998
Q ss_pred cCCCCccchhhhhhhcc---cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcccc--cc
Q psy14128 144 EYAFPLEGAGTDLRANY---LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYD--YE 218 (393)
Q Consensus 144 ~~~~~~~~~~~~~~~~~---~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~--~~ 218 (393)
....|..+...++...+ ..+.++.|+++||+||+||+|+..++|.++.+++++. ++|+||++|||+.+.+.. ..
T Consensus 125 ~~~~~~~~~~~~~~~~~G~~~~~~~~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~-~~G~klvvidp~~s~ta~~ad~ 203 (671)
T TIGR01591 125 CARVCHGPSVAGLKQTVGIGAMSNTISEIENADLIVIIGYNPAESHPVVAQYLKNAK-RNGAKIIVIDPRKTETAKIADL 203 (671)
T ss_pred CCCceehhhhHHHHHhhCCCCCCCCHHHHHhCCEEEEECCChhhccCHHHHHHHHHH-HCCCeEEEECCCCChhhHhhCc
Confidence 77677543323333222 2345788999999999999999999999999999987 589999999998776643 33
Q ss_pred c----cCCCHHHHHHHHc--------------------------------------------cHHHHHHHHHhCCCCEEE
Q psy14128 219 H----LGESADLIKQLAS--------------------------------------------GSHAFSKKLAAAKKPLIV 250 (393)
Q Consensus 219 ~----lg~~~~~l~~l~~--------------------------------------------g~~~~a~~l~~a~~~~ii 250 (393)
| +|++..++.+|++ .++++|+.|+++++++|+
T Consensus 204 ~i~i~Pgtd~al~lal~~~li~~~~~d~~f~~~~t~gf~~~~~~~~~~t~e~~a~~~gv~~~~i~~lA~~l~~~~~~~i~ 283 (671)
T TIGR01591 204 HIPLKPGTDIALLNAMANVIIEEGLYDKAFIEKRTEGFEEFREIVKGYTPEYVEDITGVPADLIREAARMYAKAGSAAIL 283 (671)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHCCCcCHHHHHHHhhCHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHhhCCCeEEE
Confidence 3 4777665544320 146789999999999999
Q ss_pred EcCccccccCHHHHHHHHHHHHHHhCCCccc-------CCCccccccccccC----------------------------
Q psy14128 251 VGADMLSRSDGAAVLALVQQLAAKVTCESDH-------LGESADLIKQLASG---------------------------- 295 (393)
Q Consensus 251 ~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~-------~~~~~n~~G~~~~g---------------------------- 295 (393)
+|.++.++.++.....++.+|+.++| .++. +...+|..|....+
T Consensus 284 ~g~g~~~~~~g~~~~~a~~~L~~l~G-~~g~~G~g~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (671)
T TIGR01591 284 WGMGVTQHSQGVETVMALINLAMLTG-NIGKPGGGVNPLRGQNNVQGACDMGALPDFLPGYQPVSDEEVREKFAKAWGVV 362 (671)
T ss_pred ecCcccccchHHHHHHHHHHHHHHhC-CCCCCCCCCcccCCCCcCCCchhhccCcccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 99999999999999999999999987 3433 33445665543221
Q ss_pred ------CCcHHHHh----hcccCcEEEEcCCCC-CCCChhhHH-------------------------------------
Q psy14128 296 ------SHAFSKKL----AAAKKPLIVVGADML-SRSDGAAVL------------------------------------- 327 (393)
Q Consensus 296 ------g~~~~~~~----~~~~~al~v~g~np~-~~p~~~~v~------------------------------------- 327 (393)
|.++.+++ .+.++++|++|.||+ ++|+...++
T Consensus 363 ~~~~~~g~~~~~~~~~i~~g~i~~l~~~~~np~~~~~~~~~~~~al~k~~~~V~~d~~~~~ta~~ADiVLP~~~~~E~~g 442 (671)
T TIGR01591 363 KLPAEPGLRIPEMIDAAADGDVKALYIMGEDPLQSDPNTSKVRKALEKLELLVVQDIFMTETAKYADVVLPAAAWLEKEG 442 (671)
T ss_pred cCCCCCCCCHHHHHHHHhcCCceEEEEecCCccccCCCHHHHHHHHhCCCEEEEEecCCCchhhhCCEEecCCcccCCCc
Confidence 23334444 346899999999998 899876544
Q ss_pred ------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccccCCCCCC
Q psy14128 328 ------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKP 369 (393)
Q Consensus 328 ------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~~d~g~~~ 369 (393)
+++|..+++++|+|++|+||+| +..+|++|| .++.+.+
T Consensus 443 ~~~~~~~~~~~~~~~i~p~ge~r~~~~i---~~~La~~lg-~~~~~~~ 486 (671)
T TIGR01591 443 TFTNAERRIQRFFKAVEPKGESKPDWEI---IQELANALG-LDWNYNH 486 (671)
T ss_pred cEEcCCceEEEeccccCCCcCCCcHHHH---HHHHHHHhC-CCCCCCC
Confidence 8999999999999999999999 567777887 3555543
No 20
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=99.98 E-value=2.1e-31 Score=276.55 Aligned_cols=289 Identities=17% Similarity=0.174 Sum_probs=220.5
Q ss_pred chHHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHH-HHHHHH-HHHHHHhCCCCcc
Q psy14128 67 HPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADA-EAMVAL-KDLLNKLGSEDLY 142 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~-E~~~~~-~k~~~~lGt~nid 142 (393)
.++..+.+|+++||+|.|++|++++|++|++.++++|.+. +||+++++++.|+..++ |+.+.. ++|++.+|++|++
T Consensus 46 ~~~~~~pdRl~~Pl~R~~g~~~~isWdeAl~~ia~kl~~i~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~lG~~~~~ 125 (539)
T cd02762 46 GDYQNDPDRLRTPMRRRGGSFEEIDWDEAFDEIAERLRAIRARHGGDAVGVYGGNPQAHTHAGGAYSPALLKALGTSNYF 125 (539)
T ss_pred hhhccCchhccCCcEecCCceeEeCHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcccccchHHHHHHHHHHHhCCCccc
Confidence 3566788999999999999999999999999999999754 58999999988776666 555544 4777779999998
Q ss_pred ccCCCCccchhhhhhhccc--CCCCccCccccCEEEEecCCcCccccHHHH------HHHHhhhcCCceEEEEcCCCCcc
Q psy14128 143 TEYAFPLEGAGTDLRANYL--LNNKIAGAEEADLILLIGTNPRFEAPLFNA------RIRKGYLTNELDVAYIGPKVDLR 214 (393)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~--~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~------rlr~a~~~~gakiivi~p~~~~~ 214 (393)
.....|...........++ .+.++.|+++||+||+||+|+.+++|.++. +++++. ++|+||++|||+.+.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~G~~~~~~~~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~-~~G~kliviDPr~t~t 204 (539)
T cd02762 126 SAATADQKPGHFWSGLMFGHPGLHPVPDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAK-DRGGSLVVIDPRRTET 204 (539)
T ss_pred cccchhhhHHHHHHHHhcCCCCCCCchhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHH-hCCCEEEEECCCCchh
Confidence 7655565332222222222 345788999999999999999999997765 565554 6899999999988777
Q ss_pred cc--ccc----cCCCHHHHHHHHc------------------c--------------------------HHHHHHHHHhC
Q psy14128 215 YD--YEH----LGESADLIKQLAS------------------G--------------------------SHAFSKKLAAA 244 (393)
Q Consensus 215 ~~--~~~----lg~~~~~l~~l~~------------------g--------------------------~~~~a~~l~~a 244 (393)
+. ..| +|+|..++..|+. | ++++|+.|+++
T Consensus 205 a~~AD~~l~irPGtD~aL~~a~~~~ii~~~~~D~~fi~~~t~Gf~~~~~~~~~~t~e~~~~~tGv~~~~I~~lA~~~a~~ 284 (539)
T cd02762 205 AKLADEHLFVRPGTDAWLLAAMLAVLLAEGLTDRRFLAEHCDGLDEVRAALAEFTPEAYAPRCGVPAETIRRLAREFAAA 284 (539)
T ss_pred hHhcCEeeCcCCCcHHHHHHHHHHHHHHCCCCChHHHHHHcCcHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHhcC
Confidence 43 333 5777776544421 1 57889999999
Q ss_pred CCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccc------cc----------cc--cC------C-Cc-
Q psy14128 245 KKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLI------KQ----------LA--SG------S-HA- 298 (393)
Q Consensus 245 ~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~------G~----------~~--~g------g-~~- 298 (393)
++++|++|.|+.++.+|.....++..|+..|| +++..+++.++. |. +. .. + ..
T Consensus 285 ~~~~i~~g~G~~~~~~g~~~~~ai~~L~~ltG-~~g~~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (539)
T cd02762 285 PSAAVYGRLGVQTQLFGTLCSWLVKLLNLLTG-NLDRPGGAMFTTPALDLVGQTSGRTIGRGEWRSRVSGLPEIAGELPV 363 (539)
T ss_pred CceEEEECcccccccCcHHHHHHHHHHHHHhC-CCCCCCCccCCCCCCccccCCCcccccccccccccCCCCcccccCcH
Confidence 99999999999999999999999999999999 788877765331 10 00 00 1 11
Q ss_pred --HHHHh----hcccCcEEEEcCCCC-CCCChhhHH--------------------------------------------
Q psy14128 299 --FSKKL----AAAKKPLIVVGADML-SRSDGAAVL-------------------------------------------- 327 (393)
Q Consensus 299 --~~~~~----~~~~~al~v~g~np~-~~p~~~~v~-------------------------------------------- 327 (393)
+.+.+ ...+|++|++|.||+ +.|+...++
T Consensus 364 ~~l~~~i~~~~~~~ik~l~~~~~Np~~~~p~~~~~~~al~~ldf~V~~D~~~teTa~~ADiVLPa~~~~E~~d~~~~~~~ 443 (539)
T cd02762 364 NVLAEEILTDGPGRIRAMIVVAGNPVLSAPDGARLEAALGGLEFMVSVDVYMTETTRHADYILPPASQLEKPHATFFNLE 443 (539)
T ss_pred HHHHHHHhcCCCCceEEEEEeCCCccccCCCHHHHHHHHhcCCeEEEeecccCcchhhCCEEecCCCccccCCccccccc
Confidence 22333 235899999999999 999987655
Q ss_pred ---HHhhhhhhccCCCCCCCcchHHHHHHHHHH
Q psy14128 328 ---ALVQQLAAKVTCESDVPCDWKVLNILQKAA 357 (393)
Q Consensus 328 ---~~vq~~~~av~~~g~~~~dw~i~~~l~~~a 357 (393)
+++|...++++|||++|+||+|+..|++..
T Consensus 444 ~~~~~~~~~~~vi~P~ge~k~d~~I~~~La~rl 476 (539)
T cd02762 444 FPRNAFRYRRPLFPPPPGTLPEWEILARLVEAL 476 (539)
T ss_pred cceeEEEEeccccCCCCCCCcHHHHHHHHHHHH
Confidence 478889999999999999999976666554
No 21
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=99.98 E-value=3.3e-31 Score=273.56 Aligned_cols=289 Identities=20% Similarity=0.235 Sum_probs=228.5
Q ss_pred chHHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHHHH-hCCCCccc
Q psy14128 67 HPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLLNK-LGSEDLYT 143 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~~~-lGt~nid~ 143 (393)
.+...+.+|+++||+|.|++|++++|++|++.++++|.+. +||+++++++.|+..++|+.+++++|++. .||+++++
T Consensus 46 ~~~~y~p~Rl~~Pl~R~~~~~~~isWdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~g~s~~~~~ 125 (512)
T cd02753 46 FDFVNSKDRLTKPLIRKNGKFVEASWDEALSLVASRLKEIKDKYGPDAIAFFGSAKCTNEENYLFQKLARAVGGTNNVDH 125 (512)
T ss_pred hhhccCccccCCCEECCCCCEEEecHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcHHHHHHHHHHHHhcCCCccCC
Confidence 3456778999999999999999999999999999999764 57999999999998999999999999987 55788887
Q ss_pred cCCCCccchhhhhhhcc---cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcccc--cc
Q psy14128 144 EYAFPLEGAGTDLRANY---LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYD--YE 218 (393)
Q Consensus 144 ~~~~~~~~~~~~~~~~~---~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~--~~ 218 (393)
....|......++...+ ..+.++.|+++||+||+||+|+.+++|.+..+++++. ++|+||++|||+.+.+.. ..
T Consensus 126 ~~~~c~~~~~~~~~~~~G~~~~~~~~~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~-~~G~k~i~Idp~~s~ta~~Ad~ 204 (512)
T cd02753 126 CARLCHSPTVAGLAETLGSGAMTNSIADIEEADVILVIGSNTTEAHPVIARRIKRAK-RNGAKLIVADPRRTELARFADL 204 (512)
T ss_pred CcccccchhhHHHHhhcCCCCCCCCHHHHHhCCEEEEECCChhhhhHHHHHHHHHHH-HCCCeEEEEcCCCccchHhhCe
Confidence 66666543333333222 2345788999999999999999999999999999987 689999999998777743 34
Q ss_pred c----cCCCHHHHHHHHc--------------------------------------------cHHHHHHHHHhCCCCEEE
Q psy14128 219 H----LGESADLIKQLAS--------------------------------------------GSHAFSKKLAAAKKPLIV 250 (393)
Q Consensus 219 ~----lg~~~~~l~~l~~--------------------------------------------g~~~~a~~l~~a~~~~ii 250 (393)
| +|+|..++..++. .++++|+.|+++++++|+
T Consensus 205 ~l~i~PGtD~al~lal~~~l~~~~~~d~~fv~~~t~gf~~~~~~~~~~t~e~~~~~~gv~~~~i~~lA~~~~~~~~~~i~ 284 (512)
T cd02753 205 HLQLRPGTDVALLNAMAHVIIEEGLYDEEFIEERTEGFEELKEIVEKYTPEYAERITGVPAEDIREAARMYATAKSAAIL 284 (512)
T ss_pred eeCCCCCcHHHHHHHHHHHHHHCCCcCHHHHHHHhhhHHHHHHHHHhCCHHHHHHHhCcCHHHHHHHHHHHHhCCCeEEE
Confidence 4 4777665433320 147789999999999999
Q ss_pred EcCccccccCHHHHHHHHHHHHHHhCCCccc-------CCCccccccccccCCCcHHHHhhcccCcEEEEcCCCC-CCCC
Q psy14128 251 VGADMLSRSDGAAVLALVQQLAAKVTCESDH-------LGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADML-SRSD 322 (393)
Q Consensus 251 ~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~-------~~~~~n~~G~~~~gg~~~~~~~~~~~~al~v~g~np~-~~p~ 322 (393)
+|.++.++.++.....++..|+.++| .++. +...+|..|...++... ..+.+.++++|++|.||+ +.|+
T Consensus 285 ~g~g~~~~~~g~~~~~a~~~L~~l~G-~~~~~G~~~~~~~~~~~~~g~~~~~~~~--~~~~~~i~~l~~~~~Np~~~~p~ 361 (512)
T cd02753 285 WGMGVTQHSHGTDNVMALSNLALLTG-NIGRPGTGVNPLRGQNNVQGACDMGALP--NVLPGYVKALYIMGENPALSDPN 361 (512)
T ss_pred eCchhhhhhhHHHHHHHHHHHHHHhC-CCCCCCCCcCccCCCCCCCCCcccccCC--ccCCceeEEEEEecCChhhcCcC
Confidence 99999999999999999999999998 3443 33344555655443221 122233899999999998 8898
Q ss_pred hhhHH-------------------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHh
Q psy14128 323 GAAVL-------------------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQ 359 (393)
Q Consensus 323 ~~~v~-------------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~ 359 (393)
...++ +++|..+++++|+|++|+||+| +.++|++
T Consensus 362 ~~~~~~al~~~~~~V~~d~~~t~ta~~ADvvLP~~~~~E~~~~~~~~~~~~~~~~~~i~p~ge~~~~~~i---~~~La~~ 438 (512)
T cd02753 362 TNHVRKALESLEFLVVQDIFLTETAELADVVLPAASFAEKDGTFTNTERRVQRVRKAVEPPGEARPDWEI---IQELANR 438 (512)
T ss_pred HHHHHHHHhCCCeEEEEecccCcchhhhhEEecCCccCccCeeEECCCCeEEeeccccCCccccCCHHHH---HHHHHHH
Confidence 76544 8999999999999999999999 5777777
Q ss_pred ccc
Q psy14128 360 VAA 362 (393)
Q Consensus 360 ~g~ 362 (393)
+|.
T Consensus 439 lg~ 441 (512)
T cd02753 439 LGY 441 (512)
T ss_pred hCC
Confidence 774
No 22
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=99.97 E-value=7.3e-31 Score=268.65 Aligned_cols=276 Identities=18% Similarity=0.135 Sum_probs=221.2
Q ss_pred chHHhhhhhcCCCEEEeC----CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEc-CcccHHHHHHHHH-HHHHHhCC
Q psy14128 67 HPFSKKLSAAKKPLIVVG----ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVV-GSLADAEAMVALK-DLLNKLGS 138 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g----~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~-g~~~t~E~~~~~~-k~~~~lGt 138 (393)
.+...+.+|+++||+|.| ++|++++|++|++.++++|.+. .+|+++++++. ++..++|+.|+++ +|++.+|+
T Consensus 46 ~~~~y~pdRl~~Pl~R~g~rG~g~~~~isWdeAl~~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~~Gs 125 (477)
T cd02759 46 PEIVYHPDRLLYPLKRVGERGENKWERISWDEALDEIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGS 125 (477)
T ss_pred HhhhcCchhhccCceecCCCCCCcEEEecHHHHHHHHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHHhcCC
Confidence 456678899999999974 6899999999999999999764 48999999874 5888899988887 69999999
Q ss_pred CCccccCCCCccchhhhhhhc--ccCCCCccCccccCEEEEecCCcCcccc-HHHHHHHHhhhcCCceEEEEcCCCCccc
Q psy14128 139 EDLYTEYAFPLEGAGTDLRAN--YLLNNKIAGAEEADLILLIGTNPRFEAP-LFNARIRKGYLTNELDVAYIGPKVDLRY 215 (393)
Q Consensus 139 ~nid~~~~~~~~~~~~~~~~~--~~~~~~~~~ie~AD~IL~iG~n~~~~~p-~l~~rlr~a~~~~gakiivi~p~~~~~~ 215 (393)
+|+++....|........... ...+.++.|+++||+||+||+|+.+++| ....+++++. ++|+||++|||+.+.+.
T Consensus 126 ~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar-~~g~klividpr~s~ta 204 (477)
T cd02759 126 PNLFLSGESCYWPRDMAHALTTGFGLGYDEPDWENPECIVLWGKNPLNSNLDLQGHWLVAAM-KRGAKLIVVDPRLTWLA 204 (477)
T ss_pred CcccCCcccchHHHHHHHHHhhccCCCCCchhhhcCCEEEEEccChhhhCcHHHHHHHHHHH-HCCCEEEEECCCCChhh
Confidence 999987777764322222222 2335578899999999999999999999 9999998876 58999999999877663
Q ss_pred c--ccc----cCCCHHHHHHHHc--------------------------------------------cHHHHHHHHHhCC
Q psy14128 216 D--YEH----LGESADLIKQLAS--------------------------------------------GSHAFSKKLAAAK 245 (393)
Q Consensus 216 ~--~~~----lg~~~~~l~~l~~--------------------------------------------g~~~~a~~l~~a~ 245 (393)
. ..| +|+|..++..|+. .++++|+.|++++
T Consensus 205 ~~Ad~~l~i~PGtD~al~~al~~~i~~~~~~d~~f~~~~t~g~~~~~~~~~~~t~e~~~~itGv~~~~i~~lA~~~a~~~ 284 (477)
T cd02759 205 ARADLWLPIRPGTDAALALGMLNVIINEGLYDKDFVENWCYGFEELAERVQEYTPEKVAEITGVPAEKIRKAARLYATAK 284 (477)
T ss_pred HhhCeeeccCCCcHHHHHHHHHHHHHHCCCcCHHHHHHHhccHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhCC
Confidence 3 333 4677665433310 1577899999999
Q ss_pred CCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccccccccCCCcHHHHhhcccCcEEEEcCCCC-CCCChh
Q psy14128 246 KPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADML-SRSDGA 324 (393)
Q Consensus 246 ~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G~~~~gg~~~~~~~~~~~~al~v~g~np~-~~p~~~ 324 (393)
+++|++|.++.++.++.....++..|..++| +++..+.+... ...+|++|++|.||+ ++|+..
T Consensus 285 ~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G-~i~~~Gg~~~~---------------~~~ik~l~v~g~Np~~~~p~~~ 348 (477)
T cd02759 285 PACIQWGLAIDQQKNGTQTSRAIAILRAITG-NLDVPGGNLLI---------------PYPVKMLIVFGTNPLASYADTA 348 (477)
T ss_pred CeEEEcCCcceeccchHHHHHHHHHHHHHhC-CCCCCCCccCC---------------CCCcEEEEEeCCCccccCCCHH
Confidence 9999999999999999999999999999999 56666543221 346899999999999 999976
Q ss_pred hHH---------------------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHh
Q psy14128 325 AVL---------------------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQ 359 (393)
Q Consensus 325 ~v~---------------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~ 359 (393)
.++ +++|...++++|||++|+||+| +.++|++
T Consensus 349 ~~~~al~~~~~vV~~d~~~teTa~~ADvVLP~~~~~E~~g~~~~~~~~~~~~~~~~~i~P~ge~r~d~~I---~~~La~~ 425 (477)
T cd02759 349 PVLEALKALDFIVVVDLFMTPTAMLADIVLPVAMSLERPGLRGGFEAENFVQLRQKAVEPYGEAKSDYEI---VLELGKR 425 (477)
T ss_pred HHHHHHhcCCeEEEEecCcCchHhhCCEEecCccccccccccccccccceEEEeccccCCCCCCcCHHHH---HHHHHHH
Confidence 654 6788999999999999999999 5666777
Q ss_pred ccc
Q psy14128 360 VAA 362 (393)
Q Consensus 360 ~g~ 362 (393)
+|.
T Consensus 426 lg~ 428 (477)
T cd02759 426 LGP 428 (477)
T ss_pred hCC
Confidence 774
No 23
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=99.97 E-value=1.4e-30 Score=282.10 Aligned_cols=297 Identities=12% Similarity=0.053 Sum_probs=230.5
Q ss_pred HHccC--chHHhhhhhcCCCEEEeC-------CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVG-------ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALK 130 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g-------~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~ 130 (393)
+.+|. .++..+.+|+++||+|.+ ++|++++|++||..+|++|.+. +||+++++++.+++.++|+.|.++
T Consensus 82 C~kG~~~~~~~~~pdRl~~Pl~R~~~g~~~g~g~~~~iSWDeAl~~iA~kl~~i~~~~G~~si~~~gsg~~~~~~~~~~~ 161 (830)
T TIGR01706 82 CIKGYFLSKIMYGQDRLTQPLLRMKDGKYDKDGEFTPVSWDQAFDEMEEQFKRALKEKGPTAIGMFGSGQWTIWEGYAAL 161 (830)
T ss_pred CcchhhhhhhcCCcchhcCCEEecCCCCcccCCCeeEcCHHHHHHHHHHHHHHHHHHhCCceEEEEecCCcchHHHHHHH
Confidence 45553 567788999999999973 6899999999999999999754 589999999988999999999999
Q ss_pred HHHHH-hCCCCccccCCCCccchhhhhhhccc---CCCCccCccccCEEEEecCCcCccccHHHHHHHHhhh-cCCceEE
Q psy14128 131 DLLNK-LGSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYL-TNELDVA 205 (393)
Q Consensus 131 k~~~~-lGt~nid~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~-~~gakii 205 (393)
+|++. +|++|+|+....|+.+...++..+++ .+.++.|+++||+||+||+|+.+++|+...+++++.. ++|+|||
T Consensus 162 ~~~~~~~gt~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~~~Di~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~Gakli 241 (830)
T TIGR01706 162 KLMKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVV 241 (830)
T ss_pred HHHHhhcCCCcccCCcccccchhHHHHHHhcCCCCCCCCHhHHhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEE
Confidence 99986 99999998777787654444443333 2446789999999999999999999999999876543 3699999
Q ss_pred EEcCCCCcccc--ccc----cCCCHHHHHHHH------------------c-----------------------------
Q psy14128 206 YIGPKVDLRYD--YEH----LGESADLIKQLA------------------S----------------------------- 232 (393)
Q Consensus 206 vi~p~~~~~~~--~~~----lg~~~~~l~~l~------------------~----------------------------- 232 (393)
||||+.+.+.. ..| +|+|.+++..|+ .
T Consensus 242 viDPr~t~ta~~Ad~~l~irPGTD~AL~lam~~~ii~~~~~D~~Fv~~~t~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 321 (830)
T TIGR01706 242 VLSTFTHRSFDLADIGIIFKPQTDLAILNYIANYIIQNNAVNMDFVNKHTVFKTGATDIGYGLRPDHPLEKAAKNADDPA 321 (830)
T ss_pred EECCCCCchhHHhCeeeccCCCCHHHHHHHHHHHHHHCCCccHHHHHHHhcccccccccccccccccccccccccccccc
Confidence 99997776633 233 466665432221 0
Q ss_pred -----c--------------------------HHHHHHHHHhCC-CCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 233 -----G--------------------------SHAFSKKLAAAK-KPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 233 -----g--------------------------~~~~a~~l~~a~-~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
| ++++|+.|++++ +++|++|.++.++.++.....++.+|+.+|| +++
T Consensus 322 ~~~~~~f~~l~~~~~~~tpe~aa~itGVpa~~I~~lA~~~a~~~~~~~i~~g~G~~~~~~g~~~~rai~~L~altG-nig 400 (830)
T TIGR01706 322 ATSLSTFEEFKKFVAPYTLEKTSELSGVPKAKLEQLAELYADPNRKVMSLWTMGFNQHTRGVWANNMVYNLHLLTG-KIA 400 (830)
T ss_pred ccccCcHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHhccCCCEEEEEcchhhhhhHHHHHHHHHHHHHHHhC-CCC
Confidence 1 577899999875 5777899999999999999999999999999 677
Q ss_pred cCCCcc-------ccccc-cccC------------------------------------CCcHHHHh----hcccCcEEE
Q psy14128 281 HLGESA-------DLIKQ-LASG------------------------------------SHAFSKKL----AAAKKPLIV 312 (393)
Q Consensus 281 ~~~~~~-------n~~G~-~~~g------------------------------------g~~~~~~~----~~~~~al~v 312 (393)
..+.+. |++|. ..++ |....+++ .+.+|++|+
T Consensus 401 ~~Ggg~~~~~g~~~~~g~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ik~l~~ 480 (830)
T TIGR01706 401 TPGNSPFSLTGQPSACGTAREVGTFSHRLPADMVVTNPKHREIAEKIWKIPAGTIPEKPGLHAVAQDRALKDGKLNFYWV 480 (830)
T ss_pred CCCCCcCcCcCCcCcCcchhhhhhccccCCCCcCCCCHHHHHHHHHHhCCCcccCCCCCCCCHHHHHHHHhCCCceEEEE
Confidence 766653 43441 1110 22223333 356999999
Q ss_pred EcCCCC-CCCChh-hHH--------------------------------------------HHhhhhhhccCCCCCCCcc
Q psy14128 313 VGADML-SRSDGA-AVL--------------------------------------------ALVQQLAAKVTCESDVPCD 346 (393)
Q Consensus 313 ~g~np~-~~p~~~-~v~--------------------------------------------~~vq~~~~av~~~g~~~~d 346 (393)
+|.||+ ++||.+ .++ +++|...++++|||++|+|
T Consensus 481 ~g~Np~~~~p~~~~~~~~a~~~~~df~Vv~D~f~teTa~~ADiVLPa~t~~E~~~~~~~~~r~~~~~~~~v~P~gear~d 560 (830)
T TIGR01706 481 QVNNNMQAGPNINEERLPGYRNPDNFIVVSDAYPTVTALAADLILPSAMWVEKEGAYGNAERRTQVWHQQVLAPGEARSD 560 (830)
T ss_pred ccCChhhcCccchHHHHHHHhCCCCeEEEecCccCcchhhCCEEeCCCcccccCceEEcCCceEEeeccccCCCcccchH
Confidence 999998 999977 332 5799999999999999999
Q ss_pred hHHHHHHHHHHHhccc
Q psy14128 347 WKVLNILQKAASQVAA 362 (393)
Q Consensus 347 w~i~~~l~~~a~~~g~ 362 (393)
|+| +.++|++||.
T Consensus 561 ~~I---~~~LA~rlG~ 573 (830)
T TIGR01706 561 LWQ---LVEFSKRFKT 573 (830)
T ss_pred HHH---HHHHHHHhCc
Confidence 999 6777777774
No 24
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=99.97 E-value=1.6e-30 Score=282.01 Aligned_cols=297 Identities=12% Similarity=0.076 Sum_probs=229.4
Q ss_pred HHccC--chHHhhhhhcCCCEEEeC-------CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVG-------ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALK 130 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g-------~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~ 130 (393)
|.+|. .++..+.+|+++||+|.| ++|++++|++||+.+|++|.+. +||+++|+++.|++.++|+.|.++
T Consensus 82 C~kG~~~~~~~y~~~Rl~~Pl~R~~rG~~~~~g~~~~isWdeAl~~iA~~l~~i~~~~G~~~i~~~~~g~~~~~~~~~~~ 161 (830)
T PRK13532 82 CIKGYFLSKIMYGKDRLTQPLLRMKDGKYDKEGEFTPVSWDQAFDVMAEKFKKALKEKGPTAVGMFGSGQWTIWEGYAAS 161 (830)
T ss_pred CccccchhhccCCcccccCCEEecCCCCcccCCCeEEecHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCcchHHHHHHH
Confidence 45553 557788999999999963 7899999999999999999764 589999999988999999999999
Q ss_pred HHHHH-hCCCCccccCCCCccchhhhhhhccc---CCCCccCccccCEEEEecCCcCccccHHHHHHHHhhh-cCCceEE
Q psy14128 131 DLLNK-LGSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYL-TNELDVA 205 (393)
Q Consensus 131 k~~~~-lGt~nid~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~-~~gakii 205 (393)
||++. +|++|+|+..+.|+.....++..+++ .+.++.|+++||+||+||+|+.+++|+...+++++.. ++|+|||
T Consensus 162 ~~~~~~~g~~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~~~Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kii 241 (830)
T PRK13532 162 KLMKAGFRSNNIDPNARHCMASAVVGFMRTFGIDEPMGCYDDIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVA 241 (830)
T ss_pred HHHHhccCCCcccCCccccchhHHHHHHHhhCCCCCCCCHHHHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEE
Confidence 99986 99999998777787654444443333 2456789999999999999999999999999876542 4799999
Q ss_pred EEcCCCCcccc--cc----ccCCCHHHHHHHH------------------c-----------------------------
Q psy14128 206 YIGPKVDLRYD--YE----HLGESADLIKQLA------------------S----------------------------- 232 (393)
Q Consensus 206 vi~p~~~~~~~--~~----~lg~~~~~l~~l~------------------~----------------------------- 232 (393)
||||+.+.++. .. .+|+|.+++..|+ .
T Consensus 242 viDPr~t~ta~~ad~~l~irPGtD~al~~am~~~ii~~~~~D~~Fv~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~a~~~ 321 (830)
T PRK13532 242 VLSTFEHRSFELADNGIIFTPQTDLAILNYIANYIIQNNAVNWDFVNKHTNFRKGATDIGYGLRPTHPLEKAAKNPGTAG 321 (830)
T ss_pred EECCCCCchhHhcCeeeccCCCCcHHHHHHHHHHHHHCCcccHHHHHHHhcccccccccccccccccccccccccccccc
Confidence 99998766633 23 3467765432220 0
Q ss_pred -----c--------------------------HHHHHHHHHhCC-CCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 233 -----G--------------------------SHAFSKKLAAAK-KPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 233 -----g--------------------------~~~~a~~l~~a~-~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
| ++++|+.|++++ +++|.+|+++.++.++.....++.+|+.+|| +++
T Consensus 322 ~~~~~~f~~l~~~~~~~tpe~aa~itGV~a~~I~~lA~~~a~~~~~~~i~~g~G~~~~~~g~~~~~ai~~L~altG-nig 400 (830)
T PRK13532 322 KSEPISFEEFKKFVAPYTLEKTAKMSGVPKEQLEQLAKLYADPNRKVVSFWTMGFNQHTRGVWANNLVYNIHLLTG-KIS 400 (830)
T ss_pred ccccchHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHhccCCcEEEEEccccccchhHHHHHHHHHHHHHHhC-CCC
Confidence 1 577899999876 4678899999999999999999999999999 677
Q ss_pred cCCCcc-------ccccc-cccC------------------------------------CCcHHHHh----hcccCcEEE
Q psy14128 281 HLGESA-------DLIKQ-LASG------------------------------------SHAFSKKL----AAAKKPLIV 312 (393)
Q Consensus 281 ~~~~~~-------n~~G~-~~~g------------------------------------g~~~~~~~----~~~~~al~v 312 (393)
..+++. |.+|. ..++ |.+..+++ .+.+|++|+
T Consensus 401 ~~Ggg~~~~~g~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ik~l~~ 480 (830)
T PRK13532 401 TPGNGPFSLTGQPSACGTAREVGTFSHRLPADMVVTNPKHREIAEKIWKLPEGTIPPKPGYHAVAQDRMLKDGKLNAYWV 480 (830)
T ss_pred CCCCCcCCCCCCcccccchhhhhhCcccCCCCCcCCCHHHHHHHHHHhCCCcccCCCCCCCCHHHHHHHHhCCCceEEEE
Confidence 777652 33331 1111 11112222 356899999
Q ss_pred EcCCCC-CCCChhh-HH--------------------------------------------HHhhhhhhccCCCCCCCcc
Q psy14128 313 VGADML-SRSDGAA-VL--------------------------------------------ALVQQLAAKVTCESDVPCD 346 (393)
Q Consensus 313 ~g~np~-~~p~~~~-v~--------------------------------------------~~vq~~~~av~~~g~~~~d 346 (393)
+|.||+ +.||.+. ++ +++|..+++++|||++|+|
T Consensus 481 ~g~Np~~~~p~~~~~~~~al~~~~~f~Vv~D~~~teTa~~ADiVLPaat~~E~~~~~~~~~~~~~~~~~~v~P~gear~d 560 (830)
T PRK13532 481 MCNNNMQAGPNINEERLPGWRNPDNFIVVSDPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVKAPGEAKSD 560 (830)
T ss_pred cCCCccccCcCccHHHHHHHhCCCCCEEEECCcCCcchhhCCEEeCCCcccccCcceecccceEEEecccCCCCcccchH
Confidence 999998 9999766 44 5788899999999999999
Q ss_pred hHHHHHHHHHHHhccc
Q psy14128 347 WKVLNILQKAASQVAA 362 (393)
Q Consensus 347 w~i~~~l~~~a~~~g~ 362 (393)
|+| +.++|.+||.
T Consensus 561 ~~I---~~~LA~rlG~ 573 (830)
T PRK13532 561 LWQ---LVEFSKRFKT 573 (830)
T ss_pred HHH---HHHHHHHhCC
Confidence 999 5777777764
No 25
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=99.97 E-value=1.1e-30 Score=266.08 Aligned_cols=279 Identities=16% Similarity=0.140 Sum_probs=220.4
Q ss_pred HHccC--chHHhhhhhcCCCEEEeC----CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcC-cccHHHHHHHHHHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVG----ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVG-SLADAEAMVALKDL 132 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g----~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g-~~~t~E~~~~~~k~ 132 (393)
+.+|. .++..+.+|+++||+|.| ++|++++|++|++.++++|++. .+|+++++++.| +..+.|..+.+++|
T Consensus 51 C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~~isWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~ 130 (461)
T cd02750 51 CQRGASFSWYLYSPDRVKYPLKRVGARGEGKWKRISWDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRF 130 (461)
T ss_pred chhhhhhHhhhcChhhhccceeeccCCCCCceEEecHHHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHH
Confidence 55553 567788999999999985 7899999999999999999753 589999998876 44566777888999
Q ss_pred HHHhCCCCccccCCCCccchhhhhhhccc---CCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 133 LNKLGSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 133 ~~~lGt~nid~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
++.+|++|+++....|... .+....++ .+.++.|+++||+||+||+|+.+++|....+++++. ++|+||++|||
T Consensus 131 ~~~~Gs~~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar-~~GaklividP 207 (461)
T cd02750 131 ASLIGGVSLSFYDWYGDLP--PGSPQTWGEQTDVPESADWYNADYIIMWGSNVPVTRTPDAHFLTEAR-YNGAKVVVVSP 207 (461)
T ss_pred HHhcCCccCCCCCcccchh--hhhhhhcCCCCCCCChhHHhcCcEEEEECCChHHccCchHHHHHHHH-HCCCEEEEEcC
Confidence 9999999998765444321 22222222 245688999999999999999999999989998875 68999999999
Q ss_pred CCCcccc--c----cccCCCHHHHHHHHc--------------------------------------cHHHHHHHHHhCC
Q psy14128 210 KVDLRYD--Y----EHLGESADLIKQLAS--------------------------------------GSHAFSKKLAAAK 245 (393)
Q Consensus 210 ~~~~~~~--~----~~lg~~~~~l~~l~~--------------------------------------g~~~~a~~l~~a~ 245 (393)
+.+.+.. . +.+|+|..++..|+. .++++|+.|++++
T Consensus 208 r~s~ta~~Ad~~l~i~PGtD~al~lal~~~i~~~~~~d~~fl~~~t~~~~~v~t~e~~~~~~Gv~~~~I~~~A~~~a~a~ 287 (461)
T cd02750 208 DYSPSAKHADLWVPIKPGTDAALALAMAHVIIKEKLYDEDYLKEYTDLPFLVYTPAWQEAITGVPRETVIRLAREFATNG 287 (461)
T ss_pred CCCcchhhcCEEeccCCCcHHHHHHHHHHHHHHcCCccHHHHHHhcCChhhcCCHHHHHHHHCcCHHHHHHHHHHHHhcC
Confidence 8777633 2 335777765544321 1577899999999
Q ss_pred CCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccccccccCCCcHHHHhhcccCcEEEEcCCCC-CCCChh
Q psy14128 246 KPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADML-SRSDGA 324 (393)
Q Consensus 246 ~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G~~~~gg~~~~~~~~~~~~al~v~g~np~-~~p~~~ 324 (393)
+++|++|.++.++.++.....++..|...+| +++..+.+..+. .+.+|++|++|.||+ ++||..
T Consensus 288 ~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G-~~g~~Ggg~~~~--------------~g~ik~~~~~g~Np~~~~p~~~ 352 (461)
T cd02750 288 RSMIIVGAGINHWYHGDLCYRALILLLALTG-NEGKNGGGWAHY--------------VGQPRVLFVWRGNLFGSSGKGH 352 (461)
T ss_pred CcEEEeCCCcccccCchHHHHHHHHHHHHhC-CCCCCCCccccC--------------CCCceEEEEeCCChHhhCcCHh
Confidence 9999999999999999999999999999999 677766543211 123799999999998 888875
Q ss_pred hHH----------------------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHH
Q psy14128 325 AVL----------------------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAAS 358 (393)
Q Consensus 325 ~v~----------------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~ 358 (393)
.++ +++|..+++++|||++||||+| +..+|+
T Consensus 353 ~~~~~a~~~~ldf~V~~d~~~teTa~~ADvVLP~~~~~E~~~~~~~~~~~~~~~~~~~i~p~gear~d~~I---~~~La~ 429 (461)
T cd02750 353 EYFEDAPEGKLDLIVDLDFRMDSTALYSDIVLPAATWYEKHDLSTTDMHPFIHPFSPAVDPLWEAKSDWEI---FKALAK 429 (461)
T ss_pred HHHHhhhhccCCEEEEEecCCCcccccCcEEEecCCCcccCCccccCCCceEEEcccccCCCccCcCHHHH---HHHHHH
Confidence 541 7899999999999999999999 566677
Q ss_pred hcc
Q psy14128 359 QVA 361 (393)
Q Consensus 359 ~~g 361 (393)
+++
T Consensus 430 ~l~ 432 (461)
T cd02750 430 KVP 432 (461)
T ss_pred hcC
Confidence 775
No 26
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=99.97 E-value=1.1e-29 Score=258.36 Aligned_cols=282 Identities=17% Similarity=0.128 Sum_probs=217.3
Q ss_pred HHccC--chHHhhhhhcCCCEEEe----CCceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVV----GADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLL 133 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~----g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~ 133 (393)
+.+|. .++..+.+|+++||+|. +++|++++|++|+..++++|.+. +||+++++.+.+... +.+++++|+
T Consensus 40 C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~~iSWdeAl~~ia~~l~~~~~~~G~~~i~~~~~~~~---~~~~~~~~~ 116 (454)
T cd02755 40 CARGNAGIQLLYDPDRLKKPLIRVGERGEGKFREASWDEALQYIASKLKEIKEQHGPESVLFGGHGGC---YSPFFKHFA 116 (454)
T ss_pred CccchhhHhhhCCcchhcCCeeecCCCCCCeEEEeCHHHHHHHHHHHHHHHHHhcCCcEEEEEecCCc---ccHHHHHHH
Confidence 44453 45677889999999998 46899999999999999999764 579999887766543 457789999
Q ss_pred HHhCCCCccccCCCCccchhhhhhhcc--cCCCCccCccccCEEEEecCCcCccccH-HHHHHHHhhhcCCceEEEEcCC
Q psy14128 134 NKLGSEDLYTEYAFPLEGAGTDLRANY--LLNNKIAGAEEADLILLIGTNPRFEAPL-FNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 134 ~~lGt~nid~~~~~~~~~~~~~~~~~~--~~~~~~~~ie~AD~IL~iG~n~~~~~p~-l~~rlr~a~~~~gakiivi~p~ 210 (393)
+.+|++|++.....|..+...+....+ ..+.+..|+++||+||+||+|+.++++. ...+++++. ++|+|+++|||+
T Consensus 117 ~~lGt~n~~~~~~~c~~~~~~~~~~~~g~~~~~~~~d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~-~~g~kiivIdPr 195 (454)
T cd02755 117 AAFGSPNIFSHESTCLASKNLAWKLVIDSFGGEVNPDFENARYIILFGRNLAEAIIVVDARRLMKAL-ENGAKVVVVDPR 195 (454)
T ss_pred HHhCCCCCCCccccchhHHHHHHHHHhhccCCCCCcchhcCCEEEEECcCcccccccHHHHHHHHHH-HCCCeEEEECCC
Confidence 999999998766677654333333321 2345688999999999999999999864 678888886 589999999998
Q ss_pred CCcccc--ccc----cCCCHHHHHHHHc---------------------------------------c-----HHHHHHH
Q psy14128 211 VDLRYD--YEH----LGESADLIKQLAS---------------------------------------G-----SHAFSKK 240 (393)
Q Consensus 211 ~~~~~~--~~~----lg~~~~~l~~l~~---------------------------------------g-----~~~~a~~ 240 (393)
.+.+.. ..| +|+|..++..++. | ++++|+.
T Consensus 196 ~t~ta~~AD~~i~i~PGtD~al~~a~~~~ii~~~~~d~~fi~~~t~g~~~~~~~~~~~t~e~~~~~~gv~~~~i~~~A~~ 275 (454)
T cd02755 196 FSELASKADEWIPIKPGTDLAFVLALIHVLISENLYDAAFVEKYTNGFELLKAHVKPYTPEWAAQITDIPADTIRRIARE 275 (454)
T ss_pred CChhhHhhCEecCCCCCcHHHHHHHHHHHHHHcCCccHHHHHHHccCHHHHHHHHhcCCHHHHHHHHCCCHHHHHHHHHH
Confidence 777733 333 4677665443311 1 5778999
Q ss_pred HHh-CCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccccccccCCCcHHHHhhcccCcEEEEcCCCC-
Q psy14128 241 LAA-AKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADML- 318 (393)
Q Consensus 241 l~~-a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G~~~~gg~~~~~~~~~~~~al~v~g~np~- 318 (393)
|++ +++.+|++|.+..++.++.....++..|+.++| .++..+......+ .. ...+|++|++|.||+
T Consensus 276 ~a~~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~ltG-~ig~~Gg~~~~~~------~~-----~~~ik~l~~~~~Np~~ 343 (454)
T cd02755 276 FAAAAPHAVVDPGWRGTFYSNSFQTRRAIAIINALLG-NIDKRGGLYYAGS------AK-----PYPIKALFIYRTNPFH 343 (454)
T ss_pred HHhhCCCEEEECCccccccCchHHHHHHHHHHHHHhC-CCCCCCCcccCCC------CC-----CCCceEEEEcCCCccc
Confidence 998 567888889999988899999999999999999 5777654322110 00 356899999999998
Q ss_pred CCCChhhHH----------------------------------------------HHhhhhhhccCCCCCCCcchHHHHH
Q psy14128 319 SRSDGAAVL----------------------------------------------ALVQQLAAKVTCESDVPCDWKVLNI 352 (393)
Q Consensus 319 ~~p~~~~v~----------------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~ 352 (393)
+.|+...++ ++++...++++|||++|+||+|
T Consensus 344 ~~p~~~~~~~al~~l~f~V~~d~~~teTa~~ADiVLP~~~~~E~~~~~~~~~~~~~~~~~~~~~v~P~ge~r~d~~i--- 420 (454)
T cd02755 344 SMPDRARLIKALKNLDLVVAIDILPSDTALYADVILPEATYLERDEPFSDKGGPAPAVATRQRAIEPLYDTRPGWDI--- 420 (454)
T ss_pred ccCCHHHHHHHHhcCCeEEEEeCCcCchHhhCCEEeCCCccccccccccccCCCcceeEEecccCCCCcCCcCHHHH---
Confidence 999987654 3678888999999999999999
Q ss_pred HHHHHHhccc
Q psy14128 353 LQKAASQVAA 362 (393)
Q Consensus 353 l~~~a~~~g~ 362 (393)
+.++|+++|.
T Consensus 421 ~~~la~~lg~ 430 (454)
T cd02755 421 LKELARRLGL 430 (454)
T ss_pred HHHHHHHhCC
Confidence 5777788874
No 27
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=99.97 E-value=7e-30 Score=261.17 Aligned_cols=286 Identities=21% Similarity=0.242 Sum_probs=216.2
Q ss_pred chHHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHH-hCCCCccccC
Q psy14128 67 HPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNK-LGSEDLYTEY 145 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~-lGt~nid~~~ 145 (393)
++...+.+|+++||+|.|++|++.+|++|++.++++|.+.. ++++++.|++.++|+.|++++|++. +|++|+++..
T Consensus 46 ~~~~~~~~Rl~~Pl~R~~g~~~~isWdeAl~~ia~~l~~~~---~~~~~~~s~~~~~e~~~~~~~~~~~~~gs~~~~~~~ 122 (472)
T cd02771 46 YGYVNSRDRLTQPLIRRGGTLVPVSWNEALDVAAARLKEAK---DKVGGIGSPRASNESNYALQKLVGAVLGTNNVDHRA 122 (472)
T ss_pred cccccCCcccCCCceecCCceeEecHHHHHHHHHHHHHHhh---hhEEEEecCCCChHHHHHHHHHHHHhcCCChhhcch
Confidence 45667889999999999999999999999999999998653 4688899999999999999999986 9999988654
Q ss_pred CCCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcC-------------------------
Q psy14128 146 AFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTN------------------------- 200 (393)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~------------------------- 200 (393)
..+.. ..+......+.++.|+++||+||+||+|+.+++|.+..+++++.+++
T Consensus 123 ~~~~~---~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~~~~v~~~~~~~~a~~a~~~~~~~p 199 (472)
T cd02771 123 RRLIA---EILRNGPIYIPSLRDIESADAVLVLGEDLTQTAPRIALALRQAARRKAVELAALSGIPKWQDAAVRNIAQGA 199 (472)
T ss_pred hhhhh---hhhcccCCCCCCHHHHHhCCEEEEEeCCccccchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcccCC
Confidence 32221 11111223456789999999999999999999999999999987666
Q ss_pred CceEEEEcCCCCcccc--c----cccCCCHHHHHHHH----------------ccHHHHHHHHHhCCCCEEEEcCccccc
Q psy14128 201 ELDVAYIGPKVDLRYD--Y----EHLGESADLIKQLA----------------SGSHAFSKKLAAAKKPLIVVGADMLSR 258 (393)
Q Consensus 201 gakiivi~p~~~~~~~--~----~~lg~~~~~l~~l~----------------~g~~~~a~~l~~a~~~~ii~G~~~~~~ 258 (393)
|++++++||+.+.+.. . .+.+++......+. +.+.++|+.|+++++++|++|.++
T Consensus 200 g~~~~~i~~~~~~~~~~ad~~~~~~pg~~~al~~~l~~~~~~~~~~~~gv~~~~~i~~lA~~l~~a~~~~i~~g~g~--- 276 (472)
T cd02771 200 KSPLFIVNALATRLDDIAAESIRASPGGQARLGAALARAVDASAAGVSGLAPKEKAARIAARLTGAKKPLIVSGTLS--- 276 (472)
T ss_pred CCceEEeechhhhhhhhhhhhhhhCcCCHHHHHHHHHhhChhhhhhccCCChHHHHHHHHHHHhcCCCcEEEECCCc---
Confidence 5666666664332211 1 22334433332221 124578999999999999999987
Q ss_pred cCHHHHHHHHHHHHHHhCC-----CcccCCCccccccccccC------CCcHHHHh----hcccCcEEEEcCCCC-CCCC
Q psy14128 259 SDGAAVLALVQQLAAKVTC-----ESDHLGESADLIKQLASG------SHAFSKKL----AAAKKPLIVVGADML-SRSD 322 (393)
Q Consensus 259 ~~~~~~~~~~~~l~~~tg~-----~~~~~~~~~n~~G~~~~g------g~~~~~~~----~~~~~al~v~g~np~-~~p~ 322 (393)
++.....++.+|...+|. ++..+...+|++|...++ |.+..+++ .+.+|++|++|.||. +.|+
T Consensus 277 -~~~~~~~al~~L~~~~G~~g~g~g~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~~i~~g~ik~l~~~g~np~~~~p~ 355 (472)
T cd02771 277 -GSLELIKAAANLAKALKRRGENAGLTLAVEEGNSPGLLLLGGHVTEPGLDLDGALAALEDGSADALIVLGNDLYRSAPE 355 (472)
T ss_pred -CcHHHHHHHHHHHHHhcCCCCCcceeeccccccchhhhhcCCCCCCCCCCHHHHHHHHhcCCceEEEEeccCcccCCCh
Confidence 456788999999998873 234444556887876654 34445544 457899999999998 7887
Q ss_pred hhhHH-------------------------------------------HHhhhhhhcc-CCCCCCCcchHHHHHHHHHHH
Q psy14128 323 GAAVL-------------------------------------------ALVQQLAAKV-TCESDVPCDWKVLNILQKAAS 358 (393)
Q Consensus 323 ~~~v~-------------------------------------------~~vq~~~~av-~~~g~~~~dw~i~~~l~~~a~ 358 (393)
... + +++|.+.+++ +|+|++|+||+| |.++++
T Consensus 356 ~~~-~~al~~~~~~V~~d~~~t~ta~~ADvvLP~~~~~E~~g~~~~~~~~~~~~~~~i~~p~ge~k~d~~I---~~~La~ 431 (472)
T cd02771 356 RRV-EAALDAAEFVVVLDHFLTETAERADVVLPAASFAEKSGTFVNYEGRAQRFFKAYDDPAGDARSDWRW---LHALAA 431 (472)
T ss_pred HHH-HHHHhcCCeEEEEecCCChhHHhCCEEeccCcccccCCcEEccCCeEEEeeecccCCCccCchHHHH---HHHHHH
Confidence 533 2 8899999999 999999999999 677778
Q ss_pred hccccCCCC
Q psy14128 359 QVAALDIGY 367 (393)
Q Consensus 359 ~~g~~d~g~ 367 (393)
++|. +..|
T Consensus 432 rlg~-~~~~ 439 (472)
T cd02771 432 KLGG-KLVP 439 (472)
T ss_pred HhCC-CCCC
Confidence 8884 4555
No 28
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=99.97 E-value=9.3e-30 Score=276.39 Aligned_cols=286 Identities=20% Similarity=0.239 Sum_probs=212.4
Q ss_pred chHHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCC
Q psy14128 67 HPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYA 146 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~ 146 (393)
+++.++.+|+++||+|.+++|.+.+|++|+..++++|.+.. +..+++|++.++|+.|+++|| +|++|++....
T Consensus 270 ~~~~~~~dRl~~Pl~R~~g~~~~isWdeAl~~ia~~l~~~~----~~~G~~s~~~t~e~~~~l~k~---~gs~~~~~~~~ 342 (847)
T PRK08166 270 YGYVNLKDRPRQPLQRRGDDFITLNADQALQGAADILRQAK----KVIGIGSPRASLESNFALREL---VGAENFYTGIA 342 (847)
T ss_pred hhhccccccCCcceeecCCceeEeCHHHHHHHHHHHHHhhc----ceEEEECCCcchHHHHHHHHH---hCCCCcccccC
Confidence 56777889999999999999999999999999999997642 223378899999999999888 79999875432
Q ss_pred ----CCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCC----------
Q psy14128 147 ----FPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVD---------- 212 (393)
Q Consensus 147 ----~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~---------- 212 (393)
.|+......+......+.++.|+++||+||+||+|+.+++|+++.++|++. ++|+|++++||+..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Ilv~G~N~~~~~p~~~~~i~~a~-~~gaklividpr~~~~~~~~~~~~ 421 (847)
T PRK08166 343 AGEQERLQLALKVLREGGIYTPSLREIESYDAVLVLGEDLTQTAARVALAVRQAV-KGKAREMAAAQKVADWQIAAVRNI 421 (847)
T ss_pred hHHhhhhhHHHHHhhcCCCCCCCHHHHHhCCEEEEEeCChHHhhHHHHHHHHHHH-HcCCceEeeccccccchhhhhhhc
Confidence 121110111111112455788999999999999999999999999999998 58999999999621
Q ss_pred ----------------ccc--cccccC----CCHHHHHHHH------------------ccHHHHHHHHHhCCCCEEEEc
Q psy14128 213 ----------------LRY--DYEHLG----ESADLIKQLA------------------SGSHAFSKKLAAAKKPLIVVG 252 (393)
Q Consensus 213 ----------------~~~--~~~~lg----~~~~~l~~l~------------------~g~~~~a~~l~~a~~~~ii~G 252 (393)
.+. ...|+. ++..++..|+ +.++++|+.|+++++++|++|
T Consensus 422 g~~~~~~l~vv~~~~t~~a~~Ad~~l~~~pg~~~~l~~al~~~~~~~~~~~~~~~~~~~~~i~~~A~~la~a~~~~I~~G 501 (847)
T PRK08166 422 GQRAKSPLFITNVDETRLDDIAAWTYRAPPEDQARLGFAIAHALDNSAPAVDGLDPELQAKADVIAQALAGAKKPLIISG 501 (847)
T ss_pred ccccCcceEEecCchhhHHHHHhhhhcCCchhHHHHHHHHHhhhhhhcchhccCccchhHHHHHHHHHHhcCCCcEEEEe
Confidence 000 113332 2332322221 136789999999999999999
Q ss_pred CccccccCHHHHHHHHHHHHHHhC---C--CcccCCCccccccccccCCCcHHHHh----hcccCcEEEEcCCCCCCCCh
Q psy14128 253 ADMLSRSDGAAVLALVQQLAAKVT---C--ESDHLGESADLIKQLASGSHAFSKKL----AAAKKPLIVVGADMLSRSDG 323 (393)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~tg---~--~~~~~~~~~n~~G~~~~gg~~~~~~~----~~~~~al~v~g~np~~~p~~ 323 (393)
.++..+ .....+.+|+..++ . ++..+.+++|++|+..+++..+.+++ ++.+|++|++|+||.+.|+.
T Consensus 502 ~g~~~~----~~~~~~~~l~~~l~~~g~~gG~~~l~~~~n~~G~~~~g~~~~~~l~~~i~~g~ikal~v~g~np~~~~~~ 577 (847)
T PRK08166 502 TSAGSP----AIIEAAANVAKALKGRGADVGITLVAPEANSMGLALLGGGSLEEALEELESGRADAVIVLENDLYRHAPA 577 (847)
T ss_pred CcccCh----HHHHHHHHHHHHHhccCCCceEEEeccchhHHHHHHhcCCCHHHHHHHHHcCCCCEEEEeCCCcccCcCH
Confidence 988632 34566666666652 2 35566778899999999887776766 35789999999999877776
Q ss_pred hhHH-------------------------------------------HHhhhhhhccCCCC-----CCCcchHHHHHHHH
Q psy14128 324 AAVL-------------------------------------------ALVQQLAAKVTCES-----DVPCDWKVLNILQK 355 (393)
Q Consensus 324 ~~v~-------------------------------------------~~vq~~~~av~~~g-----~~~~dw~i~~~l~~ 355 (393)
..++ +|+|+++++++||| ++||||+| |..
T Consensus 578 ~~~~~aL~~~dflVv~d~f~teTA~~ADvVLPaa~~~E~~Gt~~n~egr~q~~~~~v~p~g~~~~~e~r~dw~I---~~~ 654 (847)
T PRK08166 578 ARVDAALAKAPLVIVLDHQRTATMEKAHLVLPAASFAESDGTLVNNEGRAQRFFQVYDPAYYDSKTVMLESWRW---LHS 654 (847)
T ss_pred HHHHHHHhcCCEEEEEccccCCccccCCEEeccCcccccCceEECcCCcceeecceecCCCccccccccCCHHH---HHH
Confidence 5544 99999999999999 99999999 566
Q ss_pred HHHhccccCCCC
Q psy14128 356 AASQVAALDIGY 367 (393)
Q Consensus 356 ~a~~~g~~d~g~ 367 (393)
+|+++|.-++.+
T Consensus 655 La~~lg~~~~~~ 666 (847)
T PRK08166 655 LHSTLLSREVDW 666 (847)
T ss_pred HHHHhCCCCCCC
Confidence 777787433444
No 29
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=99.96 E-value=3.7e-29 Score=258.76 Aligned_cols=290 Identities=14% Similarity=0.081 Sum_probs=215.6
Q ss_pred hHHhhhhhcCCCEEEe-CCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHH-hCCCCccccC
Q psy14128 68 PFSKKLSAAKKPLIVV-GADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNK-LGSEDLYTEY 145 (393)
Q Consensus 68 ~~~~~l~r~~~PlI~~-g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~-lGt~nid~~~ 145 (393)
+...+.+|+++||+|. +++|++++|++|++.++++|.+... +++++++.|+..++|+.|++++|++. +|++|+++..
T Consensus 92 ~~~y~pdRl~~Pl~R~g~g~~~~iSWdeAld~ia~~l~~i~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 170 (524)
T cd02764 92 LSLYDPDRAQGPLRRGIDGAYVASDWADFDAKVAEQLKAVKD-GGKLAVLSGNVNSPTTEALIGDFLKKYPGAKHVVYDP 170 (524)
T ss_pred HhhcChHhhhhhHhcCCCCCeeeCCHHHHHHHHHHHHHHhhc-CCcEEEEeCCCCCchHHHHHHHHHHhCCCCceeeECC
Confidence 5667889999999998 5799999999999999999987654 67898898888888989999999997 8899987754
Q ss_pred CCCccchhhhhhhcccC-CCCccCccccCEEEEecCCcCccc--cHHHHHHHHhhhcCC-----ceEEEEcCCCCcccc-
Q psy14128 146 AFPLEGAGTDLRANYLL-NNKIAGAEEADLILLIGTNPRFEA--PLFNARIRKGYLTNE-----LDVAYIGPKVDLRYD- 216 (393)
Q Consensus 146 ~~~~~~~~~~~~~~~~~-~~~~~~ie~AD~IL~iG~n~~~~~--p~l~~rlr~a~~~~g-----akiivi~p~~~~~~~- 216 (393)
. |...........++. ..+..|+++||+||+||+|+.+++ |+...+...+.+++| .||++|||+.+.+..
T Consensus 171 ~-~~~~~~~~~~~~~G~~~~~~~D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~ 249 (524)
T cd02764 171 L-SAEDVNEAWQASFGKDVVPGYDFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGAN 249 (524)
T ss_pred C-ChHHHHHHHHHHcCCCCCCCcChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhh
Confidence 2 221112222222322 235789999999999999999996 444555543333444 499999998777743
Q ss_pred -ccc----cCCCHHHHHHHH-----c-------------------------------cHHHHHHHHHhCCCCEEEEcCcc
Q psy14128 217 -YEH----LGESADLIKQLA-----S-------------------------------GSHAFSKKLAAAKKPLIVVGADM 255 (393)
Q Consensus 217 -~~~----lg~~~~~l~~l~-----~-------------------------------g~~~~a~~l~~a~~~~ii~G~~~ 255 (393)
..| +|+|.+++..++ + .++++|+.|+++++++|++|.++
T Consensus 250 Ad~~l~irPGtD~al~lam~~~ii~~~~~d~d~~f~~~~~~~~tpe~aa~itgv~~~~I~~lA~~~a~~~~~~i~~G~g~ 329 (524)
T cd02764 250 ADVRLAIRPSQEKAFALGLAHKLIKKGAGSSLPDFFRALNLAFKPAKVAELTVDLDKALAALAKALAAAGKSLVVAGSEL 329 (524)
T ss_pred hcceeccCcccHHHHHHHHHHHHhhccccccchhhhhhhhcccCcccccccccchHHHHHHHHHHHHhcCCcEEEECCCC
Confidence 334 467766554332 1 15789999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHHhCCCcccCCCccc-cccccccCCCcHHHHh----hcccCcEEEEcCCCC-CCCChhhHH--
Q psy14128 256 LSRSDGAAVLALVQQLAAKVTCESDHLGESAD-LIKQLASGSHAFSKKL----AAAKKPLIVVGADML-SRSDGAAVL-- 327 (393)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n-~~G~~~~gg~~~~~~~----~~~~~al~v~g~np~-~~p~~~~v~-- 327 (393)
.++. +.....++..|+..|| +++......+ ..+.....+.+..+++ ++.+|++|++|.||+ ++||.+.++
T Consensus 330 ~~~~-g~~~~~ai~~L~altG-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~i~~g~ik~l~v~~~Np~~~~p~~~~~~~a 407 (524)
T cd02764 330 SQTA-GADTQVAVNALNSLLG-NDGKTVDHARPIKGGELGNQQDLKALASRINAGKVSALLVYDVNPVYDLPQGLGFAKA 407 (524)
T ss_pred Cccc-cHHHHHHHHHHHHHhC-CCCccccCCCCcccccccchHHHHHHHHHHHcCCccEEEEeCCCccccCCCcHHHHHH
Confidence 9877 8889999999999999 5665443322 1221112233444444 456899999999999 999987765
Q ss_pred -----------------------------------------HHhhhhhhccCCCCCCCcc-hHHHHHHHHHHHhccccC
Q psy14128 328 -----------------------------------------ALVQQLAAKVTCESDVPCD-WKVLNILQKAASQVAALD 364 (393)
Q Consensus 328 -----------------------------------------~~vq~~~~av~~~g~~~~d-w~i~~~l~~~a~~~g~~d 364 (393)
+++|..+++++|+|++|+| |+| +..+|+++|..+
T Consensus 408 l~k~df~Vv~d~~~teTa~~ADvVLPaat~~E~~g~~~~~~~~~~~~~~~i~P~gear~d~~~i---~~~La~~lg~~~ 483 (524)
T cd02764 408 LEKVPLSVSFGDRLDETAMLCDWVAPMSHGLESWGDAETPDGTYSICQPVIAPLFDTRSAQESL---LLALGGSLGGYE 483 (524)
T ss_pred HhcCCeEEEecCCCChhHHhcCEeccCCCccccccCccccCceEEEeccccccccCCCCcHHHH---HHHhccCCCHHH
Confidence 7899999999999999999 899 566677777533
No 30
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export.
Probab=99.96 E-value=9.9e-29 Score=265.70 Aligned_cols=285 Identities=17% Similarity=0.125 Sum_probs=213.8
Q ss_pred hhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHh--ccCCCceEEE----cCcccHHHHHHHHHHHHHH-hCCCCccccC
Q psy14128 73 LSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAK--VTCESDVAGV----VGSLADAEAMVALKDLLNK-LGSEDLYTEY 145 (393)
Q Consensus 73 l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l----~g~~~t~E~~~~~~k~~~~-lGt~nid~~~ 145 (393)
.+|+++||+|.|++|++++|++||+.+|+++++. ++|+++++++ .|+..++|+.|..+|++.. +||+|++++.
T Consensus 113 ~~RL~~Pl~R~~g~~~~iSWdeAld~iA~~l~~i~~~~G~~sv~~~~~~~~g~~~~~e~~~~~~k~~~~~lgt~n~~~~~ 192 (806)
T TIGR02693 113 QDRLTYPLLRVGDQFQATSWDDALTLMALLTKKIRDRDGNDDIAVKCFDHGGAGGGFENTWGAGKLFFAALSVKHIRIHN 192 (806)
T ss_pred CccccCCeEecCCcEEEccHHHHHHHHHHHHHHHHhhcCCccEEEEecccCCCCCchHHHHHHHHHHHHHcCCCcccccc
Confidence 3899999999999999999999999999999764 5899999986 4677789999999988875 9999998765
Q ss_pred CCCccchhhhhh--hcccCCCCccCccccCEEEEecCCcCccccHHH--HHH---H---Hhhhc--------CCceEEEE
Q psy14128 146 AFPLEGAGTDLR--ANYLLNNKIAGAEEADLILLIGTNPRFEAPLFN--ARI---R---KGYLT--------NELDVAYI 207 (393)
Q Consensus 146 ~~~~~~~~~~~~--~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~--~rl---r---~a~~~--------~gakiivi 207 (393)
+.|+.....+.+ ....++.+++|+++||+||+||+|+.+++|.+. ..+ + ++.++ +++|||||
T Consensus 193 r~~~~s~~~~~~~~G~g~~~~~~~D~~~Ad~iv~~G~Np~et~~~~~~~~~~~~~~~~~~ak~~~~~~g~~~~~~kiIvI 272 (806)
T TIGR02693 193 RPAYNSEVHGTREMGVGELNNTYEDARLADTIVLWGANSYETQTNYFLNHWLPNLQGATVAKKKQAFPGEPAEPGYLIVV 272 (806)
T ss_pred cccccccchhhhhhcCCCCCCCHHHHHhCCEEEEECCChHHhhhhhhHhhhhhhhhHHHHhhhhhcccccccCCceEEEE
Confidence 444321111111 112345678999999999999999999998643 111 1 22211 25799999
Q ss_pred cCCCCcccc---------ccc----cCCCHHHHHHHHc------------------------------------------
Q psy14128 208 GPKVDLRYD---------YEH----LGESADLIKQLAS------------------------------------------ 232 (393)
Q Consensus 208 ~p~~~~~~~---------~~~----lg~~~~~l~~l~~------------------------------------------ 232 (393)
||+.+.++. ..| +|+|.+++.+|+.
T Consensus 273 DPr~t~ta~~ad~~a~d~~~~l~i~PGTD~aL~~a~~~~Ii~~g~~D~~Fi~~~~~t~gfd~~~~~~~~t~e~aa~itGV 352 (806)
T TIGR02693 273 DPRRTSSYTVAEQTAPDRVLHLRINLGTDYALFNALATYVWEKGWYDMAFIQARTHMTLFEDAVKSLKMSMAQAERITGV 352 (806)
T ss_pred cCCCCchhhhhcccccccceEeccCCCcHHHHHHHHHHHHHHCCCcCHHHHhcccCCCCHHHHHHHccCCHHHHHHHHCc
Confidence 998776632 133 4777776544420
Q ss_pred ---cHHHHHHHHHhCC------CCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccccccccC--------
Q psy14128 233 ---GSHAFSKKLAAAK------KPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASG-------- 295 (393)
Q Consensus 233 ---g~~~~a~~l~~a~------~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G~~~~g-------- 295 (393)
.++++|+.+++++ +++|++|.|+.++.++.....++.+|+..|| +++.++.+...+|....+
T Consensus 353 ~~~~I~~~A~~~a~~k~~~~~~~~~~~~~~G~~~~~~~~~~~~ai~~L~~ltG-niG~pGgG~~~~~~~~~g~~~~~~~~ 431 (806)
T TIGR02693 353 SRAEIEKAAEWIAKPKAGGKKRRTMTIYEKGIIWGNDNYDQVAALVQLAVATH-NIGRPGTGCVRQGGHQEGYVRPPAIH 431 (806)
T ss_pred CHHHHHHHHHHHHhcccccCccceEEEecchheeccccHHHHHHHHHHHHHhC-CCCCCCCcccccCCccCCCcCCcccC
Confidence 1577899998876 7899999999999899999999999999999 799988887766543221
Q ss_pred -C---CcHHHHh-hcccCcEEEEcCCCC-CCCChhhH-----------------------------------------H-
Q psy14128 296 -S---HAFSKKL-AAAKKPLIVVGADML-SRSDGAAV-----------------------------------------L- 327 (393)
Q Consensus 296 -g---~~~~~~~-~~~~~al~v~g~np~-~~p~~~~v-----------------------------------------~- 327 (393)
+ ..+.+++ ++.+|++|++|.||+ +.||...+ +
T Consensus 432 ~~~~~~~~~~~i~~g~~k~l~v~g~Np~~s~pn~~~~~~~~~~~~~~v~~al~~~~~~~~~~~~~~~~~a~~~~~~f~V~ 511 (806)
T TIGR02693 432 RGGPPVYVDQFLIEGKGKFYWVWGCDPYLTTPNAQVFRKVIHERTEKVKDAMSAAGEGTIQEMVQKILDALYQGGLFLVV 511 (806)
T ss_pred CCCCHHHHHHHHhCCCceEEEEEecChhccCcChHHHHHHHhhhhHHHHHHHHhcccccchhhhhhhhhhhccCCCEEEE
Confidence 1 1233333 456899999999998 88886511 1
Q ss_pred --------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhcc
Q psy14128 328 --------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVA 361 (393)
Q Consensus 328 --------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g 361 (393)
+++|..+++++|||++|+||+|+ .++|+++|
T Consensus 512 ~D~~~t~ta~~ADvvLPaa~~~E~~~~~~n~~~~i~~~~~~v~p~gear~d~~I~---~~La~rlg 574 (806)
T TIGR02693 512 QDIYPTKTAEAAHLILPAAGWGEMNLTSMNGERRMRLYEKFMDPPGEAKPDCLIA---AWVANTIA 574 (806)
T ss_pred EcCCCCccHhhCcEEEcCCcceeecCcEEcCccceEEeccccCCCccCcCHHHHH---HHHHHHHH
Confidence 68999999999999999999995 55555554
No 31
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=99.96 E-value=2.6e-29 Score=253.69 Aligned_cols=280 Identities=21% Similarity=0.243 Sum_probs=201.8
Q ss_pred hcCCCEEE---e-CCceeeeChHHHHHHHHHHHHH--hccCCCceEE-EcCcccHHHHHHHHHHHHHHhCCCCccccCCC
Q psy14128 75 AAKKPLIV---V-GADMLSRSDGAAVLALVQQLAA--KVTCESDVAG-VVGSLADAEAMVALKDLLNKLGSEDLYTEYAF 147 (393)
Q Consensus 75 r~~~PlI~---~-g~~~~~~~~~~al~~~a~~l~~--~~~g~~sv~~-l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~ 147 (393)
|+++||+| . +++|++++|++|++.++++|.+ .++|++++.+ ..++..++|+.+..++|++.+|++|+......
T Consensus 1 Rl~~Pl~R~g~rg~~~~~~isWdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (432)
T PF00384_consen 1 RLKYPLKRVGERGDGKFVRISWDEALDEIAEKLKEIIDKYGPDSIAFFGSGGGTSNEEWYLLQRFARALGSPNTNNHGSQ 80 (432)
T ss_dssp B--S-EEEHCSTTSSSEEE--HHHHHHHHHHHHHHHHHHCTGGGEEEEEETTTSSHHHHHHHHHHHHHTTHHEEEEEEEG
T ss_pred CCCcceEccccCCCCCEEEccHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999 6 5789999999999999999976 4689999985 55666779999999999999998765543322
Q ss_pred Cccchhh---hhh----hcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcc--cccc
Q psy14128 148 PLEGAGT---DLR----ANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLR--YDYE 218 (393)
Q Consensus 148 ~~~~~~~---~~~----~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~--~~~~ 218 (393)
|...... .+. ....++.++.|+++||+||+||+|+.+++|.++.+.+++.+++|+|+++|||+.+.+ ....
T Consensus 81 ~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~ 160 (432)
T PF00384_consen 81 CDTCMASAAEAFGGDFVGGPAFGNPLEDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADE 160 (432)
T ss_dssp GGCTTHHHHHHHSSHSHTSSSCCSHHHGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSE
T ss_pred cccccchhhhheecccccCcccccccceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhccc
Confidence 2211111 111 112345567899999999999999999999998888887777899999999987755 3334
Q ss_pred c----cCCCHHHHHHHHc--------------------------------------------cHHHHHHHHHhCCC-CEE
Q psy14128 219 H----LGESADLIKQLAS--------------------------------------------GSHAFSKKLAAAKK-PLI 249 (393)
Q Consensus 219 ~----lg~~~~~l~~l~~--------------------------------------------g~~~~a~~l~~a~~-~~i 249 (393)
| +|+|.++...++. -+.++|+.+.++++ +++
T Consensus 161 ~i~i~PGtD~al~~a~~~~ii~~~~~d~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~~A~~~~~~~~~~~~ 240 (432)
T PF00384_consen 161 WIPIRPGTDAALALAMAHVIIDEGLYDKEFIEKYTYGFDYTNAPLLVYTDEDAAEICGVPAEKIRELAREYAKAAPKAAI 240 (432)
T ss_dssp EEEE-TTTHHHHHHHHHHHHHHTTTSTHHHHHHHEECHHHHHHHHTTTTTHHHHHHHTSHHHHHHHHHHHHHHSTS-EEE
T ss_pred cccccccccHHhhcccccceeeccccccchhhhhhhhhhhhhhhhhcccccccceEEEechhhcccccccccccccccch
Confidence 4 5777776433321 04667888888765 899
Q ss_pred EEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccccc--------cccC--------------------------
Q psy14128 250 VVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQ--------LASG-------------------------- 295 (393)
Q Consensus 250 i~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G~--------~~~g-------------------------- 295 (393)
++|.++.++.++.....++..|..++| .++.++++.+..+. ...+
T Consensus 241 ~~g~g~~~~~~g~~~~~a~~~L~~l~G-~i~~~Ggg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (432)
T PF00384_consen 241 IWGWGITRHSNGEQTARAIANLAALTG-NIGKPGGGIFPLGGPPNVPGYANPVGPLPVDPPADGFPYGKPKFWKEGPGNL 319 (432)
T ss_dssp EESHHHHSSTTHHHHHHHHHHHHHHHT-TTTSTTBEEEEESSSTTHTTTHHHTTSSTTEECTTEETCHHHHHHCGHTTHS
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhc-ceeecccccccccccccccccccccccccccccccchhhhhhhhhccCcccc
Confidence 999999999999999999999999999 67776665443321 0000
Q ss_pred ----CCcHHHHh----hcccCcEEEEcCCCC-CCCChhhHH---------------------------------------
Q psy14128 296 ----SHAFSKKL----AAAKKPLIVVGADML-SRSDGAAVL--------------------------------------- 327 (393)
Q Consensus 296 ----g~~~~~~~----~~~~~al~v~g~np~-~~p~~~~v~--------------------------------------- 327 (393)
+....++. ...++++|+++.||. +.|+...+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~~~~~~~~~al~k~~~~V~~d~~~teta~~ADiiLP~~~~~E~~~~~ 399 (432)
T PF00384_consen 320 KFPPGNDFVEAINAIEDGKIKALFVLGGNPAQSFPDSNKVIEALKKLDFVVVIDPFMTETAKYADIILPAATWLEREDTV 399 (432)
T ss_dssp CSSSTTEHHHHHHHHHTTSSSEEEEESCSHHHHSSSHHHHHHHHTTTSEEEEEESSCTHHHHTSSEEEEBE-GGGSEEEE
T ss_pred chhhhhhhhhhhhhccccceeeeeccccceeeecccchhhhhhcccccceecccccchhhcchhheecccCCccccCCcc
Confidence 12222222 346799999999998 899987764
Q ss_pred ----HHhhhhhhccCCCCCCCcchHHHHHHHH
Q psy14128 328 ----ALVQQLAAKVTCESDVPCDWKVLNILQK 355 (393)
Q Consensus 328 ----~~vq~~~~av~~~g~~~~dw~i~~~l~~ 355 (393)
+++|..+++++|||++|+||+|+..|++
T Consensus 400 ~~~~~~~~~~~~~v~p~ge~~~d~~I~~~la~ 431 (432)
T PF00384_consen 400 VNAEGRVQRRNPVVEPPGEARSDWEIFRELAK 431 (432)
T ss_dssp EETTSEEEEEEESSC-STT-BEHHHHHHHHHH
T ss_pred cCCcCchhhcccccCCCccCChHHHHHHHHhc
Confidence 8899999999999999999999766654
No 32
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=99.96 E-value=4.8e-28 Score=264.33 Aligned_cols=293 Identities=16% Similarity=0.109 Sum_probs=220.0
Q ss_pred HHccC--chHHhhhhhcCCCEEEeC----CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEc-CcccHHHHHHHHHHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVG----ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVV-GSLADAEAMVALKDL 132 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g----~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~-g~~~t~E~~~~~~k~ 132 (393)
|.+|. +++..+.+|+++||+|+| ++|++++|+||++.+|++|.+. ++|+++++++. ++..+.|+.+..+||
T Consensus 105 C~KG~~~~~~~y~p~Rl~~Pl~R~g~RG~G~~~~iSWdEAld~IA~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~r~ 184 (912)
T TIGR03479 105 CQKGACYNNYMYGDDRLKYPLKRVGERGEGKWKRISWDEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSRF 184 (912)
T ss_pred CccchhhhhhhcCcccccCceeecCCCCCCceEEeCHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCchhhHHHHHHHHH
Confidence 66664 667889999999999985 7899999999999999999753 68999999874 455666777778899
Q ss_pred HHHhCCCCccccCCCCccchhhhhhhcc---cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 133 LNKLGSEDLYTEYAFPLEGAGTDLRANY---LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 133 ~~~lGt~nid~~~~~~~~~~~~~~~~~~---~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
++.+|+.++++... +.+...+...++ ..+.++.|+++||+||+||+|+.+++|....+++++. ++|+|||+|||
T Consensus 185 ~~~lG~~~~~~~~~--~~~~~~~~~~~~G~~~~~~~~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~-~~GaklVvIdP 261 (912)
T TIGR03479 185 ANLIGGVSPDIFDD--YGDLYTGAFHTFGKAHDSATSDDWFNADYIIMWGSNPSVTRIPDAHFLSEAR-YNGARVVSIAP 261 (912)
T ss_pred HHHcCCCccccccc--cCCCCCcccceeccCccCCchhhhhcCcEEEEecCChHHcCCchHHHHHHHH-hcCCeEEEECC
Confidence 99999988776432 111111222222 2345788999999999999999999999999999886 68999999999
Q ss_pred CCCcccc--ccc----cCCCHHHHHHH-----------------------------------------------------
Q psy14128 210 KVDLRYD--YEH----LGESADLIKQL----------------------------------------------------- 230 (393)
Q Consensus 210 ~~~~~~~--~~~----lg~~~~~l~~l----------------------------------------------------- 230 (393)
+.+.++. +.| +|+|.+++.++
T Consensus 262 r~t~tA~~AD~wlpirPGTD~ALalam~~vIi~e~l~D~~fv~~~T~~p~LV~~d~g~~lr~~d~~~~~~~~~~~v~d~~ 341 (912)
T TIGR03479 262 DYNPSTIHADLWLPVRVGTDAALALGMVQVIIDEKLYDAAFLKEQTDLPLLVRMDTGKFLREADVEAGGSDKVFYIWDSK 341 (912)
T ss_pred CCChhhhhCCeecCCCCCcHHHHHHHHHHHHHHcCcccHHHHHHhCCCceEEEcCCCceeeHHhcCccCCCCceEEEECC
Confidence 8777633 333 45655432111
Q ss_pred --------------------------------------------------Hc-------------------cHHHHHHHH
Q psy14128 231 --------------------------------------------------AS-------------------GSHAFSKKL 241 (393)
Q Consensus 231 --------------------------------------------------~~-------------------g~~~~a~~l 241 (393)
.+ .++++|+.|
T Consensus 342 ~~~~~~~~~~~g~~~~~~~~~~~~p~l~G~~~v~~~~g~~~~~~t~f~~l~~~~~~yTpe~aa~itGVpae~I~~lAr~~ 421 (912)
T TIGR03479 342 TGKAVKAKGSMGSEDKTLKLDDFDPALEGTFEARLKNGNTIQVRTVFEGLRAELADYTPEKAAAITGVPPSVIRELAREF 421 (912)
T ss_pred CCCcccCCCcccccccccccccCCccccCceeEeccCCCeeeeecHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 00 157799999
Q ss_pred HhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccc----------cccc-----------------c
Q psy14128 242 AAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLI----------KQLA-----------------S 294 (393)
Q Consensus 242 ~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~----------G~~~-----------------~ 294 (393)
+++++++|++|.|+.++.++.....++..|+.+|| +++..+++.++. |... .
T Consensus 422 a~~~~~~i~~g~G~~~~~~g~~~~rai~~L~~LtG-niG~~Ggg~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 500 (912)
T TIGR03479 422 AKAKKASIITGFNSAKWYHGDLMERALFLLLALTG-NWGKTGTGDTHYIGQDKNWVLPGVKALAFPTLKAPTRTDEMGVP 500 (912)
T ss_pred HhcCceEEEeccccccccccHHHHHHHHHHHHHhC-CCCCCCCccccccccccccccccccccccccccCCchhhhccCC
Confidence 99999999999999999999999999999999999 677776653321 1000 0
Q ss_pred -----------------CCCc-HHHHhh---------------cccCcEEEEcCCCC-CCCChhhHH-------------
Q psy14128 295 -----------------GSHA-FSKKLA---------------AAKKPLIVVGADML-SRSDGAAVL------------- 327 (393)
Q Consensus 295 -----------------gg~~-~~~~~~---------------~~~~al~v~g~np~-~~p~~~~v~------------- 327 (393)
.+.. +.+++. ..+|++|++|.||+ +.|+...++
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~p~~p~~~~~ik~l~~~~~Np~~~~~~~~~~~~~~l~kldfiV~~ 580 (912)
T TIGR03479 501 TTVWTYYHAGNLKAWTGPGLDETGAYLDESIDKGWMPNYPRDGKDPKVYIVLRGNPFRRAKGAKAVRENLLPKLELIVDI 580 (912)
T ss_pred ccceeeeeccchhhhcCCccccHHHHHHHHHhcCCCccccccCCCCeEEEEeCCCccccCccHHHHHHHHHccCCEEEEe
Confidence 0111 222321 24799999999998 889876544
Q ss_pred --------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhcc
Q psy14128 328 --------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVA 361 (393)
Q Consensus 328 --------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g 361 (393)
+++|...++++|+|++|+||+|+ ..+|.++|
T Consensus 581 D~~mt~Ta~~ADiVLPaat~~E~~d~~~~~~~~~v~~~~~av~P~geak~D~~I~---~~LA~rlg 643 (912)
T TIGR03479 581 NFRMDSTAMYADIVLPAAWHYEKHDLRTTSGHRFINFFDRPVKPMGESKTDWQIF---ALLAKKIQ 643 (912)
T ss_pred ccccCCCcccCCEEccCCCcccccCCEeccCCceeEEeccccCCCCCCccHHHHH---HHHHHHHH
Confidence 67999999999999999999995 55555554
No 33
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=99.96 E-value=2.1e-28 Score=257.47 Aligned_cols=289 Identities=17% Similarity=0.153 Sum_probs=214.3
Q ss_pred chHHhhhhhcCCCEEEe--------------CCceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccH----HHHH
Q psy14128 67 HPFSKKLSAAKKPLIVV--------------GADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLAD----AEAM 126 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~--------------g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t----~E~~ 126 (393)
.+...+.+|+++||+|. +++|++++|++|++.+|++|.+. +||++++..+.++..+ .++.
T Consensus 39 ~~~~y~pdRl~~Pl~R~g~rg~~~~~~~~~g~g~~~~iSWDEAl~~iA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~ 118 (609)
T cd02751 39 RDRVYSPDRIKYPMKRVGWLGNGPGSRELRGEGEFVRISWDEALDLVASELKRIREKYGNEAIFGGSYGWASAGRLHHAQ 118 (609)
T ss_pred hhhccChhhhcCCeeeccccccCCcccccCCCCCEEEecHHHHHHHHHHHHHHHHHHhCcceeecccCCcccccccccch
Confidence 45667889999999997 46899999999999999999764 5899998765443222 4567
Q ss_pred HHHHHHHHHhCCCCccccCCCCccchhhhhhhccc------CCCCccCccc-cCEEEEecCCcCccccHHH--------H
Q psy14128 127 VALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYL------LNNKIAGAEE-ADLILLIGTNPRFEAPLFN--------A 191 (393)
Q Consensus 127 ~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~------~~~~~~~ie~-AD~IL~iG~n~~~~~p~l~--------~ 191 (393)
+.+++|++.+|++ +++...+|+.....+...+++ .+.++.|+++ ||+||+||+|+.+++|+.+ .
T Consensus 119 ~~~~~~~~~~G~~-~~~~~~~c~~~~~~~~~~~~G~~~~~~~~~~~~D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~ 197 (609)
T cd02751 119 SLLHRFLNLIGGY-LGSYGTYSTGAAQVILPHVVGSDEVYEQGTSWDDIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYY 197 (609)
T ss_pred HHHHHHHHhcCCC-cCCCCCccHHHHHhHhhhEEccchhccCCCChhhHHhcCCEEEEECCCHHHhcCCCCCccCcchHH
Confidence 8889999999863 444345565432223332222 2456888885 9999999999999999653 7
Q ss_pred HHHHhhhcCCceEEEEcCCCCcccc---ccc----cCCCHHHHHHHHc--------------------------------
Q psy14128 192 RIRKGYLTNELDVAYIGPKVDLRYD---YEH----LGESADLIKQLAS-------------------------------- 232 (393)
Q Consensus 192 rlr~a~~~~gakiivi~p~~~~~~~---~~~----lg~~~~~l~~l~~-------------------------------- 232 (393)
+++++. ++|+|||||||+.+.+.. ..| +|+|.+++..|+.
T Consensus 198 ~~~~a~-~~GakiivIDPr~s~ta~~~AD~~l~irPGtD~aL~lam~~~ii~~~~~D~~fi~~~t~gfe~~~~~l~g~~d 276 (609)
T cd02751 198 YLKQAK-DAGVRFICIDPRYTDTAAVLAAEWIPIRPGTDVALMLAMAHTLITEDLHDQAFLARYTVGFDEFKDYLLGESD 276 (609)
T ss_pred HHHHHH-HCCCeEEEECCCCCccccccCCEEECCCCCcHHHHHHHHHHHHHHCcchhHHHHHHHccCcHHHHHHhccCCC
Confidence 888876 689999999998776642 344 5777665443310
Q ss_pred ------------------cHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCcc-------c
Q psy14128 233 ------------------GSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESA-------D 287 (393)
Q Consensus 233 ------------------g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~-------n 287 (393)
.++++|+.|++ ++++|++|.++.++.++.....++..|..+|| +++.++.+. |
T Consensus 277 g~~~tpe~aa~itGv~~~~I~~lA~~~a~-~~~~i~~g~g~~~~~ng~~~~rai~~L~~ltG-n~g~~Gg~~~~~~~~~~ 354 (609)
T cd02751 277 GVPKTPEWAAEITGVPAETIRALAREIAS-KRTMIAQGWGLQRAHHGEQPAWMLVTLAAMLG-QIGLPGGGFGFGYGYSN 354 (609)
T ss_pred CccCCHHHHHHHHCcCHHHHHHHHHHHhc-CCcEEeccchHHhHhcccHHHHHHHHHHHHhC-CCCCCCCCcccccccCC
Confidence 15778999988 89999999999999999999999999999999 566655442 4
Q ss_pred cccccccC--------C----------CcHHHHhh---------------cccCcEEEEcCCCC-CCCChhhHH------
Q psy14128 288 LIKQLASG--------S----------HAFSKKLA---------------AAKKPLIVVGADML-SRSDGAAVL------ 327 (393)
Q Consensus 288 ~~G~~~~g--------g----------~~~~~~~~---------------~~~~al~v~g~np~-~~p~~~~v~------ 327 (393)
..|...++ + ..+.+.+. ..+|++|++|.||+ ++||.+.++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ik~l~~~~~Np~~~~p~~~~~~~al~~~ 434 (609)
T cd02751 355 GGGPPRGGAGGPGLPQGKNPVKDSIPVARIADALLNPGKEFTANGKLKTYPDIKMIYWAGGNPLHHHQDLNRLIKALRKD 434 (609)
T ss_pred CCCccccccCcccCCCCCCCcceEeeHhhHHHHHhCCCCeEeecCcccCCCCEEEEEECCCChhhcCcchHHHHHHHhcC
Confidence 33432211 0 11333332 35899999999999 999987755
Q ss_pred ----------------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccc
Q psy14128 328 ----------------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAA 362 (393)
Q Consensus 328 ----------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~ 362 (393)
+++|...++++|+|++|+||+| +.++|+++|.
T Consensus 435 df~Vv~d~~~teTa~~ADvVLP~~~~~E~~~~~~~~~~~~~~~~~~~~~i~P~ge~r~d~~I---~~~La~~lg~ 506 (609)
T cd02751 435 ETIVVHDIFWTASARYADIVLPATTSLERNDIGLTGNYSNRYLIAMKQAVEPLGEARSDYEI---FAELAKRLGV 506 (609)
T ss_pred CEEEEEccCCCCccccCCEEeccCchhhccCccccCCCCCceEEEeccccCCcccccCHHHH---HHHHHHHhCC
Confidence 4588899999999999999999 5777777775
No 34
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=99.96 E-value=4.2e-28 Score=252.89 Aligned_cols=275 Identities=15% Similarity=0.047 Sum_probs=210.5
Q ss_pred HHccC--chHHhhhhhcCCCEEEeC----CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVG----ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLL 133 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g----~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~ 133 (393)
+.+|. .++..+.+|+++||+|.| ++|+++||++|++.++++|.+. +||+++++++.|+....+..|+.++++
T Consensus 40 C~kG~~~~~~~y~pdRl~~Pl~R~g~rG~g~~~~iSWdEAl~~ia~kl~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~ 119 (567)
T cd02765 40 CTRGLSHLQRVYSPDRLKYPMKRVGERGEGKFERITWDEALDTIADKLTEAKREYGGKSILWMSSSGDGAILSYLRLALL 119 (567)
T ss_pred CcccchhhhhhcChhhhcCCeeecCCCCCCcEEEecHHHHHHHHHHHHHHHHHHhCCceEEEEecCCCcccccHHHHHHh
Confidence 55663 677889999999999985 6899999999999999999764 589999999888777777766654554
Q ss_pred HHhCCCCccccCCCCccchhhhhhhcc-----cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEc
Q psy14128 134 NKLGSEDLYTEYAFPLEGAGTDLRANY-----LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIG 208 (393)
Q Consensus 134 ~~lGt~nid~~~~~~~~~~~~~~~~~~-----~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~ 208 (393)
. ++++.++....|... ......++ ..+.+..|+++||+||+||+|+.+++|....+++++. ++|+||++||
T Consensus 120 ~--~~~~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~~~D~~~ad~il~~G~Np~~s~~~~~~~~~~a~-~~GakliviD 195 (567)
T cd02765 120 G--GGLQDALTYGIDTGV-GQGFNRVTGGGFMPPTNEITDWVNAKTIIIWGSNILETQFQDAEFFLDAR-ENGAKIVVID 195 (567)
T ss_pred h--CCCCcccccCccccc-ccCccceeccccccCCCCHhHHhcCcEEEEECCChHHccchhHHHHHHHH-HcCCeEEEEC
Confidence 3 333444333333321 11111111 1245688999999999999999999998778887775 5899999999
Q ss_pred CCCCcccc--c----cccCCCHHHHHHHH---------------------------------------------------
Q psy14128 209 PKVDLRYD--Y----EHLGESADLIKQLA--------------------------------------------------- 231 (393)
Q Consensus 209 p~~~~~~~--~----~~lg~~~~~l~~l~--------------------------------------------------- 231 (393)
|+.+.++. . +.+|+|.+++.+++
T Consensus 196 Pr~s~ta~~Ad~~l~irPGTD~al~~am~~~ii~~~l~D~~Fi~~~t~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~d~ 275 (567)
T cd02765 196 PVYSTTAAKADQWVPIRPGTDPALALGMINYILEHNWYDEAFLKSNTSAPFLVREDNGTLLRQADVTATPAEDGYVVWDT 275 (567)
T ss_pred CCCCcchhhcCEEeccCCCchHHHHHHHHHHHHhcCcccHHHHHhcCCCceEEEccCCcEeehhhccccCccCceEEEEC
Confidence 98777743 2 33467766543221
Q ss_pred -------------------------------------------------------ccHHHHHHHHHhCCCCEEEEcCccc
Q psy14128 232 -------------------------------------------------------SGSHAFSKKLAAAKKPLIVVGADML 256 (393)
Q Consensus 232 -------------------------------------------------------~g~~~~a~~l~~a~~~~ii~G~~~~ 256 (393)
+.++++|+.|+++++++|++|.++.
T Consensus 276 ~~~~~~~~~~~~~~~~l~g~~~~~g~~~~~~f~~~~~~~~~~tpe~aa~itGV~~~~I~~lA~~~a~~~~~~i~~g~g~~ 355 (567)
T cd02765 276 NSDSPEPVAATNINPALEGEYTINGVKVHTVLTALREQAASYPPKAAAEICGLEEAIIETLAEWYATGKPSGIWGFGGVD 355 (567)
T ss_pred CCCCcccCCCCCCCcceeeeEEECCEEEeEHHHHHHHHhhcCCHHHHHHHHCcCHHHHHHHHHHHhhCCCeEEecccchh
Confidence 0157789999999989999999999
Q ss_pred cccCHHHHHHHHHHHHHHhCCCcccCCCccccccccccCCCcHHHHhhcccCcEEEEcCCCC-CCCChhhHH--------
Q psy14128 257 SRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADML-SRSDGAAVL-------- 327 (393)
Q Consensus 257 ~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G~~~~gg~~~~~~~~~~~~al~v~g~np~-~~p~~~~v~-------- 327 (393)
++.+|.....++..|..+|| +++.++.+.. .+|++|++|.||+ +.|+...++
T Consensus 356 ~~~~g~~~~ra~~~L~~ltG-~ig~~Ggg~~------------------~ik~l~~~~~Np~~~~p~~~~~~~al~kldf 416 (567)
T cd02765 356 RYYHSHVFGRTAAILAALTG-NIGRVGGGVG------------------QIKFMYFMGSNFLGNQPDRDRWLKVMKNLDF 416 (567)
T ss_pred hhhhchHHHHHHHHHHHHhC-cCCCCCCCcc------------------ceeEEEEecCchhhccchHHHHHHHHhcCCE
Confidence 99999999999999999999 6888766432 1789999999998 888865544
Q ss_pred -------------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccc
Q psy14128 328 -------------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAA 362 (393)
Q Consensus 328 -------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~ 362 (393)
+++|..+++++|||++|+||+| +.++|.++|.
T Consensus 417 ~V~~d~~~teTa~~ADvvLP~~~~~E~~~~~~~~~~~~~~~~~~~~i~p~gear~d~~I---~~~La~~lG~ 485 (567)
T cd02765 417 IVVVDIFHTPTVRYADIVLPAAHWFEVEDLLVRYTTHPHVLLQQKAIEPLFESKSDFEI---EKGLAERLGL 485 (567)
T ss_pred EEEEecccCcchhhccEEecCCcccccccccccccCCceEEEeccccCCCCCCccHHHH---HHHHHHHhCC
Confidence 5789999999999999999999 6777777775
No 35
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=99.96 E-value=6.8e-28 Score=238.91 Aligned_cols=285 Identities=24% Similarity=0.275 Sum_probs=207.8
Q ss_pred chHHhhhhhcCCCEEEeCC--ceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCcc
Q psy14128 67 HPFSKKLSAAKKPLIVVGA--DMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLY 142 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g~--~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid 142 (393)
.+...+.+|+++||+|.|+ +|++++|++|+..++++|.+. ++|+++++++.|+..++|+.|.+++|+..+|+++++
T Consensus 46 ~~~~~~~~Rl~~Pl~r~~~~~~~~~isWdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 125 (374)
T cd00368 46 LDGLYSPDRLKYPLIRVGGRGKFVPISWDEALDEIAEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVD 125 (374)
T ss_pred ccccCCcccccCCeEecCCCCCeEEecHHHHHHHHHHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHHhcCCCccC
Confidence 3455568999999999988 999999999999999999754 489999999999999999999999999999999999
Q ss_pred ccCCCCccchhhhhh--hcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcccc--cc
Q psy14128 143 TEYAFPLEGAGTDLR--ANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYD--YE 218 (393)
Q Consensus 143 ~~~~~~~~~~~~~~~--~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~--~~ 218 (393)
+....|......... .....+.++.|+++||+||+||+|+.+++|.+..+++++. ++|+||++|||+.+.+.. ..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~-~~g~kvv~idp~~s~t~~~ad~ 204 (374)
T cd00368 126 SHARLCHASAVAALKAFGGGAPTNTLADIENADLILLWGSNPAETHPVLAARLRRAK-KRGAKLIVIDPRRTETAAKADE 204 (374)
T ss_pred CCCcccHHHHHHHHHHhCCCCCCCCHHHHhhCCEEEEEcCChHHhChHHHHHHHHHH-HCCCeEEEEcCCCCcchHhhCE
Confidence 877666543222222 1223456789999999999999999999999999999997 589999999998776632 34
Q ss_pred cc----CCCHHHHHH-----HH----ccHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCc
Q psy14128 219 HL----GESADLIKQ-----LA----SGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGES 285 (393)
Q Consensus 219 ~l----g~~~~~l~~-----l~----~g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~ 285 (393)
|+ +++..++.. +. +-++++++.+++++++++++|.++.++.++.....++..|...+| .++..+.+
T Consensus 205 ~i~i~pgtd~al~~a~~~~~i~g~~~~~i~~la~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~l~~l~G-~~~~~g~~ 283 (374)
T cd00368 205 WLPIRPGTDAALALAEWAAEITGVPAETIRALAREFAAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTG-NIGRPGGG 283 (374)
T ss_pred eeCCCCCcHHHHHhHHHHHHHHCCCHHHHHHHHHHHHhCCCeEEEeccccceecccHHHHHHHHHHHHHhC-CCCCCCCc
Confidence 43 555554311 11 126778999999999999999999999999999999999999998 45555443
Q ss_pred c----ccccccccCCCcHHHHhhcccCcEEEEcCCCCC--------CCChhhH---------HHHhhhhhhccCCCCCCC
Q psy14128 286 A----DLIKQLASGSHAFSKKLAAAKKPLIVVGADMLS--------RSDGAAV---------LALVQQLAAKVTCESDVP 344 (393)
Q Consensus 286 ~----n~~G~~~~gg~~~~~~~~~~~~al~v~g~np~~--------~p~~~~v---------~~~vq~~~~av~~~g~~~ 344 (393)
. |..-.... +....+.+. ..+-++++..-... +|..... .+++|.++++++|+|++|
T Consensus 284 ~~~~~np~~~~~~-~~~~~~al~-~~~~~V~~d~~~~eta~~ADvvLP~~~~~E~~g~~~~~~~~~~~~~~~v~p~~~~~ 361 (374)
T cd00368 284 LGPGGNPLVSAPD-ANRVRAALK-KLDFVVVIDIFMTETAAYADVVLPAATYLEKEGTYTNTEGRVQLFRQAVEPPGEAR 361 (374)
T ss_pred CCCCCChhhcCCC-HHHHHHHHh-CCCeEEEEecCCCcchhhCcEEecCCcccccCCCccCCCceEEEecCCcCCCCCCc
Confidence 2 21111000 011111111 12223333322221 1221111 189999999999999999
Q ss_pred cchHHHHHHHH
Q psy14128 345 CDWKVLNILQK 355 (393)
Q Consensus 345 ~dw~i~~~l~~ 355 (393)
+||+|+..|++
T Consensus 362 ~~~~i~~~La~ 372 (374)
T cd00368 362 SDWEILRELAK 372 (374)
T ss_pred cHHHHHHHHHh
Confidence 99999655543
No 36
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=99.96 E-value=2.1e-27 Score=255.85 Aligned_cols=293 Identities=15% Similarity=0.138 Sum_probs=212.9
Q ss_pred HHccC--chHHhhhhhcCCCEEEeC----CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVG----ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLL 133 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g----~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~ 133 (393)
|.+|. .++..+.+|+++||+|.| ++|++++|+||++.++++|.+. ++|+++++.+.+.. ++ .+.+++|+
T Consensus 83 C~kG~~~~~~~y~p~Rl~~Pl~R~~~rg~g~~~~iSWdEAl~~ia~~l~~i~~~~G~~~i~~~~~~~--~~-~~~~~~~~ 159 (759)
T PRK15488 83 CARGGSGHSLLYDPQRIVKPLKRVGERGEGKWQEISWDEAYQEIAAKLNAIKQQHGPESVAFSSKSG--SL-SSHLFHLA 159 (759)
T ss_pred CccchhHHHhhcCcchhccceeecCCCCCCCeEEeCHHHHHHHHHHHHHHHHHHhCCceEEeecCCC--cH-HHHHHHHH
Confidence 45553 567888999999999985 6899999999999999999754 58999998654322 22 24568999
Q ss_pred HHhCCCCccccCCCCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHH-HHHhhhcCCceEEEEcCCCC
Q psy14128 134 NKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNAR-IRKGYLTNELDVAYIGPKVD 212 (393)
Q Consensus 134 ~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~r-lr~a~~~~gakiivi~p~~~ 212 (393)
+.+||+|++.....|......+....++ .....|+++||+||+||+|+.+++|+.+.+ ++++.+++|+|||+|||+.+
T Consensus 160 ~~~Gs~n~~~~~~~c~~~~~~~~~~~~G-~~~~~D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s 238 (759)
T PRK15488 160 TAFGSPNTFTHASTCPAGYAIAAKVMFG-GKLKRDLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFS 238 (759)
T ss_pred HHcCCCCCCCccccccchhhhhHHhhcC-CCccCCHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 9999999998877787543333333333 234679999999999999999999976644 77776468999999999877
Q ss_pred cccc--ccc----cCCCHHHHHHHHc---------------------------------------c-----HHHHHHHHH
Q psy14128 213 LRYD--YEH----LGESADLIKQLAS---------------------------------------G-----SHAFSKKLA 242 (393)
Q Consensus 213 ~~~~--~~~----lg~~~~~l~~l~~---------------------------------------g-----~~~~a~~l~ 242 (393)
.++. ..| +|+|..++..|+. | ++++|+.|+
T Consensus 239 ~ta~~Ad~~l~i~PGtD~al~~al~~~ii~~~~~D~~fi~~~t~gf~~~~~~~~~~t~e~~a~~~Gv~~~~I~~lA~~~a 318 (759)
T PRK15488 239 VVASKADEWHAIRPGTDLAVVLALCHVLIEENLYDKAFVERYTSGFEELAASVKEYTPEWAEAISDVPADDIRRIARELA 318 (759)
T ss_pred cchhhCCeeeccCCCcHHHHHHHHHHHHHHcCcccHHHHHHHHhHHHHHHHHHhccCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 7743 333 4777765544321 1 577899998
Q ss_pred hCC-CCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCc--------ccccccc-------ccC-----------
Q psy14128 243 AAK-KPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGES--------ADLIKQL-------ASG----------- 295 (393)
Q Consensus 243 ~a~-~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~--------~n~~G~~-------~~g----------- 295 (393)
+++ .+++.+|++..++.++.....++..|..++| .++..+++ .|.++.. .++
T Consensus 319 ~~~~~~v~~~g~g~~~~~~g~~~~~ai~~L~~l~G-~ig~~Gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (759)
T PRK15488 319 AAAPHAIVDFGHRATFTPEEFDMRRAIFAANVLLG-NIERKGGLYFGKNASVYNKLAGEKVAPTLAKPGVKGMPKPTAKR 397 (759)
T ss_pred hhCCeEEEecCCCceecCccHHHHHHHHHHHHHhC-cCCCCCCcccCCCcccccccCCcccCcccccCccccCCCccccc
Confidence 755 4556679999988888888999999999999 56655532 1111110 000
Q ss_pred --------------CCcHHHHh----hc---ccCcEEEEcCCCC-CCCChhhHH--------------------------
Q psy14128 296 --------------SHAFSKKL----AA---AKKPLIVVGADML-SRSDGAAVL-------------------------- 327 (393)
Q Consensus 296 --------------g~~~~~~~----~~---~~~al~v~g~np~-~~p~~~~v~-------------------------- 327 (393)
+....+++ ++ .+|++|++|.||+ ++||...++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~l~~~g~Np~~~~p~~~~~~~al~k~df~V~~d~~~teTa~~ADvV 477 (759)
T PRK15488 398 IDLVGEQFKYIAAGGGVVQSIIDATLTQKPYQIKGWVMSRHNPMQTVTDRADVVKALKKLDLVVVCDVYLSESAAYADVV 477 (759)
T ss_pred cccccccccCCcccCchHHHHHHHHhcCCCCCceEEEEeCCCccccCCCHHHHHHHHhcCCeEEEEeCCCCcchhhccEE
Confidence 00112222 22 4899999999999 999987755
Q ss_pred --------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccc
Q psy14128 328 --------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAA 362 (393)
Q Consensus 328 --------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~ 362 (393)
++++...++++|||++|+||+| +..+|++||.
T Consensus 478 LPa~t~~E~~g~~~~~~~~~~~~~~~~~~v~P~ge~~~d~~I---~~~La~~lg~ 529 (759)
T PRK15488 478 LPESTYLERDEEISDKSGKNPAYALRQRVVEPIGDTKPSWQI---FKELGEKMGL 529 (759)
T ss_pred ecCCccccccccccccCCCCcceeeeccccCCCccCccHHHH---HHHHHHHhCC
Confidence 2355568999999999999999 5677777774
No 37
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=99.95 E-value=8.1e-27 Score=248.29 Aligned_cols=220 Identities=15% Similarity=0.106 Sum_probs=167.6
Q ss_pred HHccC--chHHhhhhhcCCCEEEeC----CceeeeChHHHHHHHHHHH-----------HHh------------ccCCCc
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVG----ADMLSRSDGAAVLALVQQL-----------AAK------------VTCESD 112 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g----~~~~~~~~~~al~~~a~~l-----------~~~------------~~g~~s 112 (393)
|.+|. .+...+..|+++||+|.| ++|+++||++|++.+|+++ .++ .||+++
T Consensus 68 C~KG~a~~~~~y~p~Rl~~PLkR~G~RGegkw~~ISWdeAl~~IA~~~~~~~~~~~~gl~~i~~~~~~idp~~p~~Gp~s 147 (735)
T cd02758 68 CARGNAGLQYLYDPYRVLQPLKRVGPRGSGKWKPISWEQLIEEVVEGGDLFGEGHVEGLKAIRDLDTPIDPDHPDLGPKA 147 (735)
T ss_pred CccchhhHhhhcCcccccCCeeecCCCCCCceEEecHHHHHHHHHhccccccccchhhHHHHHhhhcccccCccccCcee
Confidence 45554 567888999999999974 6899999999999999983 332 478887
Q ss_pred eEE--EcCcccHHHHHHHHHHHHH-HhCCCCccccCCCCccchhhhhhhcc----cCCCCccCccccCEEEEecCCcCcc
Q psy14128 113 VAG--VVGSLADAEAMVALKDLLN-KLGSEDLYTEYAFPLEGAGTDLRANY----LLNNKIAGAEEADLILLIGTNPRFE 185 (393)
Q Consensus 113 v~~--l~g~~~t~E~~~~~~k~~~-~lGt~nid~~~~~~~~~~~~~~~~~~----~~~~~~~~ie~AD~IL~iG~n~~~~ 185 (393)
+.+ +.+.. . ...|.++||++ .+||+|++....+|..+...+....+ .....+.|+++||+||+||+|+.++
T Consensus 148 ~~~~~~~~~~-~-~~~~~~~rf~~~~~Gs~N~~~~~~~C~~s~~~g~~~~~g~~~~~~~~~~D~~~ad~il~~GsN~a~~ 225 (735)
T cd02758 148 NQLLYTFGRD-E-GRTPFIKRFANQAFGTVNFGGHGSYCGLSYRAGNGALMNDLDGYPHVKPDFDNAEFALFIGTSPAQA 225 (735)
T ss_pred eEEEEEecCC-C-cchHHHHHHHHHcCCCCceeCCCCccccHHHHHHHHHhcCCCCCCcCCcCHhhCcEEEEeCCCHHHh
Confidence 544 32221 1 12288999995 59999999888888865444333322 2345689999999999999999999
Q ss_pred ccHH---HHHHHHhhhcCCceEEEEcCCCCccc---c--ccc----cCCCHHHHHHHH----------------------
Q psy14128 186 APLF---NARIRKGYLTNELDVAYIGPKVDLRY---D--YEH----LGESADLIKQLA---------------------- 231 (393)
Q Consensus 186 ~p~l---~~rlr~a~~~~gakiivi~p~~~~~~---~--~~~----lg~~~~~l~~l~---------------------- 231 (393)
+|.+ ..++.++..++|+|||||||+.+.+. . ..| +|+|.+++..|+
T Consensus 226 ~~~~~~~~~~l~~a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlpIrPGTD~AL~lam~~~Iie~~~yD~~Fl~~~~~~a~ 305 (735)
T cd02758 226 GNPFKRQARRLAEARTEGNFKYVVVDPVLPNTTSAAGENIRWVPIKPGGDGALAMAMIRWIIENERYNAEYLSIPSKEAA 305 (735)
T ss_pred CCCcchHHHHHHHHHHhCCCEEEEECCCCCccccccccCCEEECCCCCcHHHHHHHHHHHHHHCCCccHHHHhccchhhh
Confidence 9987 67777776457999999999876665 3 233 466655432220
Q ss_pred ---------------------cc--------------------------HHHHHHHHHhCCCCEEEEcCccccccCHHHH
Q psy14128 232 ---------------------SG--------------------------SHAFSKKLAAAKKPLIVVGADMLSRSDGAAV 264 (393)
Q Consensus 232 ---------------------~g--------------------------~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~ 264 (393)
.| ++++|+.++++++.++++++|..++.+|...
T Consensus 306 ~~~g~~~~tna~~lv~~v~v~~gfe~l~e~~~~~Tpe~~a~icGVp~~~I~~lAr~fa~~~~~~~~~~~G~~~~~nG~~~ 385 (735)
T cd02758 306 KAAGEPSWTNATHLVITVRVKSALQLLKEEAFSYSLEEYAEICGVPEAKIIELAKEFTSHGRAAAVVHHGGTMHSNGFYN 385 (735)
T ss_pred ccccccccccccccccccccccHHHHHHHHhhcCCHHHHHHHHCcCHHHHHHHHHHHHhcCCceEEEccCcccccccHHH
Confidence 11 5789999999988999999999999999999
Q ss_pred HHHHHHHHHHhCCCcccCCC
Q psy14128 265 LALVQQLAAKVTCESDHLGE 284 (393)
Q Consensus 265 ~~~~~~l~~~tg~~~~~~~~ 284 (393)
..++.+|..+|| +++..++
T Consensus 386 ~~Ai~~L~~LtG-nig~~GG 404 (735)
T cd02758 386 AYAIRMLNALIG-NLNWKGG 404 (735)
T ss_pred HHHHHHHHHHhC-CCCCCCC
Confidence 999999999999 6777663
No 38
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=99.95 E-value=2.5e-27 Score=255.39 Aligned_cols=290 Identities=20% Similarity=0.192 Sum_probs=222.7
Q ss_pred HHccC--chHHhhhhhcCCCEEEeC-----CceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccH--HHHHHHHHHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVG-----ADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLAD--AEAMVALKDL 132 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g-----~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t--~E~~~~~~k~ 132 (393)
|.+|. .....+.+|+++||++.. ++|+++||++|++.+++++ .++.++.+.+.+.+ +|+.|+.++|
T Consensus 82 C~kg~~~~~~~~~~~RL~~Pl~r~~g~rg~g~f~~ISWdeA~~~ia~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~ 156 (765)
T COG0243 82 CAKGARGRERVYSPDRLKYPLLRRVGKRGEGKFVRISWDEALDLIAAKL-----LPRIIGFYGSGALTTGNEAGYLAGKL 156 (765)
T ss_pred cccCcceeeeeeCchhhcCccccCCCCCCCCceEEecHHHHHHHHHHHh-----cchhhhccCchhhccCccchHHHhHH
Confidence 34453 467788899999988763 5899999999999999985 34556666666666 9999999999
Q ss_pred HHH-hCCCCccccCCCCccchhhhhhhccc---CCCCccCccccCEEEEecCCcCccccHHHH---HHHHhhhcCCceEE
Q psy14128 133 LNK-LGSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNA---RIRKGYLTNELDVA 205 (393)
Q Consensus 133 ~~~-lGt~nid~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~---rlr~a~~~~gakii 205 (393)
++. +|++|+++..++|+.+...++..+++ .+.+++|+++||+|++||+|+.++||++.. +.+++ +++|+||+
T Consensus 157 ~~~~~~~~n~~~~~~~C~~~~~~~~~~~~G~~~~~~~~~D~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~-~~~~~kvi 235 (765)
T COG0243 157 ARAFLGGNNIDHCGRYCHAAAAAGLPYTFGSGAATGSYPDIENADLIVLWGSNPAEAHPVLGRGLLLAKAA-KRSGAKVI 235 (765)
T ss_pred HHhcccCCCcCCCccccccchhhhhcccccCCCCCccHhhHhcCCEEEEECCChHHhCcchhhHHHHHHHh-ccCCCEEE
Confidence 997 99999999999999876666654443 467799999999999999999999998885 33333 35788999
Q ss_pred EEcCCCCcccc--c----cccCCCHHHHHHHHc---------------------------------------------c-
Q psy14128 206 YIGPKVDLRYD--Y----EHLGESADLIKQLAS---------------------------------------------G- 233 (393)
Q Consensus 206 vi~p~~~~~~~--~----~~lg~~~~~l~~l~~---------------------------------------------g- 233 (393)
+|||+.+.|+. . +.+|+|.+++..|+. |
T Consensus 236 viDP~~t~Ta~~ad~~l~irPGTD~Al~~gi~~~li~~~~~D~~Fl~~~t~~g~~~~~~~~~~~~~~~~t~e~~~~itGv 315 (765)
T COG0243 236 VIDPRRTETAALADLWLPIRPGTDAALALGIAHVLIEENLYDEEFLAKYTNVGFDEFAYLLGLEDAEAKTPEWAEAITGV 315 (765)
T ss_pred EECCCCChhHHhhCCccccCCCcHHHHHHHHHHHHHHcCcccHHHHHHHhhcccchhhhhccccccccCCHHHHHHhhhH
Confidence 99998777743 2 345777765544320 1
Q ss_pred ---HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCc-------ccccc-ccccC-------
Q psy14128 234 ---SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGES-------ADLIK-QLASG------- 295 (393)
Q Consensus 234 ---~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~-------~n~~G-~~~~g------- 295 (393)
++++|+.+++++++++++|+|+.||.+|+..+.++.+|+.++| +++.++.+ .|.+| ....+
T Consensus 316 ~~~I~~~A~~~a~~~~~~~~~g~G~~qh~~G~~~~~ai~~L~ll~G-nig~pGgg~~~~~g~~~~~g~~~~~g~~~~~~~ 394 (765)
T COG0243 316 AEEIRQLARLFAAAKPVTILWGMGIQQHANGEQTVRAIANLALLTG-NIGKPGGGVFPLRGHSNAQGGARDVGGLVKPLP 394 (765)
T ss_pred HHHHHHHHHHHhcCCceEEeeccchhHHHHhHHHHHHHHHHHHHhC-CCCCCCCCCCcccCcccccccccccccCCCCCc
Confidence 4567888888999999999999999999999999999999999 77877776 34444 32222
Q ss_pred CC----cHH--------------------HH-hhc--ccCcEEEEcCCCC-CCCChhhHH--------------------
Q psy14128 296 SH----AFS--------------------KK-LAA--AKKPLIVVGADML-SRSDGAAVL-------------------- 327 (393)
Q Consensus 296 g~----~~~--------------------~~-~~~--~~~al~v~g~np~-~~p~~~~v~-------------------- 327 (393)
+. ... +. .+. .+|++|++|.||+ +.|+...+.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ik~l~~~~~Np~~~~p~~~~~~~~~~~~~~~vVv~D~~~t~T 474 (765)
T COG0243 395 GLPVVRAKTAIPWGRPTDAAAKPGLSTADRALLEGPYPIKALFVYGGNPVVSAPDDRNVKKALLRDDEFVVVIDIFMTET 474 (765)
T ss_pred cccccchhhhhhhhCcchhhhCCcceeecccccccCCCeEEEEEeCCCchhcCchhhHHHHHHhcCCCeEEEEccCCCHH
Confidence 11 100 01 112 5899999999999 799875433
Q ss_pred ------------------------H-HhhhhhhccCCCCCCCcchHHHHHHHHHHHhcc
Q psy14128 328 ------------------------A-LVQQLAAKVTCESDVPCDWKVLNILQKAASQVA 361 (393)
Q Consensus 328 ------------------------~-~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g 361 (393)
+ ++|...++++|||++++||+|+ .++|.+++
T Consensus 475 a~~ADivLPa~~~~E~~~~~~~~~~~~v~~~~~~v~P~gea~~d~~ii---~~la~~~~ 530 (765)
T COG0243 475 AKYADIVLPATTFLEKDDIYTNAGRSYVQLRRKVVEPPGEARPDYWII---IELAKRLL 530 (765)
T ss_pred HHhhhhhCCccccccccCccccCCcceEEEeeeccCCCccccccHHHH---HHHHHHhc
Confidence 6 9999999999999999998885 55555543
No 39
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=99.95 E-value=7.3e-26 Score=237.90 Aligned_cols=213 Identities=15% Similarity=0.073 Sum_probs=162.5
Q ss_pred chHHhhhhhcCCCEEEeC----CceeeeChHHHHHHHHHHHHHhc-cCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCc
Q psy14128 67 HPFSKKLSAAKKPLIVVG----ADMLSRSDGAAVLALVQQLAAKV-TCESDVAGVVGSLADAEAMVALKDLLNKLGSEDL 141 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g----~~~~~~~~~~al~~~a~~l~~~~-~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~ni 141 (393)
.++..+.+|+++||+|.| ++|++++|+||+..++++|.+.. .++++++++.|.... .++.++|++.+||+|+
T Consensus 46 ~~~vyspdRL~~PL~R~g~RG~g~f~~ISWDEAld~IA~kL~~i~~~gp~~ia~~~g~~~~---~~l~~~f~~~lGt~n~ 122 (679)
T cd02763 46 IMKQYSPARLTKPLLRKGPRGSGQFEEIEWEEAFSIATKRLKAARATDPKKFAFFTGRDQM---QALTGWFAGQFGTPNY 122 (679)
T ss_pred HHhhcCcchhcCCEEeccCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCccH---HHHHHHHHHhcCCCCc
Confidence 467788999999999985 78999999999999999997653 468889988776543 4677899999999999
Q ss_pred cccCCCCccchhhhhhhccc---CCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcccc--
Q psy14128 142 YTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYD-- 216 (393)
Q Consensus 142 d~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~-- 216 (393)
+...++|......+...+++ ...++.|+++||+||+||+|+..+.+.+..+++++. ++|+|||+|||+.+.+..
T Consensus 123 ~~~~~~C~~~~~~a~~~~~G~~~~~~~~~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak-~~GaKlIvIDPr~t~ta~~A 201 (679)
T cd02763 123 AAHGGFCSVNMAAGGLYSIGGSFWEFGGPDLEHTKYFMMIGVAEDHHSNPFKIGIQKLK-RRGGKFVAVNPVRTGYAAIA 201 (679)
T ss_pred CCCCCcchHHHHHHHHHhhCCCCCCCChhHHHhCCEEEEECCCCcccCchHHHHHHHHH-hCCCcEEEEcCcCCcchHhh
Confidence 98888887643333332222 234578999999999999998766555667788775 589999999998776633
Q ss_pred ccc----cCCCHHHHHHHHc---------------------------------------cHHHHHHHHHhCC--------
Q psy14128 217 YEH----LGESADLIKQLAS---------------------------------------GSHAFSKKLAAAK-------- 245 (393)
Q Consensus 217 ~~~----lg~~~~~l~~l~~---------------------------------------g~~~~a~~l~~a~-------- 245 (393)
..| +|+|..++.+|+. .++++|+.+++++
T Consensus 202 D~wl~irPGTD~aL~lal~~~Li~~g~~D~~Fl~~~t~g~~l~~ytpe~aa~itGV~ae~I~~lA~~~a~~~~~~~~~~~ 281 (679)
T cd02763 202 DEWVPIKPGTDGAFILALAHELLKAGLIDWEFLKRYTNAAELVDYTPEWVEKITGIPADTIRRIAKELGVTARDQPIELP 281 (679)
T ss_pred CeecCcCCCcHHHHHHHHHHHHHHCCCcCHHHHHHHcCcHHhhcCCHHHHHHHHCcCHHHHHHHHHHHHhcccccccccc
Confidence 334 4677666554421 1678899998753
Q ss_pred ----------------CCEEEE-cCccccccCHHHHHHHHHHHHHHhCCCcccCCC
Q psy14128 246 ----------------KPLIVV-GADMLSRSDGAAVLALVQQLAAKVTCESDHLGE 284 (393)
Q Consensus 246 ----------------~~~ii~-G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~ 284 (393)
++++++ +.|+.+|.+|.....++.+|..+|| .++.+++
T Consensus 282 ~~~~~~~g~~~~~~~~~pv~~~~~~G~~~~~nG~~~~rAi~~L~aLtG-nig~pGG 336 (679)
T cd02763 282 IAWTDVWGRKHEKITGRPVSFHAMRGIAAHSNGFQTIRALFVLMMLLG-TIDRPGG 336 (679)
T ss_pred cccccccccccccccCcceEEeccccccccccHHHHHHHHHHHHHHhC-CCCCCCC
Confidence 455555 5699999999999999999999999 6766554
No 40
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=99.95 E-value=1.4e-26 Score=244.02 Aligned_cols=290 Identities=15% Similarity=0.122 Sum_probs=211.1
Q ss_pred chHHhhhhhcCCCEEEeC----CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcc-cH--HHHHHHHHHHHHHhC
Q psy14128 67 HPFSKKLSAAKKPLIVVG----ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSL-AD--AEAMVALKDLLNKLG 137 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g----~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~-~t--~E~~~~~~k~~~~lG 137 (393)
.++..+.+|+++||+|.| ++|++++|++|++.+|++|.+. .||+++++.+.+.. .+ .+..+.+++|++.+|
T Consensus 51 ~~~~y~p~Rl~~Pl~R~g~rG~g~~~~isWDeAl~~ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~g 130 (617)
T cd02770 51 RKRVYNPDRLKYPMKRVGKRGEGKFVRISWDEALDTIASELKRIIEKYGNEAIYVNYGTGTYGGVPAGRGAIARLLNLTG 130 (617)
T ss_pred hhhhcChhHhcCCceecCcCCCCCeEEecHHHHHHHHHHHHHHHHHHhCchheEeeccccccCccccchHHHHHHHHhcC
Confidence 456788899999999986 6899999999999999999764 58999998765432 22 334567789999898
Q ss_pred CCCccccCCCCccchhhhhhhccc---CCCCccCccccCEEEEecCCcCccccH---HHHHHHHhhhcCCceEEEEcCCC
Q psy14128 138 SEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPL---FNARIRKGYLTNELDVAYIGPKV 211 (393)
Q Consensus 138 t~nid~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~IL~iG~n~~~~~p~---l~~rlr~a~~~~gakiivi~p~~ 211 (393)
+. .++...+|......+...+++ .+.++.|+++||+||+||+|+.++++. ...+++++. ++|+|||||||+.
T Consensus 131 ~~-~~~~~~~c~~~~~~~~~~~~G~~~~~~~~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~-~~G~klivIDPr~ 208 (617)
T cd02770 131 GY-LNYYGTYSWAQITTATPYTYGAAASGSSLDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAK-KAGAKFIVIDPRY 208 (617)
T ss_pred Cc-cCCCCCccHhHHhhhhceEEecCCCCCCHHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHH-HcCCeEEEECCCC
Confidence 64 333334555432223332222 245789999999999999999999985 556777775 5899999999987
Q ss_pred Ccccc---ccc----cCCCHHHHHHHH-----------------------------------------------------
Q psy14128 212 DLRYD---YEH----LGESADLIKQLA----------------------------------------------------- 231 (393)
Q Consensus 212 ~~~~~---~~~----lg~~~~~l~~l~----------------------------------------------------- 231 (393)
+.++. ..| +|+|.+++..|+
T Consensus 209 t~tA~~~AD~~i~irPGTD~AL~lam~~~ii~e~l~D~~Fi~~~t~gfd~~~~~~~~~~~~~~~~~~~~~~~dg~~~tpe 288 (617)
T cd02770 209 TDTAVTLADEWIPIRPGTDAALVAAMAYVMITENLHDQAFLDRYCVGFDAEHLPEGAPPNESYKDYVLGTGYDGTPKTPE 288 (617)
T ss_pred CccccccCCEEECCCCCcHHHHHHHHHHHHHHCCCccHHHHHHhccCCCcccCcccCCcccchHHHhcCcccCCCcCCHH
Confidence 76642 333 467766543321
Q ss_pred ----------ccHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCcccccc-------cccc
Q psy14128 232 ----------SGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIK-------QLAS 294 (393)
Q Consensus 232 ----------~g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G-------~~~~ 294 (393)
+-++++|+.|+++++++|++|.++.++.++.....++..|+.+|| .++..+.+..... ....
T Consensus 289 ~a~~itGV~ae~I~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~altG-nig~~Ggg~~~~~~~~~~~~~~~~ 367 (617)
T cd02770 289 WASEITGVPAETIRRLAREIATTKPAAILQGWGPQRHANGEQAARAIMMLAAMTG-NVGIPGGNTGARPGGSAYNGAGLP 367 (617)
T ss_pred HHHHHHCcCHHHHHHHHHHHHhCCCcEEEecccHHHHhhhhHHHHHHHHHHHHhC-CCCCCCCCCCcCCCCCCCCcccCC
Confidence 015778999999999999999999999999999999999999999 6877776532211 0000
Q ss_pred C-----CCc-----HHHHh-------------------hcccCcEEEEcCCCC--CCCChhhHH----------------
Q psy14128 295 G-----SHA-----FSKKL-------------------AAAKKPLIVVGADML--SRSDGAAVL---------------- 327 (393)
Q Consensus 295 g-----g~~-----~~~~~-------------------~~~~~al~v~g~np~--~~p~~~~v~---------------- 327 (393)
. ... ..+.+ ...+|++|++|.||+ +.||...++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~l~~~~~Np~~~~~p~~~~~~~al~~~~~kldf~Vv~ 447 (617)
T cd02770 368 AGKNPVKTSIPCFMWTDAIERGEEMTADDGGVKGADKLKSNIKMIWNYAGNTLINQHSDDNNTTRALLDDESKCEFIVVI 447 (617)
T ss_pred CCCCcccccccHHHHHHHHHCCCceeccCCCcccccccCCCcEEEEECCCCchhhcCccHHHHHHHHhcccccCCEEEEe
Confidence 0 000 11111 135899999999998 677543221
Q ss_pred -----------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccc
Q psy14128 328 -----------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAA 362 (393)
Q Consensus 328 -----------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~ 362 (393)
+++|..+++++|||++|+||+| +.++|+++|.
T Consensus 448 D~~~teTa~~ADiVLPa~t~~E~~~~~~~~~~~~~~~~~~~~~~i~P~gear~d~~I---~~~La~rlG~ 514 (617)
T cd02770 448 DNFMTPSARYADILLPDTTELEREDIVLTSNAGMMEYLIYSQKAIEPLYECKSDYEI---CAELAKRLGV 514 (617)
T ss_pred ccccCchhhhhheecccCcHHhhcccccccccCCCceEEeeccccCCCccCcCHHHH---HHHHHHHhCC
Confidence 3578899999999999999999 6777788885
No 41
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=99.95 E-value=9.6e-27 Score=250.90 Aligned_cols=290 Identities=16% Similarity=0.143 Sum_probs=206.1
Q ss_pred cCchHHhhhhhcCCCEEEeC---------------CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEc-----CcccH
Q psy14128 65 GSHPFSKKLSAAKKPLIVVG---------------ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVV-----GSLAD 122 (393)
Q Consensus 65 ~~~~~~~~l~r~~~PlI~~g---------------~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~-----g~~~t 122 (393)
+..++..+.+|+++||+|.| ++|+++||+||++.+|++|.+. +||+++|+.+. ++...
T Consensus 34 ~~~~~~y~pdRl~~PL~R~g~~~~~~~~~~~~rG~g~f~~iSWDEAl~~IA~kl~~i~~~~G~~si~~~~~~~~~~g~~~ 113 (770)
T TIGR00509 34 GVPDQVYSESRIKYPMVRKGFLENGVKSDRSGRGREEFVRVSWDEALDLVAEELKRVRKTHGPSAIFAGSYGWKSAGRLH 113 (770)
T ss_pred cchhhccChhhccCCeeecchhhccCCCccccCCCCCeEEecHHHHHHHHHHHHHHHHHhcCChhheecccCcccCCccc
Confidence 34678889999999999986 7899999999999999999764 58999987532 23334
Q ss_pred HHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhc------ccCCCCcc-CccccCEEEEecCCcCccccH-------
Q psy14128 123 AEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRAN------YLLNNKIA-GAEEADLILLIGTNPRFEAPL------- 188 (393)
Q Consensus 123 ~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~------~~~~~~~~-~ie~AD~IL~iG~n~~~~~p~------- 188 (393)
+| .+++++|++.+|+.+ ++...+|........... ++.+.+.. ++++||+||+||+|+.+++|+
T Consensus 114 ~~-~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~a~~il~~G~Np~~t~~~~~~~~~~ 191 (770)
T TIGR00509 114 NA-STLLQRMLNLLGGYV-GHAGDYSTGAAQVIMPHVVGDMEVYEQQTTWPVILENSKVLVLWGADPLKTSQIAWGIPDH 191 (770)
T ss_pred cc-HHHHHHHHHhcCCCc-CCCCCcchhhHhhccCceeecccccCCcCCcHHHHhcCCEEEEeCCCHHHhCccccccCCc
Confidence 44 678899999998532 222344543211111111 11122333 379999999999999999863
Q ss_pred -HHHHHHHhhhcCCceEEEEcCCCCcccc---ccc----cCCCHHHHHHHHc------------------c---------
Q psy14128 189 -FNARIRKGYLTNELDVAYIGPKVDLRYD---YEH----LGESADLIKQLAS------------------G--------- 233 (393)
Q Consensus 189 -l~~rlr~a~~~~gakiivi~p~~~~~~~---~~~----lg~~~~~l~~l~~------------------g--------- 233 (393)
...+++++. ++|+|||||||+.+.++. ..| +|+|.+++.+|+. |
T Consensus 192 ~~~~~~~~a~-~~G~klIvIDPr~t~tA~~aaD~~l~irPGTD~AL~lam~~~ii~e~l~D~~fi~~~t~gfe~~~~~l~ 270 (770)
T TIGR00509 192 GGYEYLERLK-AKGKRVISIDPVRTETAEFFGAEWIPPNPQTDVALMLGLAHTLVTEGLYDKDFLAKYTSGFEKFLPYLL 270 (770)
T ss_pred chHHHHHHHH-HcCCEEEEEcCCCCcchhhccCeEeCcCCCcHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHhc
Confidence 346677775 689999999998877733 344 4777665544321 0
Q ss_pred -----------------------HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccc-
Q psy14128 234 -----------------------SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLI- 289 (393)
Q Consensus 234 -----------------------~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~- 289 (393)
++++|+.|+++ +++|++|.+..++.++.....++..|..+|| +++.++++.+..
T Consensus 271 ~~~~g~~~tpe~aa~itGV~a~~I~~lA~~~a~~-~~~i~~g~g~~~~~~g~~~~rai~~L~altG-nig~~Ggg~~~~~ 348 (770)
T TIGR00509 271 GETDGTPKTAEWASKITGVPAETIKELARLFASK-RTMLAAGWSMQRMQHGEQPHWMLVTLAAMLG-QIGLPGGGFGFSY 348 (770)
T ss_pred CCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhc-cceeeccchhhhhhcchHHHHHHHHHHHHhC-cCCCCCccccccc
Confidence 57788999876 5788888888888889999999999999999 677777653211
Q ss_pred -----------cccccCC-------------------Cc---HHHHhh---------------cccCcEEEEcCCCC-CC
Q psy14128 290 -----------KQLASGS-------------------HA---FSKKLA---------------AAKKPLIVVGADML-SR 320 (393)
Q Consensus 290 -----------G~~~~gg-------------------~~---~~~~~~---------------~~~~al~v~g~np~-~~ 320 (393)
|....++ .. +.+.+. ..+|++|++|.||+ +.
T Consensus 349 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ik~l~v~g~Np~~s~ 428 (770)
T TIGR00509 349 HYSGGGTPSASGPALSQGSNSVSTKAPEWLDDGGASVIPVARISDALLNPGKEIDYNGKELKLPDIKMVYWAGGNPFHHH 428 (770)
T ss_pred CcCCCCCCCccCCCCcccCCccccccchhhhccccccccHHHHHHHhhCCCCeeccCCccccCCCeEEEEECCCChhHhC
Confidence 1000000 01 111111 25899999999998 99
Q ss_pred CChhhHH----------------------------------------------HHhhhhhhccCCCCCCCcchHHHHHHH
Q psy14128 321 SDGAAVL----------------------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQ 354 (393)
Q Consensus 321 p~~~~v~----------------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~ 354 (393)
||.+.++ +++|..+++++|+|++|+||+| +.
T Consensus 429 p~~~~~~~aL~~ldf~Vv~D~f~teTa~~ADiVLPaat~lE~~d~~~~~~~~~~~~~~~~~~v~P~ge~r~d~~I---~~ 505 (770)
T TIGR00509 429 QDTNRLIKAWRKLETIIVHEPQWTPTAKHADIVLPATTSFERNDLTMAGDYSNTGILAMKQVVPPQFEARNDYDI---FA 505 (770)
T ss_pred CCHHHHHHHHhcCCEEEEecCcCCchHhhCCEEeCCCchhhcccccccccccCCeeEEeecccCCCccccCHHHH---HH
Confidence 9988766 4688899999999999999999 56
Q ss_pred HHHHhccc
Q psy14128 355 KAASQVAA 362 (393)
Q Consensus 355 ~~a~~~g~ 362 (393)
++|.+||.
T Consensus 506 ~LA~rlg~ 513 (770)
T TIGR00509 506 ALAERLGV 513 (770)
T ss_pred HHHHHhCc
Confidence 67777774
No 42
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=99.94 E-value=4.1e-26 Score=229.88 Aligned_cols=286 Identities=17% Similarity=0.130 Sum_probs=204.3
Q ss_pred HHccC--chHHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCC
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSE 139 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~ 139 (393)
+.+|+ .++..+.+|+++||+|.+++|++.+|++|+..++++|.+... ..++.++..++|+.+.+++|++.+|+
T Consensus 30 C~kg~~~~~~~~~~~Rl~~Pl~R~~g~~~~isWdeAl~~ia~~l~~~~~----~~~~~~~~~~~e~~~~~~~l~~~~g~- 104 (421)
T TIGR03129 30 CRIGAAKFKEAEESHRITRPMIRKNGDGKEVSYEEAIEKAAEILKNAKR----PLIYGWSSTSCEAQRAGLELAEKLGA- 104 (421)
T ss_pred CcccHHHHhhccCCcccCCCeEcCCCCeeeCChHHHHHHHHHHHHhhcC----CeEEEcccCCHHHHHHHHHHHHHHCC-
Confidence 44453 456678899999999999999999999999999999976531 24566777789999999999999997
Q ss_pred CccccCCCCccchhhhhhhcccCCCCccCcc-ccCEEEEecCCcCccccHHHHHH--------HHhhhcCCceEEEEcCC
Q psy14128 140 DLYTEYAFPLEGAGTDLRANYLLNNKIAGAE-EADLILLIGTNPRFEAPLFNARI--------RKGYLTNELDVAYIGPK 210 (393)
Q Consensus 140 nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie-~AD~IL~iG~n~~~~~p~l~~rl--------r~a~~~~gakiivi~p~ 210 (393)
++++....|.......+........++.|++ +||+||+||+|+.+++|....|+ +++. ++|++|++|||+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~-~~g~~lividp~ 183 (421)
T TIGR03129 105 VIDNTASVCHGPSLLALQEVGWPSCTLGEVKNRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRG-REDRTVIVVDPR 183 (421)
T ss_pred CccccchhccccHHHHHHhcCCccccHHHHhhcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcc-cCCCEEEEECCC
Confidence 4665444555432222222222344577887 69999999999999999877664 3332 578999999997
Q ss_pred CCcccc--ccc----cCCCHHHHHHHHc------------------cHHHHHHHHHhCCCCEEEEcCccccccCHH----
Q psy14128 211 VDLRYD--YEH----LGESADLIKQLAS------------------GSHAFSKKLAAAKKPLIVVGADMLSRSDGA---- 262 (393)
Q Consensus 211 ~~~~~~--~~~----lg~~~~~l~~l~~------------------g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~---- 262 (393)
.+.+.. ..| +|++..++..+.. .++++|+.|+++++++|++|.++.++.++.
T Consensus 184 ~s~t~~~ad~~l~i~pgtd~~l~~~l~~~l~~~~~~~~~~~gv~~~~i~~la~~l~~a~~~~i~~g~g~~~~~~~~~~~~ 263 (421)
T TIGR03129 184 KTDTAKLADYHLQIKPGSDYELISALRAVLRGKEPQPEEVAGIPKEKILELAEILKNAKFGVIFFGLGLTSSLGKHRNVE 263 (421)
T ss_pred CCCcchhhcceeccCCCCcHHHHHHHHHHHccCCcchhhhcCCCHHHHHHHHHHHHhCCceEEEEecccccccCcchHHH
Confidence 776633 233 4677766544421 157799999999999999999998766444
Q ss_pred HHHHHHHHHHHHhCCCcccCCCccccccccccC----------------------CCcHHHHhh-cccCcEEEEcCCCC-
Q psy14128 263 AVLALVQQLAAKVTCESDHLGESADLIKQLASG----------------------SHAFSKKLA-AAKKPLIVVGADML- 318 (393)
Q Consensus 263 ~~~~~~~~l~~~tg~~~~~~~~~~n~~G~~~~g----------------------g~~~~~~~~-~~~~al~v~g~np~- 318 (393)
.+...+..|...+++.+..+++..|..|+...+ +..+.+++. +.++++|++|.||+
T Consensus 264 ~~~~l~~~l~~~~~~~~~~l~g~~~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~g~i~~l~~~g~Np~~ 343 (421)
T TIGR03129 264 IAIELVKDLNKYTKFTIIPMRGHYNVAGFNQVLTWETGYPFGVDFSRGYPRYNPGETTTVDLLKRKEVDAALIIGSDPGA 343 (421)
T ss_pred HHHHHHHHhCcccceeeeeCcCcCCccccccccccccCCCccccHhhcCCCCCCCcchHHHHHhcCCCCEEEEeCCChhh
Confidence 344445555555555666777666666552111 234455553 57999999999998
Q ss_pred CCCChhh--------HH---------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHH
Q psy14128 319 SRSDGAA--------VL---------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQK 355 (393)
Q Consensus 319 ~~p~~~~--------v~---------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~ 355 (393)
++||... |. +++|.++++++|++ |+||+||..|++
T Consensus 344 ~~p~~~~~al~~~~~Vv~d~~~teTa~~ADvvLP~~~~~~E~~g~~~~~~~~~~~~~~~v~p~~--~~~~~i~~~La~ 419 (421)
T TIGR03129 344 HFPQDAVKHLAEIPVIVIDPHPTPTTEIADVVIPVAIDGIEAGGTAYRMDNVPIRLRKVIESPE--PSDEEILKKILE 419 (421)
T ss_pred hCcHHHHHhhccCCEEEECCCCCCccccCCEEecCCccceecCccEEecCCeEEEeeccCCCCC--CCHHHHHHHHHh
Confidence 8887521 00 78899999999987 999999655443
No 43
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=99.94 E-value=1.4e-26 Score=243.47 Aligned_cols=289 Identities=15% Similarity=0.129 Sum_probs=204.7
Q ss_pred CchHHhhhhhcCCCEEEeC---------------CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcC-----cccHH
Q psy14128 66 SHPFSKKLSAAKKPLIVVG---------------ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVG-----SLADA 123 (393)
Q Consensus 66 ~~~~~~~l~r~~~PlI~~g---------------~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g-----~~~t~ 123 (393)
..++..+.+|+++||+|+| ++|+++||+||++.+|++|.+. +||+++|+.+.+ +...+
T Consensus 37 ~~~~~y~pdRl~~PlkR~g~~~~~~~~~~g~rG~g~~~~ISWdEAld~IA~kl~~i~~~~G~~si~~~~~~~~~~g~~~~ 116 (609)
T cd02769 37 VPDAVYSPTRIKYPMVRRGWLEKGPGSDRSLRGKEEFVRVSWDEALDLVAAELKRVRKTYGNEAIFGGSYGWSSAGRFHH 116 (609)
T ss_pred chhhccChhhccCCceechhhhcCCCCCcccCCCCCeEEecHHHHHHHHHHHHHHHHHhhCcHhhcccCcccccCccccc
Confidence 3567889999999999985 7899999999999999999764 589999864321 22222
Q ss_pred HHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcc-------cCCCCccC-ccccCEEEEecCCcCccccH-------
Q psy14128 124 EAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANY-------LLNNKIAG-AEEADLILLIGTNPRFEAPL------- 188 (393)
Q Consensus 124 E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~-------~~~~~~~~-ie~AD~IL~iG~n~~~~~p~------- 188 (393)
+.+.+++|++.+|+.+ .+...+|..........++ +.+.+..+ +++||+||+||+|+.+++|+
T Consensus 117 -~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~d~~~~a~~il~wG~Np~~t~~~~~~~~~~ 194 (609)
T cd02769 117 -AQSLLHRFLNLAGGYV-GSVGDYSTGAAQVILPHVVGSMEVYTEQQTSWPVIAEHTELVVAFGADPLKNAQIAWGGIPD 194 (609)
T ss_pred -chHHHHHHHhccCCcc-CCCCCccHHHHHhhhhheeCChhhccccCCChHHHHhhCCeEEEECCChHHhCcccccccCC
Confidence 3466789999998533 2222344422111111111 11223444 68999999999999998763
Q ss_pred --HHHHHHHhhhcCCceEEEEcCCCCcccc---ccc----cCCCHHHHHHHHc---------------------------
Q psy14128 189 --FNARIRKGYLTNELDVAYIGPKVDLRYD---YEH----LGESADLIKQLAS--------------------------- 232 (393)
Q Consensus 189 --l~~rlr~a~~~~gakiivi~p~~~~~~~---~~~----lg~~~~~l~~l~~--------------------------- 232 (393)
+..+++++. ++|+|||||||+.+.++. ..| +|+|.+++..|+.
T Consensus 195 ~~~~~~~~~ar-~~GaklIvIDPr~t~tA~~add~~l~irPGTD~ALalam~~~ii~e~~~D~~Fv~~~t~Gfe~~~~~l 273 (609)
T cd02769 195 HQAYSYLKALK-DRGIRFISISPLRDDTAAELGAEWIAIRPGTDVALMLALAHTLVTEGLHDKAFLARYTVGFDKFLPYL 273 (609)
T ss_pred cchHHHHHHHH-hCCCEEEEEcCCCCcchhhhcCcEeccCCCcHHHHHHHHHHHHHHcCCccHHHHHHHccCHHHHHHHh
Confidence 335576664 689999999998777743 234 4777665443311
Q ss_pred -----------------------cHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCcc---
Q psy14128 233 -----------------------GSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESA--- 286 (393)
Q Consensus 233 -----------------------g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~--- 286 (393)
.++++|+.|++ ++++|++|.++.++.++.....++..|..+|| +++.++++.
T Consensus 274 ~~~~dg~~~tpe~aa~itGV~ae~I~~lA~~~a~-~~~~i~~g~g~~~~~~g~~~~rai~~L~aLtG-nig~pGgg~~~~ 351 (609)
T cd02769 274 LGESDGVPKTPEWAAAICGIPAETIRELARRFAS-KRTMIMAGWSLQRAHHGEQPHWMAVTLAAMLG-QIGLPGGGFGFG 351 (609)
T ss_pred cCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHhh-cCcEEEecccchhhhcccHHHHHHHHHHHHhC-CCCCCCCccccC
Confidence 05778999987 57899999999999999999999999999999 677776653
Q ss_pred ----ccccccccC--------C----------CcHHHHhh---------------cccCcEEEEcCCCC-CCCChhhHH-
Q psy14128 287 ----DLIKQLASG--------S----------HAFSKKLA---------------AAKKPLIVVGADML-SRSDGAAVL- 327 (393)
Q Consensus 287 ----n~~G~~~~g--------g----------~~~~~~~~---------------~~~~al~v~g~np~-~~p~~~~v~- 327 (393)
|..+..... + ..+.+++. ..+|++|++|.||+ +.||.+.++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~~~~~ik~l~~~g~Np~~~~p~~~~~~~ 431 (609)
T cd02769 352 YHYSNGGGPPRGAAPPPALPQGRNPVSSFIPVARIADMLLNPGKPFDYNGKKLTYPDIKLVYWAGGNPFHHHQDLNRLIR 431 (609)
T ss_pred cCcCCCCCCCCCCCCCCcccccCCCcceeecHHHHHHHHhCCCCeeeecCcccCCCCEEEEEECCCChHhcCcCHHHHHH
Confidence 221110000 0 01222221 24899999999998 999987765
Q ss_pred -------------------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccc
Q psy14128 328 -------------------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAA 362 (393)
Q Consensus 328 -------------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~ 362 (393)
+++|...++++|+|++|+||+| +.++|.++|.
T Consensus 432 al~~ldf~V~~D~~~teTa~~ADiVLPaat~~E~~d~~~~~~~~~~~~~~~~i~P~ge~k~d~~I---~~~LA~rlg~ 506 (609)
T cd02769 432 AWQKPETVIVHEPFWTATARHADIVLPATTSLERNDIGGSGDNRYIVAMKQVVEPVGEARDDYDI---FADLAERLGV 506 (609)
T ss_pred HHhcCCEEEEecCCCCcchhhccEEecCCcHhhhcCcccccCCceEEEeeeccCCcccccCHHHH---HHHHHHHhCC
Confidence 5789999999999999999999 6777888875
No 44
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=99.94 E-value=4.6e-26 Score=246.87 Aligned_cols=295 Identities=16% Similarity=0.130 Sum_probs=211.6
Q ss_pred HHccC--chHHhhhhhcCCCEEEeC----CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcC-ccc-----HHHHHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVG----ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVG-SLA-----DAEAMV 127 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g----~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g-~~~-----t~E~~~ 127 (393)
|.+|. .++..+.+|+++||+|.| ++|++++|++|+..+|++|.+. .+|+++++++.+ +.. ..++.+
T Consensus 89 C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~~iSWdeAl~~ia~kl~~i~~~~G~~sv~~~~g~g~~~~~~~~~~~~~ 168 (797)
T TIGR02166 89 CLRGRSMRRRVYNPDRLKYPMKRVGKRGEGKFERISWDEATDTIADNLKRIIEKYGNEAIYVNYGTGTTGGTMSRSWPPT 168 (797)
T ss_pred ChhhhhHHHhhcChhhhccCeeeccCCCCCCeEEecHHHHHHHHHHHHHHHHHHhCccceEeecccccccccccccchhH
Confidence 45553 567788999999999986 6899999999999999999764 589999986433 221 134446
Q ss_pred HHHHHHHHhCC-CCccccCCCCccchhhhhhhccc---CCCCccCccccCEEEEecCCcCcccc---HHHHHHHHhhhcC
Q psy14128 128 ALKDLLNKLGS-EDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAP---LFNARIRKGYLTN 200 (393)
Q Consensus 128 ~~~k~~~~lGt-~nid~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~IL~iG~n~~~~~p---~l~~rlr~a~~~~ 200 (393)
.+++|++.+|+ .+... +.|......+...+++ .+.++.|+++||+||+||+|+.+++| ....+++++.+++
T Consensus 169 ~~~r~~~~~g~~~~~~~--~~~~~~~~~~~~~~~G~~~~~~~~~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~ 246 (797)
T TIGR02166 169 AVARLLNLCGGYLNQYG--SYSTAQINEAMPYTYGISADGSSLDDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKS 246 (797)
T ss_pred HHHHHHHHhCCccccCC--CeecchhhcccceeEeecCCCCCHHHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHC
Confidence 78899999884 33222 2333222222222222 34568899999999999999999998 5556666665468
Q ss_pred CceEEEEcCCCCccc---cccc----cCCCHHHHHHHH------------------------------------------
Q psy14128 201 ELDVAYIGPKVDLRY---DYEH----LGESADLIKQLA------------------------------------------ 231 (393)
Q Consensus 201 gakiivi~p~~~~~~---~~~~----lg~~~~~l~~l~------------------------------------------ 231 (393)
|+|||+|||+.+.+. ...| +|+|.+++..|+
T Consensus 247 G~kiivvDPr~t~taa~~Ad~~l~irPGtD~al~~a~~~~ii~e~l~D~~Fi~~~t~gfd~~~~~~~~~~~~~~~~~~~~ 326 (797)
T TIGR02166 247 NARVIVIDPRYTDTVAGREDEWIPIRPGTDAALVAAIAYVMISENLHDQAFLDRYCVGFDEKTLPASAPKNGSYKDYILG 326 (797)
T ss_pred CCeEEEECCCCCccchhcCCEEECCCCCCHHHHHHHHHHHHHHCCcccHHHHHHhccccCCccCccccccccchHhhhcC
Confidence 999999999877653 2333 467766443321
Q ss_pred ---------------------ccHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCcccccc
Q psy14128 232 ---------------------SGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIK 290 (393)
Q Consensus 232 ---------------------~g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G 290 (393)
+-++++|+.|+++++++|++|.++.++.++.....++.+|..+|| +++..+++....+
T Consensus 327 ~~~~~~~~tpe~aa~itGV~~~~I~~lA~~~a~~~~~~i~~g~G~~~~~~g~~~~~ai~~L~aLtG-nig~~Ggg~~~~~ 405 (797)
T TIGR02166 327 EGADGTPKTPEWASKITGIPADTIIKLAREIGNAKPAFISQGWGPQRHANGEQAARAIMMLALLTG-NVGIKGGNNGARE 405 (797)
T ss_pred cccCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhcCCcEEEechhhhhhhcchHHHHHHHHHHHHhC-CCCCCCcCCccCC
Confidence 015778999999999999999999999999999999999999999 6887776542221
Q ss_pred cc----cc--------CCCcH------------------------HHHhhcccCcEEEEcCCCC--CCCChhhHH-----
Q psy14128 291 QL----AS--------GSHAF------------------------SKKLAAAKKPLIVVGADML--SRSDGAAVL----- 327 (393)
Q Consensus 291 ~~----~~--------gg~~~------------------------~~~~~~~~~al~v~g~np~--~~p~~~~v~----- 327 (393)
.. .. ..... .+++...+|++|++|.||+ +.||.+.++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~l~~~~~Np~~~~~p~~~~~~~al~~ 485 (797)
T TIGR02166 406 GNYSLPFARMPELPNPVKTSISCFLWTDAIDRGTEMTAIKDGVRGKDKLDSNIKFLWNYAGNCLINQHSDINRTHKILQD 485 (797)
T ss_pred CCCCCCCCCCCCCCCCccccccHHHHHHHHhcCCccccccCCccCCccCCCCeEEEEEcCCCceeccchhHHHHHHHhhc
Confidence 10 00 01100 0111235899999999997 478876543
Q ss_pred ---------------------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccc
Q psy14128 328 ---------------------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAA 362 (393)
Q Consensus 328 ---------------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~ 362 (393)
+++|...++++|||++|+||+| +.++|.+||.
T Consensus 486 ~~~ldf~Vv~D~~~teTa~~ADiVLPa~t~lE~~~~~~~~~~~~~~~~~~~~~~v~P~~e~r~d~~I---~~~LA~~lG~ 562 (797)
T TIGR02166 486 ESKCEMIVVIDNHMTSSAKYADILLPDTTTLEQNDFIEDSYASNMSYLIFMQKAIEPLFECKPIYDM---LSEVAKRLGV 562 (797)
T ss_pred ccCCCEEEEeecccCcchhhccEEecCCCccccCccccccccCCCceEEEeccCcCCcccccCHHHH---HHHHHHHhCC
Confidence 3688899999999999999999 6777777774
No 45
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=99.94 E-value=1.2e-25 Score=232.18 Aligned_cols=277 Identities=13% Similarity=0.064 Sum_probs=204.0
Q ss_pred chHHhhhhhcCCCEEEe--------CCceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHHHHh
Q psy14128 67 HPFSKKLSAAKKPLIVV--------GADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLLNKL 136 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~--------g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~~~l 136 (393)
.+...+.+|+++||+|. +++|++++|++|++.++++|.+. ++|+++++.+. ++.+.+..+++++|++.+
T Consensus 48 ~~~~y~pdRi~~Pl~R~~~rg~~~~~g~~~~isWdeAl~~ia~~l~~~~~~~g~~~i~~~~-g~~~~~~~~~~~r~~~~~ 126 (523)
T cd02757 48 LQQVYDPDRILYPMKRTNPRKGRDVDPKFVPISWDEALDTIADKIRALRKENEPHKIMLHR-GRYGHNNSILYGRFTKMI 126 (523)
T ss_pred hhhhcCccccccCeeecCCCCCCCCCCCeeEecHHHHHHHHHHHHHHHHHhcCCceEEEEe-CCCCCccchHHHHHHHHh
Confidence 45667889999999998 46899999999999999999764 57889986654 455566667889999999
Q ss_pred CCCCccccCCCCccchhhhhhhcc-cCCCCccCccccCEEEEecCCcCccccHHH--HHHHHhhhcCCceEEEEcCCCCc
Q psy14128 137 GSEDLYTEYAFPLEGAGTDLRANY-LLNNKIAGAEEADLILLIGTNPRFEAPLFN--ARIRKGYLTNELDVAYIGPKVDL 213 (393)
Q Consensus 137 Gt~nid~~~~~~~~~~~~~~~~~~-~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~--~rlr~a~~~~gakiivi~p~~~~ 213 (393)
|++|++.....|..+...+..... ....+..|+++||+||+||+|+.++++.+. .|++++. ++|+||++|||+.+.
T Consensus 127 Gs~~~~~~~~~c~~~~~~~~~~~~g~~~~~~~D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~-~~gakliviDPr~s~ 205 (523)
T cd02757 127 GSPNNISHSSVCAESEKFGRYYTEGGWDYNSYDYANAKYILFFGADPLESNRQNPHAQRIWGGK-MDQAKVVVVDPRLSN 205 (523)
T ss_pred CcCCCcCCcchhhhHHHHHHHHHhCCCCCCCcchhcCcEEEEECCChHHhCCCcHHHHHHHHHH-HCCCEEEEECCCCCh
Confidence 999886555566543222222222 112235689999999999999988765443 6777775 689999999998777
Q ss_pred ccc--cc----ccCCCHHHHHHHHc-------------------------------------------------------
Q psy14128 214 RYD--YE----HLGESADLIKQLAS------------------------------------------------------- 232 (393)
Q Consensus 214 ~~~--~~----~lg~~~~~l~~l~~------------------------------------------------------- 232 (393)
+.. .. .+|+|.+++.+|+.
T Consensus 206 ta~~AD~~l~i~PGtD~al~lama~~ii~~~~~d~~Fv~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~ 285 (523)
T cd02757 206 TAAKADEWLPIKPGEDGALALAIAHVILTEGLWDKDFVGDFVDGKNYFKAGETVDEESFKEKSTEGLVKWWNLELKDYTP 285 (523)
T ss_pred hhHhcCEeeCCCCCcHHHHHHHHHHHHHHCCCccHHHHHHhccchhhhhcCCcCChhhccccchhHHHHHHHHHHhccCH
Confidence 633 23 34666654433210
Q ss_pred ------------cHHHHHHHHHhCCCCEEE-EcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccccccccCCCcH
Q psy14128 233 ------------GSHAFSKKLAAAKKPLIV-VGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHAF 299 (393)
Q Consensus 233 ------------g~~~~a~~l~~a~~~~ii-~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G~~~~gg~~~ 299 (393)
.+.++|+.|++++..+++ ++.+..++.+|.....++..|..+|| +++..++....
T Consensus 286 e~aa~~tGv~~~~I~~lA~~~a~~~~~~~~~~~~g~~~~~~G~~~~~ai~~L~~ltG-~ig~~GG~~~~----------- 353 (523)
T cd02757 286 EWAAKISGIPAETIERVAREFATAAPAAAAFTWRGATMQNRGSYNSMACHALNGLVG-SIDSKGGLCPN----------- 353 (523)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcCCcEEEecCccccccCChHHHHHHHHHHHHHhC-CCCCCCCCcCC-----------
Confidence 046678889888755444 57888888999999999999999999 67765532110
Q ss_pred HHHhhcccCcEEEEcCCCC-CCCChhhHH----------------------------------------------HHhhh
Q psy14128 300 SKKLAAAKKPLIVVGADML-SRSDGAAVL----------------------------------------------ALVQQ 332 (393)
Q Consensus 300 ~~~~~~~~~al~v~g~np~-~~p~~~~v~----------------------------------------------~~vq~ 332 (393)
.....+|++|++|.||+ ++||...++ ++++.
T Consensus 354 --~~~~~ik~~~~~~~Np~~~~pd~~~~~eal~~~~~~V~~d~~~teTa~~ADiVLP~~~~~E~~~~~~~~~~~~~~~~~ 431 (523)
T cd02757 354 --MGVPKIKVYFTYLDNPVFSNPDGMSWEEALAKIPFHVHLSPFMSETTYFADIVLPDGHHFERWDVMSQENNLHPWLSI 431 (523)
T ss_pred --CCCCCceEEEEccCCccccCCCHHHHHHHHHCCCeEEEEeCCcCchHhhCCEEecCCChhhhcCccccccCCcceeEE
Confidence 11237899999999999 899987755 44555
Q ss_pred hhhccCCCCCCCcchHHHHHHHHHHHhccc
Q psy14128 333 LAAKVTCESDVPCDWKVLNILQKAASQVAA 362 (393)
Q Consensus 333 ~~~av~~~g~~~~dw~i~~~l~~~a~~~g~ 362 (393)
..++++|+|++|+||+| +.++|+++|.
T Consensus 432 ~~~vi~P~ge~r~d~ei---~~~La~~l~~ 458 (523)
T cd02757 432 RQPVVKSLGEVREETEI---LIELAKKLDP 458 (523)
T ss_pred ecCccCCCcCCCCHHHH---HHHHHHHhCC
Confidence 66999999999999999 5666677763
No 46
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=99.94 E-value=6e-26 Score=246.22 Aligned_cols=296 Identities=14% Similarity=0.095 Sum_probs=209.5
Q ss_pred HHccC--chHHhhhhhcCCCEEEeC----CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcC-cc-------cHHHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVG----ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVG-SL-------ADAEA 125 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g----~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g-~~-------~t~E~ 125 (393)
|.+|. .++..+.+|+++||+|.| ++|++++|+||+..++++|.+. +||++++.++.+ +. ...|+
T Consensus 104 C~kG~~~~~~~y~pdRl~~Pl~R~g~rG~g~~~~iSWdEAl~~Ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~ 183 (814)
T PRK14990 104 CLRGRSMRRRVYNPDRLKYPMKRVGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTRSWPPG 183 (814)
T ss_pred ChhhHhHHHhhcChhhhCCCeEecccCCCCCeEEeCHHHHHHHHHHHHHHHHHhhCccceEEeecccccCcccccccccc
Confidence 45553 567788999999999985 6799999999999999999754 589999876432 22 13377
Q ss_pred HHHHHHHHHHhCCCCccccCCCCccchhhhhhhccc---CCCCccCccccCEEEEecCCcCccccH---HHHHHHHhhhc
Q psy14128 126 MVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPL---FNARIRKGYLT 199 (393)
Q Consensus 126 ~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~IL~iG~n~~~~~p~---l~~rlr~a~~~ 199 (393)
.|+++||++.+|.. .++....|.......+..+++ .+.++.|+++||+||+||+|+.+++|. +..+++++.++
T Consensus 184 ~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~ 262 (814)
T PRK14990 184 NTLVARLMNCCGGY-LNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQK 262 (814)
T ss_pred hHHHHHHHHhccCc-ccCCCCccHHHHhhhhhceeccCCCCCCHHHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHH
Confidence 88999999987642 112222222111122222222 355788999999999999999999874 55677777545
Q ss_pred CCceEEEEcCCCCccc---cccc----cCCCHHHHHHHH-----------------------------------------
Q psy14128 200 NELDVAYIGPKVDLRY---DYEH----LGESADLIKQLA----------------------------------------- 231 (393)
Q Consensus 200 ~gakiivi~p~~~~~~---~~~~----lg~~~~~l~~l~----------------------------------------- 231 (393)
+|+|||+|||+.+.+. ...| +|+|.+++.+|+
T Consensus 263 ~G~klivIDPr~t~taa~~AD~~l~irPGTD~al~lam~~~ii~e~l~D~~fv~~~~~g~d~~~~~~~~~~~~~~~~~~~ 342 (814)
T PRK14990 263 SNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVNGLAYVMITENLVDQPFLDKYCVGYDEKTLPASAPKNGHYKAYIL 342 (814)
T ss_pred CCCeEEEECCCCCCcccccCCeEECCCCCcHHHHHHHHHHHHHHcCcccHHHHHhhccccCcccccccccccccHHHHhc
Confidence 7999999999877663 2333 466655432221
Q ss_pred ----------------------ccHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccc
Q psy14128 232 ----------------------SGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLI 289 (393)
Q Consensus 232 ----------------------~g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~ 289 (393)
+.++++|+.|+++++++|++|.+..++.+|.....++..|+.+|| +++.++++....
T Consensus 343 ~~~~dg~~~tpe~aa~itGV~a~~I~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~rai~~L~aLtG-nig~~Gg~~g~~ 421 (814)
T PRK14990 343 GEGPDGVAKTPEWASQITGVPADKIIKLAREIGSTKPAFISQGWGPQRHANGEIATRAISMLAILTG-NVGINGGNSGAR 421 (814)
T ss_pred ccccCCCcCCHHHHHhhHCcCHHHHHHHHHHHHhcCCcEEEcchhHHHhhhhHHHHHHHHHHHHHhC-CCCCCCCCCCCC
Confidence 015778999999999999999999999999999999999999999 688777653211
Q ss_pred c-c-ccc-------------------------CCCcHHHHhh---------cccCcEEEEcCCCC--CCCChhhHH----
Q psy14128 290 K-Q-LAS-------------------------GSHAFSKKLA---------AAKKPLIVVGADML--SRSDGAAVL---- 327 (393)
Q Consensus 290 G-~-~~~-------------------------gg~~~~~~~~---------~~~~al~v~g~np~--~~p~~~~v~---- 327 (393)
. . ... .|..+.++++ ..+|++|++|.||. +.||.+.++
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~l~~~~~Np~~~~~p~~~~~~~al~ 501 (814)
T PRK14990 422 EGSYSLPFVRMPTLENPIQTSISMFMWTDAIERGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQ 501 (814)
T ss_pred CCCCCCCcccCCCCCCCccceecHHHHHHHHHcCCccccccccccCCccCCCCcEEEEEcCCCCeeecchHHHHHHHHhc
Confidence 0 0 000 0111111221 24899999999986 578865433
Q ss_pred ----------------------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhcc
Q psy14128 328 ----------------------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVA 361 (393)
Q Consensus 328 ----------------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g 361 (393)
.++|...++++|+|++|+||+| +.++|.++|
T Consensus 502 ~~~~ldf~Vv~D~~~t~Ta~~ADiVLPa~t~~E~~d~~~~~~~~~~~~v~~~~~~i~P~gesk~d~~I---~~~LA~rlG 578 (814)
T PRK14990 502 DDKKCELIVVIDCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEM---TSELAKRLG 578 (814)
T ss_pred ccCCCCEEEEecCccCchhhhhheeccCCChHhcCccccccccCCCceEEeeccccCCccccCCHHHH---HHHHHHHhC
Confidence 2477889999999999999999 567777777
Q ss_pred c
Q psy14128 362 A 362 (393)
Q Consensus 362 ~ 362 (393)
.
T Consensus 579 ~ 579 (814)
T PRK14990 579 V 579 (814)
T ss_pred C
Confidence 4
No 47
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=99.93 E-value=3.9e-25 Score=222.49 Aligned_cols=269 Identities=18% Similarity=0.123 Sum_probs=192.4
Q ss_pred hhcCCCEEEeCCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchh
Q psy14128 74 SAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAG 153 (393)
Q Consensus 74 ~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~ 153 (393)
+|+++||+|. ++.+|++|+..++++|.+... ..++.++..++|+.+.+++|++.+|+ ++|+....|..+..
T Consensus 42 dRl~~Pl~r~----~~isWdeAl~~ia~~L~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~ 112 (415)
T cd02761 42 RRITTPRIDG----KPVSLEEAIEKAAEILKEAKR----PLFYGLGTTVCEAQRAGIELAEKLGA-IIDHAASVCHGPNL 112 (415)
T ss_pred cccCCCeecC----CCCCcHHHHHHHHHHHHhhcC----CEEEEcccchHHHHHHHHHHHHHHCC-CccccccccccchH
Confidence 8999999974 899999999999999976532 23455556677888999999999997 66665555654333
Q ss_pred hhhhhcccCCCCccCcc-ccCEEEEecCCcCccccHHHHH--------HHHhhhcCCceEEEEcCCCCcccc--cc----
Q psy14128 154 TDLRANYLLNNKIAGAE-EADLILLIGTNPRFEAPLFNAR--------IRKGYLTNELDVAYIGPKVDLRYD--YE---- 218 (393)
Q Consensus 154 ~~~~~~~~~~~~~~~ie-~AD~IL~iG~n~~~~~p~l~~r--------lr~a~~~~gakiivi~p~~~~~~~--~~---- 218 (393)
..+.....++.++.|++ +||+||+||+|+.+++|.+..| .|++. ++|+||++|||+.+.+.. ..
T Consensus 113 ~~~~~~g~~~~~~~di~~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~-~~g~kli~idp~~t~ta~~Ad~~l~i 191 (415)
T cd02761 113 LALQDSGWPTTTLGEVKNRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGG-REDRTLIVVDPRKSDTAKLADIHLQI 191 (415)
T ss_pred HHHHhCCCccccHHHHHhcCCEEEEEcCCccccccHHhhhhhhhhhhhccccC-CCCCEEEEEcCCCcchhhhcceEEec
Confidence 33332223456788885 8999999999999999988733 12222 478999999997776633 23
Q ss_pred ccCCCHHHHHHHHc------------------cHHHHHHHHHhCCCCEEEEcCccccccCHHH----HHHHHHHHHHHhC
Q psy14128 219 HLGESADLIKQLAS------------------GSHAFSKKLAAAKKPLIVVGADMLSRSDGAA----VLALVQQLAAKVT 276 (393)
Q Consensus 219 ~lg~~~~~l~~l~~------------------g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~----~~~~~~~l~~~tg 276 (393)
.+|++..++..|.+ .++++++.|+++++++|++|+++.++.++.. +...+..|...++
T Consensus 192 ~pgtd~~l~~~l~~~l~~~~~~~~~~~gv~~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~li~~l~~~~~ 271 (415)
T cd02761 192 DPGSDYELLAALRALLRGAGLVPDEVAGIPAETILELAERLKNAKFGVIFWGLGLLPSRGAHRNIEAAIRLVKALNEYTK 271 (415)
T ss_pred CCCCcHHHHHHHHHHHhccccccccccCcCHHHHHHHHHHHHhCCceEEEEeccccccCCccHHHHHHHHHHHHhCcccc
Confidence 35788776655432 1578999999999999999999998765544 3444444444455
Q ss_pred CCcccCCCccccccccccC----------------------CCcHHHHhh-cccCcEEEEcCCCC-CCCChhh-------
Q psy14128 277 CESDHLGESADLIKQLASG----------------------SHAFSKKLA-AAKKPLIVVGADML-SRSDGAA------- 325 (393)
Q Consensus 277 ~~~~~~~~~~n~~G~~~~g----------------------g~~~~~~~~-~~~~al~v~g~np~-~~p~~~~------- 325 (393)
+++..+++..|.+|...++ +.++.++++ +.+|++|++|.||+ ++|+...
T Consensus 272 ~~~~~l~g~~n~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~g~ik~l~~~g~np~~~~p~~~~~al~~~~ 351 (415)
T cd02761 272 FALLPLRGHYNVRGFNQVLTWLTGYPFRVDFSRGYPRYNPGEFTAVDLLAEGEADALLIIASDPPAHFPQSAVKHLAEIP 351 (415)
T ss_pred eeeeeccCcCCccCcccccccccCCCcceecccCCCCCCCchhhHHHHHhcCCCCEEEEEcCCCcccCCHHHHHhhccCC
Confidence 5666777666666553221 234556664 57999999999998 8888310
Q ss_pred HH----------------------------------HHhhhhhhccCCCCCCCcchHHHHHHH
Q psy14128 326 VL----------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQ 354 (393)
Q Consensus 326 v~----------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~ 354 (393)
++ +|+|.++++++| +.++||+||..|.
T Consensus 352 ~Vv~d~~~teta~~ADvvLP~a~~~~E~~Gt~~n~eg~~q~~~~~~~~--~~~~~~~il~~l~ 412 (415)
T cd02761 352 VIVIDPPPTPTTRVADVVIPVAIPGIEAGGTAYRMDGVVVLPLKAVET--ERLPDEEILKQLL 412 (415)
T ss_pred EEEECCCCCcccccCcEEEeCCccccccCceEEEeCCceEeeeccCCC--CCCCHHHHHHHHH
Confidence 01 999999999976 5699999965554
No 48
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=99.93 E-value=4.8e-25 Score=239.10 Aligned_cols=295 Identities=16% Similarity=0.171 Sum_probs=197.0
Q ss_pred HccCchHHhhhhhcCCCEEEe---------------CCceeeeChHHHHHHHHHHHHHh--ccCCCceEE-EcCcccHHH
Q psy14128 63 ASGSHPFSKKLSAAKKPLIVV---------------GADMLSRSDGAAVLALVQQLAAK--VTCESDVAG-VVGSLADAE 124 (393)
Q Consensus 63 ~~~~~~~~~~l~r~~~PlI~~---------------g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~-l~g~~~t~E 124 (393)
.+|..++..+.+|+++||+|+ +++|+++||+||++.+|++|.+. +||+++|+. ..+...+.+
T Consensus 75 ~~g~~~~~y~pdRl~~PlkR~~~~~~~~~~~~g~RG~g~f~rISWDEAld~IA~kl~~i~~~yG~~si~~g~~~~~~~~~ 154 (822)
T TIGR02164 75 INGIRGMVYNPSRVRYPMVRLDWLKKRHKSNTHQRGDNRFVRVTWDEALDLFYEELERVQKQYGPSALHAGQTGWRSTGQ 154 (822)
T ss_pred hhcchhhccCchhccCCceecchhhccCCCCcccCCCCCEEEecHHHHHHHHHHHHHHHHHhhCcceeEecccccccCCC
Confidence 345567899999999999997 35799999999999999999764 589999875 322222222
Q ss_pred HHHHHHHHHHHhCC--CCccccCCCCccchhhhhhhc------ccCCCCccC-ccccCEEEEecCCcCcc---------c
Q psy14128 125 AMVALKDLLNKLGS--EDLYTEYAFPLEGAGTDLRAN------YLLNNKIAG-AEEADLILLIGTNPRFE---------A 186 (393)
Q Consensus 125 ~~~~~~k~~~~lGt--~nid~~~~~~~~~~~~~~~~~------~~~~~~~~~-ie~AD~IL~iG~n~~~~---------~ 186 (393)
..+...+|++.+|+ ++++....+|........... ++...+..+ +++||+||+||+|+.++ |
T Consensus 155 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~a~~il~wG~Np~~s~~~~~~~~~~ 234 (822)
T TIGR02164 155 FHSCTSHMQRAVGMHGNYVKKIGDYSTGAGQTILPYVLGSTEVYAQGTSWPLILENSDTIVLWANDPVKNLQVGWNCETH 234 (822)
T ss_pred CCchHHHHHHHhcccCCCcCCCCCccHHHHhhhcCceecchhhccCCCChHHHHHhCCEEEEECCCHHHhcCcccccCCC
Confidence 22333467777775 334332233432111111111 111223333 69999999999999765 4
Q ss_pred cHHH--HHHHHhhhcCCceEEEEcCCCCcccc---ccc----cCCCHHHHHHHHc------------------c------
Q psy14128 187 PLFN--ARIRKGYLTNELDVAYIGPKVDLRYD---YEH----LGESADLIKQLAS------------------G------ 233 (393)
Q Consensus 187 p~l~--~rlr~a~~~~gakiivi~p~~~~~~~---~~~----lg~~~~~l~~l~~------------------g------ 233 (393)
|.+. .++|++.+++|+|||||||+.+.|+. ..| +|+|.+++..|+. |
T Consensus 235 ~~~~~~~~~~~~~~~ggaklIvIDPr~t~tA~~~ad~~l~irPGTD~AL~lam~~vii~e~l~D~~Fi~~~t~Gfe~~~~ 314 (822)
T TIGR02164 235 ESFAYLAQLKEKVAAGEINVISIDPVVTKTQAYLGCEHLYVNPQTDVALMLALAHTLYSENLYDKKFIEGYCLGFEEFLP 314 (822)
T ss_pred chHHHHHHHHHHhhCCCceEEEECCCCCchhhhccCeEeccCCCcHHHHHHHHHHHHHHCCCccHHHHHHhcccHHHHHH
Confidence 6543 23455543335999999998877733 334 4777765544321 0
Q ss_pred --------------------------HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccc
Q psy14128 234 --------------------------SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESAD 287 (393)
Q Consensus 234 --------------------------~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n 287 (393)
++++|+.|++ +++.+++|.+..++.++.....++.+|+.+|| +++.++++..
T Consensus 315 ~l~~~~~g~~~tpe~aa~itGV~ae~I~~lA~~~a~-~~~~~~~g~g~~~~~~g~~~~rai~~L~altG-nig~pGgg~~ 392 (822)
T TIGR02164 315 YVLGSKDGVAKTPEWAAKICGVEAEVIRDLARMLVK-GRTQLIFGWCIQRQQHGEQPYWMGAVLAAMIG-QIGLPGGGIS 392 (822)
T ss_pred HhccccCCCcCCHHHHHHHHCcCHHHHHHHHHHHHh-cCCEEEEeccchhhhcchHHHHHHHHHHHHhC-cCCCCCCccc
Confidence 5778999988 45667788888877888899999999999999 7877776532
Q ss_pred ------ccccc-----ccC--------------------CC----c---HHHH-hh--------------cccCcEEEEc
Q psy14128 288 ------LIKQL-----ASG--------------------SH----A---FSKK-LA--------------AAKKPLIVVG 314 (393)
Q Consensus 288 ------~~G~~-----~~g--------------------g~----~---~~~~-~~--------------~~~~al~v~g 314 (393)
..|.. ..+ +. . +.+. +. ..+|++|++|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~g~~~~~~~~~~~~~~ik~l~v~g 472 (822)
T TIGR02164 393 YGHHYSSIGVPSSGAAAPGAFPRNLDEGQKPKFDNSDFKGYSSTIPVARWIDAILEPGKTIDHNGSKVTYPPIKMMIFSG 472 (822)
T ss_pred ccccccCCCCcccccccCcCccccCCcccccccccccccCccccccHhHHHHHhcCCCceeccCCcccCCCCeEEEEEcC
Confidence 11100 000 00 0 1111 11 1389999999
Q ss_pred CCCC-CCCChhhHH----------------------------------------------HHhhhhhhccCCCCCCCcch
Q psy14128 315 ADML-SRSDGAAVL----------------------------------------------ALVQQLAAKVTCESDVPCDW 347 (393)
Q Consensus 315 ~np~-~~p~~~~v~----------------------------------------------~~vq~~~~av~~~g~~~~dw 347 (393)
.||+ +.||.+.++ +++|..+++++|+|++|+||
T Consensus 473 ~Np~~~~p~~~~~~~al~kldf~V~~D~~~teTa~~ADiVLPaat~~E~~d~~~~g~~~~~~~~~~~~~i~P~geak~d~ 552 (822)
T TIGR02164 473 CNPWHHHQDRNRMKQAFQKLETVVTIDVSWTATCRFSDIVLPACTQFERNDIDVYGSYSNRGIIAMQKLVDPLFDSRSDF 552 (822)
T ss_pred CCHHhcCcCHHHHHHHHhcCCEEEEecCcCChhhhhCCEEecCCcccccccccccccccCcccceeccccCCcccccCHH
Confidence 9998 999987765 36888999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy14128 348 KVLNILQKAASQVAA 362 (393)
Q Consensus 348 ~i~~~l~~~a~~~g~ 362 (393)
+| +.++|.+||.
T Consensus 553 eI---~~~LA~rlG~ 564 (822)
T TIGR02164 553 EI---FTELCRRFGK 564 (822)
T ss_pred HH---HHHHHHHhCC
Confidence 99 5777777774
No 49
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=99.92 E-value=9.8e-25 Score=236.75 Aligned_cols=294 Identities=16% Similarity=0.156 Sum_probs=194.8
Q ss_pred ccCchHHhhhhhcCCCEEEe---------------CCceeeeChHHHHHHHHHHHHHh--ccCCCceEEE-cCcccHHHH
Q psy14128 64 SGSHPFSKKLSAAKKPLIVV---------------GADMLSRSDGAAVLALVQQLAAK--VTCESDVAGV-VGSLADAEA 125 (393)
Q Consensus 64 ~~~~~~~~~l~r~~~PlI~~---------------g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l-~g~~~t~E~ 125 (393)
.+-.++..+.+|+++||+|+ +++|+++||+|||+.+|++|.+. +||+++|... .+...+...
T Consensus 79 ~~~~~~~y~pdRl~~PlkR~~~~~~~~~~~~g~RG~g~f~~ISWDEAld~IA~kl~~i~~~~G~~ai~~g~~~~~~~g~~ 158 (825)
T PRK15102 79 NGIKGHVYNPSRIRYPMVRLDWLRKRHKSDTSQRGDNRFVRVSWDEALDLFYEELERVQKTYGPSALHTGQTGWQSTGQF 158 (825)
T ss_pred hchhhhccChhhccCCceechhhhccCCCCcccCCCCcEEEecHHHHHHHHHHHHHHHHHhhCcHhhcccccccccCCcc
Confidence 34456888999999999997 37899999999999999999754 5899997321 111111111
Q ss_pred HHHHHHHHHHhCC--CCccccCCCCccchhhhhhhcc------cCCCCc-cCccccCEEEEecCCcCcc---------cc
Q psy14128 126 MVALKDLLNKLGS--EDLYTEYAFPLEGAGTDLRANY------LLNNKI-AGAEEADLILLIGTNPRFE---------AP 187 (393)
Q Consensus 126 ~~~~~k~~~~lGt--~nid~~~~~~~~~~~~~~~~~~------~~~~~~-~~ie~AD~IL~iG~n~~~~---------~p 187 (393)
.....+|++.+|+ +.++....+|..........++ ....+. .++++||+||+||+|+.++ +|
T Consensus 159 ~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~a~~ii~wG~Np~~s~~~~~~~~~~p 238 (825)
T PRK15102 159 HSATGHMQRAIGMHGNSVGTVGDYSTGAGQVILPYVLGSTEVYEQGTSWPLILENSKTIVLWGSDPVKNLQVGWNCETHE 238 (825)
T ss_pred CchHHHHHHHHhhcCCCcCCCCCcCHHHHhhhhheEecchhhccCCCCcHHHHHhCCEEEEECCChHHhccCccccCCCc
Confidence 1223356677774 2232222344332111111111 112223 3479999999999999765 45
Q ss_pred HHH--HHHHHhhhcCCceEEEEcCCCCcccc---ccc----cCCCHHHHHHHHc--------------------------
Q psy14128 188 LFN--ARIRKGYLTNELDVAYIGPKVDLRYD---YEH----LGESADLIKQLAS-------------------------- 232 (393)
Q Consensus 188 ~l~--~rlr~a~~~~gakiivi~p~~~~~~~---~~~----lg~~~~~l~~l~~-------------------------- 232 (393)
... .++|++.+++|+|||||||+.+.++. ..| +|+|.+++..|+.
T Consensus 239 ~~~~~~~~~~~~~~~gaklIvIDPr~t~tA~~a~~~~l~irPGTD~AL~lam~~~ii~e~l~D~~Fv~~~t~Gfd~~~~~ 318 (825)
T PRK15102 239 SYAYLAQLKEKVAKGEINVISIDPVVTKTQNYLGCEHLYVNPQTDVPLMLALAHTLYSENLYDKKFIDNYCLGFEQFLPY 318 (825)
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCCCCchhhhccCceecccCCcHHHHHHHHHHHHHHCCcccHHHHHHHccCHHHHHHH
Confidence 433 34565543347999999998877743 234 4777765544321
Q ss_pred ------------------------cHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccc-
Q psy14128 233 ------------------------GSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESAD- 287 (393)
Q Consensus 233 ------------------------g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n- 287 (393)
.++++|+.|+++ ++.|++|.+..++.++.....++.+|+.+|| +++..+.+.+
T Consensus 319 l~g~~dg~~~tpe~aa~itGV~ae~I~~lA~~~a~~-~~~i~~g~g~~~~~~g~~~~rai~~L~altG-nig~pGgg~~~ 396 (825)
T PRK15102 319 LLGEKDGVPKTPEWAEKICGIDAETIRELARQMAKG-RTQIIAGWCIQRQQHGEQPYWMGAVLAAMLG-QIGLPGGGISY 396 (825)
T ss_pred hcccccCCcCCHHHHHHHHCcCHHHHHHHHHHHHhc-CCEEEEeechhhhhhhHHHHHHHHHHHHHhc-cCCCCCCcccc
Confidence 057788999884 5777888888777888889999999999999 7887776532
Q ss_pred -----ccccc-----ccC--------------------C----Cc---HHH-Hhh--------------cccCcEEEEcC
Q psy14128 288 -----LIKQL-----ASG--------------------S----HA---FSK-KLA--------------AAKKPLIVVGA 315 (393)
Q Consensus 288 -----~~G~~-----~~g--------------------g----~~---~~~-~~~--------------~~~~al~v~g~ 315 (393)
..|.. ..+ | .. +.+ ++. ..+|++|++|.
T Consensus 397 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~g~~~~~~g~~~~~~~ik~l~v~g~ 476 (825)
T PRK15102 397 GHHYSGIGVPSSGGAIPGGFPGNLDTGQKPKHDNSDYKGYSSTIPVARFIDAILEPGKTINWNGKKVTLPPLKMMIFSGT 476 (825)
T ss_pred ccccCCCCCCCcccccccCccccCCcccCccccccccccccccccHHHHHHHHhcCCceeccCCCcccCCCeEEEEECCC
Confidence 11110 000 0 01 111 111 14899999999
Q ss_pred CCC-CCCChhhHH----------------------------------------------HHhhhhhhccCCCCCCCcchH
Q psy14128 316 DML-SRSDGAAVL----------------------------------------------ALVQQLAAKVTCESDVPCDWK 348 (393)
Q Consensus 316 np~-~~p~~~~v~----------------------------------------------~~vq~~~~av~~~g~~~~dw~ 348 (393)
||+ ++||.+.++ +++|..+++++|+|++|+||+
T Consensus 477 Np~~s~p~~~~~~~al~~ldf~Vv~D~~~teTa~~ADiVLPaa~~~E~~d~~~~g~~~~~~~~~~~~~v~P~gear~d~~ 556 (825)
T PRK15102 477 NPWHRHQDRNRMKEAFRKLETVVAIDNQWTATCRFADIVLPACTQFERNDIDQYGSYSNRGIIAMKKVVEPLFESRSDFD 556 (825)
T ss_pred CHHHcCcCHHHHHHHhcCCCEEEEecCccCchHhhCCEEeecCcccccCcccccccccccceeeeeeccCCcccccCHHH
Confidence 998 999987765 368889999999999999999
Q ss_pred HHHHHHHHHHhccc
Q psy14128 349 VLNILQKAASQVAA 362 (393)
Q Consensus 349 i~~~l~~~a~~~g~ 362 (393)
| +.++|.+||.
T Consensus 557 I---~~~LA~rlG~ 567 (825)
T PRK15102 557 I---FRELCRRFGR 567 (825)
T ss_pred H---HHHHHHHhCC
Confidence 9 6777777774
No 50
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=99.92 E-value=8.5e-24 Score=225.76 Aligned_cols=222 Identities=10% Similarity=0.034 Sum_probs=157.2
Q ss_pred HHccC--chHHhhhhhcCCCEEEeC--------CceeeeChHHHHHHHHHHHHHhc-cC--CC----c-eEEEcCcccHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVG--------ADMLSRSDGAAVLALVQQLAAKV-TC--ES----D-VAGVVGSLADA 123 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g--------~~~~~~~~~~al~~~a~~l~~~~-~g--~~----s-v~~l~g~~~t~ 123 (393)
+.+|. .++..+.+|+++||+|.| ++|+++||++|+..++++|.+.. .+ ++ + ++.+.+++.++
T Consensus 43 C~KG~~~~~~ly~pdRL~~PLkR~g~k~G~~~dg~~~~ISWDEAld~IA~kL~~i~~~g~~~~~g~~~~~~~~~~~~~~~ 122 (760)
T cd02760 43 CVKAYGLVQKTYNPNRVLQPMKRTNPKKGRNEDPGFVPISWDEALDLVAAKLRRVREKGLLDEKGLPRLAATFGHGGTPA 122 (760)
T ss_pred ChhhhhhHhhhcCchhhcCCeeccCCCCCCcCCCCeeEeCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEecCCCchH
Confidence 44442 567888999999999984 58999999999999999997643 23 22 2 34466677777
Q ss_pred HHHHHHHHHHHHhCCCCccccCC--CCccchhhhhhhccc-CCCCccCccccCEEEEecCCcCccc-cHHHHHHHHhhhc
Q psy14128 124 EAMVALKDLLNKLGSEDLYTEYA--FPLEGAGTDLRANYL-LNNKIAGAEEADLILLIGTNPRFEA-PLFNARIRKGYLT 199 (393)
Q Consensus 124 E~~~~~~k~~~~lGt~nid~~~~--~~~~~~~~~~~~~~~-~~~~~~~ie~AD~IL~iG~n~~~~~-p~l~~rlr~a~~~ 199 (393)
+..+.+++|++.+||+|+++..+ .|.......+..... ....+.|+++||+||+||+|+..++ |+...++.++. +
T Consensus 123 ~~~~~~~~f~~~~Gs~n~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar-~ 201 (760)
T cd02760 123 MYMGTFPAFLAAWGPIDFSFGSGQGVKCVHSEHLYGEFWHRAFTVAADTPLANYVISFGSNVEASGGPCAVTRHADAR-V 201 (760)
T ss_pred HHHHHHHHHHHHhCCCcccccCCccccccchhhhhcccccCCCCccchHhcCCEEEEECCCchHhcCcHHHHHHHHHH-H
Confidence 77788899999999999875432 122111111111111 1124789999999999999998776 44555566654 5
Q ss_pred CCceEEEEcCCCCcccc--cc----ccCCCHHHHHHHH-----c------------------------------------
Q psy14128 200 NELDVAYIGPKVDLRYD--YE----HLGESADLIKQLA-----S------------------------------------ 232 (393)
Q Consensus 200 ~gakiivi~p~~~~~~~--~~----~lg~~~~~l~~l~-----~------------------------------------ 232 (393)
+|+|||||||+.+.+.. .. .+|+|.+++..|+ +
T Consensus 202 ~GaKlIvVDPr~t~ta~~AD~wlpirPGTD~AL~lam~~~Ii~e~~~~lyD~~Fl~~~Tn~p~Lv~~d~~~lr~~~~~~~ 281 (760)
T cd02760 202 RGYKRVQVEPHLSVTGACSAEWVPIRPKTDPAFMFAMIHVMVHEQGLGKLDVPFLRDRTSSPYLVGPDGLYLRDAATGKP 281 (760)
T ss_pred cCCeEEEEcCCCCcchhhcCeEeCcCCCcHHHHHHHHHHHHHhccccccchHHHHHHhCCCceEEecCCceeeccccCCe
Confidence 89999999998776633 23 3455544321110 0
Q ss_pred ----------------------------------------------------------------------------cHHH
Q psy14128 233 ----------------------------------------------------------------------------GSHA 236 (393)
Q Consensus 233 ----------------------------------------------------------------------------g~~~ 236 (393)
-+++
T Consensus 282 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~t~F~~l~e~~~~yTpE~aaeItGVpa~~Ir~ 361 (760)
T cd02760 282 LVWDERSGRAVPFDTRGAVPAVAGDFAVDGAVSVDADDETAIHQGVEGTTAFTMLVEHMRKYTPEWAESICDVPAATIRR 361 (760)
T ss_pred EEEECCCCccccccccccccccccccccccceeecccccccccCCcccccHHHHHHHHHhcCCHHHHHHHHCcCHHHHHH
Confidence 0677
Q ss_pred HHHHHHhC----------------CCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCc
Q psy14128 237 FSKKLAAA----------------KKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGES 285 (393)
Q Consensus 237 ~a~~l~~a----------------~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~ 285 (393)
+|+.++++ +.++|++|.++.++.++.....++..|+.+|| +++.++++
T Consensus 362 lAr~~a~~a~~g~~~~~~g~~~~~~p~~i~~g~G~~~~~ng~~~~rAi~~L~aLtG-nig~pGG~ 425 (760)
T cd02760 362 IAREFLENASIGSTIEVDGVTLPYRPVAVTLGKSVNNGWGAFECCWARTLLATLVG-ALEVPGGT 425 (760)
T ss_pred HHHHHHhccccCcccccccccccCCceEEEeCcccccccccHHHHHHHHHHHHHhC-CCCCCCcc
Confidence 89999887 35678899999999999999999999999999 67766664
No 51
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=99.89 E-value=5.8e-22 Score=217.48 Aligned_cols=222 Identities=14% Similarity=0.107 Sum_probs=161.7
Q ss_pred HHccC--chHHhhhhhcCCCEEEeC----CceeeeChHHHHHHHHH-----------HHHHh------------ccCCCc
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVG----ADMLSRSDGAAVLALVQ-----------QLAAK------------VTCESD 112 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g----~~~~~~~~~~al~~~a~-----------~l~~~------------~~g~~s 112 (393)
|.+|. .+...+..|+++||+|.| ++|+++||++||..+++ +|.++ .||+++
T Consensus 142 C~KG~a~~~~~y~p~Rl~~PLkR~g~RGeg~w~~ISWdeAl~eIaegg~lf~e~~v~~L~~i~~~~~~id~~~p~~Gp~a 221 (1031)
T PRK14991 142 CARGNAMLEQLDSPYRVLQPLKRVGKRGSGKWQRISFEQLVEEVVEGGDLFGEGHVDGLRAIRDLDTPIDAKNPEYGPKA 221 (1031)
T ss_pred ccchhhhHhhhhCcccccCCeeccCCCCCCceeEccHHHHHHHHHhccccccchhHHHHHHHHhhhccccccchhhCcee
Confidence 45553 667889999999999985 47999999999999999 78654 589999
Q ss_pred eEEEcCcccHHHHHHHHHHHHH-HhCCCCccccCCCCccchhhhhhhcc----cCCCCccCccccCEEEEecCCcCcccc
Q psy14128 113 VAGVVGSLADAEAMVALKDLLN-KLGSEDLYTEYAFPLEGAGTDLRANY----LLNNKIAGAEEADLILLIGTNPRFEAP 187 (393)
Q Consensus 113 v~~l~g~~~t~E~~~~~~k~~~-~lGt~nid~~~~~~~~~~~~~~~~~~----~~~~~~~~ie~AD~IL~iG~n~~~~~p 187 (393)
+.++.+........+.+++|++ .+||+|++....+|..+...+....+ .......|++++|+||+||+||.+++.
T Consensus 222 ~~~~~~~~~~~g~~~~~~rf~~~~~Gt~n~~~~~~~C~~~~~~g~~~~~g~~~~~~~~~~D~~~a~~il~~G~Np~~s~~ 301 (1031)
T PRK14991 222 NQLLVTNASDEGRDAFIKRFAFNSFGTRNFGNHGSYCGLAYRAGSGALMGDLDKNPHVKPDWDNVEFALFIGTSPAQSGN 301 (1031)
T ss_pred EEEEEEecCCcchHHHHHHHHHHhcCCCCccCCCccchHHHHhhHHHhccCCCCCCCccchhhcCcEEEEeCcChhHhCC
Confidence 8765543223234556789985 69999998877788754322222221 223457799999999999999999875
Q ss_pred HH---HHHHHHhhhcCCceEEEEcCCCCccc------cccc----cCCCHHHHHHH------------------------
Q psy14128 188 LF---NARIRKGYLTNELDVAYIGPKVDLRY------DYEH----LGESADLIKQL------------------------ 230 (393)
Q Consensus 188 ~l---~~rlr~a~~~~gakiivi~p~~~~~~------~~~~----lg~~~~~l~~l------------------------ 230 (393)
.. ..++.++..+.|+|+|||||+.+.+. ...| +|+|.+++..+
T Consensus 302 ~~~~~~~~l~~ar~~gg~k~VVVDPr~t~ta~~~A~~Ad~wlpIrPGTD~ALalgmi~~Iie~~~yD~~fl~~~~~~a~~ 381 (1031)
T PRK14991 302 PFKRQARQLANARTRGNFEYVVVAPALPLSSSLAAGDNNRWLPIRPGTDSALAMGMIRWIIDNQRYNADYLAQPGVAAMQ 381 (1031)
T ss_pred chHHHHHHHHHHHHcCCCEEEEECCCCCCchhhhhhcCCEEeCCCCCcHHHHHHHHHHHHHHcCCcCHHHHhchhhhhhh
Confidence 43 33466665333489999999776532 2333 35554422111
Q ss_pred --------------------------------------------------------------------------------
Q psy14128 231 -------------------------------------------------------------------------------- 230 (393)
Q Consensus 231 -------------------------------------------------------------------------------- 230 (393)
T Consensus 382 ~~ge~~~Tna~~LV~~d~~~~~~g~~lr~~d~g~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~l~~~~~v~~~dG~ 461 (1031)
T PRK14991 382 AAGEASWTNATHLVIADPGHPRYGQFLRASDLGLPFEGEARGDGEDTLVVDAADGELVPATQAQPARLFVEQYVTLADGQ 461 (1031)
T ss_pred hccccccccCceEEEecCCCccccceeehhhcccccccccccCCCCCEEEECCCCcccccccccccccccceeEeccCCC
Confidence
Q ss_pred -----------Hc-------------------cHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 231 -----------AS-------------------GSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 231 -----------~~-------------------g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
.+ -++++|+.|+++++.+++++.+..++.+|.....++..|..+|| +++
T Consensus 462 ~v~v~~~f~~lke~~~~~Tpe~~a~i~GVp~e~I~~lAr~fa~~~~~~~~~~~G~~~~~nG~~~~~Ai~~L~aLtG-ni~ 540 (1031)
T PRK14991 462 RVRVKSSLQLLKEAARKLSLAEYSEQCGVPEAQIIALAEEFTSHGRKAAVISHGGTMSGNGFYNAWAIMMLNALIG-NLN 540 (1031)
T ss_pred eeeeeEHHHHHHHHHhhCCHHHHHHHHCcCHHHHHHHHHHHHhcCCceEEEecccceeccHHHHHHHHHHHHHHhC-CCC
Confidence 00 16789999999989999999999999999999999999999999 666
Q ss_pred cCCC
Q psy14128 281 HLGE 284 (393)
Q Consensus 281 ~~~~ 284 (393)
..++
T Consensus 541 ~~GG 544 (1031)
T PRK14991 541 LKGG 544 (1031)
T ss_pred CCCC
Confidence 6554
No 52
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=99.86 E-value=2.9e-22 Score=197.33 Aligned_cols=185 Identities=25% Similarity=0.333 Sum_probs=140.7
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCCcccchhhhcccHHHHHHHHccCchHHhhhhhcCCCE
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHPFSKKLSAAKKPL 80 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d~~~~~~~~g~~~~~l~~i~~~~~~~~~~l~r~~~Pl 80 (393)
||++|+||+||+|||.|+|++|+||||++++++++|.+||+..|++|++.++|..+..+.++++|+|+||+.|+.+++|+
T Consensus 146 ie~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~~~~~~~~~l~~~~~~l~~~l~g~~~~~~~L~~ak~p~ 225 (366)
T cd02774 146 LDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKFDTTYPSKHIGLSLNTLLKILEGKHLFCKQLKKSKKPL 225 (366)
T ss_pred HhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCccccCCcHHHHCcCHHHHHHHHhcchHHHHHHhcCCCCE
Confidence 58999999999999999999999999999878999999999779999999999999999999999999999999999999
Q ss_pred EEeCCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCC----------Cccc--cCCCC
Q psy14128 81 IVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSE----------DLYT--EYAFP 148 (393)
Q Consensus 81 I~~g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~----------nid~--~~~~~ 148 (393)
|++|..+..++...++...+.+|++.. .+.+.++... .+. +..+|.. .+-. .+. +
T Consensus 226 Ii~G~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~l~~~--an~--------a~~lG~~~~~~~~~~~~~~l~~~~~~-~ 292 (366)
T cd02774 226 IIIGSSFSLRKNYSFIISKLKNFSSNN--ENNFNFLNII--SNS--------LYYLGIKKFNSNNKKNLSNLYYIKET-N 292 (366)
T ss_pred EEEChHHhCCCCHHHHHHHHHHHHHhh--cCceEEeeHH--HHH--------HHhcCCCCccchhcccceEEEEcCCc-h
Confidence 999999999999999999999997653 1223322211 111 1112210 0000 000 0
Q ss_pred ccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhh
Q psy14128 149 LEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYL 198 (393)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~ 198 (393)
+.....+-..+|..++.....+.||+|||..++.|++++++|++.|.|..
T Consensus 293 ~~~l~~~~fviy~g~~~~~~a~~AdviLP~a~~~Ek~gt~vN~EGr~Q~~ 342 (366)
T cd02774 293 FQKFNKNNFVIYQGHHFLNLANNSNLILPSKTFFEKEALYLNLEGILQKT 342 (366)
T ss_pred hhcccCCCEEEEecccCccchhhCcEEecCCcccccCceEECCCCcceee
Confidence 00000111123444555666789999999999999999999999998865
No 53
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=99.84 E-value=2.2e-20 Score=198.72 Aligned_cols=194 Identities=15% Similarity=0.168 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcc--cCCCCccCcc
Q psy14128 93 GAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANY--LLNNKIAGAE 170 (393)
Q Consensus 93 ~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~--~~~~~~~~ie 170 (393)
+++++.+++.|++ .+++++ |+++||||+|++|||++.+||+|+|++.++|. ....++...+ .++++++||+
T Consensus 297 e~A~deA~e~lk~----~~aI~~--S~~~TNEE~YllqKLar~lgtnnvD~~aR~~~-~~~~~l~~~~G~~~t~sl~DI~ 369 (819)
T PRK08493 297 EKAFKEAVEAFKE----AKAIKF--NSFITNEEALILQRLKKKFGLKLINEEALKFQ-QFLKVFSEVSGKSYSANLEDIK 369 (819)
T ss_pred HHHHHHHHHHHhh----CCEEEe--cCCCCHHHHHHHHHHHHHhCCCCccchhhhhh-HHHHHHHHhcCCCCCCCHHHHh
Confidence 4444444444543 345554 88999999999999999999999999877642 2223332211 2567899999
Q ss_pred ccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcccc-----cc----ccCCCHHHHHHHHc---------
Q psy14128 171 EADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYD-----YE----HLGESADLIKQLAS--------- 232 (393)
Q Consensus 171 ~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~-----~~----~lg~~~~~l~~l~~--------- 232 (393)
+||+||+||+|+.++||+++.|+++|++++|++++++||+.+.+.. .+ .+|++.+.+..|+.
T Consensus 370 ~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~~~~~a~~~~~l~~~PGtd~all~~ll~~ii~e~~id 449 (819)
T PRK08493 370 TSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFFCITHEVGAEEIILYFLLKKFLEEEAIL 449 (819)
T ss_pred hCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchhhhhhhhcceEeecCCCcHHHHHHHHHHHHHHcccch
Confidence 9999999999999999999999999876689999999997654411 12 34555554333210
Q ss_pred ---------------------------------------------------------------c-----HHHHHHHHHhC
Q psy14128 233 ---------------------------------------------------------------G-----SHAFSKKLAAA 244 (393)
Q Consensus 233 ---------------------------------------------------------------g-----~~~~a~~l~~a 244 (393)
| +.++++.|+++
T Consensus 450 ~~~~~F~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~ee~~~~v~~~v~~~~~~~~~~~a~~~Gv~~e~i~~lA~~~a~a 529 (819)
T PRK08493 450 KSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEELGINEETYEKLEALLAKK 529 (819)
T ss_pred hhhhhHHhhhccccccccccccccccccccccccccHHHHHHHhhhhhcccccCCHHHHHHHhCcCHHHHHHHHHHHhhC
Confidence 1 35689999999
Q ss_pred CCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccccccc
Q psy14128 245 KKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLA 293 (393)
Q Consensus 245 ~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G~~~ 293 (393)
++++|+||+|++||+++..+.....+|...++.++..+++..|++|..+
T Consensus 530 ~~~~ii~G~gi~qh~~g~NLA~LtG~Igk~s~~~v~~~p~~~N~~G~~~ 578 (819)
T PRK08493 530 NNFTLVVGEDLYAHKNAKNLAKLLGLIQKYTAFKVILIPPSTNTLGVAL 578 (819)
T ss_pred CCeEEEEecChhhCccHHHHHHHHHhHhhhcCceEEeeCCCccHHHHHH
Confidence 9999999999999999988888888888877777899999999999764
No 54
>KOG2282|consensus
Probab=99.81 E-value=3e-20 Score=180.96 Aligned_cols=194 Identities=45% Similarity=0.618 Sum_probs=145.7
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCCcccchhhhcccHHHHHHHHccCchHHhhhhhcCCCE
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHPFSKKLSAAKKPL 80 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d~~~~~~~~g~~~~~l~~i~~~~~~~~~~l~r~~~Pl 80 (393)
+|++|++|+||+|||+|+|++|+||||.|+++..+|+.||+..||+|.++|||..++.+++|++|.|+|++.++.+++|+
T Consensus 393 ~e~adavllVgtnpr~eap~~narirks~~~~~~qv~~Ig~~aDl~y~~~~lga~~~i~~~Ia~g~h~fak~l~~ak~p~ 472 (708)
T KOG2282|consen 393 VEEADAVLLVGTNPRFEAPLVNARIRKSWLHNDLQVALIGPPVDLTYDYDHLGASAKILKDIASGSHPFSKVLKEAKKPA 472 (708)
T ss_pred hcccceeeeecCCccccccccchhhheeeeeccceeeeecCCcceeeeeccCCCcHHHHHHHHcCccHHHHHhccCCCce
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCceeeeChHHHHHHHHHHHHHhc-cCCCce------------EEE-cCcccHHHHHH-HHHHHHHHhCCCCccccC
Q psy14128 81 IVVGADMLSRSDGAAVLALVQQLAAKV-TCESDV------------AGV-VGSLADAEAMV-ALKDLLNKLGSEDLYTEY 145 (393)
Q Consensus 81 I~~g~~~~~~~~~~al~~~a~~l~~~~-~g~~sv------------~~l-~g~~~t~E~~~-~~~k~~~~lGt~nid~~~ 145 (393)
|++|.+.....+.+|++.....++++. ..++-. +.+ .|.....+... ...|+...||.+--+...
T Consensus 473 iIvga~~l~r~dgaAil~~v~qia~kL~~~~~w~~~nvL~~~a~q~~aLd~gyk~ga~~~~k~~~KVlylL~Ad~g~vt~ 552 (708)
T KOG2282|consen 473 IIVGASALQRNDGAAILAAVSSIAQKLRMTPDWKVLNVLQRIAAQVGALDVGYKAGVAAIRKNPPKVLFLLGADAGKVTR 552 (708)
T ss_pred EEEcchhhcccchhHHHHHHHHHHHHhccCCcceeehHHHHhhhhhhhccccchhhhHHHhcCCceEEEEeccCCCcchh
Confidence 999999999999999998888776542 223221 111 01111111100 011222223321111000
Q ss_pred CCCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhh
Q psy14128 146 AFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYL 198 (393)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~ 198 (393)
.....+.+..|..++......-||++|+...+++.++.++|.+.|-+++
T Consensus 553 ----~~lPkd~fvvyqghhgD~ga~~AdvvlpgaaytekeGtyvntegr~Qqt 601 (708)
T KOG2282|consen 553 ----QDLPKDCFVVYQGHHGDVGAPIADVVLPGAAYTEKEGTYVNTEGRAQQT 601 (708)
T ss_pred ----hcCChhheEEeeeeecccccccceeecceeeEecccceeecccCccccc
Confidence 0001333445666777788899999999999999999999999987765
No 55
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=99.78 E-value=1.4e-17 Score=180.30 Aligned_cols=150 Identities=11% Similarity=-0.053 Sum_probs=109.6
Q ss_pred HHccC--chHHhhhhhcCCCEEEeC--------------------------------------CceeeeChHHHHHHHHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVG--------------------------------------ADMLSRSDGAAVLALVQ 101 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g--------------------------------------~~~~~~~~~~al~~~a~ 101 (393)
|.+|. .++..+.+|++.||+|.+ +.|++++|+||++.+|+
T Consensus 92 C~KG~s~~~~vYsPdRLkyPmkR~~~l~~~~~a~~~~~dpv~aw~~i~~~~~k~~~y~g~RG~G~fvRISWDEAldlIAa 171 (1235)
T TIGR01580 92 CPRGASYSWYIYSANRLKYPMMRKRLMKLWREAKQTHSDPVEAWASIVENADKAKSYKQARGRGGFVRSSWQEVNELIAA 171 (1235)
T ss_pred ChhhhhhHhhhCCcccccCCeeccchhhhhhhhhhccCChhhhhhhhcccccccccccccCCCCCEEEecHHHHHHHHHH
Confidence 66663 567889999999999963 57999999999999999
Q ss_pred HHHH--hccCCCceEEEcCcccHHH-HHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccC---CCCccCccccCEE
Q psy14128 102 QLAA--KVTCESDVAGVVGSLADAE-AMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLL---NNKIAGAEEADLI 175 (393)
Q Consensus 102 ~l~~--~~~g~~sv~~l~g~~~t~E-~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~---~~~~~~ie~AD~I 175 (393)
++.+ .+||+++|+++.+...... ......+|+..+|+.++++...+|..+ .....+++. .....|+++|++|
T Consensus 172 kl~~i~~kYGPdsI~~fs~~~a~s~~s~aa~~Rfl~llGg~~~~~~d~~Cd~p--~a~p~v~G~~t~~~e~~D~~nS~~I 249 (1235)
T TIGR01580 172 SNVYTVKNYGPDRVVGFSPIPAMSMVSYASGSRYLSLIGGTCLSFYDWYCDLP--PASPQTWGEQTDVPESADWYNSSYI 249 (1235)
T ss_pred HHHHHHHHhCcceEEEecCCCcccchhhHHHHHHHHhcCCccccCCCCcchhh--HHhHhheecCCCCCCchhhhcCCEE
Confidence 9965 3699999988755333222 223346899999998887654455432 122222321 1234678999999
Q ss_pred EEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcc
Q psy14128 176 LLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLR 214 (393)
Q Consensus 176 L~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~ 214 (393)
|+||+|+..+.+....++.++. ++|+|||+|||+.+.+
T Consensus 250 I~WGsN~~~T~~p~a~~l~eAr-~rGaKvVVVDPr~t~t 287 (1235)
T TIGR01580 250 IAWGSNVPQTRTPDAHFFTEVR-YKGTKTVAITPDYAEI 287 (1235)
T ss_pred EEECCChhhhcchhHHHHHHHH-HcCCeEEEEcCCCChh
Confidence 9999999888655677787775 6899999999976655
No 56
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=99.71 E-value=3.5e-16 Score=147.46 Aligned_cols=260 Identities=17% Similarity=0.126 Sum_probs=190.9
Q ss_pred HHHHHccCchHHh--hhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHh
Q psy14128 59 IKQLASGSHPFSK--KLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKL 136 (393)
Q Consensus 59 l~~i~~~~~~~~~--~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~l 136 (393)
...+--|...|.+ +-.|+++|||+.+|+|.+++|++|++..|+-|.+.+ .-..+..+..++|...+.-+++..+
T Consensus 30 ~naCr~G~akF~~~~~~~R~~~p~ik~~g~~k~v~~deAie~Aa~ILv~aK----rPllyg~s~tscEA~~~gielaE~~ 105 (429)
T COG1029 30 RNACRIGNAKFKEAFSDHRIKAPMIKDDGELKPVDYDEAIEKAAEILVNAK----RPLLYGWSSTSCEAQELGIELAEKL 105 (429)
T ss_pred hhHHhhhHHHHhhhcccccccCceEecCCceeeccHHHHHHHHHHHHHhcc----CceEeccccchHHHHHHHHHHHHHh
Confidence 3334445444543 457899999999999999999999999998776532 3345667777899988888999998
Q ss_pred CCCCccccCCCCccchhhhhhhcccCCCCccCc-cccCEEEEecCCcCccccHHHHH------HHHhhh-cCCceEEEEc
Q psy14128 137 GSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGA-EEADLILLIGTNPRFEAPLFNAR------IRKGYL-TNELDVAYIG 208 (393)
Q Consensus 137 Gt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~i-e~AD~IL~iG~n~~~~~p~l~~r------lr~a~~-~~gakiivi~ 208 (393)
|. -+|.+..+|.++...++......+.++.++ ..||+|+-||+||-.+||--..| +....| +.+-.+|+||
T Consensus 106 ga-viD~~asvchGp~~~alqe~g~p~~TlgevKNraDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD 184 (429)
T COG1029 106 GA-VIDSNASVCHGPSVLALQEAGKPTATLGEVKNRADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVD 184 (429)
T ss_pred Cc-EecCCCccccchHHHHHHhcCCcccchhhhcccccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEe
Confidence 84 477777888876555555444456677777 67999999999999999954444 222211 3567899999
Q ss_pred CCCCcccc--ccc----cCCCHHHHHHHH---cc----------------HHHHHHHHHhCCCCEEEEcCccccc----c
Q psy14128 209 PKVDLRYD--YEH----LGESADLIKQLA---SG----------------SHAFSKKLAAAKKPLIVVGADMLSR----S 259 (393)
Q Consensus 209 p~~~~~~~--~~~----lg~~~~~l~~l~---~g----------------~~~~a~~l~~a~~~~ii~G~~~~~~----~ 259 (393)
||.+.|+. ..| +++|..++.+|. .| ..++++.++.++-.+|++|.|+.++ .
T Consensus 185 ~RkT~TAklad~~~qi~p~sDyelisAl~~~l~G~~~~~~eev~gvp~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~r 264 (429)
T COG1029 185 PRKTATAKLADNHVQIKPNSDYELISALRAALHGKEPHRSEEVAGVPIEEIEELADMMKNAKFGAIFVGLGLTSSRGKHR 264 (429)
T ss_pred cCcCchhhhhhheEecCCCCcHHHHHHHHHHhcCCCCCCchhhcCCCHHHHHHHHHHHhcCCcceEEEeeceeecccccc
Confidence 98887744 344 356666665552 22 5788999999999999999999864 6
Q ss_pred CHHHHHHHHHHHHHHhCCCcccCCCccccccc-----cccC---------C--------CcHHHHhh-cccCcEEEEcCC
Q psy14128 260 DGAAVLALVQQLAAKVTCESDHLGESADLIKQ-----LASG---------S--------HAFSKKLA-AAKKPLIVVGAD 316 (393)
Q Consensus 260 ~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G~-----~~~g---------g--------~~~~~~~~-~~~~al~v~g~n 316 (393)
+.......+..|-..+...+.++....|..|- +..| | .++.+.+. ....|.+|+|+|
T Consensus 265 N~e~a~~Lv~~LNe~ak~tli~mrgH~Nv~GFnqv~~~e~GYpf~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~sD 344 (429)
T COG1029 265 NVENAINLVKDLNEYAKFTLIPMRGHYNVTGFNEVLSWETGYPFAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASD 344 (429)
T ss_pred cHHHHHHHHHHHhhhceEEEEEeccccccccccchhhhhhCCceeeecccCCcCCCcccccHHHHHhccCCCeEEEEecC
Confidence 77778888888888877777788887787663 3333 2 44566664 578999999999
Q ss_pred CC-CCCCh
Q psy14128 317 ML-SRSDG 323 (393)
Q Consensus 317 p~-~~p~~ 323 (393)
|. ++|..
T Consensus 345 p~ah~P~~ 352 (429)
T COG1029 345 PGAHFPRD 352 (429)
T ss_pred ccccChHH
Confidence 98 77864
No 57
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=99.71 E-value=2e-17 Score=172.10 Aligned_cols=294 Identities=30% Similarity=0.356 Sum_probs=211.1
Q ss_pred chHHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCC
Q psy14128 67 HPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYA 146 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~ 146 (393)
+...+... +++|.+++|+.+.+.+|.++...+...+.... +++++.++|++.++|++|++++|+..+|+++++++..
T Consensus 264 ~d~~~~~~-~~~p~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~i~~~~~~~E~~~alk~l~~~l~s~~~~~~~~ 340 (693)
T COG1034 264 YDGLNLQR-LDRPKIRVGGRLVEASWLEANEAIAQALALIK--PEKVGAIASPRASVEELFALKELAGELGSSNIDHRQE 340 (693)
T ss_pred ccccccch-hcccchhcCCeeeecChHHHHHHHHHHHhhhc--ccccceeechhhhHHHHHHHHHHHHHhccCCccccch
Confidence 45555555 89999999999999999999999998876433 3789999999999999999999999999999998621
Q ss_pred -CCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCccccc---cccCC
Q psy14128 147 -FPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDY---EHLGE 222 (393)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~~~---~~lg~ 222 (393)
.... . .-....+.+..++.+++.+|.++++|.|++.++|+++.|+|++++..+..+.+++.-.+..+.. ...+.
T Consensus 341 ~~~~~-~-~~~~~~~~~~~t~~~ie~~d~~l~ig~~~~~~~~~l~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (693)
T COG1034 341 DARLD-P-KVARAGYLYNPTIAEIESADAVLVIGANLRQEAPVLALRIRKAVKGKGLPVAVIGGVAEWLYALLLSILLGA 418 (693)
T ss_pred hhhcc-h-hhhcccccccccHhHHHhCchhhccCCCccccchhHHHHHHHHhhccCcceeeccchhHHHHHHHhhhhccC
Confidence 1110 0 1112235567789999999999999999999999999999999977788888888743333222 23344
Q ss_pred CHHHHHHHHccHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc-----ccCCCcc---cccccccc
Q psy14128 223 SADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES-----DHLGESA---DLIKQLAS 294 (393)
Q Consensus 223 ~~~~l~~l~~g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~-----~~~~~~~---n~~G~~~~ 294 (393)
....+..+..+.+.+.+.+..+++..++.|.++..+.++..+......++...+... ..+...+ |+.+....
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 498 (693)
T COG1034 419 GIALLDELALGAEAATAAVKKAERELIEKGKGALAGAKKAAILALAEKLADELGAAEARWNGVVLHEAASRVNALGLGFL 498 (693)
T ss_pred CceeeehhhcchhHHHHHHHhccccceeecceeeccCCcceeeehhHHhhhhhhhhhhccccchhhHHHHhhcccccccc
Confidence 444555555566667788889999999999999888888888888888877766322 1222222 23333222
Q ss_pred C---CCcHHHHhh-cccCcEEEEcCCCC---CCCC----------------hhhHH-----------------HHhhhhh
Q psy14128 295 G---SHAFSKKLA-AAKKPLIVVGADML---SRSD----------------GAAVL-----------------ALVQQLA 334 (393)
Q Consensus 295 g---g~~~~~~~~-~~~~al~v~g~np~---~~p~----------------~~~v~-----------------~~vq~~~ 334 (393)
+ +..++.+.. ...+++++.|..+. ..++ .++|. +|+|.++
T Consensus 499 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~a~vilp~a~~~e~~Gt~vN~eGR~q~~~ 578 (693)
T COG1034 499 PGLSGEDAALMLGPADANALLLLGIDEEADEADEHAKFVVYSDHHGDAGAEVADVVLPAASFTEKSGTYVNLEGRVQRFN 578 (693)
T ss_pred ccccchhHHhhccchhhceeeeeccchhhhhhccCCCEEEEeccccccccchhheeccccccccccceEEeecccccccc
Confidence 2 233333332 34566777777754 2332 11122 9999999
Q ss_pred hccCCCCCCCcchHHHHHHHHHHHhccccCCCCCC
Q psy14128 335 AKVTCESDVPCDWKVLNILQKAASQVAALDIGYKP 369 (393)
Q Consensus 335 ~av~~~g~~~~dw~i~~~l~~~a~~~g~~d~g~~~ 369 (393)
++..++++.+++|++ |+.+++.+|-- ++|..
T Consensus 579 ~a~~~~~~~~~~w~~---l~~L~~~lg~~-i~~~~ 609 (693)
T COG1034 579 QALRPGGDEREDWRV---LHALASELGLK-LDFDQ 609 (693)
T ss_pred ccccCcccchHHHHH---HHHhHHHhCCC-CCCch
Confidence 999999999999999 67777777765 66654
No 58
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=99.62 E-value=2.1e-16 Score=167.66 Aligned_cols=189 Identities=40% Similarity=0.540 Sum_probs=134.4
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCCcccchhhhcccHHHHHHHHccCchHHhhhhhcCCCE
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHPFSKKLSAAKKPL 80 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d~~~~~~~~g~~~~~l~~i~~~~~~~~~~l~r~~~Pl 80 (393)
||++|+||++|+|||.|+|++++||||++++++++|.+||+..+++|++.++|.++..|.+++++.++|++.+..+++|+
T Consensus 362 Ie~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~~~t~~~~~lg~~~~~l~~l~~g~~~~a~~l~~Ak~~~ 441 (687)
T PRK09130 362 IEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADLTYPYEYLGAGPDTLADLASGKHEFADVLKAAKRPM 441 (687)
T ss_pred HHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCccccCccccccCCCHHHHHHHHHhHHHHHHHHhcCCCcE
Confidence 57899999999999999999999999999755579999999999999999999999999999999999999999999999
Q ss_pred EEeCCceeeeChHHHHHHHHHHHHHhcc--C--CCceEEEcC-----------------cccHHHHHHHH-HHHHHHhCC
Q psy14128 81 IVVGADMLSRSDGAAVLALVQQLAAKVT--C--ESDVAGVVG-----------------SLADAEAMVAL-KDLLNKLGS 138 (393)
Q Consensus 81 I~~g~~~~~~~~~~al~~~a~~l~~~~~--g--~~sv~~l~g-----------------~~~t~E~~~~~-~k~~~~lGt 138 (393)
|+.|..+..++...++...+..|+.... + .+.+..+.. +....|.+..- -|++..+|+
T Consensus 442 Ii~G~g~~~~~~g~~~~~ai~~La~~~G~~~~~~~G~~~L~~~an~~ga~dlG~~p~~~g~~~~~ll~~g~ik~l~llga 521 (687)
T PRK09130 442 IIVGQGALARADGAAVLALAAKLAEKVGAVRDGWNGFNVLHTAASRVGGLDLGFVPGEGGKDAAEMLESGALDVLYLLGA 521 (687)
T ss_pred EEECCcccccccHHHHHHHHHHHHHHhCCccCCCCCeEecCCchHHHHHHHhcCCCCcccccHHHHHhCCCcCEEEEecC
Confidence 9999999999999888887777765421 1 111111110 11111111000 022233444
Q ss_pred CCccccCCCCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHh
Q psy14128 139 EDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKG 196 (393)
Q Consensus 139 ~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a 196 (393)
+.++..+ . ..+|. ++.-....+....||+|||..+..|.++.++|.+.|-+
T Consensus 522 dp~~~~~---~---~~~fv-V~qd~~~t~ta~~ADVVLP~a~~~Ek~Gt~~n~egrvq 572 (687)
T PRK09130 522 DEIDISK---G---KSAFV-IYQGHHGDRGAHRADVILPGAAYTEKSGTYVNTEGRVQ 572 (687)
T ss_pred Chhhccc---c---cCCEE-EEecccCCccHhhCCEEEcCCCccccCCeEECCCCceE
Confidence 3332211 0 01122 23222333446899999999999999999988765544
No 59
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=99.30 E-value=5e-12 Score=125.82 Aligned_cols=106 Identities=61% Similarity=1.002 Sum_probs=94.6
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCCcccchhhhcccHHHHHHHHccCchHHhhhhhcCCCE
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHPFSKKLSAAKKPL 80 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d~~~~~~~~g~~~~~l~~i~~~~~~~~~~l~r~~~Pl 80 (393)
|+++|+||++|+|++.|+|+++.|+||+++++|++|.+|++..+.+++..++|.+...|..+++|.++|++.+.++++|+
T Consensus 143 i~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~~g~d~~~l~~l~~~~~~~a~~l~~a~~~~ 222 (375)
T cd02773 143 IEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDHLGTDAKTLQDIASGKHPFSKALKDAKKPM 222 (375)
T ss_pred HhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccccchhhccCCCcHHHHHHHHHhHHHHHHHHhcCCCcE
Confidence 57899999999999999999999999998767999999999999999988899999999999999999999999999999
Q ss_pred EEeCCceeeeChHHHHHHHHHHHHHh
Q psy14128 81 IVVGADMLSRSDGAAVLALVQQLAAK 106 (393)
Q Consensus 81 I~~g~~~~~~~~~~al~~~a~~l~~~ 106 (393)
|+.|..+..+....+....+..|...
T Consensus 223 ii~g~g~~~~~~~~~~~~~i~~l~~~ 248 (375)
T cd02773 223 IIVGSGALARKDGAAILAAVAKLAKK 248 (375)
T ss_pred EEecchhhccccHHHHHHHHHHHHHH
Confidence 99998888777777666666666443
No 60
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.71 E-value=2.4e-09 Score=112.23 Aligned_cols=192 Identities=28% Similarity=0.282 Sum_probs=126.4
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCCcccch---hhhcccHHHHHHHHccCchHHhhhhhcC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDY---EHLGESADLIKQLASGSHPFSKKLSAAK 77 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d~~~~~---~~~g~~~~~l~~i~~~~~~~~~~l~r~~ 77 (393)
+|.+|++++||.|+|+|+|++++|+||+++..+..+..+|...++.|.. ...+.....+.+...+.+.+.+.+..++
T Consensus 362 ie~~d~~l~ig~~~~~~~~~l~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (693)
T COG1034 362 IESADAVLVIGANLRQEAPVLALRIRKAVKGKGLPVAVIGGVAEWLYALLLSILLGAGIALLDELALGAEAATAAVKKAE 441 (693)
T ss_pred HHhCchhhccCCCccccchhHHHHHHHHhhccCcceeeccchhHHHHHHHhhhhccCCceeeehhhcchhHHHHHHHhcc
Confidence 5789999999999999999999999999988899999999876666655 4445455566777777888889999999
Q ss_pred CCEEEeCCceeeeChHHHHHHHHHHHHHhc---c-CCC--------------ceEEEc--CcccHHHHHHHHHHHH-HHh
Q psy14128 78 KPLIVVGADMLSRSDGAAVLALVQQLAAKV---T-CES--------------DVAGVV--GSLADAEAMVALKDLL-NKL 136 (393)
Q Consensus 78 ~PlI~~g~~~~~~~~~~al~~~a~~l~~~~---~-g~~--------------sv~~l~--g~~~t~E~~~~~~k~~-~~l 136 (393)
++++..+.....++...++....++++... . ..+ .++.+. +...+. +.+.+-- ..+
T Consensus 442 ~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~---~~~~~~~~~~~ 518 (693)
T COG1034 442 RELIEKGKGALAGAKKAAILALAEKLADELGAAEARWNGVVLHEAASRVNALGLGFLPGLSGEDAA---LMLGPADANAL 518 (693)
T ss_pred ccceeecceeeccCCcceeeehhHHhhhhhhhhhhccccchhhHHHHhhccccccccccccchhHH---hhccchhhcee
Confidence 999999988888888888888777775321 0 000 011110 111111 0000000 001
Q ss_pred CCCCccccCCCCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhh
Q psy14128 137 GSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYL 198 (393)
Q Consensus 137 Gt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~ 198 (393)
.-..++.+ .+... ..+-...|..+......+.||++|+..++++.+++++|...|-+.+
T Consensus 519 ~~~~~~~~--~~~~~-~~~~~vi~~~~~~~~~~~~a~vilp~a~~~e~~Gt~vN~eGR~q~~ 577 (693)
T COG1034 519 LLLGIDEE--ADEAD-EHAKFVVYSDHHGDAGAEVADVVLPAASFTEKSGTYVNLEGRVQRF 577 (693)
T ss_pred eeeccchh--hhhhc-cCCCEEEEeccccccccchhheeccccccccccceEEeeccccccc
Confidence 11111111 11110 0001112333445566799999999999999999999999998865
No 61
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=98.64 E-value=9.9e-08 Score=95.24 Aligned_cols=104 Identities=52% Similarity=0.780 Sum_probs=79.0
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCC-----CcccchhhhcccHHHHHHHHccCc--hHHhhh
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV-----DLRYDYEHLGESADLIKQLASGSH--PFSKKL 73 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~-----d~~~~~~~~g~~~~~l~~i~~~~~--~~~~~l 73 (393)
++++|+++++|+|++.++|++..|+|++.+++|+++..|++.. |..+++..-+.....+..++.++. ++++.+
T Consensus 146 i~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~~ad~~~~~~pg~~~~~~l~~~i~~~~~~~~a~~l 225 (386)
T cd02768 146 IEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDLIADLTYPVSPLGASLATLLDIAEGKHLKPFAKSL 225 (386)
T ss_pred HhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCccccccceEEEcCCchhHHHHHHHHHhhccHHHHHHHH
Confidence 4789999999999999999999999999865699999999965 655554432366666777777765 899999
Q ss_pred hhcCCCEEEeCCceeeeChHHHHHHHHHHHHH
Q psy14128 74 SAAKKPLIVVGADMLSRSDGAAVLALVQQLAA 105 (393)
Q Consensus 74 ~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~ 105 (393)
..+++|+|+.|..+. .............|..
T Consensus 226 ~~a~~~~i~~g~~~~-~~~~~~~~~a~~~l~~ 256 (386)
T cd02768 226 KKAKKPLIILGSSAL-RKDGAAILKALANLAA 256 (386)
T ss_pred hcCCCcEEEEcchhh-cCCcHHHHHHHHHHHH
Confidence 999999999988776 4444443333444433
No 62
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=98.48 E-value=1.9e-07 Score=98.71 Aligned_cols=106 Identities=43% Similarity=0.627 Sum_probs=84.3
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCC-CCcccc-----hhhhcccHHHHHHHHccCch-HHhhh
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK-VDLRYD-----YEHLGESADLIKQLASGSHP-FSKKL 73 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~-~d~~~~-----~~~~g~~~~~l~~i~~~~~~-~~~~l 73 (393)
++++|++|++|+|+..++|++..|+|++..++|+++.+|+|. .+.... ...||.+...+..++.+.+. +++.+
T Consensus 360 i~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l~i~Pgtd~all~~l~~~~~~~~A~~l 439 (603)
T TIGR01973 360 IEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLVFHPGLSPKKLDDIASGAHSDIAAAL 439 (603)
T ss_pred HHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhccceeecCCccHHHHHHHHhcccHHHHHHH
Confidence 478999999999999999999999999887556999999983 333322 14588888888888877764 89999
Q ss_pred hhcCCCEEEeCCceeeeChHHHHHHHHHHHHHh
Q psy14128 74 SAAKKPLIVVGADMLSRSDGAAVLALVQQLAAK 106 (393)
Q Consensus 74 ~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~ 106 (393)
..+++++|+.|.....+.........+..|...
T Consensus 440 ~~ak~~~ii~g~g~~~~~~g~~~~~a~~~L~~l 472 (603)
T TIGR01973 440 KAAKKPLIIVGDSAYSHLDGAALISAAANIAKV 472 (603)
T ss_pred hhCCCcEEEEechhhcCCCHHHHHHHHHHHHHH
Confidence 999999999998877777776665555555443
No 63
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.19 E-value=1.3e-05 Score=87.31 Aligned_cols=91 Identities=26% Similarity=0.356 Sum_probs=71.2
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCCc-c------cchhhhcccHHHHHHHHccCchHHhhh
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDL-R------YDYEHLGESADLIKQLASGSHPFSKKL 73 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d~-~------~~~~~~g~~~~~l~~i~~~~~~~~~~l 73 (393)
||++|++|++|+|++.++|++..|+||+.+++|++|.+|+|...- . |-...||.+...+..++..-+.+++.+
T Consensus 374 ie~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l~irPGtD~all~al~~~i~~~a~~l 453 (797)
T PRK07860 374 LEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLLRTAPGGEAAALDALATGAPDVAELL 453 (797)
T ss_pred HHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhceeccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999987789999999994322 1 112567888888877776555677777
Q ss_pred hhcCCCEEEeCCceeeeCh
Q psy14128 74 SAAKKPLIVVGADMLSRSD 92 (393)
Q Consensus 74 ~r~~~PlI~~g~~~~~~~~ 92 (393)
... +++++.|..+.++++
T Consensus 454 ~~~-~~~i~~g~~v~~~~~ 471 (797)
T PRK07860 454 RTP-GAVILVGERLATVPG 471 (797)
T ss_pred ccC-CCEEEEchhhccChh
Confidence 664 588888877766655
No 64
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=97.76 E-value=0.00012 Score=80.55 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=36.6
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 42 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~ 42 (393)
|+++|++|++|+|+..++|++..||||+.. +|+++.++.+.
T Consensus 369 i~~ad~Ilv~G~N~~~~~p~~~~~i~~a~~-~gaklividpr 409 (847)
T PRK08166 369 IESYDAVLVLGEDLTQTAARVALAVRQAVK-GKAREMAAAQK 409 (847)
T ss_pred HHhCCEEEEEeCChHHhhHHHHHHHHHHHH-cCCceEeeccc
Confidence 478999999999999999999999999985 78888777773
No 65
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=97.74 E-value=6.4e-05 Score=74.45 Aligned_cols=43 Identities=37% Similarity=0.581 Sum_probs=38.9
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVD 44 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d 44 (393)
++++|++|++|+|++.++|.+++|+|++.. +|.+|.+|++...
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~~~~a~~-~g~kvv~idp~~s 196 (374)
T cd00368 154 IENADLILLWGSNPAETHPVLAARLRRAKK-RGAKLIVIDPRRT 196 (374)
T ss_pred HhhCCEEEEEcCChHHhChHHHHHHHHHHH-CCCeEEEEcCCCC
Confidence 468999999999999999999999999885 7999999999543
No 66
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=97.64 E-value=0.00038 Score=72.65 Aligned_cols=62 Identities=29% Similarity=0.471 Sum_probs=48.2
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC-C------CCcccchhhhcccHHHHHHHH
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP-K------VDLRYDYEHLGESADLIKQLA 63 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~-~------~d~~~~~~~~g~~~~~l~~i~ 63 (393)
||.+|++|+||+|+--++|++..|+|+|.+.+|.++.++.+ + .|+-++-. +|.+..+|..++
T Consensus 418 ve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~~pk-pGtd~a~l~Ava 486 (978)
T COG3383 418 VEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHPK-PGTDLAWLTAVA 486 (978)
T ss_pred HhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHhhhcccCCC-CCccHHHHHHHH
Confidence 58899999999999999999999999999778999999987 2 23333322 566666554443
No 67
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=97.64 E-value=3e-05 Score=84.54 Aligned_cols=105 Identities=25% Similarity=0.399 Sum_probs=74.3
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC-CCCcccchhh-----hcccHHHHHHH----Hcc-----
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP-KVDLRYDYEH-----LGESADLIKQL----ASG----- 65 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~-~~d~~~~~~~-----~g~~~~~l~~i----~~~----- 65 (393)
++++|++|++|+|+..++|.+..|||++. ++|+++.+|++ ..++..++.. ++.....|..+ .+.
T Consensus 368 i~~ad~Il~~G~N~~~~~p~~~~~i~~a~-~~G~klividpr~t~~~~~~~~~~~~~p~~~~~~la~l~~~i~~~~~~~~ 446 (776)
T PRK09129 368 LSNLDAVLVVGSNLRKEHPLLAARLRQAA-KNGAKLSAINPVDDDFLFPVAQRIIVAPSAWADALAGVAAAVAAAKGVAL 446 (776)
T ss_pred HHhCCEEEEEecCcchhcHHHHHHHHHHH-HCCCeEEEecCCccccccccccCccCChHHHHHHHHHHHHHHHHhhcccC
Confidence 47899999999999999999999999986 48999999999 4555444321 23333333322 111
Q ss_pred ------------CchHHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHh
Q psy14128 66 ------------SHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAK 106 (393)
Q Consensus 66 ------------~~~~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~ 106 (393)
-.++++.+...++|+|+.|..+..+.....+..++..|...
T Consensus 447 ~e~~~~it~~~~I~~~A~~l~~a~~~~i~~G~g~~~~~~g~~~~~~i~~L~~l 499 (776)
T PRK09129 447 PEALAKVLAAAAARAIAQSLANGERAAILLGNLAVNHPQAATLRALAQWIAKL 499 (776)
T ss_pred hHHhhccCcHHHHHHHHHHHhcCCCeEEEECcccccCCCHHHHHHHHHHHHHH
Confidence 14567777778889999988777666677666666666543
No 68
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=97.62 E-value=0.00015 Score=73.17 Aligned_cols=45 Identities=33% Similarity=0.507 Sum_probs=39.6
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCC-CCcc
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK-VDLR 46 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~-~d~~ 46 (393)
++++|++|++|+|+..++|++.+|+||+.. +|++|..|+|. .++.
T Consensus 150 i~~ad~il~~G~n~~~~~p~~~~~l~~a~~-~g~k~i~idp~~~~~~ 195 (414)
T cd02772 150 ISELDRVLVIGSNLRKEHPLLAQRLRQAVK-KGAKLSAINPADDDFL 195 (414)
T ss_pred HHhCCEEEEECCCccccchHHHHHHHHHHH-cCCEEEEEeCccchhh
Confidence 478999999999999999999999999885 79999999994 4443
No 69
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.48 E-value=0.00025 Score=76.75 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=38.8
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 43 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~ 43 (393)
|+++|++|++|+|++.++|++..||||+.+++|+++.++.|..
T Consensus 368 I~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~ 410 (819)
T PRK08493 368 IKTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIK 410 (819)
T ss_pred HhhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5789999999999999999999999998766899999999943
No 70
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=97.19 E-value=0.0033 Score=65.12 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=37.6
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 43 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~ 43 (393)
++++|++|++|+||..++|.+..|++++- ++|++|.+|.|..
T Consensus 155 ~~~ad~il~~G~Np~~s~p~~~~~~~~a~-~~GaklivvDPr~ 196 (501)
T cd02766 155 MVNADLIVIWGINPAATNIHLMRIIQEAR-KRGAKVVVIDPYR 196 (501)
T ss_pred HhcCCEEEEECCChhhhchhHHHHHHHHH-HCCCEEEEECCCC
Confidence 47899999999999999999999999865 5899999999944
No 71
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=97.15 E-value=0.00047 Score=69.40 Aligned_cols=90 Identities=24% Similarity=0.377 Sum_probs=60.7
Q ss_pred CCCcEEEEEccCCCcchhhhhhh--------HhhhhhcCCcEEEEEcCCCCcccch------hhhcccHHHHHHHHc---
Q psy14128 2 EEADLILLIGTNPRFEAPLFNAR--------IRKGYLTNELDVAYIGPKVDLRYDY------EHLGESADLIKQLAS--- 64 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~R--------iRk~~~~~~~~v~~ig~~~d~~~~~------~~~g~~~~~l~~i~~--- 64 (393)
+++|+++++|+|+..++|.+..| +||+. ++|.+|.+|+|....+... ..||.+...+..++.
T Consensus 130 ~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~-~~g~kli~idp~~t~ta~~Ad~~l~i~pgtd~~l~~~l~~~l~ 208 (415)
T cd02761 130 NRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGG-REDRTLIVVDPRKSDTAKLADIHLQIDPGSDYELLAALRALLR 208 (415)
T ss_pred hcCCEEEEEcCCccccccHHhhhhhhhhhhhccccC-CCCCEEEEEcCCCcchhhhcceEEecCCCCcHHHHHHHHHHHh
Confidence 37999999999999999998744 34444 3688999999954433221 336666554433221
Q ss_pred ----------c-----CchHHhhhhhcCCCEEEeCCceeeeCh
Q psy14128 65 ----------G-----SHPFSKKLSAAKKPLIVVGADMLSRSD 92 (393)
Q Consensus 65 ----------~-----~~~~~~~l~r~~~PlI~~g~~~~~~~~ 92 (393)
| -.++++.+...++++|+.|..+.+...
T Consensus 209 ~~~~~~~~~~gv~~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~ 251 (415)
T cd02761 209 GAGLVPDEVAGIPAETILELAERLKNAKFGVIFWGLGLLPSRG 251 (415)
T ss_pred ccccccccccCcCHHHHHHHHHHHHhCCceEEEEeccccccCC
Confidence 1 134777788888899988877765433
No 72
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=97.00 E-value=0.0021 Score=68.96 Aligned_cols=43 Identities=30% Similarity=0.499 Sum_probs=38.8
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVD 44 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d 44 (393)
++++|+||++|+|++.++|.+++|||++.. +|+++.+|++...
T Consensus 153 i~~ad~il~~G~n~~~~~~~~~~~i~~a~~-~G~klvvidp~~s 195 (671)
T TIGR01591 153 IENADLIVIIGYNPAESHPVVAQYLKNAKR-NGAKIIVIDPRKT 195 (671)
T ss_pred HHhCCEEEEECCChhhccCHHHHHHHHHHH-CCCeEEEECCCCC
Confidence 478999999999999999999999999885 8999999999543
No 73
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=96.82 E-value=0.015 Score=59.55 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=45.2
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCCcccc------hhhhcccHHHHHH
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYD------YEHLGESADLIKQ 61 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d~~~~------~~~~g~~~~~l~~ 61 (393)
++++|++|++|+|+..++|...+|++++- ++|+++.+|.|....+-. ...||.+...+..
T Consensus 168 ~~~ad~il~~G~N~~~~~~~~~~~l~~ar-~~GaklividPr~s~ta~~Ad~~l~i~PGtD~al~la 233 (461)
T cd02750 168 WYNADYIIMWGSNVPVTRTPDAHFLTEAR-YNGAKVVVVSPDYSPSAKHADLWVPIKPGTDAALALA 233 (461)
T ss_pred HhcCcEEEEECCChHHccCchHHHHHHHH-HCCCEEEEEcCCCCcchhhcCEEeccCCCcHHHHHHH
Confidence 47899999999999999999999999865 589999999994332211 1346766654433
No 74
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=96.80 E-value=0.0027 Score=65.21 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=29.6
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTN 32 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~ 32 (393)
++++|+||++|+||..++|.+..|+|++.+++
T Consensus 143 i~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~ 174 (472)
T cd02771 143 IESADAVLVLGEDLTQTAPRIALALRQAARRK 174 (472)
T ss_pred HHhCCEEEEEeCCccccchHHHHHHHHHHHcC
Confidence 47899999999999999999999999988766
No 75
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=96.73 E-value=0.026 Score=58.05 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=44.8
Q ss_pred CCCCcEEEEEccCCCcchh-hhhhhHhhhhhcCCcEEEEEcCCCCcccch------hhhcccHHHHH
Q psy14128 1 AEEADLILLIGTNPRFEAP-LFNARIRKGYLTNELDVAYIGPKVDLRYDY------EHLGESADLIK 60 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~p-lln~RiRk~~~~~~~~v~~ig~~~d~~~~~------~~~g~~~~~l~ 60 (393)
++++|++|++|+|+..++| .+.+|++++.. +|.++.+|.|....+-.. ..||.+...+.
T Consensus 158 ~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~-~g~klividpr~s~ta~~Ad~~l~i~PGtD~al~~ 223 (477)
T cd02759 158 WENPECIVLWGKNPLNSNLDLQGHWLVAAMK-RGAKLIVVDPRLTWLAARADLWLPIRPGTDAALAL 223 (477)
T ss_pred hhcCCEEEEEccChhhhCcHHHHHHHHHHHH-CCCEEEEECCCCChhhHhhCeeeccCCCcHHHHHH
Confidence 5789999999999999999 99999998764 789999999943322111 33666655443
No 76
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=96.59 E-value=0.006 Score=63.33 Aligned_cols=59 Identities=27% Similarity=0.427 Sum_probs=46.1
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCCcccch------hhhcccHHHHH
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDY------EHLGESADLIK 60 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d~~~~~------~~~g~~~~~l~ 60 (393)
++++|+||++|+|+..++|.+..|+|++. ++|+++.+|+|....+-.. ..||.+...+.
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~i~~a~-~~G~k~i~Idp~~s~ta~~Ad~~l~i~PGtD~al~l 218 (512)
T cd02753 154 IEEADVILVIGSNTTEAHPVIARRIKRAK-RNGAKLIVADPRRTELARFADLHLQLRPGTDVALLN 218 (512)
T ss_pred HHhCCEEEEECCChhhhhHHHHHHHHHHH-HCCCeEEEEcCCCccchHhhCeeeCCCCCcHHHHHH
Confidence 46899999999999999999999999987 5899999999955444322 33566655443
No 77
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=96.57 E-value=0.0085 Score=63.83 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=46.8
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCCcccch------hhhcccHHHHHH
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDY------EHLGESADLIKQ 61 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d~~~~~------~~~g~~~~~l~~ 61 (393)
|+++|+||++|+|+..++|+...|++++..++|+++.+|.|.+.-+-.. ..+|.+...+..
T Consensus 167 i~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~irPGTD~All~g 233 (649)
T cd02752 167 IKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIRSGTDIAFLGG 233 (649)
T ss_pred HhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeCcCCChHHHHHHH
Confidence 5789999999999999999999999998754599999999965544332 335655554443
No 78
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=96.14 E-value=0.059 Score=55.15 Aligned_cols=192 Identities=18% Similarity=0.111 Sum_probs=96.7
Q ss_pred CCCCcEEEEEccCCCcchhh-hhhhHhhhhhcCCcEEEEEcCCCCcccch------hhhcccHHHHHHHH----c-c--C
Q psy14128 1 AEEADLILLIGTNPRFEAPL-FNARIRKGYLTNELDVAYIGPKVDLRYDY------EHLGESADLIKQLA----S-G--S 66 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~pl-ln~RiRk~~~~~~~~v~~ig~~~d~~~~~------~~~g~~~~~l~~i~----~-~--~ 66 (393)
++++|+||++|+|+....|. ...|++++.. +|.++.+|+|....+-.. ..||.+...+..++ + + .
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~-~g~kiivIdPr~t~ta~~AD~~i~i~PGtD~al~~a~~~~ii~~~~~d 232 (454)
T cd02755 154 FENARYIILFGRNLAEAIIVVDARRLMKALE-NGAKVVVVDPRFSELASKADEWIPIKPGTDLAFVLALIHVLISENLYD 232 (454)
T ss_pred hhcCCEEEEECcCcccccccHHHHHHHHHHH-CCCeEEEECCCCChhhHhhCEecCCCCCcHHHHHHHHHHHHHHcCCcc
Confidence 47899999999999888754 6899999764 789999999954333111 33565554433332 1 2 1
Q ss_pred chHHhhh----hhcCCCEEEeC-Ccee--eeChHHHHHHHHHHHHHhccCCCceEEEcC---cc--cHHHHHHHHHHHHH
Q psy14128 67 HPFSKKL----SAAKKPLIVVG-ADML--SRSDGAAVLALVQQLAAKVTCESDVAGVVG---SL--ADAEAMVALKDLLN 134 (393)
Q Consensus 67 ~~~~~~l----~r~~~PlI~~g-~~~~--~~~~~~al~~~a~~l~~~~~g~~sv~~l~g---~~--~t~E~~~~~~k~~~ 134 (393)
++|.+.- +..+.-+--.. .... .--..+.|..+|+.+++. .+. ..++.| .+ ...+...+..-+.-
T Consensus 233 ~~fi~~~t~g~~~~~~~~~~~t~e~~~~~~gv~~~~i~~~A~~~a~~--~~~-~~i~~g~g~~~~~~g~~~~~a~~~L~~ 309 (454)
T cd02755 233 AAFVEKYTNGFELLKAHVKPYTPEWAAQITDIPADTIRRIAREFAAA--APH-AVVDPGWRGTFYSNSFQTRRAIAIINA 309 (454)
T ss_pred HHHHHHHccCHHHHHHHHhcCCHHHHHHHHCCCHHHHHHHHHHHHhh--CCC-EEEECCccccccCchHHHHHHHHHHHH
Confidence 2232210 00000000000 0000 001234566666666541 111 222211 11 22233333333333
Q ss_pred HhCCCCccccCCCCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcc
Q psy14128 135 KLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLR 214 (393)
Q Consensus 135 ~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~ 214 (393)
..| |++...+... ..... -..-++++++|+||-.+.|-. .+++++.. +---++++|+..+.|
T Consensus 310 ltG--~ig~~Gg~~~-----------~~~~~---~~~ik~l~~~~~Np~~~~p~~-~~~~~al~-~l~f~V~~d~~~teT 371 (454)
T cd02755 310 LLG--NIDKRGGLYY-----------AGSAK---PYPIKALFIYRTNPFHSMPDR-ARLIKALK-NLDLVVAIDILPSDT 371 (454)
T ss_pred HhC--CCCCCCCccc-----------CCCCC---CCCceEEEEcCCCcccccCCH-HHHHHHHh-cCCeEEEEeCCcCch
Confidence 345 3433221110 00000 134589999999999999875 45677763 332478889865555
No 79
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=96.06 E-value=0.027 Score=59.36 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=37.6
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 42 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~ 42 (393)
++++|++|++|+||..++|.+.+|||++. ++|++|.+|+|.
T Consensus 161 i~~ad~Il~~G~Np~~~~p~~~~~l~~A~-~rGakIIvIdP~ 201 (574)
T cd02767 161 FEHTDLIFFIGQNPGTNHPRMLHYLREAK-KRGGKIIVINPL 201 (574)
T ss_pred HhcCCEEEEEcCChhhhcHHHHHHHHHHH-HCCCEEEEECCC
Confidence 46899999999999999999999999987 479999999993
No 80
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=95.44 E-value=0.014 Score=58.87 Aligned_cols=44 Identities=34% Similarity=0.530 Sum_probs=37.1
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVD 44 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d 44 (393)
++++|+||++|+|+..++|.++.|++++.+++|+++.+|+|...
T Consensus 109 ~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t 152 (432)
T PF00384_consen 109 IENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRT 152 (432)
T ss_dssp GGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-
T ss_pred eeccceEEEcccCccccccccccccccccccCCcceEEEEeccc
Confidence 47899999999999999999999999988888999999999655
No 81
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=95.20 E-value=0.068 Score=56.20 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=44.4
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhc-CCcEEEEEcCCCCcccch------hhhcccHHHH
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLT-NELDVAYIGPKVDLRYDY------EHLGESADLI 59 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~-~~~~v~~ig~~~d~~~~~------~~~g~~~~~l 59 (393)
++++|++|++|+|+..++|....|+|++..+ +|++|.+|+|....+-.. ..||.+...+
T Consensus 155 i~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~i~PGtD~al~ 220 (565)
T cd02754 155 IEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLPIRPGTDLALL 220 (565)
T ss_pred HhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeCCCCCccHHHH
Confidence 4689999999999999999999999998752 299999999954333211 3356655544
No 82
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=95.10 E-value=0.65 Score=48.46 Aligned_cols=60 Identities=7% Similarity=-0.119 Sum_probs=39.3
Q ss_pred CCCCcEEEEEccCCCcch--hhhhhhHhhhhhcCC-----cEEEEEcCCCCcccch------hhhcccHHHHH
Q psy14128 1 AEEADLILLIGTNPRFEA--PLFNARIRKGYLTNE-----LDVAYIGPKVDLRYDY------EHLGESADLIK 60 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~--plln~RiRk~~~~~~-----~~v~~ig~~~d~~~~~------~~~g~~~~~l~ 60 (393)
+|++|++|++|+|+..++ |+.+.|..+..+++| .++.+|.|....+-.. ..||.+...+.
T Consensus 194 ~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~irPGtD~al~l 266 (524)
T cd02764 194 FDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLAIRPSQEKAFAL 266 (524)
T ss_pred hhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceeccCcccHHHHHH
Confidence 578999999999999995 566666544443344 4999999944333211 33666655443
No 83
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=94.66 E-value=0.13 Score=51.71 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=33.5
Q ss_pred CCcEEEEEccCCCcchhhhhhhH--------hhhhhcCCcEEEEEcCCCC
Q psy14128 3 EADLILLIGTNPRFEAPLFNARI--------RKGYLTNELDVAYIGPKVD 44 (393)
Q Consensus 3 ~~d~~llvG~n~r~e~plln~Ri--------Rk~~~~~~~~v~~ig~~~d 44 (393)
++|+++++|+|+..++|.+..|+ |++. ++|.++.+|+|...
T Consensus 137 ~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~-~~g~~lividp~~s 185 (421)
T TIGR03129 137 RADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRG-REDRTVIVVDPRKT 185 (421)
T ss_pred cCCEEEEEccCccccCchHHhhhhhhhhhhhhhcc-cCCCEEEEECCCCC
Confidence 69999999999999999988776 3333 46889999998444
No 84
>PRK09939 putative oxidoreductase; Provisional
Probab=94.66 E-value=0.024 Score=61.47 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=37.6
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 42 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~ 42 (393)
+|++|++|++|+|+...+|.+.+|||++. ++|++|.+|+|.
T Consensus 206 i~~ad~Ili~G~Np~~~hP~~~~~l~~a~-~rGakiIvIDPr 246 (759)
T PRK09939 206 FEKCDLVICIGHNPGTNHPRMLTSLRALV-KRGAKMIAINPL 246 (759)
T ss_pred HhhCCEEEEeCCChHHHHHHHHHHHHHHH-HCCCEEEEECCC
Confidence 47899999999999999999999999986 489999999993
No 85
>COG5013 NarG Nitrate reductase alpha subunit [Energy production and conversion]
Probab=94.48 E-value=0.13 Score=55.26 Aligned_cols=139 Identities=13% Similarity=0.023 Sum_probs=80.2
Q ss_pred CceeeeChHHHHHHHHHHHH--HhccCCCceEEEcC-cccHHHHHHHHHHHHHHhCCCC---ccccCCCCccchhhhhhh
Q psy14128 85 ADMLSRSDGAAVLALVQQLA--AKVTCESDVAGVVG-SLADAEAMVALKDLLNKLGSED---LYTEYAFPLEGAGTDLRA 158 (393)
Q Consensus 85 ~~~~~~~~~~al~~~a~~l~--~~~~g~~sv~~l~g-~~~t~E~~~~~~k~~~~lGt~n---id~~~~~~~~~~~~~~~~ 158 (393)
|.|+..+|+|+.+.+|.... -.+|||++|+++.- +-.+-=+...-.||...+|-.- +|--..++-++ .+.+..
T Consensus 157 GG~VR~~W~E~~EiIAAA~vyTIk~YGPDRv~GFSPIPAMSmVSyAAGaRfl~LIGGvmlSFYDWYaDLPpAS-PQvwGe 235 (1227)
T COG5013 157 GGFVRSSWDEVNELIAAANVYTIKTYGPDRVAGFSPIPAMSMVSYAAGARFLSLIGGVMLSFYDWYADLPPAS-PQTWGE 235 (1227)
T ss_pred CceEEecHHHHHHHHHHhhhhhhhhcCCccccCcCCcchhhhhhhhccchHHHHhcchhcchhhhhcCCCCCC-cccccc
Confidence 77999999999999988764 24699999987532 1112222234458888887221 11111111110 011110
Q ss_pred cccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCC--cccccccc----CCCHHH
Q psy14128 159 NYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVD--LRYDYEHL----GESADL 226 (393)
Q Consensus 159 ~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~--~~~~~~~l----g~~~~~ 226 (393)
.-- -+--.|=-++-.|+.||+|.-.+-+.-....-.+. .+|+|+++|.|+.. ..|.+.++ |+|.+.
T Consensus 236 QTD-VPESaDWynssyii~wGsNvP~TRTPDahf~te~R-YkGtK~v~vspDyae~~KfaD~Wl~~~~GtD~Al 307 (1227)
T COG5013 236 QTD-VPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVR-YKGTKTVVVSPDYAEVAKFADLWLAPKQGTDAAL 307 (1227)
T ss_pred cCC-CCcccccccceeeeeeccCCCccCCCchhhHHHhh-hcCcceEEECCchHHhhhccccccCccCCCcHHH
Confidence 000 00012335677899999998777766666565553 68999999999532 22554443 566554
No 86
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=93.11 E-value=0.086 Score=57.35 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=37.2
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 41 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~ 41 (393)
++++|++|++|+||...+|.+.++||++. ++|++|.+|+|
T Consensus 196 i~~ad~Il~~G~Np~~~~p~~~~~l~~a~-~rGakiIvIdP 235 (743)
T TIGR01701 196 FEHTDCLVFIGSNAGTNHPRMLKYLYAAK-KRGAKIIAINP 235 (743)
T ss_pred HHhCCEEEEEecCcccccHHHHHHHHHHH-HCCCEEEEECC
Confidence 47899999999999999999999999987 48999999999
No 87
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=92.83 E-value=0.13 Score=57.32 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=39.3
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCCcc
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLR 46 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d~~ 46 (393)
++++|++|++|+|+..++|...+|++++. ++|++|.+|.|.+.-+
T Consensus 222 ~~na~~Il~~G~Np~~t~~~~~~~l~~a~-~~GaklVvIdPr~t~t 266 (912)
T TIGR03479 222 WFNADYIIMWGSNPSVTRIPDAHFLSEAR-YNGARVVSIAPDYNPS 266 (912)
T ss_pred hhcCcEEEEecCChHHcCCchHHHHHHHH-hcCCeEEEECCCCChh
Confidence 47899999999999999999999999986 4899999999954433
No 88
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=91.96 E-value=2.1 Score=37.78 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=27.7
Q ss_pred cccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCccc
Q psy14128 170 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRY 215 (393)
Q Consensus 170 e~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~~ 215 (393)
.++|++|.+|++. |+.+.-++-.......|.+.++......+
T Consensus 107 ~~~DlvlfvG~~~----~~~~~~l~~lk~f~~~~~~~~~~~y~~~a 148 (171)
T PRK00945 107 GNYDLVIFIGVTY----YYASQGLSALKHFSPLKTITIDRYYHPNA 148 (171)
T ss_pred CCcCEEEEecCCc----hhHHHHHHHHhhcCCceEEEecCCcCCCC
Confidence 7899999999986 66665444332122478888887444443
No 89
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=91.21 E-value=0.24 Score=51.87 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=42.0
Q ss_pred CCCCcEEEEEccCCCcchhhhhh------hHhhhhhcCCcEEEEEcCCCCcccch------hhhcccHHHH
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNA------RIRKGYLTNELDVAYIGPKVDLRYDY------EHLGESADLI 59 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~------RiRk~~~~~~~~v~~ig~~~d~~~~~------~~~g~~~~~l 59 (393)
++++|++|++|+|+..++|.++. |++++. ++|++|.+|.|...-+-.. ..||.+...+
T Consensus 154 ~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~-~~G~kliviDPr~t~ta~~AD~~l~irPGtD~aL~ 223 (539)
T cd02762 154 IDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAK-DRGGSLVVIDPRRTETAKLADEHLFVRPGTDAWLL 223 (539)
T ss_pred hhhCCEEEEEecChHhhCCccccccCHHHHHHHHH-hCCCEEEEECCCCchhhHhcCEeeCcCCCcHHHHH
Confidence 47899999999999999998776 665544 5799999999954433221 3356655543
No 90
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=90.80 E-value=0.3 Score=53.30 Aligned_cols=59 Identities=8% Similarity=0.134 Sum_probs=42.7
Q ss_pred CCCCcEEEEEccCCCcchhhhhh-hHhhhhhcCCcEEEEEcCCCCcccch------hhhcccHHHH
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNA-RIRKGYLTNELDVAYIGPKVDLRYDY------EHLGESADLI 59 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~-RiRk~~~~~~~~v~~ig~~~d~~~~~------~~~g~~~~~l 59 (393)
+|++|++|++|+|+..++|+.+. +++++..++|.+|.+|.|....+-.. ..||.+...+
T Consensus 194 ~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~i~PGtD~al~ 259 (759)
T PRK15488 194 LANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHAIRPGTDLAVV 259 (759)
T ss_pred HhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeeccCCCcHHHHH
Confidence 47899999999999999998664 48876645799999999954333221 3456665544
No 91
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=90.73 E-value=0.3 Score=54.88 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=37.8
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVD 44 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d 44 (393)
++++|++|++|+|+...+|+..+|++++- ++|++|.+|.|.+.
T Consensus 219 i~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak-~~GakiIvIDPR~t 261 (1009)
T TIGR01553 219 IKNSDLILVMGGNPAENHPIGFKWAIRAK-KKGAKIIHIDPRFN 261 (1009)
T ss_pred HHhCCEEEEECCChhhhChHHHHHHHHHH-HcCCEEEEEcCCCC
Confidence 47899999999999999999999998876 48999999999543
No 92
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=90.56 E-value=0.4 Score=50.57 Aligned_cols=58 Identities=16% Similarity=0.035 Sum_probs=43.8
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCCcccch------hhhcccHHHH
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDY------EHLGESADLI 59 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d~~~~~------~~~g~~~~~l 59 (393)
++++|++|++|+|+..++|..-++++++- ++|+++.+|.|...-+-.. ..||.+...+
T Consensus 157 ~~~ad~il~~G~Np~~s~~~~~~~~~~a~-~~GakliviDPr~s~ta~~Ad~~l~irPGTD~al~ 220 (567)
T cd02765 157 WVNAKTIIIWGSNILETQFQDAEFFLDAR-ENGAKIVVIDPVYSTTAAKADQWVPIRPGTDPALA 220 (567)
T ss_pred HhcCcEEEEECCChHHccchhHHHHHHHH-HcCCeEEEECCCCCcchhhcCEEeccCCCchHHHH
Confidence 46899999999999999999878888765 4899999999954433221 3466655543
No 93
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=89.31 E-value=3.7 Score=35.91 Aligned_cols=36 Identities=19% Similarity=0.504 Sum_probs=27.2
Q ss_pred hHHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHH
Q psy14128 68 PFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQL 103 (393)
Q Consensus 68 ~~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l 103 (393)
..++.++++++|+|+.|+........+.+..+++++
T Consensus 19 ~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEkl 54 (162)
T TIGR00315 19 LVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKF 54 (162)
T ss_pred HHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHH
Confidence 456667889999999999887555666666666665
No 94
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=87.13 E-value=0.84 Score=50.46 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=43.8
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhh-cCCcEEEEEcCCCCcccch------hhhcccHHHHH
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYL-TNELDVAYIGPKVDLRYDY------EHLGESADLIK 60 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~-~~~~~v~~ig~~~d~~~~~------~~~g~~~~~l~ 60 (393)
++++|++|++|+|+...+|+...|++++.. ++|++|.+|.|...-+... ..||.+...+.
T Consensus 204 i~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ta~~ad~~l~irPGtD~al~~ 270 (830)
T PRK13532 204 IEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRSFELADNGIIFTPQTDLAILN 270 (830)
T ss_pred HHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCchhHhcCeeeccCCCCcHHHHH
Confidence 468999999999999999999999976542 4799999999844333221 34566655433
No 95
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=86.81 E-value=0.96 Score=49.41 Aligned_cols=58 Identities=9% Similarity=0.087 Sum_probs=38.6
Q ss_pred CCCCcEEEEEccCCCcchh-hhhhhHhhhhhcCCcEEEEEcCCCCcccch------hhhcccHHHH
Q psy14128 1 AEEADLILLIGTNPRFEAP-LFNARIRKGYLTNELDVAYIGPKVDLRYDY------EHLGESADLI 59 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~p-lln~RiRk~~~~~~~~v~~ig~~~d~~~~~------~~~g~~~~~l 59 (393)
++++|++|++|+|+..+.+ +...|+.++ +++|+++.+|.|...-+-.. ..||.++..+
T Consensus 171 ~~~ad~Il~~G~Np~~s~~~~~~~~~~~a-r~~GaKlIvVDPr~t~ta~~AD~wlpirPGTD~AL~ 235 (760)
T cd02760 171 TPLANYVISFGSNVEASGGPCAVTRHADA-RVRGYKRVQVEPHLSVTGACSAEWVPIRPKTDPAFM 235 (760)
T ss_pred HhcCCEEEEECCCchHhcCcHHHHHHHHH-HHcCCeEEEEcCCCCcchhhcCeEeCcCCCcHHHHH
Confidence 4689999999999988864 444445544 45799999999954322211 3466665543
No 96
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=85.68 E-value=2.3 Score=41.60 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCC---ccccccccccC--CCcHHHHhhcccC
Q psy14128 234 SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGE---SADLIKQLASG--SHAFSKKLAAAKK 308 (393)
Q Consensus 234 ~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~---~~n~~G~~~~g--g~~~~~~~~~~~~ 308 (393)
+++.++.|.+||+|+++-++... -+..+.-..|++.+|+-+-.-.. |+-.+|....| +-++.| ......
T Consensus 69 ie~Aa~ILv~aKrPllyg~s~ts-----cEA~~~gielaE~~gaviD~~asvchGp~~~alqe~g~p~~Tlge-vKNraD 142 (429)
T COG1029 69 IEKAAEILVNAKRPLLYGWSSTS-----CEAQELGIELAEKLGAVIDSNASVCHGPSVLALQEAGKPTATLGE-VKNRAD 142 (429)
T ss_pred HHHHHHHHHhccCceEeccccch-----HHHHHHHHHHHHHhCcEecCCCccccchHHHHHHhcCCcccchhh-hccccc
Confidence 45589999999999987665332 34556667788888843322221 22223333333 111111 122345
Q ss_pred cEEEEcCCCC-CCCC
Q psy14128 309 PLIVVGADML-SRSD 322 (393)
Q Consensus 309 al~v~g~np~-~~p~ 322 (393)
.++++|+||. ++|.
T Consensus 143 viVyWGtNP~~shPR 157 (429)
T COG1029 143 VIVYWGTNPMHSHPR 157 (429)
T ss_pred EEEEeCCCcccccch
Confidence 6899999999 7775
No 97
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=84.70 E-value=1.3 Score=46.34 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=42.1
Q ss_pred CCCCcEEEEEccCCCcchhhh--hhhHhhhhhcCCcEEEEEcCCCCcccch------hhhcccHHHHHH
Q psy14128 1 AEEADLILLIGTNPRFEAPLF--NARIRKGYLTNELDVAYIGPKVDLRYDY------EHLGESADLIKQ 61 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~pll--n~RiRk~~~~~~~~v~~ig~~~d~~~~~------~~~g~~~~~l~~ 61 (393)
++++|++|++|+|+..+.+.. ..|++++. ++|++|.+|.|...-+... ..||.+...+..
T Consensus 160 ~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~-~~gakliviDPr~s~ta~~AD~~l~i~PGtD~al~la 227 (523)
T cd02757 160 YANAKYILFFGADPLESNRQNPHAQRIWGGK-MDQAKVVVVDPRLSNTAAKADEWLPIKPGEDGALALA 227 (523)
T ss_pred hhcCcEEEEECCChHHhCCCcHHHHHHHHHH-HCCCEEEEECCCCChhhHhcCEeeCCCCCcHHHHHHH
Confidence 478999999999998775443 37888875 4799999999954433221 346666554433
No 98
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=82.47 E-value=1.2 Score=48.45 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=37.3
Q ss_pred CCCCcEEEEEccCCCcchhhh---hhhHhhhhhcCCcEEEEEcCCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLF---NARIRKGYLTNELDVAYIGPKVD 44 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~pll---n~RiRk~~~~~~~~v~~ig~~~d 44 (393)
+|++|++|++|+|+-..+|.+ ..||.++..++|++|.+|.|...
T Consensus 209 ~~~ad~il~~GsN~a~~~~~~~~~~~~l~~a~~~~G~KlVVVDPr~t 255 (735)
T cd02758 209 FDNAEFALFIGTSPAQAGNPFKRQARRLAEARTEGNFKYVVVDPVLP 255 (735)
T ss_pred HhhCcEEEEeCCCHHHhCCCcchHHHHHHHHHHhCCCEEEEECCCCC
Confidence 478999999999999999998 67887766447999999999543
No 99
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=81.92 E-value=1.2 Score=47.31 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=35.1
Q ss_pred CCcEEEEEccCCCcchhhh--------hhhHhhhhhcCCcEEEEEcCCCC
Q psy14128 3 EADLILLIGTNPRFEAPLF--------NARIRKGYLTNELDVAYIGPKVD 44 (393)
Q Consensus 3 ~~d~~llvG~n~r~e~pll--------n~RiRk~~~~~~~~v~~ig~~~d 44 (393)
++|++|++|+|+...+|.. ..+++++. ++|++|.+|.|...
T Consensus 169 ~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~-~~GakiivIDPr~s 217 (609)
T cd02751 169 HSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAK-DAGVRFICIDPRYT 217 (609)
T ss_pred cCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHH-HCCCeEEEECCCCC
Confidence 4999999999999999976 38999876 48999999999543
No 100
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=81.86 E-value=2.1 Score=47.41 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=36.9
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhh-cCCcEEEEEcCCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYL-TNELDVAYIGPKVD 44 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~-~~~~~v~~ig~~~d 44 (393)
++++|++|++|+|+-..+|+...|++++.. ++|+++.+|.|...
T Consensus 204 i~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDPr~t 248 (830)
T TIGR01706 204 FEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLSTFTH 248 (830)
T ss_pred HhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 478999999999999999999999987543 36999999998433
No 101
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=81.69 E-value=2.3 Score=45.80 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=34.5
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 43 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~ 43 (393)
++++|+++++|+|+..+.+.+..+++++. ++|+++.+|+|..
T Consensus 153 ~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak-~~GaKlIvIDPr~ 194 (679)
T cd02763 153 LEHTKYFMMIGVAEDHHSNPFKIGIQKLK-RRGGKFVAVNPVR 194 (679)
T ss_pred HHhCCEEEEECCCCcccCchHHHHHHHHH-hCCCcEEEEcCcC
Confidence 47899999999999887655677888866 4799999999843
No 102
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=78.59 E-value=1.7 Score=47.84 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=36.1
Q ss_pred CCCCcEEEEEccCCCcchh---hhhhhHhhhhhcCCcEEEEEcCCCC
Q psy14128 1 AEEADLILLIGTNPRFEAP---LFNARIRKGYLTNELDVAYIGPKVD 44 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~p---lln~RiRk~~~~~~~~v~~ig~~~d 44 (393)
++++|++|++|+|+...+| ....+++|+..++|++|.+|.|...
T Consensus 212 ~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t 258 (797)
T TIGR02166 212 IENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYT 258 (797)
T ss_pred HHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCC
Confidence 4789999999999999988 5566777766557999999999543
No 103
>PRK08322 acetolactate synthase; Reviewed
Probab=78.06 E-value=4.9 Score=42.07 Aligned_cols=109 Identities=21% Similarity=0.223 Sum_probs=56.3
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCccc-HHHHHHHHHHHHHHhCCCCccccCC---CCccchhhhhhhcccCC-C
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLA-DAEAMVALKDLLNKLGSEDLYTEYA---FPLEGAGTDLRANYLLN-N 164 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~-t~E~~~~~~k~~~~lGt~nid~~~~---~~~~~~~~~~~~~~~~~-~ 164 (393)
.++.+.+..+++.|.+. ++-.+++|... ..+....+.+|+..+|.+-+.+-.+ ++..+ ...+ ..++.. .
T Consensus 180 ~~~~~~i~~~~~~l~~A----~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~h-p~~~-G~~G~~~~ 253 (547)
T PRK08322 180 YASPKAIERAAEAIQAA----KNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETH-PLSL-GTAGLSQG 253 (547)
T ss_pred CCCHHHHHHHHHHHHhC----CCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEccccCCcCCCCC-chhc-cCCCCCCC
Confidence 35567787777777542 34444544432 2233455678888888665432111 11100 0001 111111 1
Q ss_pred C--ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 165 K--IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 165 ~--~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
. -.-++++|+||.+|+...+-.+.. . .. ..+.+++.||..
T Consensus 254 ~~~~~~l~~aDlil~lG~~l~~~~~~~-~----~~-~~~~~~i~id~d 295 (547)
T PRK08322 254 DYVHCAIEHADLIINVGHDVIEKPPFF-M----NP-NGDKKVIHINFL 295 (547)
T ss_pred HHHHHHHHhCCEEEEECCCCccccccc-c----CC-CCCCeEEEEeCC
Confidence 1 123689999999998865432221 1 11 245789999873
No 104
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=77.60 E-value=2.1 Score=47.16 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=36.0
Q ss_pred CCCCcEEEEEccCCCcchhh---hhhhHhhhhhcCCcEEEEEcCCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPL---FNARIRKGYLTNELDVAYIGPKVD 44 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~pl---ln~RiRk~~~~~~~~v~~ig~~~d 44 (393)
++++|++|++|+|+...+|. +..|++++..++|++|.+|.|...
T Consensus 229 ~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t 275 (814)
T PRK14990 229 IENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYT 275 (814)
T ss_pred HhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCC
Confidence 47899999999999988774 567888876457999999999544
No 105
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=77.58 E-value=6.2 Score=42.05 Aligned_cols=111 Identities=14% Similarity=0.047 Sum_probs=54.3
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccCCC-CccchhhhhhhcccC--CC-
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYAF-PLEGAGTDLRANYLL--NN- 164 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~~~-~~~~~~~~~~~~~~~--~~- 164 (393)
.++.+.+..+++.|.+. ++-.+++|.... -+....+.+|+..+|.+-+..-.+- .+.....-+...++. +.
T Consensus 208 ~~~~~~v~~~~~~L~~A----krPvI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~gkg~~p~~hpl~~G~~G~~g~~~ 283 (616)
T PRK07418 208 KGNPRQINAALKLIEEA----ERPLLYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAY 283 (616)
T ss_pred CCCHHHHHHHHHHHHhC----CCCEEEECCCcCcccHHHHHHHHHHHHCCCEEEccCCCcCCCCCCcccccCCCCCCCHH
Confidence 35667788877777542 333344443322 2334456788888886644321110 000000000001111 11
Q ss_pred CccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 165 KIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 165 ~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
...-+++||+||.+|++..+..+-... .. .+++++|.||.
T Consensus 284 ~~~~l~~aDlvL~vG~~~~~~~~~~~~----~~-~~~~~~i~id~ 323 (616)
T PRK07418 284 ANFAVTECDLLIAVGARFDDRVTGKLD----EF-ASRAKVIHIDI 323 (616)
T ss_pred HHHHHHhCCEEEEEcCCCCccccCChh----hc-CCCCeEEEEeC
Confidence 122468999999999975432221111 11 34678998886
No 106
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=77.29 E-value=21 Score=34.65 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=87.0
Q ss_pred CceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCC
Q psy14128 85 ADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNN 164 (393)
Q Consensus 85 ~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~ 164 (393)
+...+.+|.+.+....+ .|-| ++.|-+.-.+..-.+.|+++.-|+.-.|.+..+ .++. +..+.
T Consensus 79 gG~~~~~~~~~i~eAl~------~G~n---Vvsglh~~ls~dp~~~k~A~~~G~rl~dvR~p~------~~l~--~~~tG 141 (339)
T COG3367 79 GGVLPESWREYIVEALE------AGMN---VVSGLHSFLSDDPEFVKLAERTGVRLDDVRKPP------LDLE--YLCTG 141 (339)
T ss_pred CCcCcHHHHHHHHHHHH------hCch---hhhhhHHHhhcChHHHHHHHHcCCeeEeeccCc------cchh--hhccC
Confidence 45667778777665443 2323 223334445666677899999998666654321 1111 22222
Q ss_pred CccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC-CCCccccccccCCCHHHHHHHHccH-HHHHHHHH
Q psy14128 165 KIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP-KVDLRYDYEHLGESADLIKQLASGS-HAFSKKLA 242 (393)
Q Consensus 165 ~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p-~~~~~~~~~~lg~~~~~l~~l~~g~-~~~a~~l~ 242 (393)
.....+ |++++++|++-+.--=-....++++.+.+|++...+.. .+.......-.-.+. ...+++.|. +.+...+.
T Consensus 142 ~~~k~~-a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtgil~~~~gvvvda-v~~DfaAGave~~v~~~~ 219 (339)
T COG3367 142 MARKVD-AKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTGILIADDGVVVDA-VVMDFAAGAVESAVYEAE 219 (339)
T ss_pred cccccC-CcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCceeeEEecCceEecc-hhHHHHHHHHHHHHHHhh
Confidence 333333 99999999998776666667788888778999888876 323222111111111 133444442 33444444
Q ss_pred hCCCC--EEEEcCccccccC
Q psy14128 243 AAKKP--LIVVGADMLSRSD 260 (393)
Q Consensus 243 ~a~~~--~ii~G~~~~~~~~ 260 (393)
+ +++ ++|=|++...|+.
T Consensus 220 e-~~~Dii~VEGQgsl~HP~ 238 (339)
T COG3367 220 E-KNPDIIFVEGQGSLTHPA 238 (339)
T ss_pred h-cCCCEEEEeccccccCCC
Confidence 4 344 4444777777763
No 107
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=76.10 E-value=8.8 Score=40.39 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+||+|+|++|.|+.... ....+..|++.+++-+
T Consensus 191 ~~aa~~L~~AkrPvIl~G~G~~~a~----a~~~l~~lae~~~~Pv 231 (550)
T COG0028 191 RKAAELLAEAKRPVILAGGGVRRAG----ASEELRELAEKLGAPV 231 (550)
T ss_pred HHHHHHHHhCCCCEEEECCCccccc----cHHHHHHHHHHHCCCE
Confidence 4589999999999999999998633 3456677777777433
No 108
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=73.08 E-value=3.1 Score=44.35 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=36.3
Q ss_pred CCCCcEEEEEccCCCcchhh---hhhhHhhhhhcCCcEEEEEcCCCCcc
Q psy14128 1 AEEADLILLIGTNPRFEAPL---FNARIRKGYLTNELDVAYIGPKVDLR 46 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~pl---ln~RiRk~~~~~~~~v~~ig~~~d~~ 46 (393)
++++|+++++|+|+-..+|. ...+++++- ++|++|.+|.|...-+
T Consensus 164 ~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~-~~G~klivIDPr~t~t 211 (617)
T cd02770 164 LKDSKLVVLFGHNPAETRMGGGGSTYYYLQAK-KAGAKFIVIDPRYTDT 211 (617)
T ss_pred HhcCCEEEEECCCHHHhcCCCCchHHHHHHHH-HcCCeEEEECCCCCcc
Confidence 47899999999999999885 457888765 4799999999954433
No 109
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=72.49 E-value=5.7 Score=37.15 Aligned_cols=58 Identities=10% Similarity=0.136 Sum_probs=37.1
Q ss_pred CCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC---CCCcccchhhhcccHHHHHHH
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP---KVDLRYDYEHLGESADLIKQL 62 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~---~~d~~~~~~~~g~~~~~l~~i 62 (393)
+++|.+|+|||-+..+ | ..++.+....+|+++..||. ..|-..++...+.-...+..+
T Consensus 177 ~~aDl~lviGTSl~V~-p--a~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~l 237 (244)
T PRK14138 177 SKASLMIVMGSSLVVY-P--AAELPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANRV 237 (244)
T ss_pred hcCCEEEEeCcCCeee-c--HhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHHH
Confidence 6899999999999987 4 44444333347999999997 234333333334444444444
No 110
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=72.44 E-value=7 Score=36.55 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=30.0
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
...++.||++|++|+..... |.-.. .+.+. ++|++|++|++.
T Consensus 173 ~~~~~~aDl~lviGTSl~V~-pa~~l-~~~~~-~~g~~~i~iN~~ 214 (244)
T PRK14138 173 IRLSSKASLMIVMGSSLVVY-PAAEL-PLITV-RSGGKLVIVNLG 214 (244)
T ss_pred HHHHhcCCEEEEeCcCCeee-cHhHH-HHHHH-HcCCeEEEEcCC
Confidence 34568999999999977654 53333 33444 479999999983
No 111
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=71.45 E-value=5 Score=33.56 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.++++|+|++|.++.... ....+..|++.+|+-+
T Consensus 2 ~~~~~~L~~A~rP~il~G~g~~~~~----a~~~l~~lae~~~~Pv 42 (137)
T PF00205_consen 2 DEAADLLSSAKRPVILAGRGARRSG----AAEELRELAEKLGIPV 42 (137)
T ss_dssp HHHHHHHHH-SSEEEEE-HHHHHTT----CHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhCCCEEEEEcCCcChhh----HHHHHHHHHHHHCCCE
Confidence 4688999999999999999887543 3456677778887443
No 112
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=71.41 E-value=5.6 Score=36.19 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=30.3
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
.+.++++|++|++|+..... |...+ .+.+. ++|++|++|++.
T Consensus 150 ~~~~~~aDlllviGTSl~V~-pa~~l-~~~~~-~~g~~vi~iN~~ 191 (206)
T cd01410 150 AAAACRADLFLCLGTSLQVT-PAANL-PLKAA-RAGGRLVIVNLQ 191 (206)
T ss_pred HHHHhcCCEEEEECcCceeh-hHHHH-HHHHH-hcCCeEEEECCC
Confidence 34467899999999976544 54433 45554 579999999984
No 113
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=70.97 E-value=7.1 Score=34.12 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=30.4
Q ss_pred HHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 236 AFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 236 ~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.+++.|..+++|+|++|.++... .....+..|++.+|.-+
T Consensus 19 ~aa~lLk~AKRPvIivG~ga~~~----~a~e~l~~laEklgiPV 58 (162)
T TIGR00315 19 LVAMMIKRAKRPLLIVGPENLED----EEKELIVKFIEKFDLPV 58 (162)
T ss_pred HHHHHHHcCCCcEEEECCCcCcc----cHHHHHHHHHHHHCCCE
Confidence 47788999999999999988742 34566777777777433
No 114
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=69.29 E-value=9.7 Score=35.45 Aligned_cols=41 Identities=24% Similarity=0.245 Sum_probs=30.5
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
+.++.+|++|++|+-... .|+... ++.+. ++|+++++|++.
T Consensus 173 ~~~~~~dl~lviGTsl~V-~p~~~l-~~~~~-~~~~~~i~iN~~ 213 (242)
T PRK00481 173 EALEEADLFIVIGTSLVV-YPAAGL-PYEAR-EHGAKTVEINLE 213 (242)
T ss_pred HHHhcCCEEEEECCCceE-cCHhHH-HHHHH-HCCCeEEEECCC
Confidence 346789999999987766 565544 35444 479999999984
No 115
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=68.65 E-value=10 Score=36.05 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=37.3
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCC-cc--ccccccCCCHHHHH
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVD-LR--YDYEHLGESADLIK 228 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~-~~--~~~~~lg~~~~~l~ 228 (393)
.+.++++|++|++|+..... |.. .-.+.+. ++|++|++|++..+ ++ +....+..+.+.+.
T Consensus 194 ~~~~~~aDlllviGTSl~V~-pa~-~l~~~a~-~~g~~vi~IN~~~t~~~~~~~d~~i~~~~~~~~ 256 (271)
T PTZ00409 194 EKEIDKCDLLLVVGTSSSVS-TAT-NLCYRAH-RKKKKIVEVNISKTYITNRISDYHVRAKFSELA 256 (271)
T ss_pred HHHHHcCCEEEEECCCCccc-CHH-HHHHHHH-HcCCCEEEECCCCCCCCCccccEEEECcHHHHH
Confidence 34578999999999977653 443 2234444 57999999998433 22 22344544555443
No 116
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=67.99 E-value=20 Score=37.75 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 234 SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 234 ~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.+++++.|.+||+|+|++|.++.... ....+..|++.+|+-+
T Consensus 197 i~~~a~~L~~AkrPvil~G~g~~~~~----a~~~l~~lae~lg~pV 238 (561)
T PRK06048 197 IKRAAELIMKAERPIIYAGGGVISSN----ASEELVELAETIPAPV 238 (561)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccc----HHHHHHHHHHHhCCCE
Confidence 34588999999999999999986422 3456777888887543
No 117
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=66.69 E-value=19 Score=38.09 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+||+|+|++|.++... .....+..|++.+|+.+
T Consensus 212 ~~~~~~L~~AkrPvil~G~g~~~~----~a~~~l~~lae~~g~pv 252 (587)
T PRK06965 212 RKAVSLLLSAKRPYIYTGGGVILA----NASRELRQLADLLGYPV 252 (587)
T ss_pred HHHHHHHHhcCCCEEEECCCcccc----chHHHHHHHHHHhCCCE
Confidence 458899999999999999999753 23455677788887543
No 118
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=64.60 E-value=6.9 Score=35.98 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=29.8
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
.+.++.+|++|++|+..... |.- .-.+.+. ++|+++++|++.
T Consensus 166 ~~~~~~~Dl~lvvGTSl~V~-p~~-~l~~~a~-~~g~~~i~iN~~ 207 (222)
T cd01413 166 IEAAKEADLFIVLGSSLVVY-PAN-LLPLIAK-ENGAKLVIVNAD 207 (222)
T ss_pred HHHHhcCCEEEEEccCCEec-cHh-HHHHHHH-HcCCeEEEEcCC
Confidence 44578899999999977654 432 2234443 579999999983
No 119
>PRK08322 acetolactate synthase; Reviewed
Probab=64.17 E-value=26 Score=36.59 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|+.|.++.. . .....+..|++.+|+-+
T Consensus 187 ~~~~~~l~~A~rPviv~G~g~~~-~---~a~~~l~~lae~~~~pv 227 (547)
T PRK08322 187 ERAAEAIQAAKNPLILIGAGANR-K---TASKALTEFVDKTGIPF 227 (547)
T ss_pred HHHHHHHHhCCCcEEEECCCcch-h---cHHHHHHHHHHHhCCCE
Confidence 34788999999999999999853 2 23567778888887443
No 120
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=63.79 E-value=27 Score=37.27 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+||+|+|++|.++.. .+ ....+..|++.+|+-+
T Consensus 215 ~~~~~~L~~AkrPvI~~G~g~~~-~~---a~~~l~~lae~l~~pV 255 (616)
T PRK07418 215 NAALKLIEEAERPLLYVGGGAIS-AG---AHAELKELAERFQIPV 255 (616)
T ss_pred HHHHHHHHhCCCCEEEECCCcCc-cc---HHHHHHHHHHHHCCCE
Confidence 45888999999999999999863 22 3456677788877443
No 121
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=63.64 E-value=26 Score=37.26 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCC
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCE 278 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~ 278 (393)
.++++.|.+||+|+|++|.++. .....+..|++.+|+-
T Consensus 199 ~~a~~~L~~AkrPvi~~G~g~~------~a~~~l~~lae~~~~P 236 (597)
T PRK08273 199 RRAAEVLNAGRKVAILVGAGAL------GATDEVIAVAERLGAG 236 (597)
T ss_pred HHHHHHHhcCCCEEEEECcchH------hHHHHHHHHHHHhCCc
Confidence 4588999999999999999984 2345677888888744
No 122
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=63.38 E-value=17 Score=34.00 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=28.8
Q ss_pred ccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 169 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 169 ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
++.+|++|++|+..... |.-.. .+.+. ++|++|+.|++.
T Consensus 170 ~~~~DlllviGTSl~V~-pa~~l-~~~a~-~~g~~vi~IN~~ 208 (242)
T PTZ00408 170 MSKTDLFVAVGTSGNVY-PAAGF-VGRAQ-FYGATTLELNLE 208 (242)
T ss_pred HHhCCEEEEEccCCccc-cHHHH-HHHHH-HcCCeEEEECCC
Confidence 68899999999976554 54333 34454 579999999984
No 123
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=63.15 E-value=38 Score=29.36 Aligned_cols=33 Identities=27% Similarity=0.489 Sum_probs=23.0
Q ss_pred HHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHH
Q psy14128 69 FSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAA 105 (393)
Q Consensus 69 ~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~ 105 (393)
.+.-.+|+++|++++|.... ++.+...+.||++
T Consensus 28 ~ammIkkAkrPLlivGp~~~----dee~~E~~vKi~e 60 (170)
T COG1880 28 VAMMIKKAKRPLLIVGPLAL----DEELLELAVKIIE 60 (170)
T ss_pred HHHHHHhcCCceEEeccccc----CHHHHHHHHHHHH
Confidence 44567899999999999877 2344445555554
No 124
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=63.06 E-value=13 Score=32.81 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCC
Q psy14128 236 AFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 277 (393)
Q Consensus 236 ~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~ 277 (393)
.+++.+.+||+|+|++|.++... ......+..|++.++.
T Consensus 26 ~aa~lI~~AKrPlIivG~ga~~~---~ea~e~l~elaEkl~i 64 (171)
T PRK00945 26 IAAMMIKKAKRPLLVVGSLLLDD---EELLDRAVKIAKKANI 64 (171)
T ss_pred HHHHHHHhCCCcEEEECcCcccc---chHHHHHHHHHHHHCC
Confidence 36788899999999999998751 3456777888888774
No 125
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=62.30 E-value=31 Score=36.53 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCC
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCE 278 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~ 278 (393)
.++++.|.++|+|+|++|.++... + ....+..|++.+|+-
T Consensus 208 ~~a~~~L~~AkrPvil~G~g~~~~-~---a~~~l~~lae~lg~P 247 (585)
T CHL00099 208 EQAAKLILQSSQPLLYVGGGAIIS-D---AHQEITELAELYKIP 247 (585)
T ss_pred HHHHHHHHcCCCcEEEECCCCchh-c---hHHHHHHHHHHHCCC
Confidence 448889999999999999999643 2 345677788888743
No 126
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=62.05 E-value=9.5 Score=36.01 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=29.7
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
.+.++++|++|+||+..... |.. .-...+. ++|+++++|++.
T Consensus 199 ~~~~~~aDlllviGTSl~V~-pa~-~l~~~a~-~~g~~viiIN~~ 240 (260)
T cd01409 199 AARLAEADALLVLGSSLMVY-SGY-RFVLAAA-EAGLPIAIVNIG 240 (260)
T ss_pred HHHHhcCCEEEEeCcCceec-chh-hHHHHHH-HCCCcEEEEcCC
Confidence 34578899999999977654 322 2244444 479999999984
No 127
>PLN02573 pyruvate decarboxylase
Probab=61.86 E-value=24 Score=37.28 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 234 SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 234 ~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
..++++.|.+||+|+|+.|.++... + ....+.+|++.+|+-+
T Consensus 214 ~~~a~~~L~~AkrPvil~G~g~~~~-~---a~~~l~~lae~~~~PV 255 (578)
T PLN02573 214 VEAAAEFLNKAVKPVLVGGPKLRVA-K---ACKAFVELADASGYPV 255 (578)
T ss_pred HHHHHHHHHhCCCCEEEEChhhccc-c---hHHHHHHHHHHhCCCE
Confidence 3458899999999999999998653 2 3456778888887543
No 128
>PRK06154 hypothetical protein; Provisional
Probab=61.82 E-value=28 Score=36.67 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|+.|.++... ++ ...+..|++.+|+-+
T Consensus 205 ~~aa~~L~~A~rPvil~G~g~~~~-~a---~~~l~~lae~l~~PV 245 (565)
T PRK06154 205 VEAAALLLAAERPVIYAGQGVLYA-QA---TPELKELAELLEIPV 245 (565)
T ss_pred HHHHHHHHhCCCCEEEECCCcccc-Ch---HHHHHHHHHHhCCCE
Confidence 448899999999999999999753 22 345677777777433
No 129
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=61.02 E-value=29 Score=36.48 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.++|+|+|++|.++... + ....+..|++.+|+-+
T Consensus 202 ~~~~~~L~~AkrPvIl~G~g~~~~-~---a~~~l~~lae~~~~pv 242 (564)
T PRK08155 202 RDAAAMINAAKRPVLYLGGGVINS-G---APARARELAEKAQLPT 242 (564)
T ss_pred HHHHHHHHhCCCCEEEECCCcccc-c---hHHHHHHHHHHHCCCE
Confidence 447889999999999999998643 2 2456777888877443
No 130
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=60.99 E-value=35 Score=35.78 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
.++++.|.++++|+|++|.++.. . .....+..|++.+|+-+.
T Consensus 195 ~~~~~~L~~A~rPvi~~G~g~~~-~---~a~~~l~~lae~~~~pV~ 236 (557)
T PRK08199 195 ARLAELLARAERPLVILGGSGWT-E---AAVADLRAFAERWGLPVA 236 (557)
T ss_pred HHHHHHHHhCCCCEEEECCCcCc-h---hHHHHHHHHHHHhCCCEE
Confidence 34788999999999999998854 2 235677888888885443
No 131
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=60.71 E-value=31 Score=36.29 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|++|.++... + ....+..|++.+|+-+
T Consensus 198 ~~~~~~L~~A~rPvil~G~g~~~~-~---a~~~l~~lae~~~~pv 238 (572)
T PRK06456 198 KKAAEILINAERPIILVGTGVVWS-N---ATPEVLELAELLHIPI 238 (572)
T ss_pred HHHHHHHHhCCCcEEEECCCCccc-c---hHHHHHHHHHHhCCCE
Confidence 347888999999999999999753 2 3466788888888543
No 132
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=60.49 E-value=29 Score=36.38 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
.++++.|.+||+|+|+.|.++... + ....+..|+..+|+-+.
T Consensus 192 ~~~~~~L~~AkrPvi~~G~g~~~~-~---a~~~l~~lae~l~~pv~ 233 (558)
T TIGR00118 192 KKAAELINLAKKPVILVGGGVIIA-G---ASEELKELAERIQIPVT 233 (558)
T ss_pred HHHHHHHHhCCCcEEEECCCcccc-c---hHHHHHHHHHHhCCCEE
Confidence 457899999999999999998642 2 34567778887775443
No 133
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=60.25 E-value=32 Score=36.27 Aligned_cols=41 Identities=29% Similarity=0.301 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|+.|.++... + ....+..|++.+|+-+
T Consensus 197 ~~~~~~L~~A~rPvil~G~g~~~~-~---a~~~l~~lae~~~~pv 237 (572)
T PRK08979 197 KRGLQALLAAKKPVLYVGGGAIIS-G---ADKQILQLAEKLNLPV 237 (572)
T ss_pred HHHHHHHHhCCCCEEEECCCcccc-C---hHHHHHHHHHHhCCCE
Confidence 347889999999999999998653 2 3345677888887543
No 134
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=60.23 E-value=28 Score=36.62 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|+.|.++... + ..+.+..|++.+|+-+
T Consensus 194 ~~~~~~L~~A~rPviv~G~g~~~~-~---a~~~l~~lae~~~~pV 234 (563)
T PRK08527 194 KKAAEAIKEAKKPLFYLGGGAILS-N---ASEEIRELVKKTGIPA 234 (563)
T ss_pred HHHHHHHHcCCCCEEEECCCcccc-c---hHHHHHHHHHHHCCCE
Confidence 457889999999999999999653 2 3456677777777443
No 135
>KOG4166|consensus
Probab=59.81 E-value=14 Score=37.17 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHH
Q psy14128 234 SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLA 272 (393)
Q Consensus 234 ~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~ 272 (393)
++++++.+..+|+|++.+|.|+++++++..++..+.+.+
T Consensus 288 i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~fser~ 326 (675)
T KOG4166|consen 288 IEQIARLISLAKKPVLYVGGGCLNSSDGPRLLGRFSERT 326 (675)
T ss_pred HHHHHHHHHhccCceEEeCcccccCCcchHHHHHHHHhh
Confidence 677999999999999999999999999887666655544
No 136
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=59.70 E-value=29 Score=36.92 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|+.|.++.. .+ ....+..|++.+|+-+
T Consensus 222 ~~~~~~L~~AkrPlIl~G~g~~~-~~---a~~~l~~lae~l~~PV 262 (612)
T PRK07789 222 REAAKLIAAARRPVLYVGGGVIR-AE---ASAELRELAELTGIPV 262 (612)
T ss_pred HHHHHHHHhCCCCEEEECCCccc-cC---HHHHHHHHHHHHCCCE
Confidence 44788999999999999999954 33 3455677777777433
No 137
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=58.30 E-value=11 Score=41.63 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=29.6
Q ss_pred cCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcc
Q psy14128 172 ADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLR 214 (393)
Q Consensus 172 AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~ 214 (393)
-++++++|+||-.+.|=.+ +++++.. +---++++|...+.|
T Consensus 468 ik~l~v~g~Np~~s~p~~~-~~~~al~-~ldf~Vv~D~~~teT 508 (825)
T PRK15102 468 LKMMIFSGTNPWHRHQDRN-RMKEAFR-KLETVVAIDNQWTAT 508 (825)
T ss_pred eEEEEECCCCHHHcCcCHH-HHHHHhc-CCCEEEEecCccCch
Confidence 5788999999998888765 6777763 322477888755555
No 138
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=58.18 E-value=36 Score=36.05 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+||+|+|+.|.++... ...+.+..|++.+|+-+
T Consensus 193 ~~~~~~L~~AkrPvIl~G~g~~~~----~a~~~l~~lae~~g~PV 233 (588)
T TIGR01504 193 EKAVEMLNAAERPLIVAGGGVINA----DAADLLQEFAELTGVPV 233 (588)
T ss_pred HHHHHHHHhCCCcEEEECCCcchh----hhHHHHHHHHHHhCCCe
Confidence 348889999999999999998753 34566778888887443
No 139
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=57.48 E-value=29 Score=36.28 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 234 SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 234 ~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
..++++.|.+||+|+|++|.++..+. ....+..|++.+|+-+
T Consensus 191 v~~~~~~l~~AkrPvi~~G~g~~~~~----a~~~l~~lae~~~~pv 232 (535)
T TIGR03394 191 ADEVLARMRSATSPVMMVCVEVRRYG----LEAKVAELAQRLGVPV 232 (535)
T ss_pred HHHHHHHHHhCCCCEEEEChhhcccC----cHHHHHHHHHHhCCCE
Confidence 34588999999999999999997532 3456777888887433
No 140
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=57.13 E-value=35 Score=35.96 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|++|.++... + ....+..|++.+|+-+
T Consensus 197 ~~a~~~L~~A~rPvi~~G~g~~~~-~---a~~~l~~lae~~~~pv 237 (574)
T PRK07979 197 KRALQTLVAAKKPVVYVGGGAINA-A---CHQQLKELVEKLNLPV 237 (574)
T ss_pred HHHHHHHHcCCCCEEEECCCcccc-c---hHHHHHHHHHHhCCCE
Confidence 448899999999999999998653 2 3455777888887543
No 141
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=56.75 E-value=14 Score=33.82 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=29.5
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
+.++.+|++|++|+-.... |+. .-.+.+. ++|+++++|++.
T Consensus 163 ~~~~~~Dl~lvlGTSl~V~-p~~-~l~~~~~-~~~~~~i~iN~~ 203 (218)
T cd01407 163 EALAKADLLLVIGTSLQVY-PAA-GLPLYAP-ERGAPVVIINLE 203 (218)
T ss_pred HHHhcCCEEEEeCCCcccc-cHH-HHHHHHH-HCCCeEEEECCC
Confidence 3467799999999876655 543 3355554 479999999983
No 142
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=56.50 E-value=31 Score=36.42 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
.++++.|.+|++|+|+.|.++.... ....+..|++.+|+-+.
T Consensus 187 ~~~~~~L~~A~rP~i~~G~g~~~~~----a~~~l~~lae~~~~PV~ 228 (579)
T TIGR03457 187 AQAARLLAEAKFPVIISGGGVVMGD----AVEECKALAERLGAPVV 228 (579)
T ss_pred HHHHHHHHhCCCCEEEECcCccccC----hHHHHHHHHHHhCCCEE
Confidence 3488899999999999999987532 24557778888875443
No 143
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=56.30 E-value=41 Score=35.51 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
.++++.|.+|++|+|+.|.++... + ....+..|++.+|+-+.
T Consensus 205 ~~~~~~L~~A~rPvIl~G~g~~~~-~---a~~~l~~lae~~~~PV~ 246 (570)
T PRK06725 205 REVAKAISKAKRPLLYIGGGVIHS-G---GSEELIEFARENRIPVV 246 (570)
T ss_pred HHHHHHHHcCCCcEEEECCCcccc-c---hHHHHHHHHHHhCCCEE
Confidence 347889999999999999999542 2 34566777877775433
No 144
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=56.03 E-value=44 Score=34.23 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=27.7
Q ss_pred HHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhC
Q psy14128 237 FSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVT 276 (393)
Q Consensus 237 ~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg 276 (393)
.++.|+.+|+|+||.|.|+.-+ .....+..|++..|
T Consensus 222 A~~lik~ak~PlIvaGGGv~YS----~A~~~L~af~E~~~ 257 (617)
T COG3962 222 AAALIKSAKKPLIVAGGGVLYS----GAREALRAFAETHG 257 (617)
T ss_pred HHHHHHhcCCCEEEecCceeec----hHHHHHHHHHHhcC
Confidence 6788999999999999998752 33456666777766
No 145
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=55.79 E-value=44 Score=35.24 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|+.|.++... + ....+..|++.+|+-+
T Consensus 206 ~~~~~~L~~A~rPvIl~G~g~~~~-~---a~~~l~~lae~~~~pv 246 (571)
T PRK07710 206 RKLVQAVSVAKKPVILAGAGVLHA-K---ASKELTSYAEQQEIPV 246 (571)
T ss_pred HHHHHHHHhCCCCEEEECCCcCcc-c---hHHHHHHHHHHhCCCE
Confidence 447889999999999999998642 2 2456777888887543
No 146
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=55.07 E-value=42 Score=35.37 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|+.|.++... + ....+..|+..+|+.+
T Consensus 201 ~~~~~~L~~A~rPvil~G~g~~~~-~---a~~~l~~lae~l~~pv 241 (566)
T PRK07282 201 KKILKQLSKAKKPVILAGGGINYA-E---AATELNAFAERYQIPV 241 (566)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcc-c---HHHHHHHHHHHhCCCE
Confidence 458889999999999999999642 2 2355677777777433
No 147
>PRK08617 acetolactate synthase; Reviewed
Probab=54.23 E-value=55 Score=34.26 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+||+|+|++|.++... .....+..|++.+|+-+
T Consensus 192 ~~~~~~L~~AkrPvi~~G~g~~~~----~a~~~l~~lae~~~~pV 232 (552)
T PRK08617 192 NYLAELIKNAKLPVLLLGMRASSP----EVTAAIRRLLERTNLPV 232 (552)
T ss_pred HHHHHHHHhCCCCEEEECCCcchh----hHHHHHHHHHHHhCCCE
Confidence 347889999999999999998642 23567778888887443
No 148
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=54.17 E-value=47 Score=35.12 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
.++++.|.+||+|+|+.|.++... + ....+..|++.+|+-+.
T Consensus 194 ~~~~~~L~~AkrPvil~G~g~~~~-~---a~~~l~~lae~~~~pv~ 235 (586)
T PRK06276 194 KKAAELIAEAERPVILAGGGVIIS-G---ASEELIELSELVKIPVC 235 (586)
T ss_pred HHHHHHHHcCCCeEEEECCCcCcc-c---HHHHHHHHHHHHCCCEE
Confidence 447889999999999999988642 2 24567788888885443
No 149
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=53.88 E-value=42 Score=35.11 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCC
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCE 278 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~ 278 (393)
.++++.|.+||+|+|+.|.++.... ....+..|++.+++-
T Consensus 196 ~~a~~~L~~AkrPvil~G~g~~~~~----a~~~l~~lae~~~~p 235 (539)
T TIGR03393 196 DAAENKLAMAKRVSLLADFLALRHG----LKHALQKWVKEVPMP 235 (539)
T ss_pred HHHHHHHHhCCCCEEEeChhhcccC----hHHHHHHHHHHhCCC
Confidence 3478899999999999999886532 345677777777743
No 150
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=53.09 E-value=58 Score=34.59 Aligned_cols=108 Identities=17% Similarity=0.113 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccH---HHHHHHHHHHHHHhCCCCccccCC---CCccchhhhhhhcccC-C
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLAD---AEAMVALKDLLNKLGSEDLYTEYA---FPLEGAGTDLRANYLL-N 163 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t---~E~~~~~~k~~~~lGt~nid~~~~---~~~~~~~~~~~~~~~~-~ 163 (393)
++.+.+..+++.|.+ ++.-.+++|.... .+....+.+|+..+|.+-+.+... ++..+ .-+...++. +
T Consensus 197 ~~~~~l~~a~~~L~~----A~rPvil~G~g~~~~~~~a~~~l~~lae~lg~pv~tt~~gkg~~p~~h--pl~~G~~G~~~ 270 (595)
T PRK09107 197 GDAEAITEAVELLAN----AKRPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLMGLGAYPASG--KNWLGMLGMHG 270 (595)
T ss_pred CCHHHHHHHHHHHHh----CCCcEEEECCcccccchhHHHHHHHHHHHHCCCEEECccccccCCCCC--CcccCCCCCCc
Confidence 466778888887754 2344455444322 234556789999999765433111 11100 000111111 1
Q ss_pred CC--ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 164 NK--IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 164 ~~--~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
.. ...+++||+||.+|+...+-.+.-... . ..+.++|.||.
T Consensus 271 ~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~----~-~~~~~~I~id~ 313 (595)
T PRK09107 271 TYEANMAMHDCDVMLCVGARFDDRITGRLDA----F-SPNSKKIHIDI 313 (595)
T ss_pred cHHHHHHHHhCCEEEEECCCCCccccCchhh----c-CCCCeEEEEEC
Confidence 11 223688999999998754432211111 1 23568998886
No 151
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=52.97 E-value=54 Score=34.31 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|..||+|+|++|.++.. .+ ..+.+..|++.+|+-+
T Consensus 187 ~~~~~~L~~AkrPvIl~G~g~~~-~~---a~~~l~~lae~l~~Pv 227 (548)
T PRK08978 187 EQARALLAQAKKPVLYVGGGVGM-AG---AVPALREFLAATGMPA 227 (548)
T ss_pred HHHHHHHHcCCCCEEEECCCccc-cc---hHHHHHHHHHHHCCCE
Confidence 34778899999999999998853 22 2456777888877433
No 152
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=52.89 E-value=55 Score=34.49 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+||+|+|++|.++. .....+..|++.+|+-+
T Consensus 192 ~~~~~~L~~AkrPvii~G~g~~------~a~~~l~~lae~l~~PV 230 (574)
T PRK09124 192 RKLAALLNGSSNITLLCGSGCA------GAHDELVALAETLKAPI 230 (574)
T ss_pred HHHHHHHHcCCCCEEEECcChH------hHHHHHHHHHHHhCCce
Confidence 3478899999999999998772 23466788888888544
No 153
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=52.87 E-value=23 Score=33.04 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=28.3
Q ss_pred CCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 41 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~ 41 (393)
+++|++|+|||-+... |. .++-+...+.|++|..||.
T Consensus 171 ~~~DlllviGTSl~V~-pa--~~l~~~a~~~g~~vi~IN~ 207 (242)
T PTZ00408 171 SKTDLFVAVGTSGNVY-PA--AGFVGRAQFYGATTLELNL 207 (242)
T ss_pred HhCCEEEEEccCCccc-cH--HHHHHHHHHcCCeEEEECC
Confidence 5789999999999887 32 4444434457999999997
No 154
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=52.23 E-value=44 Score=35.22 Aligned_cols=42 Identities=26% Similarity=0.345 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
.++++.|.++++|+|++|.++.. .+ ....+..|++.+|+.+.
T Consensus 197 ~~~~~~L~~A~rPvil~G~g~~~-~~---a~~~l~~lae~~g~pv~ 238 (574)
T PRK06466 197 RKAVEMLLAAKRPVIYSGGGVVL-GN---ASALLTELAHLLNLPVT 238 (574)
T ss_pred HHHHHHHHhCCCCEEEECCCccc-cC---hHHHHHHHHHHhCCCEE
Confidence 34788999999999999999864 32 24567778888875443
No 155
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=52.02 E-value=55 Score=34.58 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+||+|+|++|.++. + ....+..|++.+|+-+
T Consensus 191 ~~~~~~L~~AkrPvil~G~g~~---~---a~~~l~~lae~l~~PV 229 (575)
T TIGR02720 191 TRAVQTLKAAERPVIYYGIGAR---K---AGEELEALSEKLKIPL 229 (575)
T ss_pred HHHHHHHHcCCCcEEEECcchh---h---HHHHHHHHHHHhCCCE
Confidence 4488999999999999999885 2 2356788888887543
No 156
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=51.63 E-value=18 Score=33.14 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=29.1
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
.+.++.+|++|++|+-.... |.. .-.+.+. ++|+++++|++.
T Consensus 159 ~~~~~~~dl~lvlGTsl~v~-p~~-~l~~~~~-~~~~~~i~iN~~ 200 (224)
T cd01412 159 VEALAKADLFLVIGTSGVVY-PAA-GLPEEAK-ERGARVIEINPE 200 (224)
T ss_pred HHHHHcCCEEEEECcCccch-hHH-HHHHHHH-HCCCeEEEECCC
Confidence 34467899999999765553 543 3234443 479999999984
No 157
>PRK08611 pyruvate oxidase; Provisional
Probab=51.43 E-value=59 Score=34.32 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 236 AFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 236 ~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
++++.|.+|++|+|++|.++.. ....+..|++.+|+-+.
T Consensus 195 ~~~~~L~~AkrPvil~G~g~~~------a~~~l~~lae~~~~PV~ 233 (576)
T PRK08611 195 KAAKLINKAKKPVILAGLGAKH------AKEELLAFAEKAKIPII 233 (576)
T ss_pred HHHHHHHcCCCcEEEECcCcch------HHHHHHHHHHHhCCCEE
Confidence 4788899999999999998752 23578888888885443
No 158
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=51.36 E-value=45 Score=35.16 Aligned_cols=41 Identities=27% Similarity=0.411 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.++++|+|+.|.++.. .+ ....+..|++.+|+-+
T Consensus 197 ~~~~~~l~~A~rPvi~~G~g~~~-~~---a~~~l~~lae~~~~pv 237 (574)
T PRK06882 197 KKALKALLVAKKPVLFVGGGVIT-AE---CSEQLTQFAQKLNLPV 237 (574)
T ss_pred HHHHHHHHhCCCCEEEECCCccc-cc---hHHHHHHHHHHhCCCE
Confidence 34788899999999999999853 33 3346677788877443
No 159
>PRK07586 hypothetical protein; Validated
Probab=50.73 E-value=28 Score=36.09 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
.++++.|.+|++|+|+.|.++... .....+..|++.+|+-+.
T Consensus 188 ~~~~~~L~~A~rPvi~~G~g~~~~----~a~~~l~~lae~l~~pV~ 229 (514)
T PRK07586 188 EAAAAALRSGEPTVLLLGGRALRE----RGLAAAARIAAATGARLL 229 (514)
T ss_pred HHHHHHHHhcCCCEEEeCCcccch----hHHHHHHHHHHHHCCCEE
Confidence 347889999999999999998752 345677788888886543
No 160
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=50.58 E-value=22 Score=39.35 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=28.4
Q ss_pred cCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcc
Q psy14128 172 ADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLR 214 (393)
Q Consensus 172 AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~ 214 (393)
-+.++++|+||-.+.|-.+ +++++.. +=--++++|...+.|
T Consensus 465 ik~l~v~g~Np~~~~p~~~-~~~~al~-kldf~V~~D~~~teT 505 (822)
T TIGR02164 465 IKMMIFSGCNPWHHHQDRN-RMKQAFQ-KLETVVTIDVSWTAT 505 (822)
T ss_pred eEEEEEcCCCHHhcCcCHH-HHHHHHh-cCCEEEEecCcCChh
Confidence 5778999999998888554 5777763 322467778754544
No 161
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=50.39 E-value=15 Score=40.34 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=33.2
Q ss_pred CCCCcEEEEEccCCCcchhh--------hhhhHhhhhhcCCcEEEEEcCCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPL--------FNARIRKGYLTNELDVAYIGPKVD 44 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~pl--------ln~RiRk~~~~~~~~v~~ig~~~d 44 (393)
++++|++|++|+|+-.-+|. .-.+++++- ++|+++.+|.|...
T Consensus 165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~-~~G~klIvIDPr~t 215 (770)
T TIGR00509 165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLK-AKGKRVISIDPVRT 215 (770)
T ss_pred HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHH-HcCCEEEEEcCCCC
Confidence 36899999999999776652 336787764 58999999999433
No 162
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=49.56 E-value=75 Score=33.74 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|++|.++.... ......+..|++.+|+.+
T Consensus 203 ~~a~~~L~~A~rPvil~G~g~~~~~--~~a~~~l~~lae~lg~pv 245 (595)
T PRK09107 203 TEAVELLANAKRPVIYSGGGVINSG--PEASRLLRELVELTGFPI 245 (595)
T ss_pred HHHHHHHHhCCCcEEEECCcccccc--hhHHHHHHHHHHHHCCCE
Confidence 4488899999999999999986531 124466777888887544
No 163
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=49.33 E-value=63 Score=34.18 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|++|.++. + ....+..|++.+|+-+
T Consensus 192 ~~a~~~L~~A~rPvii~G~g~~---~---a~~~l~~lae~~g~Pv 230 (578)
T PRK06546 192 RALADAINEAKKVTLFAGAGVR---G---AHAEVLALAEKIKAPV 230 (578)
T ss_pred HHHHHHHHcCCCcEEEECcchH---H---HHHHHHHHHHHhCcce
Confidence 3478899999999999999885 1 2366778888887444
No 164
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=49.07 E-value=29 Score=32.21 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=35.5
Q ss_pred CCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCC---CCcccchhhhcccHHHHHHH
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK---VDLRYDYEHLGESADLIKQL 62 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~---~d~~~~~~~~g~~~~~l~~i 62 (393)
+++|++|+||+-+.. .|.-.- ++.+. .+|+++..||.. .+-..++...|....+|..+
T Consensus 176 ~~~dl~lviGTsl~V-~p~~~l-~~~~~-~~~~~~i~iN~~~~~~~~~~~~~i~~~~~~~l~~l 236 (242)
T PRK00481 176 EEADLFIVIGTSLVV-YPAAGL-PYEAR-EHGAKTVEINLEPTPLDSLFDLVIHGKAGEVVPEL 236 (242)
T ss_pred hcCCEEEEECCCceE-cCHhHH-HHHHH-HCCCeEEEECCCCCCCCCccCEEEECCHHHHHHHH
Confidence 578999999999998 564322 34333 468999999983 23223333334444444444
No 165
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=48.93 E-value=57 Score=34.52 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
..+++.|.+|++|+|++|.++... ++ ...+..|++.+|+-+
T Consensus 191 ~~a~~~L~~A~rPvil~G~g~~~~-~a---~~~l~~lae~~~~pv 231 (588)
T PRK07525 191 AEAAELLSEAKFPVILSGAGVVLS-DA---IEECKALAERLDAPV 231 (588)
T ss_pred HHHHHHHHhCCCCEEEECCCcccc-Ch---HHHHHHHHHHhCCCe
Confidence 447889999999999999998743 22 455666777777433
No 166
>PRK07524 hypothetical protein; Provisional
Probab=48.80 E-value=62 Score=33.73 Aligned_cols=109 Identities=22% Similarity=0.129 Sum_probs=55.4
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccCCC-C
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLLNN-K 165 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~~~-~ 165 (393)
.++.+.+..+++.|.+. +...++.|.... +..-.+.+|+..+|.+-+.+-. .++..+ .-+......+. .
T Consensus 185 ~~~~~~i~~~~~~L~~A----krPvil~G~g~~-~a~~~l~~lae~l~~pV~tt~~~kg~~p~~h--p~~~G~~~~~~~~ 257 (535)
T PRK07524 185 GPAPAALAQAAERLAAA----RRPLILAGGGAL-AAAAALRALAERLDAPVALTINAKGLLPAGH--PLLLGASQSLPAV 257 (535)
T ss_pred CCCHHHHHHHHHHHHhC----CCcEEEECCChH-HHHHHHHHHHHHHCCCEEEcccccccCCCCC--hhhccCCCCCHHH
Confidence 35667788888877542 344455444333 3334678999999966443211 111100 00000111111 1
Q ss_pred ccCccccCEEEEecCCcCcccc-HHHHHHHHhhhcCCceEEEEcC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAP-LFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p-~l~~rlr~a~~~~gakiivi~p 209 (393)
..-+++||+||.+|+....... ..+.. .. ..+.+++.||.
T Consensus 258 ~~~~~~aDlvl~vG~~~~~~~~~~~~~~---~~-~~~~~~i~id~ 298 (535)
T PRK07524 258 RALIAEADVVLAVGTELGETDYDVYFDG---GF-PLPGELIRIDI 298 (535)
T ss_pred HHHHHhCCEEEEeCCCcCcccccccccc---cc-CCCCCEEEEEC
Confidence 1226899999999987532221 00111 11 23578998886
No 167
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=48.62 E-value=1.8e+02 Score=26.17 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=24.8
Q ss_pred ccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 169 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 169 ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
...-|+++.+...- + .+-+..-++.+. ++|+++|.+-.
T Consensus 107 ~~~gDvli~iS~SG-~-s~~v~~a~~~Ak-~~G~~vI~IT~ 144 (196)
T PRK10886 107 GHAGDVLLAISTRG-N-SRDIVKAVEAAV-TRDMTIVALTG 144 (196)
T ss_pred CCCCCEEEEEeCCC-C-CHHHHHHHHHHH-HCCCEEEEEeC
Confidence 35668888776533 2 343444466665 58999999875
No 168
>PRK12474 hypothetical protein; Provisional
Probab=47.83 E-value=32 Score=35.79 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|++|.++.+. .....+..|++.+|+-+
T Consensus 192 ~~~~~~L~~A~rPvil~G~g~~~~----~a~~~l~~lae~~g~PV 232 (518)
T PRK12474 192 ERIAALLRNGKKSALLLRGSALRG----APLEAAGRIQAKTGVRL 232 (518)
T ss_pred HHHHHHHHcCCCcEEEECCccchh----hHHHHHHHHHHHHCCCE
Confidence 448889999999999999998642 34566778888888654
No 169
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=47.75 E-value=23 Score=38.77 Aligned_cols=61 Identities=26% Similarity=0.321 Sum_probs=42.9
Q ss_pred CCCCcEEEEEccCCCcchhhhhh---hHhhhhhcCCcEEEEEcCCCCcccch------hhhcccHHHHHHH
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNA---RIRKGYLTNELDVAYIGPKVDLRYDY------EHLGESADLIKQL 62 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~---RiRk~~~~~~~~v~~ig~~~d~~~~~------~~~g~~~~~l~~i 62 (393)
+|++|+++++|+|+=.-+|.+.. ++++ .+..+.+|.+|.|....+... ..||.+...+..+
T Consensus 197 ~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~-~~~~~~kviviDP~~t~Ta~~ad~~l~irPGTD~Al~~gi 266 (765)
T COG0243 197 IENADLIVLWGSNPAEAHPVLGRGLLLAKA-AKRSGAKVIVIDPRRTETAALADLWLPIRPGTDAALALGI 266 (765)
T ss_pred HhcCCEEEEECCChHHhCcchhhHHHHHHH-hccCCCEEEEECCCCChhHHhhCCccccCCCcHHHHHHHH
Confidence 58999999999999988998885 4444 334788999999955544332 4467665544443
No 170
>PLN02470 acetolactate synthase
Probab=47.39 E-value=77 Score=33.54 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|++|.++.+ ....+..|++.+++-+
T Consensus 206 ~~~~~~L~~A~rPvI~~G~g~~~------a~~~l~~lae~~~~pv 244 (585)
T PLN02470 206 EQIVRLISESKRPVVYVGGGCLN------SSEELREFVELTGIPV 244 (585)
T ss_pred HHHHHHHHcCCCCEEEECCChhh------hHHHHHHHHHHhCCCE
Confidence 45888999999999999998752 2356777888877433
No 171
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=46.76 E-value=15 Score=39.64 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=30.6
Q ss_pred CCCCcEEEEEccCCCcchhhhh--hhH----------hhhhhcCC-----cEEEEEcCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFN--ARI----------RKGYLTNE-----LDVAYIGPKV 43 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln--~Ri----------Rk~~~~~~-----~~v~~ig~~~ 43 (393)
+|++|++|++|+|+-..+|++- +-+ +|++..+| +++.+|.|..
T Consensus 221 ie~Ad~Il~~G~Np~et~pv~~~~~~~~~l~~~~~~~kk~~~~~G~~~~~~klIVVDPR~ 280 (676)
T cd02756 221 ARLADTIVLWGNNPYETQTVYFLNHWLPNLRGATVSEKQQWFPPGEPVPPGRIIVVDPRR 280 (676)
T ss_pred HHhCCEEEEECCChHHhCcchHhhhhhhhhhhHHHHHHHhhhhcCCCCCCCEEEEEeCCC
Confidence 4789999999999999999753 211 22232344 6999999943
No 172
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=46.27 E-value=33 Score=35.73 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
.++++.|.++|+|+|+.|.++.+. .....+..|++.+|+-+.
T Consensus 197 ~~~~~~L~~AkrPvIl~G~g~~~~----~a~~~l~~lae~lg~pV~ 238 (530)
T PRK07092 197 ARLGDALDAARRPALVVGPAVDRA----GAWDDAVRLAERHRAPVW 238 (530)
T ss_pred HHHHHHHHcCCCcEEEECCCcchh----hhHHHHHHHHHHHCCcEE
Confidence 347889999999999999988642 345677888888886554
No 173
>PLN02470 acetolactate synthase
Probab=45.93 E-value=1e+02 Score=32.55 Aligned_cols=107 Identities=14% Similarity=0.131 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccCCCC--
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLLNNK-- 165 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~~~~-- 165 (393)
+..+.+..+++.|.+ +++..+++|.... +..-.+.+|+..+|.+-+..-. -++..+ .-+...++....
T Consensus 200 ~~~~~i~~~~~~L~~----A~rPvI~~G~g~~-~a~~~l~~lae~~~~pv~tt~~gkg~~~~~h--pl~~G~~G~~~~~~ 272 (585)
T PLN02470 200 PEKSQLEQIVRLISE----SKRPVVYVGGGCL-NSSEELREFVELTGIPVASTLMGLGAFPASD--ELSLQMLGMHGTVY 272 (585)
T ss_pred CCHHHHHHHHHHHHc----CCCCEEEECCChh-hhHHHHHHHHHHhCCCEEEccCccccCCCCC--cccccCCCCCCCHH
Confidence 456778888887754 3444555555433 2234578899888866443211 111100 000011111111
Q ss_pred -ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 166 -IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 166 -~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
-..++++|+||.+|+...+-.+- +. ... ....++|.||.
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~-~~---~~~-~~~~~~I~id~ 312 (585)
T PLN02470 273 ANYAVDSADLLLAFGVRFDDRVTG-KL---EAF-ASRASIVHIDI 312 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccC-Ch---hhc-CCCCeEEEEEC
Confidence 13468999999999864332211 11 011 23468888887
No 174
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=45.37 E-value=29 Score=32.18 Aligned_cols=40 Identities=30% Similarity=0.466 Sum_probs=28.1
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
..++.||++|++|+..... | .+.-.+.+ + +|+++++|++.
T Consensus 171 ~~~~~aDlllvvGTSl~V~-p-a~~l~~~~-~-~~~~~v~iN~~ 210 (235)
T cd01408 171 EDKEEADLLIVIGTSLKVA-P-FASLPSRV-P-SEVPRVLINRE 210 (235)
T ss_pred HHHhcCCEEEEECCCCeec-c-HHHHHHHH-h-CCCcEEEEeCC
Confidence 4467899999999976654 5 33334444 2 57899999973
No 175
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=45.01 E-value=71 Score=33.90 Aligned_cols=104 Identities=17% Similarity=0.091 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC-CC--
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL-NN-- 164 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~-~~-- 164 (393)
++.+.+..+++.|.+ +++..+++|+... ...-.+++|+..+|.+-+.+-. .++..+ .-+...++. +.
T Consensus 193 ~~~~~i~~a~~~L~~----AkrPvi~~G~g~~-~a~~~l~~lae~~~~PV~tt~~gkg~~~e~h--p~~~G~~G~~g~~~ 265 (597)
T PRK08273 193 PYDEDLRRAAEVLNA----GRKVAILVGAGAL-GATDEVIAVAERLGAGVAKALLGKAALPDDL--PWVTGSIGLLGTKP 265 (597)
T ss_pred CCHHHHHHHHHHHhc----CCCEEEEECcchH-hHHHHHHHHHHHhCCceeecccCcccCCCCC--ccceecCCCCccHH
Confidence 456677777777754 3445555555443 3344678899988876553311 111100 001111111 11
Q ss_pred CccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 165 KIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 165 ~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
...-+++||+||.+|+... +. .... ..+.+++|.||.
T Consensus 266 a~~~~~~aDlvl~lG~~~~----~~-~~~~---~~~~~~~i~Id~ 302 (597)
T PRK08273 266 SYELMRECDTLLMVGSSFP----YS-EFLP---KEGQARGVQIDI 302 (597)
T ss_pred HHHHHHhCCEEEEeCCCCC----HH-hcCC---CCCCCeEEEEeC
Confidence 1223789999999998752 11 1011 123578999986
No 176
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=44.52 E-value=77 Score=33.20 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
..+++.|.++|+|+|++|.++.. ....+..|++.+|+-+
T Consensus 186 ~~~~~~L~~AkrPvii~G~g~~~------a~~~l~~lAe~~~~PV 224 (549)
T PRK06457 186 SRAKELIKESEKPVLLIGGGTRG------LGKEINRFAEKIGAPI 224 (549)
T ss_pred HHHHHHHHcCCCcEEEECcchhh------HHHHHHHHHHHHCCCE
Confidence 34788899999999999998751 2356778888888544
No 177
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=44.05 E-value=1.3e+02 Score=31.80 Aligned_cols=102 Identities=20% Similarity=0.199 Sum_probs=53.0
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC-CC-
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL-NN- 164 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~-~~- 164 (393)
.++.+.+..+++.|.+ ++.-.+++|.... +..-.+.+|+..+|.+-+..-. -++..+ ...+. ..+. +.
T Consensus 185 ~~~~~~i~~a~~~L~~----A~rPvii~G~g~~-~a~~~l~~lae~~g~Pv~~t~~gkg~~~~~h-p~~~G-~~G~~~~~ 257 (578)
T PRK06546 185 VPDPAEVRALADAINE----AKKVTLFAGAGVR-GAHAEVLALAEKIKAPVGHSLRGKEWIQYDN-PFDVG-MSGLLGYG 257 (578)
T ss_pred CCCHHHHHHHHHHHHc----CCCcEEEECcchH-HHHHHHHHHHHHhCcceEECcccccCCCCCC-ccccC-CCCCCCCH
Confidence 3566778888777754 2334455554333 3334567899888866443211 111000 00001 1111 11
Q ss_pred C-ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 165 K-IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 165 ~-~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
. -..++++|+||++|+..... . . ....++|.||.
T Consensus 258 ~~~~~l~~aDlvl~lG~~~~~~---------~-~-~~~~~~I~vd~ 292 (578)
T PRK06546 258 AAHEAMHEADLLILLGTDFPYD---------Q-F-LPDVRTAQVDI 292 (578)
T ss_pred HHHHHHHhCCEEEEEcCCCChh---------h-c-CCCCcEEEEeC
Confidence 1 22368999999999865311 1 1 23468998886
No 178
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=43.78 E-value=13 Score=30.88 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=21.0
Q ss_pred HHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHH
Q psy14128 69 FSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQL 103 (393)
Q Consensus 69 ~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l 103 (393)
.++.+..+++|+|+.|.........+++..+++++
T Consensus 4 ~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~ 38 (137)
T PF00205_consen 4 AADLLSSAKRPVILAGRGARRSGAAEELRELAEKL 38 (137)
T ss_dssp HHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHH
Confidence 45667777788777776655555555666655554
No 179
>PF10419 TFIIIC_sub6: TFIIIC subunit; InterPro: IPR019481 This conserved domain is found in a family of proteins that function as subunits of transcription factor IIIC (TFIIIC) []. TFIIIC in yeast and humans is required for transcription of tRNA and 5 S RNA genes by RNA polymerase III. The yeast proteins in this entry are fused to phosphoglycerate mutase domain.
Probab=43.67 E-value=19 Score=22.92 Aligned_cols=20 Identities=10% Similarity=0.408 Sum_probs=17.9
Q ss_pred CCCEEEeCCceeeeChHHHH
Q psy14128 77 KKPLIVVGADMLSRSDGAAV 96 (393)
Q Consensus 77 ~~PlI~~g~~~~~~~~~~al 96 (393)
.+|+++.|+..++-.|++.+
T Consensus 9 ~~Pil~i~~~vf~G~~~~~i 28 (35)
T PF10419_consen 9 ENPILQIGNQVFEGEWEDTI 28 (35)
T ss_pred CCCEEEECCEEEEEEEhhhc
Confidence 68999999999999999865
No 180
>PRK08611 pyruvate oxidase; Provisional
Probab=43.41 E-value=1.1e+02 Score=32.19 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhh-hhcccC-CC--Cc
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDL-RANYLL-NN--KI 166 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~-~~~~~~-~~--~~ 166 (393)
++.+.+..+++.|.+ +++-.+++|+... ...-.+.+|+..+|.+-+.+...-...+....+ ...++. +. ..
T Consensus 188 ~~~~~i~~~~~~L~~----AkrPvil~G~g~~-~a~~~l~~lae~~~~PV~tt~~gkg~~~~~hp~~~G~~g~~~~~~a~ 262 (576)
T PRK08611 188 PKPKDIKKAAKLINK----AKKPVILAGLGAK-HAKEELLAFAEKAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKPAY 262 (576)
T ss_pred CCHHHHHHHHHHHHc----CCCcEEEECcCcc-hHHHHHHHHHHHhCCCEEEccccccccCCCCccccccCCCCCcHHHH
Confidence 455677777777754 2333444444332 223456889998986654321111000000000 111111 11 12
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
..++++|+||.+|+..... + ......+++.||.
T Consensus 263 ~~l~~aDlvl~iG~~~~~~-~---------~~~~~~~~i~id~ 295 (576)
T PRK08611 263 EAMQEADLLIMVGTNYPYV-D---------YLPKKAKAIQIDT 295 (576)
T ss_pred HHHHhCCEEEEeCCCCCcc-c---------cCCCCCcEEEEeC
Confidence 3468999999999864211 1 1123478998886
No 181
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=43.29 E-value=43 Score=31.97 Aligned_cols=41 Identities=15% Similarity=0.056 Sum_probs=28.1
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
..++.+|++|++|+..... | .+.-.+.+. ++|.++++|+..
T Consensus 210 ~~~~~~DlllvvGTSl~V~-p-~~~~~~~a~-~~g~~~i~IN~~ 250 (285)
T PRK05333 210 AALDAADAVLVVGSSLMVY-S-GYRFCVWAA-QQGKPIAALNLG 250 (285)
T ss_pred HHHhcCCEEEEECcCceec-c-hhhhHHHHH-HCCCeEEEECCC
Confidence 3468899999999987654 2 122234444 467799999973
No 182
>PRK11269 glyoxylate carboligase; Provisional
Probab=42.93 E-value=39 Score=35.83 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=31.0
Q ss_pred HHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 236 AFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 236 ~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
++++.|.+||+|+|++|.++... + ....+..|++.+|+-+.
T Consensus 195 ~~~~~L~~AkrPvil~G~g~~~~-~---a~~~l~~lae~~g~PV~ 235 (591)
T PRK11269 195 KALEMLNAAERPLIVAGGGVINA-D---ASDLLVEFAELTGVPVI 235 (591)
T ss_pred HHHHHHHhCCCcEEEECCCCccc-C---HHHHHHHHHHHhCCCeE
Confidence 47889999999999999988642 2 35667788888875443
No 183
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=42.80 E-value=27 Score=33.23 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=28.6
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 41 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~ 41 (393)
++++|++|+|||-+... |. .++-+...++|++|..||+
T Consensus 197 ~~~aDlllviGTSl~V~-pa--~~l~~~a~~~g~~vi~IN~ 234 (271)
T PTZ00409 197 IDKCDLLLVVGTSSSVS-TA--TNLCYRAHRKKKKIVEVNI 234 (271)
T ss_pred HHcCCEEEEECCCCccc-CH--HHHHHHHHHcCCCEEEECC
Confidence 36899999999999987 32 3444434457999999998
No 184
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=42.75 E-value=37 Score=32.48 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=33.6
Q ss_pred CCCcEEEEEccCCCcch--hhhhhhHhhhhhcCCcEEEEEcC---CCCcccchhhhcccHHHHHHH
Q psy14128 2 EEADLILLIGTNPRFEA--PLFNARIRKGYLTNELDVAYIGP---KVDLRYDYEHLGESADLIKQL 62 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~--plln~RiRk~~~~~~~~v~~ig~---~~d~~~~~~~~g~~~~~l~~i 62 (393)
+++|++|+||+.+...- ++. +.+. ++|.++..||. ..|-.+.+..-|.-..+|..+
T Consensus 213 ~~~DlllvvGTSl~V~p~~~~~----~~a~-~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l 273 (285)
T PRK05333 213 DAADAVLVVGSSLMVYSGYRFC----VWAA-QQGKPIAALNLGRTRADPLLTLKVEASCAQALAAL 273 (285)
T ss_pred hcCCEEEEECcCceecchhhhH----HHHH-HCCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHH
Confidence 57899999999998762 222 2333 35779999997 233333333334444455544
No 185
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=42.30 E-value=34 Score=31.48 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=28.5
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
.+.++++|++|++|+.. .-.|+... ...+ ++|+++++|++.
T Consensus 166 ~~~~~~~DlllviGTSl-~v~p~~~l-~~~~--~~~~~~i~iN~~ 206 (225)
T cd01411 166 IQAIEKADLLVIVGTSF-VVYPFAGL-IDYR--QAGANLIAINKE 206 (225)
T ss_pred HHHHhcCCEEEEECcCC-eehhHHHH-HHHH--hCCCeEEEECCC
Confidence 34468899999999844 44465443 3333 369999999984
No 186
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=42.26 E-value=34 Score=31.03 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=30.1
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
+..+..+|++|++|+-.... | +..-++.+. ++++++++|++.
T Consensus 164 ~~~~~~~d~llviGtSl~v~-~-~~~l~~~~~-~~~~~~~~in~~ 205 (222)
T cd00296 164 LEALLEADLVLVIGTSLTVY-P-AARLLLRAP-ERGAPVVIINRE 205 (222)
T ss_pred HHHHhcCCEEEEECCCcccc-C-HHHHHHHHH-HCCCcEEEECCC
Confidence 44567799999999977643 3 344355554 479999999983
No 187
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=42.15 E-value=25 Score=37.38 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=31.5
Q ss_pred CCCcEEEEEccCCCcchhh---------hhhhHhhhhhcCCcEEEEEcCCC
Q psy14128 2 EEADLILLIGTNPRFEAPL---------FNARIRKGYLTNELDVAYIGPKV 43 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~pl---------ln~RiRk~~~~~~~~v~~ig~~~ 43 (393)
+++|++|++|+|+-.-+|. .-++++++- ++|++|.+|.|..
T Consensus 169 ~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar-~~GaklIvIDPr~ 218 (609)
T cd02769 169 EHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALK-DRGIRFISISPLR 218 (609)
T ss_pred hhCCeEEEECCChHHhCcccccccCCcchHHHHHHHH-hCCCEEEEEcCCC
Confidence 6899999999998765542 335677654 5899999999943
No 188
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=41.76 E-value=40 Score=35.18 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|++|.++... .....+..|++.+|+-+
T Consensus 186 ~~~~~~l~~A~rPvi~~G~g~~~~----~a~~~l~~lae~~g~pv 226 (539)
T TIGR02418 186 DEVAEAIQNAKLPVLLLGLRASSP----ETTEAVRRLLKKTQLPV 226 (539)
T ss_pred HHHHHHHHcCCCCEEEECCCcCcc----cHHHHHHHHHHHhCCCE
Confidence 347788999999999999998642 23566777888887443
No 189
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=41.39 E-value=41 Score=34.09 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCC
Q psy14128 234 SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 277 (393)
Q Consensus 234 ~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~ 277 (393)
..++++.|.+||+|+|++|.++.. . ....+..|++.+|+
T Consensus 201 i~~~~~~l~~AkrPvi~~G~g~~~-~----a~~~l~~lae~~~~ 239 (432)
T TIGR00173 201 LDELWDRLNQAKRGVIVAGPLPPA-E----DAEALAALAEALGW 239 (432)
T ss_pred HHHHHHHHhhcCCcEEEEcCCCcH-H----HHHHHHHHHHhCCC
Confidence 345788999999999999999863 1 35667778887774
No 190
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=41.14 E-value=85 Score=29.82 Aligned_cols=84 Identities=11% Similarity=-0.054 Sum_probs=46.1
Q ss_pred CCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccH
Q psy14128 109 CESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPL 188 (393)
Q Consensus 109 g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~ 188 (393)
.++.|.+++.+.+..=..|+.+||.+ +|.+-.... +... +......+..-|+++.+..-.++.-.
T Consensus 129 ~A~rI~~~G~g~S~~vA~~~~~~l~~-ig~~~~~~~----------d~~~---~~~~~~~~~~~Dv~i~iS~sG~t~e~- 193 (281)
T COG1737 129 KARRIYFFGLGSSGLVASDLAYKLMR-IGLNVVALS----------DTHG---QLMQLALLTPGDVVIAISFSGYTREI- 193 (281)
T ss_pred cCCeEEEEEechhHHHHHHHHHHHHH-cCCceeEec----------chHH---HHHHHHhCCCCCEEEEEeCCCCcHHH-
Confidence 45677777666555555566667765 342211110 0000 00134455677999999765543333
Q ss_pred HHHHHHHhhhcCCceEEEEcC
Q psy14128 189 FNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 189 l~~rlr~a~~~~gakiivi~p 209 (393)
-...+.+. ++|+|||.|-.
T Consensus 194 -i~~a~~ak-~~ga~vIaiT~ 212 (281)
T COG1737 194 -VEAAELAK-ERGAKVIAITD 212 (281)
T ss_pred -HHHHHHHH-HCCCcEEEEcC
Confidence 33345554 57999999965
No 191
>PRK08266 hypothetical protein; Provisional
Probab=40.45 E-value=83 Score=32.84 Aligned_cols=107 Identities=17% Similarity=0.119 Sum_probs=54.1
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCCCccCc
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGA 169 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~i 169 (393)
.++.+.+..+++.|.+ +++-.+++|.... +....+.+|+..+|.+-+-+.......+ .+.....+.......+
T Consensus 189 ~~~~~~i~~~~~~L~~----AkrPvIv~G~g~~-~a~~~l~~lae~~g~pv~tt~~~kg~~~--~~hp~~~g~~~~~~~~ 261 (542)
T PRK08266 189 APDPDAIAAAAALIAA----AKNPMIFVGGGAA-GAGEEIRELAEMLQAPVVAFRSGRGIVS--DRHPLGLNFAAAYELW 261 (542)
T ss_pred CCCHHHHHHHHHHHHh----CCCCEEEECCChh-hHHHHHHHHHHHHCCCEEEeccccccCC--CCCccccCCHHHHHHH
Confidence 3556677777777754 2333444444332 3344567899999966443211100000 0000000100112346
Q ss_pred cccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 170 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 170 e~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
+++|+||.+|+..... . .. +.....+.+++.||.
T Consensus 262 ~~aDlvl~lG~~~~~~-~-~~----~~~~~~~~~~i~id~ 295 (542)
T PRK08266 262 PQTDVVIGIGSRLELP-T-FR----WPWRPDGLKVIRIDI 295 (542)
T ss_pred HhCCEEEEeCCCcCcc-c-cc----ccccCCCCcEEEEEC
Confidence 7999999999875443 1 11 111234678998875
No 192
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=40.31 E-value=1e+02 Score=32.54 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCC---CCccchhhhhhhcccC-C--C
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYA---FPLEGAGTDLRANYLL-N--N 164 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~---~~~~~~~~~~~~~~~~-~--~ 164 (393)
+..+.+..+++.|.+ +++-.+++|+... +....+.+|+..+|.+-+.+-.+ ++..+ ...+. .++. . .
T Consensus 186 ~~~~~i~~~~~~L~~----AkrPvii~G~g~~-~a~~~l~~lae~l~~PV~tt~~gkg~~~~~h-p~~~G-~~G~~~~~~ 258 (574)
T PRK09124 186 PAEEELRKLAALLNG----SSNITLLCGSGCA-GAHDELVALAETLKAPIVHALRGKEHVEYDN-PYDVG-MTGLIGFSS 258 (574)
T ss_pred CCHHHHHHHHHHHHc----CCCCEEEECcChH-hHHHHHHHHHHHhCCceEEcccccccCCCCC-ccccc-CCccCCCHH
Confidence 345677777776654 3444455554432 33345678999899765533111 11100 00011 1111 1 1
Q ss_pred CccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 165 KIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 165 ~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
...-+++||+||.+|+..... . ......+++.||.
T Consensus 259 ~~~~~~~aDlvl~lG~~~~~~---------~-~~~~~~~ii~id~ 293 (574)
T PRK09124 259 GYHAMMNCDTLLMLGTDFPYR---------Q-FYPTDAKIIQIDI 293 (574)
T ss_pred HHHHHHhCCEEEEECCCCCcc---------c-ccCCCCcEEEeeC
Confidence 123468999999999864311 1 1123578999987
No 193
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=39.98 E-value=42 Score=35.41 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
.++++.|.++|+|+|+.|.++.. .+ ....+..|++.+|+-+.
T Consensus 204 ~~~~~~L~~AkrPvil~G~g~~~-~~---a~~~l~~lae~lg~pV~ 245 (578)
T PRK06112 204 AEAASLLAQAQRPVVVAGGGVHI-SG---ASAALAALQSLAGLPVA 245 (578)
T ss_pred HHHHHHHHcCCCcEEEECCCccc-cc---hHHHHHHHHHHhCCCEE
Confidence 34788999999999999988853 22 23467888888875443
No 194
>PRK07524 hypothetical protein; Provisional
Probab=39.42 E-value=50 Score=34.45 Aligned_cols=39 Identities=33% Similarity=0.529 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+||+|+|++|.++. .....+..|++.+++-+
T Consensus 192 ~~~~~~L~~AkrPvil~G~g~~------~a~~~l~~lae~l~~pV 230 (535)
T PRK07524 192 AQAAERLAAARRPLILAGGGAL------AAAAALRALAERLDAPV 230 (535)
T ss_pred HHHHHHHHhCCCcEEEECCChH------HHHHHHHHHHHHHCCCE
Confidence 4478899999999999999875 12467888888887433
No 195
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=39.38 E-value=2.5e+02 Score=24.24 Aligned_cols=115 Identities=15% Similarity=0.066 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhh---cccCC----
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRA---NYLLN---- 163 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~---~~~~~---- 163 (393)
.+.+.+..+++.|.+....++.|-+++.+....-..+...+|...++.......... .......+.. .+...
T Consensus 14 ~~~~~i~~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 92 (177)
T cd05006 14 LLAEAIEQAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIA-LTTDTSILTAIANDYGYEEVFS 92 (177)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEe-ccCCHHHHHHHhccCCHHHHHH
Confidence 356778888888876544566787777665555555555566654422111111100 0000000000 00000
Q ss_pred -CCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 164 -NKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 164 -~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
.....+..-|+++.+...-+ .+-+-.-++.+. ++|++++.|-.
T Consensus 93 ~~~~~~~~~~Dv~I~iS~SG~--t~~~i~~~~~ak-~~Ga~vI~IT~ 136 (177)
T cd05006 93 RQVEALGQPGDVLIGISTSGN--SPNVLKALEAAK-ERGMKTIALTG 136 (177)
T ss_pred HHHHHhCCCCCEEEEEeCCCC--CHHHHHHHHHHH-HCCCEEEEEeC
Confidence 00012456788887765443 333333356664 57999998864
No 196
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=36.94 E-value=1e+02 Score=32.48 Aligned_cols=106 Identities=25% Similarity=0.152 Sum_probs=54.5
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC--CC
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL--NN 164 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~--~~ 164 (393)
.+..+.+..+++.|.+ ++.-.++.|.... .....+.+|+..+|.+-+.... .++..+ .-+...++. +.
T Consensus 184 ~~~~~~v~~~~~~L~~----AkrPvil~G~g~~-~a~~~l~~lae~l~~PV~tt~~gkg~~~~~h--pl~~G~~g~~~~~ 256 (575)
T TIGR02720 184 APDVEAVTRAVQTLKA----AERPVIYYGIGAR-KAGEELEALSEKLKIPLISTGLAKGIIEDRY--PAYLGSAYRVAQK 256 (575)
T ss_pred CCCHHHHHHHHHHHHc----CCCcEEEECcchh-hHHHHHHHHHHHhCCCEEEcccccccCCCCC--cccccCCcCCCcH
Confidence 3566778888887754 3444455554443 2234677999999977553311 111100 000111111 11
Q ss_pred C-ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 165 K-IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 165 ~-~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
. -+-++++|+||.+|+.... ..+ .... ....++|.||+
T Consensus 257 ~~~~~l~~aDlvl~vG~~~~~-~~~-----~~~~-~~~~~~I~id~ 295 (575)
T TIGR02720 257 PANEALFQADLVLFVGNNYPF-AEV-----SKAF-KNTKYFIQIDI 295 (575)
T ss_pred HHHHHHHhCCEEEEeCCCCCc-ccc-----cccc-CCCceEEEEeC
Confidence 1 2236899999999986532 111 1112 23445588886
No 197
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=36.40 E-value=57 Score=34.39 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
.++++.|.+|++|+|+.|.++... + ....+..|++.+|+-+.
T Consensus 204 ~~~~~~L~~AkrPvIi~G~g~~~~-~---a~~~l~~lae~l~iPV~ 245 (569)
T PRK09259 204 DRALDLLKKAKRPLIILGKGAAYA-Q---ADEQIREFVEKTGIPFL 245 (569)
T ss_pred HHHHHHHHhCCCCEEEECcCcccc-C---hHHHHHHHHHHHCCCEE
Confidence 447889999999999999999753 2 34667778888875443
No 198
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=36.39 E-value=50 Score=30.59 Aligned_cols=37 Identities=35% Similarity=0.554 Sum_probs=26.7
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 41 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~ 41 (393)
++++|++|+|||-+... | . ..+=+... .++++..||.
T Consensus 173 ~~~aDlllvvGTSl~V~-p-a-~~l~~~~~-~~~~~v~iN~ 209 (235)
T cd01408 173 KEEADLLIVIGTSLKVA-P-F-ASLPSRVP-SEVPRVLINR 209 (235)
T ss_pred HhcCCEEEEECCCCeec-c-H-HHHHHHHh-CCCcEEEEeC
Confidence 36799999999999987 4 2 23333343 4788889996
No 199
>PRK08266 hypothetical protein; Provisional
Probab=36.37 E-value=63 Score=33.74 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
.++++.|.+||+|+|++|.+.. .....+..|++.+|+-+.
T Consensus 196 ~~~~~~L~~AkrPvIv~G~g~~------~a~~~l~~lae~~g~pv~ 235 (542)
T PRK08266 196 AAAAALIAAAKNPMIFVGGGAA------GAGEEIRELAEMLQAPVV 235 (542)
T ss_pred HHHHHHHHhCCCCEEEECCChh------hHHHHHHHHHHHHCCCEE
Confidence 3477889999999999999842 245678888988885443
No 200
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=36.30 E-value=57 Score=34.20 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|++|.++... + ....+..|++.+|+-+
T Consensus 197 ~~~~~~L~~AkrPvi~~G~g~~~~-~---a~~~l~~lae~~~~pv 237 (554)
T TIGR03254 197 DRAVELLKDAKRPLILLGKGAAYA-Q---ADEEIREFVEKTGIPF 237 (554)
T ss_pred HHHHHHHHhCCCCEEEECCCcccc-C---hHHHHHHHHHHHCCCE
Confidence 347889999999999999999753 2 2356777888887543
No 201
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=36.09 E-value=56 Score=34.45 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+|++|+|++|.++.... ....+..|++.+|+-+
T Consensus 211 ~~~~~~L~~AkrPvi~~G~g~~~~~----a~~~l~~lae~l~~Pv 251 (569)
T PRK08327 211 ARAAEMLAAAERPVIITWRAGRTAE----GFASLRRLAEELAIPV 251 (569)
T ss_pred HHHHHHHHhCCCCEEEEecccCCcc----cHHHHHHHHHHhCCCE
Confidence 3478899999999999999987533 2456677777777443
No 202
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=33.91 E-value=66 Score=29.38 Aligned_cols=37 Identities=32% Similarity=0.384 Sum_probs=26.8
Q ss_pred CCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 41 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~ 41 (393)
+++|++|+|||-+... |. .++-+....++.++..||.
T Consensus 163 ~~~dl~lvlGTsl~v~-p~--~~l~~~~~~~~~~~i~iN~ 199 (224)
T cd01412 163 AKADLFLVIGTSGVVY-PA--AGLPEEAKERGARVIEINP 199 (224)
T ss_pred HcCCEEEEECcCccch-hH--HHHHHHHHHCCCeEEEECC
Confidence 5789999999888775 43 3433323347899999997
No 203
>COG5013 NarG Nitrate reductase alpha subunit [Energy production and conversion]
Probab=33.25 E-value=28 Score=38.29 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=29.5
Q ss_pred CCCCEEEEcCccccccCHHHHHHHHHHHHHHhCC
Q psy14128 244 AKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 277 (393)
Q Consensus 244 a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~ 277 (393)
..+.|||+|.++++-.+..-+.+.+.+|...+|+
T Consensus 531 ~GRsmii~GaginHw~h~D~~YR~vlnl~~l~g~ 564 (1227)
T COG5013 531 HGRSMIIVGAGINHWYHSDMNYRGVLNLLMLCGC 564 (1227)
T ss_pred CCceeEEeccccchhhhhHHHHHHHHHHHHHhcc
Confidence 4789999999999877778889999999988873
No 204
>KOG1185|consensus
Probab=32.45 E-value=72 Score=32.84 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.+.++.|.+||+|++++|.+..-.+... .+..+.+.+|.-+
T Consensus 208 ~~av~llk~AKrPLlvvGkgAa~~~ae~----~l~~~Ve~~glPf 248 (571)
T KOG1185|consen 208 QKAVQLLKSAKRPLLVVGKGAAYAPAED----QLRKFVETTGLPF 248 (571)
T ss_pred HHHHHHHHhcCCcEEEEecccccCccHH----HHHHHHHhcCCCc
Confidence 4488899999999999999987666333 3444556676433
No 205
>PRK05858 hypothetical protein; Provisional
Probab=32.37 E-value=70 Score=33.48 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.+||+|+|++|.++.. .++ ...+..|++.+|+-+
T Consensus 194 ~~~~~~L~~AkrPvil~G~g~~~-~~a---~~~l~~lae~lg~pV 234 (542)
T PRK05858 194 ARAAGLLAEAQRPVIMAGTDVWW-GHA---EAALLRLAEELGIPV 234 (542)
T ss_pred HHHHHHHHhCCCcEEEECCCccc-cCh---HHHHHHHHHHhCCCE
Confidence 44788999999999999998853 222 457778888888543
No 206
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=32.08 E-value=2.5e+02 Score=27.15 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=69.6
Q ss_pred HccCchHHhhhhhcCCCEE--EeCCceeeeChHHH-HHHHHHHHHHhc-cCCCceEEEcCcccHHHHHHHHHHHHHHhCC
Q psy14128 63 ASGSHPFSKKLSAAKKPLI--VVGADMLSRSDGAA-VLALVQQLAAKV-TCESDVAGVVGSLADAEAMVALKDLLNKLGS 138 (393)
Q Consensus 63 ~~~~~~~~~~l~r~~~PlI--~~g~~~~~~~~~~a-l~~~a~~l~~~~-~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt 138 (393)
.+++..+...+..+.+|.+ ++||.-....|.++ ...+++.+.+.. ..+-++.+..|.++..|....+++.+.. .
T Consensus 131 ~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~--~ 208 (311)
T PF06258_consen 131 AEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKD--N 208 (311)
T ss_pred HHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcC--C
Confidence 3344556667777778865 56887766666655 445666665432 2334666677888877766555554421 1
Q ss_pred CCccccCCCCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 139 EDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 139 ~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
+.+. + +.. -..+....-+..||.|++-+- |..++ -.|. -.|+.|.++...
T Consensus 209 ~~~~------~------~~~-~~~nPy~~~La~ad~i~VT~D----SvSMv----sEA~-~tG~pV~v~~l~ 258 (311)
T PF06258_consen 209 PGVY------I------WDG-TGENPYLGFLAAADAIVVTED----SVSMV----SEAA-ATGKPVYVLPLP 258 (311)
T ss_pred CceE------E------ecC-CCCCcHHHHHHhCCEEEEcCc----cHHHH----HHHH-HcCCCEEEecCC
Confidence 1110 0 000 012333344688999887653 33433 4555 368889888763
No 207
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=31.79 E-value=62 Score=25.54 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=26.9
Q ss_pred CEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCC
Q psy14128 173 DLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 211 (393)
Q Consensus 173 D~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~ 211 (393)
.-+|++|. +++...|++... +.|++|.+++|..
T Consensus 8 ~~vlVvGg-----G~va~~k~~~Ll-~~gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGG-----GPVAARKARLLL-EAGAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEE-----SHHHHHHHHHHC-CCTBEEEEEESSE
T ss_pred CEEEEECC-----CHHHHHHHHHHH-hCCCEEEEECCch
Confidence 45788987 788888898886 6899999999963
No 208
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=31.28 E-value=1.3e+02 Score=31.27 Aligned_cols=117 Identities=19% Similarity=0.118 Sum_probs=63.3
Q ss_pred eeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHH-HHHHHHHHHHhCCCCccccCCCCccc-hhhhhhhcccCCCC-
Q psy14128 89 SRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEA-MVALKDLLNKLGSEDLYTEYAFPLEG-AGTDLRANYLLNNK- 165 (393)
Q Consensus 89 ~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~-~~~~~k~~~~lGt~nid~~~~~~~~~-~~~~~~~~~~~~~~- 165 (393)
+.++.+++..+.+++.+.-++.+.-.++++.....-- --.+++|+.+.+.+..-..-+-...+ ....+..+|....+
T Consensus 188 ~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~ 267 (557)
T COG3961 188 KTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLSE 267 (557)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhcCCCeEEeecccccccccCCCeeeEEecccCC
Confidence 4467777777777776655555665566554332211 12457888887755443211000000 00122234433333
Q ss_pred --c-cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 166 --I-AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 166 --~-~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
. +-+|.||+||.+|.-..+..+-.+. .+. +-.+++-++|.
T Consensus 268 ~~vre~vE~aD~il~iG~~ltD~~Tg~Ft---~~~--~~~~~i~~~~~ 310 (557)
T COG3961 268 PEVREAVESADLILTIGVLLTDFNTGGFT---YQY--KPANIIEIHPD 310 (557)
T ss_pred HHHHHHhhcCCEEEEeceEEeecccccee---eec--CcccEEEeccC
Confidence 2 2369999999999987766654332 222 34678888884
No 209
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=31.26 E-value=54 Score=28.80 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCCEEEEcCcccc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLS 257 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~ 257 (393)
..+++.+.+||+|++++|..+..
T Consensus 25 ~~aa~~i~kAKrPllvvGp~vl~ 47 (167)
T PF02552_consen 25 EVAAKMIKKAKRPLLVVGPLVLW 47 (167)
T ss_dssp HHHHHHHHHSSSEEEEE-STT--
T ss_pred HHHHHHHHhcCCCEEEeCCcccc
Confidence 45889999999999999998875
No 210
>PRK07064 hypothetical protein; Provisional
Probab=31.16 E-value=81 Score=32.92 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.++|+|+|++|.++.. ....+..|++ +|+-+
T Consensus 194 ~~~~~~l~~AkrPvi~~G~g~~~------a~~~l~~lae-~~~pv 231 (544)
T PRK07064 194 AELAERLAAARRPLLWLGGGARH------AGAEVKRLVD-LGFGV 231 (544)
T ss_pred HHHHHHHHhCCCCEEEECCChHh------HHHHHHHHHH-cCCCE
Confidence 44788999999999999998751 2346777888 87544
No 211
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=30.80 E-value=58 Score=26.89 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=24.7
Q ss_pred ccccCE-EEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 169 AEEADL-ILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 169 ie~AD~-IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
+..+++ |+++|.++ .....+++++..+. +.+..|+.|.+.
T Consensus 68 i~~s~~~IVLig~~T-~~s~wV~~EI~~A~-~~~~~Ii~V~~~ 108 (130)
T PF08937_consen 68 IKNSSVTIVLIGPNT-AKSKWVNWEIEYAL-KKGKPIIGVYLP 108 (130)
T ss_dssp HHTEEEEEEE--TT-----HHHHHHHHHHT-TT---EEEEETT
T ss_pred HhcCCEEEEEeCCCc-ccCcHHHHHHHHHH-HCCCCEEEEECC
Confidence 677777 55566655 77899999999997 589999999874
No 212
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=30.63 E-value=58 Score=34.23 Aligned_cols=108 Identities=13% Similarity=0.038 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccHH-HHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC-CC-
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLADA-EAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL-NN- 164 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~-E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~-~~- 164 (393)
++.+.+..+++.|.+ +++-.+++|..... .....+.+|+..+|.+-+..-. .++..+ .-+...++. +.
T Consensus 196 ~~~~~i~~~~~~L~~----AkrPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~h--p~~~G~~g~~~~~ 269 (564)
T PRK08155 196 FDEESIRDAAAMINA----AKRPVLYLGGGVINSGAPARARELAEKAQLPTTMTLMALGMLPKAH--PLSLGMLGMHGAR 269 (564)
T ss_pred CCHHHHHHHHHHHHh----CCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcccccccCCCCC--hhhccCCCCCCCH
Confidence 445566666666643 23334444433221 2234567788888866443211 111100 001111111 11
Q ss_pred Cc-cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 165 KI-AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 165 ~~-~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
.. .-++++|+||.+|+....-.+....+ . .+..++|.||.
T Consensus 270 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~----~-~~~~~~I~id~ 310 (564)
T PRK08155 270 STNYILQEADLLIVLGARFDDRAIGKTEQ----F-CPNAKIIHVDI 310 (564)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCCHhh----c-CCCCeEEEEEC
Confidence 11 23688999999998765443211111 1 24578998887
No 213
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=30.60 E-value=55 Score=32.34 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=29.4
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
..+++.+|++|++|+..... |.... ... +. +++++++|++.
T Consensus 200 ~~~~~~aDllLVIGTSL~V~-Paa~l-~~~-a~-~~~pvviIN~e 240 (349)
T PTZ00410 200 HHDIPEAELLLIIGTSLQVH-PFALL-ACV-VP-KDVPRVLFNLE 240 (349)
T ss_pred HHHHHhCCEEEEECcCCccc-CHHHH-HHH-Hh-cCCCEEEECcc
Confidence 34678899999999977655 75533 233 33 57999999983
No 214
>PRK15482 transcriptional regulator MurR; Provisional
Probab=30.36 E-value=2.3e+02 Score=26.69 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=25.0
Q ss_pred CccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 168 GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 168 ~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
.+..-|+++++.. ...+..++ .-++.+. ++|++++.|-.
T Consensus 179 ~~~~~Dv~i~iS~-sg~t~~~~-~~~~~a~-~~g~~iI~IT~ 217 (285)
T PRK15482 179 ALKKGDVQIAISY-SGSKKEIV-LCAEAAR-KQGATVIAITS 217 (285)
T ss_pred cCCCCCEEEEEeC-CCCCHHHH-HHHHHHH-HCCCEEEEEeC
Confidence 3456699888865 44333333 3355554 57999998865
No 215
>PRK13936 phosphoheptose isomerase; Provisional
Probab=29.50 E-value=3.6e+02 Score=23.99 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=23.4
Q ss_pred cccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 170 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 170 e~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
..-|+++.+....++ +-+-.-++.+. ++|++++.|..
T Consensus 110 ~~~Dv~i~iS~sG~t--~~~~~~~~~ak-~~g~~iI~IT~ 146 (197)
T PRK13936 110 QPGDVLLAISTSGNS--ANVIQAIQAAH-EREMHVVALTG 146 (197)
T ss_pred CCCCEEEEEeCCCCc--HHHHHHHHHHH-HCCCeEEEEEC
Confidence 466888888764443 32333345554 57999999865
No 216
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=29.47 E-value=4.1e+02 Score=24.29 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=30.8
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
..++..-|+++++...-+...|+=..+.- |.+|++||++-.
T Consensus 99 ~~~i~~~DVliviSnSGrNpvpie~A~~~---rekGa~vI~vTS 139 (243)
T COG4821 99 RLQIRPNDVLIVISNSGRNPVPIEVAEYA---REKGAKVIAVTS 139 (243)
T ss_pred HhcCCCCCEEEEEeCCCCCCcchHHHHHH---HhcCCeEEEEeh
Confidence 45678889999998877777887544332 257999999976
No 217
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=29.06 E-value=62 Score=33.95 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC-CCC
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL-NNK 165 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~-~~~ 165 (393)
+..+.+..+++.|.+ +++..+++|.... -+....+.+|+..+|.+-+..-. .++.. ..-+...++. +..
T Consensus 186 ~~~~~i~~~~~~L~~----AkrPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~~~kg~~~e~--hp~~~G~~g~~~~~ 259 (558)
T TIGR00118 186 GHPLQIKKAAELINL----AKKPVILVGGGVIIAGASEELKELAERIQIPVTTTLMGLGSFPED--HPLSLGMLGMHGTK 259 (558)
T ss_pred CCHHHHHHHHHHHHh----CCCcEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCC--CccccCCCCCCCCH
Confidence 345667777777754 2344444443222 12234567888888865443211 11100 0000111111 111
Q ss_pred --ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 166 --IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 166 --~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
-.-++++|+||.+|+...+-.+. +. .+ . ..+.+++.||.
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~~~~~~-~~--~~-~-~~~~~~i~id~ 300 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFDDRVTG-NL--AK-F-APNAKIIHIDI 300 (558)
T ss_pred HHHHHHHhCCEEEEECCCCCccccC-ch--hh-c-CCCCcEEEEeC
Confidence 22368899999999876443221 11 11 1 23568988886
No 218
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=29.04 E-value=63 Score=34.10 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccCCC--
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLLNN-- 164 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~~~-- 164 (393)
++.+++..+++.|.+ ++...+++|.... .+....+++|+..+|.+-+.+.. .++..+ .-+...++...
T Consensus 181 ~~~~~i~~~~~~L~~----A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~p~~h--p~~~G~~g~~g~~ 254 (579)
T TIGR03457 181 GGATSLAQAARLLAE----AKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASH--PLWVGPLGYQGSK 254 (579)
T ss_pred CCHHHHHHHHHHHHh----CCCCEEEECcCccccChHHHHHHHHHHhCCCEEEcccccccCCCCC--chhccCCcCcchH
Confidence 455667777776654 2333344433322 22234567888888865443211 111100 00011111111
Q ss_pred -CccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 165 -KIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 165 -~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
...-++++|+||.+|+.......+-.... ..+..++++|.||.
T Consensus 255 ~~~~~l~~aDlil~lG~~~~~~~~~~~~~~--~~~~~~~~~I~id~ 298 (579)
T TIGR03457 255 AAMKLISDADVVLALGTRLGPFGTLPQYGI--DYWPKNAKIIQVDA 298 (579)
T ss_pred HHHHHHHhCCEEEEECCCCccccccccccc--ccCCCCCeEEEEeC
Confidence 12336899999999987543211100000 11234689999986
No 219
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=28.62 E-value=60 Score=33.84 Aligned_cols=110 Identities=22% Similarity=0.142 Sum_probs=55.8
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccc-c---CCCCccchhhhhhhcccCC-
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYT-E---YAFPLEGAGTDLRANYLLN- 163 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~-~---~~~~~~~~~~~~~~~~~~~- 163 (393)
.+..+++..+++.|.+ +++..+++|.... -+....+.+|+..+|.+-+.. . ..++... .-+...+...
T Consensus 190 ~~~~~~~~~~~~~L~~----AkrPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~~kg~~~~~h--p~~~G~~g~~~ 263 (530)
T PRK07092 190 RPDPAALARLGDALDA----ARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPEDH--PLFAGFLPASR 263 (530)
T ss_pred CCCHHHHHHHHHHHHc----CCCcEEEECCCcchhhhHHHHHHHHHHHCCcEEEecCCCcCcCCCCC--ccccCcCCccH
Confidence 3567778888877754 3444555554333 233446789999999765422 1 1111100 0011111111
Q ss_pred -CCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 164 -NKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 164 -~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
....-++++|+||.+|++....... .. ... ..+..+++.||.
T Consensus 264 ~~~~~~l~~aDlvl~lG~~~~~~~~~-~~--~~~-~~~~~~~i~id~ 306 (530)
T PRK07092 264 EKISALLDGHDLVLVIGAPVFTYHVE-GP--GPH-LPEGAELVQLTD 306 (530)
T ss_pred HHHHHHHhhCCEEEEECCcccccccC-Cc--ccc-CCCCCeEEEEeC
Confidence 1123468999999999864222111 00 011 124678888886
No 220
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=27.01 E-value=84 Score=30.70 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=57.6
Q ss_pred CCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCCCccC-ccccCEEEEecCCcCccccH
Q psy14128 110 ESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAG-AEEADLILLIGTNPRFEAPL 188 (393)
Q Consensus 110 ~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~-ie~AD~IL~iG~n~~~~~p~ 188 (393)
+..+|+++-++...+.. |.++.||.+.+.+...-. ..........|. . +++ +++||+|.+-.+-+.+++-+
T Consensus 146 gktvGIiG~GrIG~avA----~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~--~-l~ell~~sDii~l~~Plt~~T~hL 217 (324)
T COG1052 146 GKTLGIIGLGRIGQAVA----RRLKGFGMKVLYYDRSPN-PEAEKELGARYV--D-LDELLAESDIISLHCPLTPETRHL 217 (324)
T ss_pred CCEEEEECCCHHHHHHH----HHHhcCCCEEEEECCCCC-hHHHhhcCceec--c-HHHHHHhCCEEEEeCCCChHHhhh
Confidence 46788888887775543 334478877666543211 000111111222 2 444 69999999999988888899
Q ss_pred HHHHHHHhhhcCCceEEEEc
Q psy14128 189 FNARIRKGYLTNELDVAYIG 208 (393)
Q Consensus 189 l~~rlr~a~~~~gakiivi~ 208 (393)
+|.+.-++. ++|+-+|.++
T Consensus 218 in~~~l~~m-k~ga~lVNta 236 (324)
T COG1052 218 INAEELAKM-KPGAILVNTA 236 (324)
T ss_pred cCHHHHHhC-CCCeEEEECC
Confidence 998888776 5787777665
No 221
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=26.90 E-value=67 Score=36.65 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=30.8
Q ss_pred CCCCcEEEEEccCCCcchhhh---hhhHhhhhhcCCcEEEEEcCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLF---NARIRKGYLTNELDVAYIGPKV 43 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~pll---n~RiRk~~~~~~~~v~~ig~~~ 43 (393)
++++|++|++|+||-.-.+.+ ..++.++-.++|+++.+|.|..
T Consensus 283 ~~~a~~il~~G~Np~~s~~~~~~~~~~l~~ar~~gg~k~VVVDPr~ 328 (1031)
T PRK14991 283 WDNVEFALFIGTSPAQSGNPFKRQARQLANARTRGNFEYVVVAPAL 328 (1031)
T ss_pred hhcCcEEEEeCcChhHhCCchHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 478999999999997654333 2236665543458999999954
No 222
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=26.80 E-value=4.1e+02 Score=22.85 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCCCccCccc
Q psy14128 92 DGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEE 171 (393)
Q Consensus 92 ~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~ 171 (393)
+.+.+..+++.|.+ ++.|-+++.+....-..+...||. .+|.+-... .+ .....+..
T Consensus 16 ~~~~~~~~~~~l~~----a~~I~i~G~G~S~~~A~~~~~~l~-~~g~~~~~~----------~~--------~~~~~~~~ 72 (179)
T TIGR03127 16 DEEELDKLADKIIK----AKRIFVAGAGRSGLVGKAFAMRLM-HLGFNVYVV----------GE--------TTTPSIKK 72 (179)
T ss_pred CHHHHHHHHHHHHh----CCEEEEEecCHHHHHHHHHHHHHH-hCCCeEEEe----------CC--------cccCCCCC
Confidence 34567777776643 356766665544332333334443 244211100 00 01234566
Q ss_pred cCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 172 ADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 172 AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
-|+++++.. ..++ +-+-.-++.+. ++|++++.|-.
T Consensus 73 ~Dv~I~iS~-sG~t-~~~i~~~~~ak-~~g~~ii~IT~ 107 (179)
T TIGR03127 73 GDLLIAISG-SGET-ESLVTVAKKAK-EIGATVAAITT 107 (179)
T ss_pred CCEEEEEeC-CCCc-HHHHHHHHHHH-HCCCeEEEEEC
Confidence 788888864 3333 33333355664 58999998854
No 223
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=26.72 E-value=65 Score=33.71 Aligned_cols=36 Identities=17% Similarity=-0.016 Sum_probs=21.8
Q ss_pred ccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 169 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 169 ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
++++|+||.+|+...+-...... .. ....++|.||.
T Consensus 266 l~~aDliL~iG~~l~~~~~~~~~----~~-~~~~~~I~id~ 301 (535)
T TIGR03394 266 VEESDGLLLLGVILSDTNFAVSQ----RK-IDLRRTIHAFD 301 (535)
T ss_pred HHhCCEEEEECCccccccccccc----cc-CCCCcEEEEeC
Confidence 67899999999876543221110 11 12468888876
No 224
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export.
Probab=26.65 E-value=52 Score=36.42 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=29.4
Q ss_pred CCCCcEEEEEccCCCcchhhh--hhhH---h---hhhhc--------CCcEEEEEcCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLF--NARI---R---KGYLT--------NELDVAYIGPKV 43 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~pll--n~Ri---R---k~~~~--------~~~~v~~ig~~~ 43 (393)
+|++|+++++|+|+-..+|.+ ++.+ | ++-++ .+++|.+|.|..
T Consensus 218 ~~~Ad~iv~~G~Np~et~~~~~~~~~~~~~~~~~~ak~~~~~~g~~~~~~kiIvIDPr~ 276 (806)
T TIGR02693 218 ARLADTIVLWGANSYETQTNYFLNHWLPNLQGATVAKKKQAFPGEPAEPGYLIVVDPRR 276 (806)
T ss_pred HHhCCEEEEECCChHHhhhhhhHhhhhhhhhHHHHhhhhhcccccccCCceEEEEcCCC
Confidence 478999999999999998863 3321 1 11111 247999999943
No 225
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=26.63 E-value=55 Score=33.18 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=22.1
Q ss_pred ccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 171 EADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 171 ~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
++|+||.+|+..... +.... + ..++.++|.||..
T Consensus 274 ~aDlvl~lG~~~~~~-~~~~~-~----~~~~~~~i~vd~d 307 (432)
T TIGR00173 274 QPDLVIRFGGPPVSK-RLRQW-L----ARQPAEYWVVDPD 307 (432)
T ss_pred CCCEEEEeCCCcchh-HHHHH-H----hCCCCcEEEECCC
Confidence 899999999875332 22222 1 1235789999873
No 226
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=26.40 E-value=2.4e+02 Score=26.38 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=25.2
Q ss_pred CccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 168 GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 168 ~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
.+..-|+++++....+ . +-+..-++.+. ++|++|++|-.
T Consensus 172 ~~~~~Dv~I~iS~sg~-~-~~~~~~~~~ak-~~ga~iI~IT~ 210 (278)
T PRK11557 172 ALSPDDLLLAISYSGE-R-RELNLAADEAL-RVGAKVLAITG 210 (278)
T ss_pred hCCCCCEEEEEcCCCC-C-HHHHHHHHHHH-HcCCCEEEEcC
Confidence 4566788888854333 2 33333456665 58999999976
No 227
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=25.98 E-value=78 Score=33.35 Aligned_cols=104 Identities=21% Similarity=0.161 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhccCCCceEEEcC-cccHHHHHHHHHHHHHHhCCCCccccCC---CCccchhhhhhhcccCCC---Cc
Q psy14128 94 AAVLALVQQLAAKVTCESDVAGVVG-SLADAEAMVALKDLLNKLGSEDLYTEYA---FPLEGAGTDLRANYLLNN---KI 166 (393)
Q Consensus 94 ~al~~~a~~l~~~~~g~~sv~~l~g-~~~t~E~~~~~~k~~~~lGt~nid~~~~---~~~~~~~~~~~~~~~~~~---~~ 166 (393)
++|..+++.|.+. ++-.+++| +-...+..-.+++|+..+|.+-+.+-.+ ++..+ ...+. ..++.. ..
T Consensus 188 ~~i~~aa~~L~~A----krPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~~p~~h-p~~lG-~~g~~g~~~a~ 261 (550)
T COG0028 188 EAIRKAAELLAEA----KRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDH-PLSLG-MLGMHGTKAAN 261 (550)
T ss_pred HHHHHHHHHHHhC----CCCEEEECCCccccccHHHHHHHHHHHCCCEEEccCcCccCCCCC-ccccc-cccccccHHHH
Confidence 7788888877653 23334333 2222233345678888888665443111 11110 00011 111111 12
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
..+++||+||.+|+...+-.+. ...-. .+.. |+.||.
T Consensus 262 ~~~~~aDlll~vG~rf~~~~~~----~~~f~-~~~~-ii~iDi 298 (550)
T COG0028 262 EALEEADLLLAVGARFDDRVTG----YSGFA-PPAA-IIHIDI 298 (550)
T ss_pred HHhhcCCEEEEecCCCcccccc----hhhhC-CcCC-EEEEeC
Confidence 3368899999999987655554 11111 1223 888876
No 228
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=25.82 E-value=80 Score=33.20 Aligned_cols=108 Identities=15% Similarity=0.077 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccHH-HHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC-CC-
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLADA-EAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL-NN- 164 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~-E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~-~~- 164 (393)
++.+++..+++.|.+. ++..+++|..... +....+.+|+..+|.+-+..-. .++..+ ...+ ..++. +.
T Consensus 192 ~~~~~i~~~a~~L~~A----krPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~h-pl~~-G~~g~~~~~ 265 (561)
T PRK06048 192 GNPQQIKRAAELIMKA----ERPIIYAGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPTEH-PLSL-GMLGMHGTK 265 (561)
T ss_pred CCHHHHHHHHHHHHhC----CCCEEEECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCC-cccc-CCCCCCCCH
Confidence 4667788888877642 3444444433321 2234567888888866543211 111000 0001 11111 11
Q ss_pred -CccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 165 -KIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 165 -~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
.-.-++++|+||++|+......+.-.. . . ..+.++|.||.
T Consensus 266 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~---~-~-~~~~~~I~id~ 306 (561)
T PRK06048 266 YANYAIQESDLIIAVGARFDDRVTGKLA---S-F-APNAKIIHIDI 306 (561)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChh---h-c-CCCCeEEEEEC
Confidence 122468999999999986543321111 1 1 24578998886
No 229
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=25.61 E-value=85 Score=32.22 Aligned_cols=36 Identities=28% Similarity=0.262 Sum_probs=22.2
Q ss_pred ccccCEEEEecCCcCccccHHHHHHHHhhh-cCCceEEEEcC
Q psy14128 169 AEEADLILLIGTNPRFEAPLFNARIRKGYL-TNELDVAYIGP 209 (393)
Q Consensus 169 ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~-~~gakiivi~p 209 (393)
.++||+|+-||+-...=-+ .-|+.+ +.+.|++.++-
T Consensus 293 A~~ADlVigiGTR~~DFTT-----gS~alF~~~~~k~l~lNV 329 (617)
T COG3962 293 AEEADLVIGIGTRLQDFTT-----GSKALFKNPGVKFLNLNV 329 (617)
T ss_pred hhhcCEEEEeccccccccc-----ccHHHhcCCCceEEEeec
Confidence 5899999999985432111 123333 35778887775
No 230
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=25.53 E-value=81 Score=33.05 Aligned_cols=108 Identities=17% Similarity=0.110 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCCCccCc
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGA 169 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~i 169 (393)
+..+.+..+++.|.+. ++-.++.|.... .+....+.+|+..+|.+-+.+-.+-...+....+ +.....-.-+
T Consensus 191 ~~~~~~~~~~~~L~~A----krPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~---~~g~~~~~~~ 263 (554)
T TIGR03254 191 PSPDSVDRAVELLKDA----KRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTHPQ---SAAAARSFAL 263 (554)
T ss_pred CCHHHHHHHHHHHHhC----CCCEEEECCCccccChHHHHHHHHHHHCCCEEEcCCcceeCCCCCch---hhhHHHHHHH
Confidence 4567788888777543 233344433222 1233456788888886644321110000000000 0001111236
Q ss_pred cccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 170 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 170 e~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
++||+||.+|+....-.+.-+. ... ..++++|.||.
T Consensus 264 ~~aDlvl~lG~~~~~~~~~~~~---~~~-~~~~~vI~id~ 299 (554)
T TIGR03254 264 AEADVVMLVGARLNWLLSHGKG---KLW-GEDAKFIQVDI 299 (554)
T ss_pred hcCCEEEEECCCCchhhccCch---hhc-CCCCcEEEcCC
Confidence 8999999999875432221110 011 23678988876
No 231
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=25.38 E-value=3e+02 Score=25.72 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=25.0
Q ss_pred ccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 169 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 169 ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
+..-|+++++....++.. +..-++.+. ++|++++.|..
T Consensus 173 ~~~~D~vI~iS~sG~t~~--~~~~~~~ak-~~g~~vI~IT~ 210 (284)
T PRK11302 173 SSDGDVVVLISHTGRTKS--LVELAQLAR-ENGATVIAITS 210 (284)
T ss_pred CCCCCEEEEEeCCCCCHH--HHHHHHHHH-HcCCeEEEECC
Confidence 456789888865444332 333355554 68999999976
No 232
>PRK08617 acetolactate synthase; Reviewed
Probab=25.29 E-value=75 Score=33.26 Aligned_cols=108 Identities=17% Similarity=0.113 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhccc-CCCC
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYL-LNNK 165 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~-~~~~ 165 (393)
+..+.+..+++.|.+ +++..+++|.... .+....+.+|+..+|.+-+.+-. .++..+. .-+...++ ....
T Consensus 186 ~~~~~i~~~~~~L~~----AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~gkg~~~~~hp-~~~~G~~g~~~~~ 260 (552)
T PRK08617 186 ASPEDINYLAELIKN----AKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVETFQAAGVISRELE-DHFFGRVGLFRNQ 260 (552)
T ss_pred CCHHHHHHHHHHHHh----CCCCEEEECCCcchhhHHHHHHHHHHHhCCCEEeccccCccCCCCCc-hhhccCCcCCCcH
Confidence 355667777776654 2444455544332 23345667888888866443211 1111000 00111111 1111
Q ss_pred --ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 166 --IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 166 --~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
..-++++|+||.+|+....-.+..+ .. ....|++.||.
T Consensus 261 ~~~~~~~~aDlvl~lG~~~~~~~~~~~-----~~-~~~~~~i~id~ 300 (552)
T PRK08617 261 PGDELLKKADLVITIGYDPIEYEPRNW-----NS-EGDATIIHIDV 300 (552)
T ss_pred HHHHHHHhCCEEEEecCcccccccccc-----cc-CCCCcEEEEeC
Confidence 1236899999999987643322111 11 12468998886
No 233
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=25.14 E-value=83 Score=33.14 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=54.3
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCCCccC
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAG 168 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (393)
.+..+.+..+++.|.+. +.-.+++|.... .+....+.+|+..+|.+-+.+-.+-...+....+ +.....-.-
T Consensus 197 ~~~~~~l~~~~~~L~~A----krPvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl---~~G~~~~~~ 269 (569)
T PRK09259 197 LPAPEAVDRALDLLKKA----KRPLIILGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQ---SAAAARSLA 269 (569)
T ss_pred CCCHHHHHHHHHHHHhC----CCCEEEECcCccccChHHHHHHHHHHHCCCEEecccccccCCCCChh---hhhHHHHHH
Confidence 45667788888877652 333344443222 2334566789998997655331110000000000 000001123
Q ss_pred ccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 169 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 169 ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
+++||+||.+|+....-.+.-+. ... ..+.|++.||.
T Consensus 270 l~~aDlvl~lG~~~~~~~~~~~~---~~~-~~~~~ii~Id~ 306 (569)
T PRK09259 270 LANADVVLLVGARLNWLLSHGKG---KTW-GADKKFIQIDI 306 (569)
T ss_pred HhcCCEEEEeCCCCchhcccCch---hcc-CCCCcEEEecC
Confidence 68999999999876432211110 111 23578998876
No 234
>PRK07586 hypothetical protein; Validated
Probab=25.12 E-value=76 Score=32.88 Aligned_cols=88 Identities=20% Similarity=0.253 Sum_probs=43.7
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhh----cccCCC
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRA----NYLLNN 164 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~----~~~~~~ 164 (393)
.++.+++..+++.|.+. ++-.+++|.... -+....+.+|+..+|.+-+.......+. ..++... .+....
T Consensus 181 ~~~~~~v~~~~~~L~~A----~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~-~gkg~~~~~~~~~~~~~ 255 (514)
T PRK07586 181 AVDPAAVEAAAAALRSG----EPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARME-RGAGRPAVERLPYFAEQ 255 (514)
T ss_pred CCCHHHHHHHHHHHHhc----CCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccc-cCCCCCCcccccchHHH
Confidence 46677888888877653 333344443332 2333456788888887644211000000 0000000 000001
Q ss_pred CccCccccCEEEEecCCc
Q psy14128 165 KIAGAEEADLILLIGTNP 182 (393)
Q Consensus 165 ~~~~ie~AD~IL~iG~n~ 182 (393)
...-+++||+||.+|+..
T Consensus 256 ~~~~~~~aDlvl~vG~~~ 273 (514)
T PRK07586 256 ALAQLAGVRHLVLVGAKA 273 (514)
T ss_pred HHHHHhcCCEEEEECCCC
Confidence 123368899999999864
No 235
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.09 E-value=3.6e+02 Score=21.53 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=26.1
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
...+..-|+++++.. ..++..++ .-++++. ++|++++.|-.
T Consensus 42 ~~~~~~~d~vi~iS~-sG~t~~~~-~~~~~a~-~~g~~vi~iT~ 82 (128)
T cd05014 42 LGMVTPGDVVIAISN-SGETDELL-NLLPHLK-RRGAPIIAITG 82 (128)
T ss_pred cCcCCCCCEEEEEeC-CCCCHHHH-HHHHHHH-HCCCeEEEEeC
Confidence 344567788888864 44333333 3356664 57999998866
No 236
>PRK11269 glyoxylate carboligase; Provisional
Probab=24.86 E-value=85 Score=33.26 Aligned_cols=110 Identities=15% Similarity=0.050 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccHH-HHHHHHHHHHHHhCCCCccccCCCCccchhhh-hhhcccCC--CC-
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLADA-EAMVALKDLLNKLGSEDLYTEYAFPLEGAGTD-LRANYLLN--NK- 165 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~-E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~-~~~~~~~~--~~- 165 (393)
+..+.+..+++.|.+. ++-.+++|..... +....+.+|+..+|.+-+..-.+-...+.... +...+++. ..
T Consensus 188 ~~~~~i~~~~~~L~~A----krPvil~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~ 263 (591)
T PRK11269 188 ATRAQIEKALEMLNAA----ERPLIVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIPDDHPLMAGMVGLQTSHRY 263 (591)
T ss_pred CCHHHHHHHHHHHHhC----CCcEEEECCCCcccCHHHHHHHHHHHhCCCeEecccccCcCCCCChhhccCCcCCCCcHH
Confidence 4667777777777542 3334554443322 23345678888888765532111000000000 01111211 11
Q ss_pred -ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 166 -IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 166 -~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
..-++++|+||.+|+...+-.+. +. . .. .++.++|.||.
T Consensus 264 ~~~~~~~aDlvl~lG~~~~~~~~~-~~--~-~~-~~~~~~i~Vd~ 303 (591)
T PRK11269 264 GNATLLASDFVLGIGNRWANRHTG-SV--E-VY-TKGRKFVHVDI 303 (591)
T ss_pred HHHHHHhCCEEEEeCCCCCccccC-ch--h-hc-CCCCeEEEeeC
Confidence 22368999999999875543321 11 1 11 34678998885
No 237
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=24.56 E-value=82 Score=33.04 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=56.1
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCccc-HHHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC-C-
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLA-DAEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL-N- 163 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~-t~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~-~- 163 (393)
.++.+.+..+++.|.+. ++-.++.|... .-+....+.+|+..+|.+-+..-. .++..+ .-+....+. +
T Consensus 188 ~~~~~~i~~~~~~L~~A----~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~h--p~~~G~~g~~~~ 261 (557)
T PRK08199 188 APGAADLARLAELLARA----ERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNRH--PNYAGDLGLGIN 261 (557)
T ss_pred CCCHHHHHHHHHHHHhC----CCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCCcCCCCCCCC--hhhccCCcCcCC
Confidence 35667788888877542 33344444332 223345668999999976553211 111110 000011111 1
Q ss_pred -CCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 164 -NKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 164 -~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
....-++++|+||.+|+....-.+.....+.+. ....+++.||.
T Consensus 262 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~--~~~~~~i~vd~ 306 (557)
T PRK08199 262 PALAARIREADLVLAVGTRLGEVTTQGYTLLDIP--VPRQTLVHVHP 306 (557)
T ss_pred HHHHHHHHhCCEEEEeCCCCcccccccccccccc--CCCCeEEEEeC
Confidence 112336899999999987533222111111111 13568988886
No 238
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=24.20 E-value=89 Score=27.33 Aligned_cols=91 Identities=10% Similarity=-0.049 Sum_probs=53.0
Q ss_pred CCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCCCccC-ccccCEEEEecCCcCccccH
Q psy14128 110 ESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAG-AEEADLILLIGTNPRFEAPL 188 (393)
Q Consensus 110 ~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~-ie~AD~IL~iG~n~~~~~p~ 188 (393)
+..+|+++-+....+-. +.++.||.+-+.+.+... ....+........++++ ++.+|+|.+--+-+.++.-+
T Consensus 36 g~tvgIiG~G~IG~~vA----~~l~~fG~~V~~~d~~~~---~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~l 108 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVA----RRLKAFGMRVIGYDRSPK---PEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGL 108 (178)
T ss_dssp TSEEEEESTSHHHHHHH----HHHHHTT-EEEEEESSCH---HHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTS
T ss_pred CCEEEEEEEcCCcCeEe----eeeecCCceeEEecccCC---hhhhcccccceeeehhhhcchhhhhhhhhcccccccee
Confidence 46688887777665433 455678864443332110 01111111111224555 48899999998877777888
Q ss_pred HHHHHHHhhhcCCceEEEEc
Q psy14128 189 FNARIRKGYLTNELDVAYIG 208 (393)
Q Consensus 189 l~~rlr~a~~~~gakiivi~ 208 (393)
++.+.-++. ++|+.+|.++
T Consensus 109 i~~~~l~~m-k~ga~lvN~a 127 (178)
T PF02826_consen 109 INAEFLAKM-KPGAVLVNVA 127 (178)
T ss_dssp BSHHHHHTS-TTTEEEEESS
T ss_pred eeeeeeecc-ccceEEEecc
Confidence 888877776 5798777776
No 239
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=23.84 E-value=2.5e+02 Score=29.51 Aligned_cols=102 Identities=17% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCc-cccCCCCccchhhhhhhcccCC----CCccCccccCE
Q psy14128 100 VQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDL-YTEYAFPLEGAGTDLRANYLLN----NKIAGAEEADL 174 (393)
Q Consensus 100 a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~ni-d~~~~~~~~~~~~~~~~~~~~~----~~~~~ie~AD~ 174 (393)
.+++.+.... ++-.+++|....... ..+.+|++++|.+-+ .......+.....-+...+... .....++++|+
T Consensus 212 ~~~~~~~l~~-krPvii~G~g~~~~~-~~l~~lae~~g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~ 289 (568)
T PRK07449 212 SQRDWDIWRQ-KRGVVIAGRLSAEEG-QAIAALAQLLGWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDI 289 (568)
T ss_pred chhhhhhhcc-CCeEEEECCCChHHH-HHHHHHHHHCCCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCE
Q ss_pred EEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 175 ILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 175 IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
||.+|+......+..+.. ....+++.||.
T Consensus 290 vl~vG~~l~~~~~~~~~~------~~~~~~i~id~ 318 (568)
T PRK07449 290 VIQFGSPPTSKRLLQWLA------DCEPEYWVVDP 318 (568)
T ss_pred EEEeCCCCCchhHHHHHh------cCCCCEEEECC
No 240
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=23.81 E-value=97 Score=35.76 Aligned_cols=55 Identities=11% Similarity=0.039 Sum_probs=48.6
Q ss_pred HHHHHHHHHh-----CCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccc
Q psy14128 234 SHAFSKKLAA-----AKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLI 289 (393)
Q Consensus 234 ~~~~a~~l~~-----a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~ 289 (393)
+.++|+.|+. .++++|++|+|+.+..++.....++.+|+.+|| .++..++|.++.
T Consensus 518 I~~lAreyA~na~~t~g~s~I~~G~Ginh~~hgd~~~Rai~~L~~LTG-niG~~GgG~~~y 577 (1235)
T TIGR01580 518 IIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLILCG-CVGQSGGGWAHY 577 (1235)
T ss_pred HHHHHHHHHhcccccCCceEEEeCcccchhhhchHHHHHHHHHHHHhc-cCCCCCCCCccc
Confidence 5668888887 689999999999999999999999999999999 688888876653
No 241
>PRK06154 hypothetical protein; Provisional
Probab=23.54 E-value=93 Score=32.79 Aligned_cols=107 Identities=19% Similarity=0.038 Sum_probs=55.9
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccCCCC
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLLNNK 165 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~~~~ 165 (393)
.+..+.+..+++.|.+ +++-.+++|.... -+....+.+|+..+|.+-+.+-. .++..+ .-+....+....
T Consensus 198 ~~~~~~i~~aa~~L~~----A~rPvil~G~g~~~~~a~~~l~~lae~l~~PV~tt~~gkg~~~~~h--pl~~G~~g~~~~ 271 (565)
T PRK06154 198 GADPVEVVEAAALLLA----AERPVIYAGQGVLYAQATPELKELAELLEIPVMTTLNGKSAFPEDH--PLALGSGGRARP 271 (565)
T ss_pred CCCHHHHHHHHHHHHh----CCCCEEEECCCccccChHHHHHHHHHHhCCCEEECCCcccCCCCCC--ccccCCCCCCCc
Confidence 4566778888887754 2333444443332 22334567899989876553311 111100 000111111111
Q ss_pred ---ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 166 ---IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 166 ---~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
..-+++||+||++|+...... . . ... ..++++|.||.
T Consensus 272 ~~~~~~~~~aDlvL~lG~~l~~~~-~-~----~~~-~~~~~vI~id~ 311 (565)
T PRK06154 272 ATVAHFLREADVLFGIGCSLTRSY-Y-G----LPM-PEGKTIIHSTL 311 (565)
T ss_pred HHHHHHHHhCCEEEEECCCCcccc-c-C----ccC-CCCCeEEEEEC
Confidence 123789999999998865421 1 1 112 34678988876
No 242
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=23.33 E-value=59 Score=30.47 Aligned_cols=101 Identities=24% Similarity=0.369 Sum_probs=48.7
Q ss_pred CceeeeChHHHHHHHHHHHHHhccCCC-ceEEEcCc---ccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhh---
Q psy14128 85 ADMLSRSDGAAVLALVQQLAAKVTCES-DVAGVVGS---LADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLR--- 157 (393)
Q Consensus 85 ~~~~~~~~~~al~~~a~~l~~~~~g~~-sv~~l~g~---~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~--- 157 (393)
+...-.+|+.++..+++.+... ..++ .+--+.|+ ......+....+|++++|.+...... |........+
T Consensus 53 ~~~iGv~wG~Tl~~~~~~l~~~-~~~~~~vV~l~Gg~~~~~~~~~~~i~~~lA~~~g~~~~~l~a--P~~~~s~~~~~~l 129 (255)
T PF04198_consen 53 GDVIGVGWGRTLYAVANHLPPK-SLPNVTVVPLIGGVGNSNSYQANEIARRLAEKLGGKYYFLPA--PAFVDSPELRDAL 129 (255)
T ss_dssp TEEEEE-TSHHHHHHHHTS--S-SSSCEEEEESBSBTTTSSGGSHHHHHHHHHHHHTSEEE---S--BSB-SSHHHHHHH
T ss_pred CCEEEEcchHHHHHHHHhcCcc-CCCCcEEEECCCCCCCCCCcCHHHHHHHHHHHhCCcEEEEeC--CccCCCHHHHHHH
Confidence 5567789999999999988652 2222 22222221 22244566778999999865333211 1111111121
Q ss_pred -hcccCCCCccCccccCEEEE-ecCCcCccccHH
Q psy14128 158 -ANYLLNNKIAGAEEADLILL-IGTNPRFEAPLF 189 (393)
Q Consensus 158 -~~~~~~~~~~~ie~AD~IL~-iG~n~~~~~p~l 189 (393)
........++-.+++|+.|+ +|+ +....+++
T Consensus 130 ~~~~~i~~~l~~~~~~dial~giG~-~~~~~~~~ 162 (255)
T PF04198_consen 130 LAEPSIREVLDLARKADIALVGIGS-PSSDSTLY 162 (255)
T ss_dssp HTSHHHHHHHHHHCT-SEEEEEEEE-HHHHHHHC
T ss_pred HhChHHHHHHHHHHhCCEEEEecCC-CCCcchHH
Confidence 11111222445688998544 665 44444444
No 243
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.98 E-value=96 Score=32.84 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC-CCC-
Q psy14128 92 DGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL-NNK- 165 (393)
Q Consensus 92 ~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~-~~~- 165 (393)
+.+.+..+++.|.+. ++-.+++|.... .+..-.+.+|+..+|.+-+.+-. -++..+ .-+...++. +..
T Consensus 207 ~~~~i~~~~~~L~~A----krPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~~~h--pl~~G~~G~~~~~~ 280 (587)
T PRK06965 207 HSGQIRKAVSLLLSA----KRPYIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASD--KKFLGMLGMHGTYE 280 (587)
T ss_pred CHHHHHHHHHHHHhc----CCCEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCC--hhhcCCCCCCCCHH
Confidence 567788888877642 333344443332 23334567888888866443211 111100 001111111 111
Q ss_pred -ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 166 -IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 166 -~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
..-+++||+||.+|+....-.+ .+.. ....+..|+|.||.
T Consensus 281 a~~~~~~aDlvl~lG~~~~~~~~-~~~~---~~~~~~~~~i~id~ 321 (587)
T PRK06965 281 ANMAMQHCDVLIAIGARFDDRVI-GNPA---HFASRPRKIIHIDI 321 (587)
T ss_pred HHHHHHhCCEEEEECCCCccccc-CChh---hcCCCCceEEEEeC
Confidence 2346889999999987543321 1110 11123578999986
No 244
>PRK07064 hypothetical protein; Provisional
Probab=22.93 E-value=2.5e+02 Score=29.26 Aligned_cols=108 Identities=20% Similarity=0.179 Sum_probs=52.7
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchh-hhhhhcccCCCCc-c
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAG-TDLRANYLLNNKI-A 167 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~-~~~~~~~~~~~~~-~ 167 (393)
.+..+.+..+++.|.+ +++-.++.|.... +..-.+.+|+. +|.+-+..-..-...+.. .-+...+..+... .
T Consensus 187 ~~~~~~i~~~~~~l~~----AkrPvi~~G~g~~-~a~~~l~~lae-~~~pv~~t~~~kg~~~~~hp~~~G~~~~~~~~~~ 260 (544)
T PRK07064 187 EPDAAAVAELAERLAA----ARRPLLWLGGGAR-HAGAEVKRLVD-LGFGVVTSTQGRGVVPEDHPASLGAFNNSAAVEA 260 (544)
T ss_pred CCCHHHHHHHHHHHHh----CCCCEEEECCChH-hHHHHHHHHHH-cCCCEEEccCccccCCCCChhhcccCCCCHHHHH
Confidence 3566778877777754 2344445444332 22235678999 997654331111000000 0011111111111 2
Q ss_pred CccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 168 GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 168 ~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
-++++|+||.+|+....-.+. .+ .. ....+++.||.
T Consensus 261 ~~~~aDlvl~iG~~~~~~~~~-~~----~~-~~~~~~i~id~ 296 (544)
T PRK07064 261 LYKTCDLLLVVGSRLRGNETL-KY----SL-ALPRPLIRVDA 296 (544)
T ss_pred HHHhCCEEEEecCCCCccccc-cc----cc-CCCCceEEEeC
Confidence 257899999999976543221 11 11 12357888875
No 245
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=22.78 E-value=94 Score=32.87 Aligned_cols=108 Identities=13% Similarity=0.027 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC-CC-
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL-NN- 164 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~-~~- 164 (393)
+..+.+..+++.|.+ +++..+++|.... -+....+.+|+..+|.+-+.+-. .++..+ .-+...++. ..
T Consensus 188 ~~~~~i~~~~~~L~~----AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~~p~~h--p~~~G~~G~~~~~ 261 (586)
T PRK06276 188 GHPLQIKKAAELIAE----AERPVILAGGGVIISGASEELIELSELVKIPVCTTLMGKGAFPEDH--PLALGMVGMHGTK 261 (586)
T ss_pred CCHHHHHHHHHHHHc----CCCeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCCCCccCCCCC--cccccCCCCCCCH
Confidence 356677777777754 2344455443321 12233567888888866543211 111100 000111111 11
Q ss_pred -CccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 165 -KIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 165 -~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
...-++++|+||.+|+...+....-.. .. ..+.+++.||.
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~----~~-~~~~~~i~id~ 302 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFSDRTTGDIS----SF-APNAKIIHIDI 302 (586)
T ss_pred HHHHHHHcCCEEEEECCCCCccccCCcc----cc-CCCCeEEEEEC
Confidence 123478999999999875432221010 11 24568888876
No 246
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.63 E-value=96 Score=32.68 Aligned_cols=108 Identities=21% Similarity=0.139 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC-C--
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL-N-- 163 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~-~-- 163 (393)
++.+++..+++.|.+. +...+++|.... ....-.+.+|+.++|.+-+..-. .++..+ .. +...++. .
T Consensus 191 ~~~~~i~~a~~~L~~A----~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~h-p~-~~G~~G~~~~~ 264 (574)
T PRK07979 191 GHKGQIKRALQTLVAA----KKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATH-RQ-SLGMLGMHGTY 264 (574)
T ss_pred CCHHHHHHHHHHHHcC----CCCEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCC-cc-cccCCcCCCCH
Confidence 4677788888888642 334444443332 22234567899999976553311 111110 00 0111111 1
Q ss_pred CCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 164 NKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 164 ~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
...+.+++||+||.+|+...+-.+.... .. ...++++.||.
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~----~~-~~~~~~i~id~ 305 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDRTTNNLA----KY-CPNATVLHIDI 305 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccCChh----hc-CCCCeEEEEEC
Confidence 1123468999999999875443321111 11 23578999987
No 247
>PRK12474 hypothetical protein; Provisional
Probab=22.52 E-value=92 Score=32.38 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=44.4
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccCC--CCccchhhhhhh--c--ccC
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYA--FPLEGAGTDLRA--N--YLL 162 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~~--~~~~~~~~~~~~--~--~~~ 162 (393)
.++.+++..+++.|.+. ++-.+++|+... .+....+.+|+..+|.+-+..-.. ..++ ++... . +..
T Consensus 185 ~~~~~~i~~~~~~L~~A----~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~g---kg~~~~~~~~~~~ 257 (518)
T PRK12474 185 PVAAETVERIAALLRNG----KKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERG---AGRVPIERIPYFH 257 (518)
T ss_pred CCCHHHHHHHHHHHHcC----CCcEEEECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCC---CCCCCCcccccch
Confidence 35677888888888653 333344444332 223345678999999764421000 0000 00000 0 000
Q ss_pred CCCccCccccCEEEEecCCc
Q psy14128 163 NNKIAGAEEADLILLIGTNP 182 (393)
Q Consensus 163 ~~~~~~ie~AD~IL~iG~n~ 182 (393)
.....-+++||+||.+|+..
T Consensus 258 ~~~~~~~~~aDlvl~lG~~~ 277 (518)
T PRK12474 258 EQITAFLKDVEQLVLVGAKP 277 (518)
T ss_pred HHHHHHHhhCCEEEEECCCC
Confidence 00112368999999999874
No 248
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=22.32 E-value=1e+02 Score=32.56 Aligned_cols=109 Identities=17% Similarity=0.014 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcc-cHHHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC--CC
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSL-ADAEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL--NN 164 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~-~t~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~--~~ 164 (393)
+..+.+..+++.|.+ +++-.+++|.. ..-+....+.+|+..+|.+-+.+.. .++..+ .. +...++. +.
T Consensus 198 ~~~~~i~~~~~~L~~----AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~kg~~p~~h-p~-~~G~~g~~~~~ 271 (578)
T PRK06112 198 PAPQRLAEAASLLAQ----AQRPVVVAGGGVHISGASAALAALQSLAGLPVATTNMGKGAVDETH-PL-SLGVVGSLMGP 271 (578)
T ss_pred CCHHHHHHHHHHHHc----CCCcEEEECCCccccchHHHHHHHHHHhCCCEEEcccccccCCCCC-cc-ccccccccCCC
Confidence 556677777776653 23334444422 2223334567888888866443211 111110 00 0011111 10
Q ss_pred ------CccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 165 ------KIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 165 ------~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
...-++++|+||.+|+...+-.+. ++ . . .....+++.||+.
T Consensus 272 ~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~-~~--~-~-~~~~~~~i~id~d 318 (578)
T PRK06112 272 RSPGRHLRDLVREADVVLLVGTRTNQNGTD-SW--S-L-YPEQAQYIHIDVD 318 (578)
T ss_pred ccchHHHHHHHHhCCEEEEECCCCCccccc-cc--c-c-cCCCCeEEEEECC
Confidence 123367899999999876543321 11 1 1 1245789999873
No 249
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=22.15 E-value=90 Score=32.90 Aligned_cols=106 Identities=20% Similarity=0.134 Sum_probs=56.3
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCCCccC
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAG 168 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (393)
.++.+.+..+++.|.+. ++..++.|+... -+....+.+|++.+|.+-+-+-.+....+ .+.. .+.....-..
T Consensus 204 ~~~~~~~~~~~~~L~~A----krPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~--~~hp-~~~G~~~~~~ 276 (569)
T PRK08327 204 APDPEDIARAAEMLAAA----ERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAGEVVNYP--SDHP-LHLGPDPRAD 276 (569)
T ss_pred CCCHHHHHHHHHHHHhC----CCCEEEEecccCCcccHHHHHHHHHHhCCCEEecCCCceeCC--CCCc-cccccccchh
Confidence 45677888888888652 344455443332 23345678999999976543211100000 0000 0111112233
Q ss_pred ccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 169 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 169 ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
++++|+||.+|+........ .+ ..+..+++.||.
T Consensus 277 ~~~aDlvl~lG~~l~~~~~~----~~---~~~~~~vi~Id~ 310 (569)
T PRK08327 277 LAEADLVLVVDSDVPWIPKK----IR---PDADARVIQIDV 310 (569)
T ss_pred hhhCCEEEEeCCCCCCcccc----cc---CCCCCeEEEEeC
Confidence 68999999999875322111 11 124578988886
No 250
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=22.09 E-value=1.7e+02 Score=25.43 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=28.1
Q ss_pred HHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhC
Q psy14128 237 FSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVT 276 (393)
Q Consensus 237 ~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg 276 (393)
++..+.+||+|+.|+|..... +++.+.+..|.+.-.
T Consensus 28 ~ammIkkAkrPLlivGp~~~d----ee~~E~~vKi~ekfn 63 (170)
T COG1880 28 VAMMIKKAKRPLLIVGPLALD----EELLELAVKIIEKFN 63 (170)
T ss_pred HHHHHHhcCCceEEecccccC----HHHHHHHHHHHHhcC
Confidence 577889999999999987773 467777777776643
No 251
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=21.92 E-value=1e+02 Score=32.75 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccHH-HHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC-CC-
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLADA-EAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL-NN- 164 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~-E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~-~~- 164 (393)
+..+.+..+++.|.+ ++...+++|..... +..-.+.+|+..+|.+-+..-. .++..+ .-+...++. +.
T Consensus 216 p~~~~i~~~~~~L~~----AkrPlIl~G~g~~~~~a~~~l~~lae~l~~PV~tt~~~kg~~p~~h--pl~~G~~G~~~~~ 289 (612)
T PRK07789 216 PHGKQIREAAKLIAA----ARRPVLYVGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSH--PQHLGMPGMHGTV 289 (612)
T ss_pred CCHHHHHHHHHHHHh----CCCCEEEECCCccccCHHHHHHHHHHHHCCCEEEcccccccCCCCC--hhhccCCcccCcH
Confidence 456667777777754 23334444443322 2334567888888865443211 111100 000011111 11
Q ss_pred -CccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 165 -KIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 165 -~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
...-++++|+||.+|+......+- .... . .+.+++|.||.
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~---~~~~-~-~~~~~~i~Id~ 330 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTG---KLDS-F-APDAKVIHADI 330 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccC---Chhh-c-CCCCcEEEEEC
Confidence 123468899999999865432210 0111 1 24578988886
No 252
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=21.82 E-value=1.1e+02 Score=32.13 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=54.5
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcc-cHHHHHHHHHHHHHHhCCCCccccCC---CCccchhhhhhhcccC-CC
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSL-ADAEAMVALKDLLNKLGSEDLYTEYA---FPLEGAGTDLRANYLL-NN 164 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~-~t~E~~~~~~k~~~~lGt~nid~~~~---~~~~~~~~~~~~~~~~-~~ 164 (393)
.++.+.+..+++.|.+. ++..+++|.. ...+....+.+|+..+|.+-+-+-.. ++..+ .-+...++. +.
T Consensus 180 ~~~~~~l~~~~~~L~~A----krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~h--p~~~G~~g~~~~ 253 (548)
T PRK08978 180 AFPAAELEQARALLAQA----KKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKGLGAVEADH--PYYLGMLGMHGT 253 (548)
T ss_pred CCCHHHHHHHHHHHHcC----CCCEEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCC--ccccCCCCCCCC
Confidence 35677788888777542 3334444432 22223345678888888764432111 11100 000111111 11
Q ss_pred C--ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 165 K--IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 165 ~--~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
. ..-++++|+||.+|+......+ .. .. .. ....++|.||+
T Consensus 254 ~~~~~~l~~aD~vl~lG~~~~~~~~--~~-~~-~~-~~~~~~i~id~ 295 (548)
T PRK08978 254 KAANLAVQECDLLIAVGARFDDRVT--GK-LN-TF-APHAKVIHLDI 295 (548)
T ss_pred HHHHHHHHhCCEEEEEcCCCCcccc--CC-cc-cc-CCCCeEEEEEC
Confidence 1 1235789999999987544221 10 11 11 24568999986
No 253
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=21.66 E-value=1e+02 Score=32.56 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccCCCC-
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLLNNK- 165 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~~~~- 165 (393)
++.+.+..+++.|.+ ++...++.|.... .+....+.+|+..+|.+-+.+.. .++..+ .. +...++...+
T Consensus 185 ~~~~~i~~a~~~L~~----A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~p~~h-pl-~~G~~g~~g~~ 258 (588)
T PRK07525 185 GGEQSLAEAAELLSE----AKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYLHNDAFPGSH-PL-WVGPLGYNGSK 258 (588)
T ss_pred CCHHHHHHHHHHHHh----CCCCEEEECCCccccChHHHHHHHHHHhCCCeEEcccccccCCCCC-cc-ccccCcccCcH
Confidence 466778888887754 3444455444332 23345567899888866543211 111110 00 0011111111
Q ss_pred --ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 166 --IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 166 --~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
..-+++||+||++|+........-... .....+++++|.||.
T Consensus 259 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~--~~~~~~~~~iI~Id~ 302 (588)
T PRK07525 259 AAMELIAKADVVLALGTRLNPFGTLPQYG--IDYWPKDAKIIQVDI 302 (588)
T ss_pred HHHHHHHhCCEEEEECCCCchhhcccccc--cccCCCCCeEEEEEC
Confidence 123689999999998654321110000 001124689999986
No 254
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.41 E-value=1.1e+02 Score=32.31 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccHH-HHHHHHHHHHHHhCCCCccccCCCCccchhhhh-hhcccC-CC--C
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLADA-EAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDL-RANYLL-NN--K 165 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~-E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~-~~~~~~-~~--~ 165 (393)
++.+++..+++.|.+ +++..+++|..... .....+.+|+..+|.+-+.+-......+....+ ...++. +. .
T Consensus 188 ~~~~~i~~~~~~L~~----A~rPviv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~ 263 (563)
T PRK08527 188 GNSRQIKKAAEAIKE----AKKPLFYLGGGAILSNASEEIRELVKKTGIPAVETLMARGVLRSDDPLLLGMLGMHGSYAA 263 (563)
T ss_pred CCHHHHHHHHHHHHc----CCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCChhhcCCCcccCCHHH
Confidence 456778888877754 34444555443332 234466889998997655331110000000011 111111 11 1
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
-.-+++||+||.+|+...+-.+-- . .. . .+..+++.||.
T Consensus 264 ~~~l~~aD~vl~lG~~l~~~~~~~-~--~~-~-~~~~~~i~id~ 302 (563)
T PRK08527 264 NMAMSECDLLISLGARFDDRVTGK-L--SE-F-AKHAKIIHVDI 302 (563)
T ss_pred HHHHHhCCEEEEeCCCCCccccCC-h--hh-c-CCCCeEEEEEC
Confidence 223689999999998764332211 1 11 1 23568888886
No 255
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.38 E-value=1.1e+02 Score=32.29 Aligned_cols=109 Identities=17% Similarity=0.087 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEcCcccHH-HHHHHHHHHHHHhCCCCccccCCCCccchhhh-hhhcccCCC---Cc
Q psy14128 92 DGAAVLALVQQLAAKVTCESDVAGVVGSLADA-EAMVALKDLLNKLGSEDLYTEYAFPLEGAGTD-LRANYLLNN---KI 166 (393)
Q Consensus 92 ~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~-E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~-~~~~~~~~~---~~ 166 (393)
..+.+..+++.|.+. +.-.+++|..... +....+.+|+..+|.+-+.+-.+....+.... +...++... ..
T Consensus 192 ~~~~i~~~~~~l~~A----~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~ 267 (574)
T PRK06882 192 HKGQIKKALKALLVA----KKPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTYEAN 267 (574)
T ss_pred CHHHHHHHHHHHHhC----CCCEEEECCCccccchHHHHHHHHHHhCCCEEEcCccCcCCCCCChhhcCCCcccccHHHH
Confidence 456677777666542 3333444432221 22335678888888664433111000000000 011111111 12
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
.-++++|+||.+|+....-.+. +. .. . ...+++|.||.
T Consensus 268 ~~l~~aDlvl~lG~~~~~~~~~-~~-~~--~-~~~~~~I~id~ 305 (574)
T PRK06882 268 NAMHESDLILGIGVRFDDRTTN-NL-AK--Y-CPNAKVIHIDI 305 (574)
T ss_pred HHHHhCCEEEEECCCCCccccC-ch-hh--c-CCCCeEEEEEC
Confidence 2467999999999875433321 11 11 1 24578999986
No 256
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.38 E-value=1.1e+02 Score=32.41 Aligned_cols=109 Identities=12% Similarity=0.039 Sum_probs=55.3
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccHH-HHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC--C
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLADA-EAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL--N 163 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~-E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~--~ 163 (393)
.++.+++..+++.|.+ ++...+++|..... .....+.+|+..+|.+-+.+-. .++..+ .-+...++. +
T Consensus 198 ~~~~~~~~~~~~~L~~----A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~~kg~~p~~h--p~~~G~~G~~~~ 271 (570)
T PRK06725 198 RPDSMKLREVAKAISK----AKRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLMGLGAYPPGD--PLFLGMLGMHGT 271 (570)
T ss_pred CCCHHHHHHHHHHHHc----CCCcEEEECCCccccchHHHHHHHHHHhCCCEEECCccCcCCCCCC--hhhcCCCCCCCC
Confidence 3567778888887764 23444554443322 2334567888888866443211 111110 001111111 1
Q ss_pred C-CccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 164 N-KIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 164 ~-~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
. .-..+++||+||.+|+...+..+.. . ... ...++++.||.
T Consensus 272 ~~~~~~l~~aDlil~vG~~~~~~~~~~-~---~~~-~~~~~~i~id~ 313 (570)
T PRK06725 272 YAANMAVTECDLLLALGVRFDDRVTGK-L---ELF-SPHSKKVHIDI 313 (570)
T ss_pred HHHHHHHHhCCEEEEeCCCCCccccCc-c---ccc-CCCCeEEEEeC
Confidence 1 1234789999999998754332211 1 111 23568888886
No 257
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.00 E-value=1.1e+02 Score=32.17 Aligned_cols=108 Identities=21% Similarity=0.093 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC-CC-
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL-NN- 164 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~-~~- 164 (393)
++.+++..+++.|.+ ++.-.+++|.... ....-.+.+|+..+|.+-+.+-. .++..+ .-+...++. +.
T Consensus 191 ~~~~~i~~~~~~L~~----A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~h--p~~~G~~G~~~~~ 264 (572)
T PRK08979 191 GHKGQIKRGLQALLA----AKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPGTH--KNSLGMLGMHGRY 264 (572)
T ss_pred CCHHHHHHHHHHHHh----CCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcccccccCCCCC--cccccCCccCCCH
Confidence 356678888877754 2344444443332 12223457888888876553311 111100 001111111 11
Q ss_pred -CccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 165 -KIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 165 -~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
...-+++||+||.+|+...+-.+.-.. . . ..+.|+|.||.
T Consensus 265 ~~~~~~~~aD~vl~vG~~~~~~~~~~~~---~-~-~~~~~~i~id~ 305 (572)
T PRK08979 265 EANMAMHNADLIFGIGVRFDDRTTNNLE---K-Y-CPNATILHIDI 305 (572)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCchh---h-c-CCCCeEEEEEC
Confidence 123468999999999876443321111 1 1 23578998886
No 258
>KOG1467|consensus
Probab=20.65 E-value=1.6e+02 Score=30.38 Aligned_cols=44 Identities=14% Similarity=0.332 Sum_probs=31.1
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhh-cCCceEEEEcCCCCcc
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYL-TNELDVAYIGPKVDLR 214 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~-~~gakiivi~p~~~~~ 214 (393)
.+.|++-|+||..|+ .++++.=+..|.. .+..+|+|||.|..+.
T Consensus 354 ~~KI~dgdviltyg~-----s~vV~~ill~A~~~~k~frVvVVDSRP~~E 398 (556)
T KOG1467|consen 354 VTKIQDGDVLLTYGS-----SSVVNMILLEAKELGKKFRVVVVDSRPNLE 398 (556)
T ss_pred HHHhhcCCEEEEecc-----hHHHHHHHHHHHHhCcceEEEEEeCCCCcc
Confidence 456899999999998 4555555544432 3467899999876553
No 259
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=20.62 E-value=1e+02 Score=32.66 Aligned_cols=108 Identities=19% Similarity=0.108 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC--CC
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL--NN 164 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~--~~ 164 (393)
+..+++..+++.|.+. ++-.+++|.... .+....+.+|+..+|.+-+.+-. -++..+ .. +...++. +.
T Consensus 187 ~~~~~i~~~~~~L~~A----krPvIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~h-pl-~~G~~g~~~~~ 260 (588)
T TIGR01504 187 ATRAQIEKAVEMLNAA----ERPLIVAGGGVINADAADLLQEFAELTGVPVIPTLMGWGCIPDDH-EL-MAGMVGLQTSH 260 (588)
T ss_pred CCHHHHHHHHHHHHhC----CCcEEEECCCcchhhhHHHHHHHHHHhCCCeEEcCccCCCCCCCC-hh-hCcCCCCCCCc
Confidence 4677888888887642 344455544332 23345678999999977554311 111110 00 1111221 11
Q ss_pred C--ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 165 K--IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 165 ~--~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
. ..-+++||+||++|+...+.... +. ... ..+.++|.||.
T Consensus 261 ~~a~~~l~~aD~iL~lG~~l~~~~t~-~~---~~~-~~~~~~I~id~ 302 (588)
T TIGR01504 261 RYGNATLLESDFVFGIGNRWANRHTG-SV---DVY-TEGRKFVHVDI 302 (588)
T ss_pred HHHHHHHHhCCEEEEECCCCCccccC-cc---ccc-CCCCeEEEeeC
Confidence 1 12368899999999876443221 11 111 24678998886
No 260
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=20.59 E-value=1.2e+02 Score=31.77 Aligned_cols=108 Identities=20% Similarity=0.123 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC-CC-
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL-NN- 164 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~-~~- 164 (393)
+..+++..+++.|.+. ++-.+++|.... -+....+.+|+..+|.+-+.+-. .++...... +....+. +.
T Consensus 180 ~~~~~i~~~~~~l~~A----~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~i~~~~~~~-~~G~~G~~~~~ 254 (539)
T TIGR02418 180 APDDAIDEVAEAIQNA----KLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQGAGAVSRELEDH-FFGRVGLFRNQ 254 (539)
T ss_pred CCHHHHHHHHHHHHcC----CCCEEEECCCcCcccHHHHHHHHHHHhCCCEEEccccCcCCCCCCChh-hcccCcCCCcH
Confidence 4556787777777542 333445443332 23344667899999976553311 111100000 1111111 11
Q ss_pred -CccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 165 -KIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 165 -~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
...-+++||+||.+|++...-.+..+ .. ....+++.||.
T Consensus 255 ~~~~~~~~aDlvl~lG~~~~~~~~~~~-----~~-~~~~~~i~id~ 294 (539)
T TIGR02418 255 PGDRLLKQADLVITIGYDPIEYEPRNW-----NS-ENDATIVHIDV 294 (539)
T ss_pred HHHHHHHhCCEEEEecCcccccCcccc-----Cc-CCCCeEEEEeC
Confidence 12346899999999988643332111 11 23468998887
No 261
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=20.46 E-value=1.1e+02 Score=32.39 Aligned_cols=108 Identities=13% Similarity=-0.002 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccHH-HHHHHHHHHHHHhCCCCccccC---CCCccchhhhhhhcccC-CCC
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLADA-EAMVALKDLLNKLGSEDLYTEY---AFPLEGAGTDLRANYLL-NNK 165 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~-E~~~~~~k~~~~lGt~nid~~~---~~~~~~~~~~~~~~~~~-~~~ 165 (393)
+..+.+..+++.|.+ +++..+++|..... ...-.+++|+..+|.+-+.+-. -++..+ .-+...++. +..
T Consensus 202 ~~~~~v~~a~~~L~~----AkrPvil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~~kg~~~~~h--pl~~G~~G~~~~~ 275 (585)
T CHL00099 202 PTIKRIEQAAKLILQ----SSQPLLYVGGGAIISDAHQEITELAELYKIPVTTTLMGKGIFDEDH--PLCLGMLGMHGTA 275 (585)
T ss_pred CCHHHHHHHHHHHHc----CCCcEEEECCCCchhchHHHHHHHHHHHCCCEEEccccCcCCCCCC--CcccCCCCCCCCH
Confidence 456677777777753 34444555544432 2334567888888876543311 111100 000111111 111
Q ss_pred --ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 166 --IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 166 --~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
..-+++||+||.+|+......+.- . . .. .++.++|.||.
T Consensus 276 ~~~~~l~~aDlvL~lG~~~~~~~~~~-~--~-~~-~~~~~~i~id~ 316 (585)
T CHL00099 276 YANFAVSECDLLIALGARFDDRVTGK-L--D-EF-ACNAQVIHIDI 316 (585)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCC-H--h-Hc-CCCCeEEEEEC
Confidence 223689999999998754432211 1 1 11 24678998886
No 262
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=20.33 E-value=1.2e+02 Score=32.03 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEcCcccH-HHHHHHHHHHHHHhCCCCccccCCCCccchhhhh-hhcccC-CC--C
Q psy14128 91 SDGAAVLALVQQLAAKVTCESDVAGVVGSLAD-AEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDL-RANYLL-NN--K 165 (393)
Q Consensus 91 ~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t-~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~-~~~~~~-~~--~ 165 (393)
+..+.+..+++.|.+ +++-.+++|.... -+....+.+|+..+|.+-+..-..-...+....+ ...++. +. .
T Consensus 195 ~~~~~i~~~~~~L~~----A~rPvil~G~g~~~~~a~~~l~~lae~l~~pv~tt~~gkg~ip~~hpl~~G~~G~~~~~~~ 270 (566)
T PRK07282 195 PNDMQIKKILKQLSK----AKKPVILAGGGINYAEAATELNAFAERYQIPVVTTLLGQGTIATSHPLFLGMGGMHGSYAA 270 (566)
T ss_pred CCHHHHHHHHHHHHc----CCCcEEEECCCcCcccHHHHHHHHHHHhCCCEEeccccCCCCCCCChhhcCCCCCCCCHHH
Confidence 456678888887754 2334444443332 1223356788888886644331111110000001 111111 11 1
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
..-+++||+||.+|+...+-.+-... .. ....++|.||.
T Consensus 271 ~~~~~~aD~vl~lG~~l~~~~~~~~~----~~-~~~~~~i~id~ 309 (566)
T PRK07282 271 NIAMTEADFMINIGSRFDDRLTGNPK----TF-AKNAKVAHIDI 309 (566)
T ss_pred HHHHHhCCEEEEECCCCCccccCChh----hc-CCCCeEEEEEC
Confidence 23468999999999986543321111 11 23568998886
Done!