Query psy14128
Match_columns 393
No_of_seqs 285 out of 1739
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 20:15:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iv2_X Formate dehydrogenase H 100.0 3.4E-35 1.2E-39 313.1 20.7 295 67-367 49-495 (715)
2 3ml1_A NAPA, periplasmic nitra 100.0 4.1E-35 1.4E-39 315.1 20.5 292 67-362 61-545 (802)
3 3i9v_3 NADH-quinone oxidoreduc 100.0 3E-34 1E-38 307.7 14.7 284 67-368 298-655 (783)
4 2nap_A Protein (periplasmic ni 100.0 4.2E-33 1.4E-37 297.4 22.6 292 67-362 54-507 (723)
5 2e7z_A Acetylene hydratase AHY 100.0 3.2E-33 1.1E-37 298.5 18.6 289 67-362 50-504 (727)
6 4aay_A AROA; oxidoreductase, r 100.0 7.5E-32 2.6E-36 290.5 18.3 285 73-361 121-605 (845)
7 2vpz_A Thiosulfate reductase; 100.0 2.6E-31 9E-36 285.1 19.6 289 67-364 86-533 (765)
8 1kqf_A FDH-N alpha, formate de 100.0 4.9E-31 1.7E-35 290.1 21.0 218 67-285 99-441 (1015)
9 1h0h_A Formate dehydrogenase ( 100.0 8.6E-31 2.9E-35 287.2 20.1 217 67-285 61-402 (977)
10 1g8k_A Arsenite oxidase; molyb 100.0 1.4E-29 4.6E-34 273.8 19.2 283 73-357 117-574 (825)
11 1eu1_A Dimethyl sulfoxide redu 100.0 2.4E-29 8.3E-34 270.4 16.2 288 67-361 46-523 (780)
12 1tmo_A TMAO reductase, trimeth 100.0 5.6E-29 1.9E-33 269.2 17.1 288 67-361 79-563 (829)
13 2ivf_A Ethylbenzene dehydrogen 100.0 2.2E-28 7.5E-33 268.3 15.9 221 62-287 127-479 (976)
14 1ti6_A Pyrogallol hydroxytrans 99.9 2E-27 6.8E-32 258.4 11.3 215 67-285 67-385 (875)
15 1q16_A Respiratory nitrate red 99.9 2.6E-24 9E-29 237.5 22.1 150 62-214 93-288 (1247)
16 2iv2_X Formate dehydrogenase H 97.4 0.0015 5E-08 69.2 13.7 42 1-43 164-205 (715)
17 3i9v_3 NADH-quinone oxidoreduc 97.3 0.00011 3.8E-09 78.6 4.2 92 1-93 390-517 (783)
18 2e7z_A Acetylene hydratase AHY 96.3 0.0048 1.6E-07 65.3 6.8 45 1-46 158-203 (727)
19 2nap_A Protein (periplasmic ni 96.2 0.0076 2.6E-07 63.7 7.9 43 1-43 164-207 (723)
20 2vpz_A Thiosulfate reductase; 95.8 0.017 5.7E-07 61.5 8.1 45 1-46 197-242 (765)
21 3ml1_A NAPA, periplasmic nitra 92.3 0.095 3.2E-06 56.1 4.5 44 1-44 176-220 (802)
22 1kqf_A FDH-N alpha, formate de 92.1 0.071 2.4E-06 58.6 3.3 43 1-43 220-262 (1015)
23 1h0h_A Formate dehydrogenase ( 90.4 0.22 7.4E-06 54.5 5.0 42 1-43 182-223 (977)
24 2ivf_A Ethylbenzene dehydrogen 88.4 0.3 1E-05 53.3 4.2 45 1-46 244-288 (976)
25 1ti6_A Pyrogallol hydroxytrans 86.7 0.22 7.5E-06 53.7 1.8 41 2-43 207-252 (875)
26 1eu1_A Dimethyl sulfoxide redu 84.4 0.26 8.7E-06 52.5 1.0 41 2-43 176-224 (780)
27 1tmo_A TMAO reductase, trimeth 83.2 0.29 1E-05 52.4 0.8 42 2-43 209-261 (829)
28 1q16_A Respiratory nitrate red 79.8 0.88 3E-05 50.8 3.1 53 234-287 519-576 (1247)
29 3cf4_G Acetyl-COA decarboxylas 79.3 3.4 0.00011 34.9 6.0 40 236-279 26-65 (170)
30 1g8k_A Arsenite oxidase; molyb 79.2 0.72 2.5E-05 49.3 2.1 46 1-46 222-283 (825)
31 1s5p_A NAD-dependent deacetyla 56.5 8.1 0.00028 34.5 3.6 59 2-63 166-227 (235)
32 1s5p_A NAD-dependent deacetyla 54.4 9.8 0.00033 34.0 3.8 41 167-210 163-203 (235)
33 1ytl_A Acetyl-COA decarboxylas 53.4 13 0.00044 31.6 4.2 37 235-277 25-62 (174)
34 3cf4_G Acetyl-COA decarboxylas 53.3 7.9 0.00027 32.6 2.9 39 167-211 103-143 (170)
35 1ozh_A ALS, acetolactate synth 52.7 27 0.00091 35.2 7.2 40 236-279 199-238 (566)
36 4aay_A AROA; oxidoreductase, r 52.7 4.5 0.00015 43.4 1.4 43 1-43 226-284 (845)
37 1m2k_A Silent information regu 52.1 13 0.00045 33.4 4.3 37 2-41 176-212 (249)
38 3u31_A SIR2A, transcriptional 52.0 11 0.00038 34.8 3.9 41 167-210 212-252 (290)
39 4feg_A Pyruvate oxidase; carba 50.4 25 0.00084 35.8 6.6 38 236-279 204-241 (603)
40 3riy_A NAD-dependent deacetyla 48.4 12 0.00042 34.2 3.5 41 167-210 208-248 (273)
41 1ybh_A Acetolactate synthase, 48.1 38 0.0013 34.3 7.5 39 235-279 205-243 (590)
42 1yc5_A NAD-dependent deacetyla 47.8 12 0.00042 33.5 3.4 37 2-41 179-215 (246)
43 3etn_A Putative phosphosugar i 47.8 1.3E+02 0.0045 25.8 10.2 100 93-209 41-143 (220)
44 3k35_A NAD-dependent deacetyla 47.0 20 0.00068 33.6 4.7 59 2-63 205-266 (318)
45 3eya_A Pyruvate dehydrogenase 46.2 35 0.0012 34.2 6.9 103 90-209 185-293 (549)
46 1ma3_A SIR2-AF2, transcription 46.1 12 0.00042 33.7 3.1 37 2-41 182-218 (253)
47 4feg_A Pyruvate oxidase; carba 45.8 57 0.002 33.1 8.5 107 90-210 196-308 (603)
48 2pan_A Glyoxylate carboligase; 44.9 28 0.00097 35.4 6.0 41 235-279 217-257 (616)
49 1eiw_A Hypothetical protein MT 44.8 30 0.001 27.0 4.8 44 167-211 34-77 (111)
50 1ybh_A Acetolactate synthase, 44.5 44 0.0015 33.8 7.4 109 92-210 200-312 (590)
51 1t9b_A Acetolactate synthase, 43.1 50 0.0017 34.2 7.6 43 234-279 279-321 (677)
52 1m2k_A Silent information regu 41.2 22 0.00077 31.9 4.1 41 167-210 173-213 (249)
53 2pgn_A Cyclohexane-1,2-dione h 41.2 35 0.0012 34.5 6.0 41 235-279 196-236 (589)
54 3pki_A NAD-dependent deacetyla 41.1 21 0.00071 33.9 3.9 59 2-63 205-266 (355)
55 3k35_A NAD-dependent deacetyla 38.6 30 0.001 32.3 4.6 41 167-210 202-242 (318)
56 3riy_A NAD-dependent deacetyla 38.4 21 0.00073 32.5 3.5 57 2-62 211-271 (273)
57 3hyn_A Putative signal transdu 37.9 35 0.0012 29.3 4.4 42 169-211 77-119 (189)
58 3eya_A Pyruvate dehydrogenase 37.9 48 0.0016 33.2 6.3 38 236-279 193-230 (549)
59 2iht_A Carboxyethylarginine sy 37.8 31 0.0011 34.8 4.9 41 235-279 207-247 (573)
60 1ma3_A SIR2-AF2, transcription 37.2 23 0.0008 31.8 3.5 41 167-210 179-219 (253)
61 3uk7_A Class I glutamine amido 36.9 2.7E+02 0.0092 26.1 13.2 199 2-209 88-322 (396)
62 1yc5_A NAD-dependent deacetyla 36.8 21 0.00072 31.9 3.1 41 167-210 176-216 (246)
63 1v5e_A Pyruvate oxidase; oxido 35.3 78 0.0027 32.0 7.5 39 235-279 196-234 (590)
64 3pki_A NAD-dependent deacetyla 33.9 23 0.00078 33.7 2.9 41 167-210 202-242 (355)
65 1ytl_A Acetyl-COA decarboxylas 32.4 16 0.00056 30.9 1.5 42 166-210 103-144 (174)
66 2x7j_A 2-succinyl-5-enolpyruvy 28.9 62 0.0021 32.8 5.5 40 235-279 234-273 (604)
67 3sho_A Transcriptional regulat 27.5 1.9E+02 0.0066 23.6 7.6 98 92-209 25-122 (187)
68 2wvg_A PDC, pyruvate decarboxy 26.4 67 0.0023 32.2 5.1 40 234-277 199-238 (568)
69 3fxa_A SIS domain protein; str 26.1 2.8E+02 0.0096 22.9 9.0 98 92-209 30-127 (201)
70 2i2w_A Phosphoheptose isomeras 26.0 2.9E+02 0.01 23.2 10.3 38 169-209 129-166 (212)
71 2vbi_A Pyruvate decarboxylase; 25.8 73 0.0025 31.9 5.3 40 234-277 199-238 (566)
72 1q1a_A HST2 protein; ternary c 25.2 53 0.0018 30.1 3.8 40 168-211 208-247 (289)
73 1q1a_A HST2 protein; ternary c 24.7 88 0.003 28.5 5.2 36 2-41 210-245 (289)
74 3efb_A Probable SOR-operon reg 23.5 1E+02 0.0036 27.5 5.4 96 85-182 61-167 (266)
75 1q14_A HST2 protein; histone d 23.5 1.1E+02 0.0037 29.1 5.6 59 2-64 218-283 (361)
76 2vk8_A Pyruvate decarboxylase 22.8 57 0.0019 32.7 3.8 41 235-279 202-242 (563)
77 2q28_A Oxalyl-COA decarboxylas 22.3 53 0.0018 32.9 3.5 41 235-279 202-242 (564)
78 3glr_A NAD-dependent deacetyla 21.9 46 0.0016 30.6 2.6 36 2-41 196-231 (285)
79 1m3s_A Hypothetical protein YC 21.9 3.2E+02 0.011 22.1 10.7 92 92-209 23-114 (186)
80 2c31_A Oxalyl-COA decarboxylas 21.8 56 0.0019 32.8 3.5 41 235-279 204-244 (568)
81 1jeo_A MJ1247, hypothetical pr 21.4 3.2E+02 0.011 22.0 10.7 92 92-209 26-117 (180)
82 2yva_A DNAA initiator-associat 21.2 3.4E+02 0.012 22.2 9.9 38 169-209 107-144 (196)
83 3glr_A NAD-dependent deacetyla 20.8 28 0.00096 32.0 0.9 42 166-211 192-233 (285)
84 1q6z_A BFD, BFDC, benzoylforma 20.8 73 0.0025 31.6 4.1 40 236-279 192-231 (528)
85 1q14_A HST2 protein; histone d 20.3 61 0.0021 30.8 3.2 41 168-212 216-256 (361)
No 1
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=100.00 E-value=3.4e-35 Score=313.08 Aligned_cols=295 Identities=16% Similarity=0.207 Sum_probs=238.7
Q ss_pred chHHhhhh----hcCCCEEEeC--CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccH-HHHHHHHHHHHH-Hh
Q psy14128 67 HPFSKKLS----AAKKPLIVVG--ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLAD-AEAMVALKDLLN-KL 136 (393)
Q Consensus 67 ~~~~~~l~----r~~~PlI~~g--~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t-~E~~~~~~k~~~-~l 136 (393)
.++..+.+ |+++||+|.| ++|++++|++|++.++++|.+. +||+++++++.|+..+ +|+.|+++||++ .+
T Consensus 49 ~~~~~~p~~~~~Rl~~Pl~R~~~~g~~~~isWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~ 128 (715)
T 2iv2_X 49 WDFINDTQILTPRLKTPMIRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVI 128 (715)
T ss_dssp TGGGGCCCSSSCBCCSCEECCSTTSCCEECCHHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTT
T ss_pred HHHhcCccccchhccCCeEecCCCCCEEEeeHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCcCcHHHHHHHHHHHHhc
Confidence 45667777 9999999998 9999999999999999999754 5899999999998888 999999999999 79
Q ss_pred CCCCccccCCCCccchhhhhhhcc---cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCc
Q psy14128 137 GSEDLYTEYAFPLEGAGTDLRANY---LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDL 213 (393)
Q Consensus 137 Gt~nid~~~~~~~~~~~~~~~~~~---~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~ 213 (393)
|++|+++....|..+...++...+ ..+.++.|+++||+||+||+|+.+++|++..+++++. ++|+|||+|||+.+.
T Consensus 129 Gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~-~~G~klividPr~t~ 207 (715)
T 2iv2_X 129 GTNNVDCCARVXHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVANHVINAK-RNGAKIIVCDPRKIE 207 (715)
T ss_dssp CCCCEECSSCCSCCSSSCSHHHHHSCCSCSSCGGGGGGCSEEEEESCCHHHHCHHHHHHHHHHH-HTTCEEEEECSSCCH
T ss_pred CCCcCCCCCccchhHHHHHHHhhcCCCCCCCCHhHHhcCCEEEEEcCChHHhCHHHHHHHHHHH-HCCCeEEEEcCCCCc
Confidence 999999877778765443433322 3456789999999999999999999999999999996 589999999998776
Q ss_pred ccc--ccc----cCCCHHHHHHHHc---------------------------------------c-----HHHHHHHHHh
Q psy14128 214 RYD--YEH----LGESADLIKQLAS---------------------------------------G-----SHAFSKKLAA 243 (393)
Q Consensus 214 ~~~--~~~----lg~~~~~l~~l~~---------------------------------------g-----~~~~a~~l~~ 243 (393)
+.. ..| +|+|.+++.+|+. | ++++|+.|++
T Consensus 208 ta~~Ad~~l~irPGtD~aL~~al~~~ii~~~l~D~~fl~~~t~gf~~l~~~v~~~tpe~~a~itGv~~~~I~~lA~~~a~ 287 (715)
T 2iv2_X 208 TARIADMHIALKNGSNIALLNAMGHVIIEENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQ 287 (715)
T ss_dssp HHHTCSEEECCCTTCHHHHHHHHHHHHHHTTCSCHHHHHHHEECHHHHHHHHHTCCSGGGHHHHCCCHHHHHHHHHHHHH
T ss_pred hhHhhCEEeccCCCcHHHHHHHHHHHHHHCCCcCHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 633 333 4677665544321 1 5778999999
Q ss_pred CCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCC-------ccccccccccC---------------------
Q psy14128 244 AKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGE-------SADLIKQLASG--------------------- 295 (393)
Q Consensus 244 a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~-------~~n~~G~~~~g--------------------- 295 (393)
+++++|++|+++.++.++.....++.+|+..+| +++..+. .+|++|+..+|
T Consensus 288 a~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G-~ig~~Ggg~~~~~~~~n~~G~~~~g~~~~~~~~~~~~~~~~~~~~~ 366 (715)
T 2iv2_X 288 AKSAAILWGMGVTQFYQGVETVRSLTSLAMLTG-NLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKF 366 (715)
T ss_dssp SSSEEEEEETTGGGSSSHHHHHHHHHHHHHHTT-CSSSTTCSEEEECSBTTHHHHHHTTCBTTEEGGGEETTCHHHHHHH
T ss_pred CCCeEEEEcccccccccHHHHHHHHHHHHHHhC-CCCCCCCccCCCccccccccccccCcCcCCCCccccCCCHHHHHHH
Confidence 999999999999999999999999999999998 5555443 45666653332
Q ss_pred -------------CCcHHHHh----hcccCcEEEEcCCCC-CCCChhhHH------------------------------
Q psy14128 296 -------------SHAFSKKL----AAAKKPLIVVGADML-SRSDGAAVL------------------------------ 327 (393)
Q Consensus 296 -------------g~~~~~~~----~~~~~al~v~g~np~-~~p~~~~v~------------------------------ 327 (393)
|.++.+++ ++.+|++|++|.||+ ++||...++
T Consensus 367 ~~~~~~~~~p~~~g~~~~~~~~~i~~g~ik~l~~~g~Np~~~~p~~~~~~~al~~~d~~V~~d~~~teTa~~ADvvLP~~ 446 (715)
T 2iv2_X 367 AKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPST 446 (715)
T ss_dssp HHHTTCSCCCCSCCCCGGGHHHHHHTTSCCEEEEESCCHHHHSSSHHHHHHHHHHSSEEEEEESBCCHHHHTCSEEEEBC
T ss_pred HHHhCCCcCCCCCCCCHHHHHHHHHcCCceEEEEeCCChhhcCcCHHHHHHHHhCCCeEEEEecccCcchhcCcEEccCC
Confidence 23344444 457899999999998 999987655
Q ss_pred -------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccccCCCC
Q psy14128 328 -------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGY 367 (393)
Q Consensus 328 -------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~~d~g~ 367 (393)
+++|..+++++|+|++|+||+| |..+|+++|. ++.|
T Consensus 447 ~~~E~~g~~~~~~~~~~~~~~~v~P~ge~r~d~~I---l~~La~~lg~-~~~~ 495 (715)
T 2iv2_X 447 SWGEHEGVFTAADRGFQRFFKAVEPKWDLKTDWQI---ISEIATRMGY-PMHY 495 (715)
T ss_dssp CBTTBCEEEECTTSEEEEECCCSCCSSSCBCHHHH---HHHHHHHTTC-CCCC
T ss_pred ccccCCCcEeCCCceEEEEecccCCCcccCCHHHH---HHHHHHHhCC-cCCc
Confidence 7999999999999999999999 5777777774 3444
No 2
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=100.00 E-value=4.1e-35 Score=315.10 Aligned_cols=292 Identities=13% Similarity=0.049 Sum_probs=236.0
Q ss_pred chHHhhhhhcCCCEEEe-------CCceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHHHH-h
Q psy14128 67 HPFSKKLSAAKKPLIVV-------GADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLLNK-L 136 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~-------g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~~~-l 136 (393)
.++..+.+|+++||+|. +++|++++|++||+.+|++|.+. +||+++|+++.|++.++|+.|+++||++. +
T Consensus 61 ~~~~~~p~Rl~~Pl~R~~~G~~~~~g~~~~isWdeAl~~ia~~l~~i~~~~G~~si~~~~sg~~~~e~~~~~~kl~~~~~ 140 (802)
T 3ml1_A 61 SKIMYGQDRLTRPLMRMKNGKYDKNGDFAPVTWDQAFDEMERQFKRVLKEKGPTAVGMFGSGQWTVWEGYAAAKLYKAGF 140 (802)
T ss_dssp GGTTCBTTCCCSCEEEEETTEECTTSEEEECCHHHHHHHHHHHHHHHHHHTCGGGEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HhhhcCcchhcCCeEeccCCCCCcCCCeEEeCHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCchHHHHHHHHHHHhhc
Confidence 45677889999999997 58899999999999999999754 58999999999999999999999999997 9
Q ss_pred CCCCccccCCCCccchhhhhhhccc---CCCCccCccccCEEEEecCCcCccccHHHHHHHHhhh-cCCceEEEEcCCCC
Q psy14128 137 GSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYL-TNELDVAYIGPKVD 212 (393)
Q Consensus 137 Gt~nid~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~-~~gakiivi~p~~~ 212 (393)
||+|+|++.++|+.+...++...++ .+.++.|+++||+||+||+|+.++||+++.|++++.+ ++|+|||||||+.+
T Consensus 141 gt~n~d~~~~~c~~~~~~~~~~~~G~~~~~~~~~d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t 220 (802)
T 3ml1_A 141 RSNNIDPNARHCMASAAAGFMRTFGMDEPMGCYDDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTH 220 (802)
T ss_dssp CCCCEEEGGGGTTHHHHHHHHHHHSSCSCSSCGGGGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBC
T ss_pred CCccccCCcccchhhHHHhhHhhcCCCCCCCCHHHHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 9999999888887654444443332 3456899999999999999999999999999987753 47999999999877
Q ss_pred cccc--ccc----cCCCHHHHHHHH------------------c----------------------------------c-
Q psy14128 213 LRYD--YEH----LGESADLIKQLA------------------S----------------------------------G- 233 (393)
Q Consensus 213 ~~~~--~~~----lg~~~~~l~~l~------------------~----------------------------------g- 233 (393)
.+.. ..| +|+|.+++..|+ . |
T Consensus 221 ~ta~~AD~~l~irPGtD~aL~~~m~~~ii~e~l~D~~Fv~~~t~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~gf 300 (802)
T 3ml1_A 221 RCFDLADIGIIFKPQTDLAMLNYIANYIIRNNKVNKDFVNKHTVFKEGVTDIGYGLRPDHPLQKAAKNASDPGAAKVITF 300 (802)
T ss_dssp GGGGTCSEEEECCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHEEEEEECCCCCCSCCTTSHHHHHCSSTTSTTCEEEECH
T ss_pred chhHHhccEeccCCCHHHHHHHHHHHHHHHCCCcCHHHHHHhhcccccccccccccccccccccccccccccccccCCcH
Confidence 7743 333 477766544331 1 3
Q ss_pred -------------------------HHHHHHHHHhC-CCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCc--
Q psy14128 234 -------------------------SHAFSKKLAAA-KKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGES-- 285 (393)
Q Consensus 234 -------------------------~~~~a~~l~~a-~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~-- 285 (393)
++++|+.|+++ ++++++||+|+.||.+|.....++.+|+.+|| +++.++.+
T Consensus 301 e~l~~~v~~~tpe~~a~itGv~~~~I~~lA~~~a~~~~~~~~~~~~G~~q~~~G~~~~~ai~~L~~ltG-nig~pGgg~~ 379 (802)
T 3ml1_A 301 DEFAKFVSKYDADYVSKLSAVPKAKLDQLAELYADPNIKVMSLWTMGFNQHTRGTWANNMVYNLHLLTG-KIATPGNSPF 379 (802)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCHHHHHHHHHHHHCTTSCEEEEESHHHHSSTTHHHHHHHHHHHHHHHT-CCSBTTBEEE
T ss_pred HHHHHHHhhCCHHHHHHHHCcCHHHHHHHHHHHHhcCCCEEEEecccccccchHHHHHHHHHHHHHHhC-CCCCCCCCcC
Confidence 57789999986 45778899999999999999999999999999 78877765
Q ss_pred -----cccccc-cccC------------------------------------CCcHHHHh----hcccCcEEEEcCCCC-
Q psy14128 286 -----ADLIKQ-LASG------------------------------------SHAFSKKL----AAAKKPLIVVGADML- 318 (393)
Q Consensus 286 -----~n~~G~-~~~g------------------------------------g~~~~~~~----~~~~~al~v~g~np~- 318 (393)
+|.+|. ..+| |.+..+++ ++.+|++|++|.||+
T Consensus 380 ~~~g~~n~~G~~~~~g~~~~~lp~~~~~~~~~~~~~~~~~w~~p~~~~~~~~g~~~~~~~~~~~~g~ik~l~i~g~Np~~ 459 (802)
T 3ml1_A 380 SLTGQPSACGTAREVGTFSHRLPADMVVTNPKHREEAERIWKLPPGTIPDKPGYDAVLQNRMLKDGKLNAYWVQVNNNMQ 459 (802)
T ss_dssp ECCCSTTTTTTHHHHTCSTTBCSTTCBTTCHHHHHHHHHHTTCCTTCSCSSCCCCHHHHHHHHHHTSCCEEEEESCCHHH
T ss_pred CCCCCCcccccccccccCcccCCCCccCCCHHHHHHHHHHhCCCccccCCCCCCCHHHHHHHhhcCCcEEEEEeCCCHHh
Confidence 355552 2111 33444544 357999999999998
Q ss_pred CCCChhh-HH--------------------------------------------HHhhhhhhccCCCCCCCcchHHHHHH
Q psy14128 319 SRSDGAA-VL--------------------------------------------ALVQQLAAKVTCESDVPCDWKVLNIL 353 (393)
Q Consensus 319 ~~p~~~~-v~--------------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l 353 (393)
++||.+. ++ +++|..+++++|||++|+||+| +
T Consensus 460 s~p~~~~~~~~al~~~~~f~Vv~D~~~teTa~~ADivLPaa~~~Ek~g~~~n~~r~v~~~~~~v~P~gear~D~~I---~ 536 (802)
T 3ml1_A 460 AAANLMEEGLPGYRNPANFIVVSDAYPTVTALAADLVLPSAMWVEKEGAYGNAERRTQFWHQLVDAPGEARSDLWQ---L 536 (802)
T ss_dssp HSSCTTTTHHHHHHCTTCEEEEEESSCCHHHHTCSEEEEEECGGGSCEEEECTTSEEEEECCCSCCSTTCEEHHHH---H
T ss_pred cCCCccHHHHHHHhcCCCeEEEEeeccCchHhhCcEEECCCCccccCceeecccceEEEeccCcCCCcCCCCHHHH---H
Confidence 8999877 44 7899999999999999999999 6
Q ss_pred HHHHHhccc
Q psy14128 354 QKAASQVAA 362 (393)
Q Consensus 354 ~~~a~~~g~ 362 (393)
.++|++||.
T Consensus 537 ~~La~rlG~ 545 (802)
T 3ml1_A 537 VEFAKRFKV 545 (802)
T ss_dssp HHHHTTCBH
T ss_pred HHHHHHhCC
Confidence 778888874
No 3
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=100.00 E-value=3e-34 Score=307.66 Aligned_cols=284 Identities=17% Similarity=0.158 Sum_probs=229.0
Q ss_pred chHHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCC
Q psy14128 67 HPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYA 146 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~ 146 (393)
+++.++ +|+++||+|.|++|.+++|++|+..++++|.+.. +++++++.|++.++|+.|+++||++.||++|+|++.+
T Consensus 298 ~~~~~~-dRL~~Pl~R~~G~~~~iSWdeAl~~ia~~L~~i~--~~~i~~~~s~~~t~E~~~~~~kl~~~lGt~n~d~~~~ 374 (783)
T 3i9v_3 298 HEWADQ-NRLKTPLVRKEGRLVEATWEEAFLALKEGLKEAR--GEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQGR 374 (783)
T ss_dssp TTTTTT-SCCCSCEEESSSSEEECCHHHHHHHHHHHHHTCC--TTSEEEEECTTCCTTHHHHHHHHHHHTTCSCEEETTC
T ss_pred hhhhhh-ccccCceEccCCceeEeCHHHHHHHHHHHHHhhc--cCCEEEEECCCCCHHHHHHHHHHHHHhCCCcccCCch
Confidence 567778 9999999999999999999999999999997653 2789999999999999999999999999999998765
Q ss_pred CCccchhhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhh------------------------cCCc
Q psy14128 147 FPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYL------------------------TNEL 202 (393)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~------------------------~~ga 202 (393)
.|... . ...+.++.|+++||+||+|| |+.+++|+++.|+|++.+ ++|+
T Consensus 375 ~~~~~------~-~~~~~~~~di~~ad~Il~~G-Np~~~~P~~~~rlr~a~~~~~~~~~~~~g~~~~~~~v~~~~~~~g~ 446 (783)
T 3i9v_3 375 TAAPA------S-LFPPASLEDLLQADFALVLG-DPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTD 446 (783)
T ss_dssp CSSCG------G-GSCBCCHHHHHHCSCEEEES-CHHHHSTHHHHHHHHHHTTCCCCCCBTTBSCSSCTTCCTTCCCCTT
T ss_pred hhhhh------c-cCCCCCHHHHhhCCEEEEeC-ChhHhCcHHHHHHHHHHHhcccchhhcccccchhhhhhhhhhcCCC
Confidence 55321 1 23467899999999999999 999999999999998853 5789
Q ss_pred eEEEEcCCCCcccc--c----cccCCCHHHHHHHHcc------HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHH
Q psy14128 203 DVAYIGPKVDLRYD--Y----EHLGESADLIKQLASG------SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQ 270 (393)
Q Consensus 203 kiivi~p~~~~~~~--~----~~lg~~~~~l~~l~~g------~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~ 270 (393)
||++|||+.+.+.. . +.+|++.+++.+++.. ++++|+.|+++++++|++|+++.++.++.... ..
T Consensus 447 klividPr~t~ta~~Ad~~l~i~PGtD~all~al~~~li~~e~i~~~A~~la~a~~~~I~~G~g~~~~~~~~~~~---~~ 523 (783)
T 3i9v_3 447 KMALFAPYRAPLMKWAAIHEVHRPGEEREILLALLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTVAAERA---RL 523 (783)
T ss_dssp SEEEEESSCCGGGTTCSEEEECCSSCHHHHHHHHHTSSCCCHHHHHHHHHHHHCSSCEEEECSHHHHCHHHHHHH---HH
T ss_pred EEEEEeCCcchhhHhhcceEecCCCcHHHHHHHHHHhccCHHHHHHHHHHHHhCCCcEEEECchhhhcHHHHHHH---HH
Confidence 99999997766633 2 3458888888887653 57899999999999999999999987765322 22
Q ss_pred HHHHhCCCcccCCCccccccccccCCCc--HHHHhh-cccCcEEEEcCCCC-C------------CCC-----hhhHH--
Q psy14128 271 LAAKVTCESDHLGESADLIKQLASGSHA--FSKKLA-AAKKPLIVVGADML-S------------RSD-----GAAVL-- 327 (393)
Q Consensus 271 l~~~tg~~~~~~~~~~n~~G~~~~gg~~--~~~~~~-~~~~al~v~g~np~-~------------~p~-----~~~v~-- 327 (393)
|+..+|+++.++.+++|++|+..+|... ..++++ ..+|++|++|.||. + +.+ .++|+
T Consensus 524 l~g~~G~g~~~l~~~~N~~Ga~~~G~~p~~~g~~~~~~gikal~v~g~np~~~L~~~~fvVv~d~~~t~ta~~~ADvvLP 603 (783)
T 3i9v_3 524 LAERKGAKVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHLHPLAERYAHVVLP 603 (783)
T ss_dssp HHHHTTCCEEECCSSTTHHHHHHHTCSCCSSCCCTTSCCCSEEEESSCCCHHHHTTCSEEEECCSSCCTTTTTTCSEECC
T ss_pred HhcccCCCeeeccCcchhhhhhhcCCCCCchhhhhhcCCCeEEEEeCCCHHHHHhhCCEEEEEeCcCCchhhhCCcEEec
Confidence 7788899999999999999998776211 012332 23999999999996 1 111 11222
Q ss_pred ---------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccccCCCCC
Q psy14128 328 ---------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYK 368 (393)
Q Consensus 328 ---------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~~d~g~~ 368 (393)
+|+|.++++++|||++|+||+| |..+|+++| ++..|.
T Consensus 604 ~a~~~E~~gt~~n~eg~~~~~~~~v~p~ge~r~d~~i---l~~La~~lG-~~~~~~ 655 (783)
T 3i9v_3 604 APTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQV---LALLAEALG-VRPPFR 655 (783)
T ss_dssp CCCGGGCCEEEECTTSBEEEECCCCBCCCSCCCHHHH---HHHHHHTTS-SCCSCC
T ss_pred CCcccccCCeEEccCCcEEEeccccCCCCCCccHHHH---HHHHHHHhC-CCCCCC
Confidence 8999999999999999999999 677888888 455554
No 4
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=100.00 E-value=4.2e-33 Score=297.43 Aligned_cols=292 Identities=12% Similarity=0.103 Sum_probs=233.6
Q ss_pred chHHhhhhhcCCCEEEe--CCceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHHHH-hCCCCc
Q psy14128 67 HPFSKKLSAAKKPLIVV--GADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLLNK-LGSEDL 141 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~--g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~~~-lGt~ni 141 (393)
.++..+.+|+++||+|. +++|++++|++|++.++++|.+. +||+++++++.|++.++|+.|+++||++. +|++|+
T Consensus 54 ~~~~~~p~Rl~~Pl~R~~~~g~~~~isWdeAl~~ia~~l~~~~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~~gs~n~ 133 (723)
T 2nap_A 54 IPVLNSKERVTQPLVRRHKGGKLEPVSWDEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFKGGFGTNNV 133 (723)
T ss_dssp HHHHTCSCSCCSCEECSSTTSCCEECCHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTSCHHHHHHHHHHHHHTSCCCCE
T ss_pred HHhhcCchhhccCEeccCCCCCEEEecHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcccchhhHHHHHHHHHhcCCCce
Confidence 45777889999999994 57899999999999999999754 58999999999999999999999999998 999999
Q ss_pred cccCCCCccchhhhhhhccc---CCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcC-CceEEEEcCCCCcccc-
Q psy14128 142 YTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTN-ELDVAYIGPKVDLRYD- 216 (393)
Q Consensus 142 d~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~-gakiivi~p~~~~~~~- 216 (393)
++....|......++...++ .+.++.|+++||+||+||+|+.+++|.+..+++++.+++ |+|||+|||+.+.+..
T Consensus 134 ~~~~~~c~~~~~~~~~~~~G~~~~~~~~~d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~ 213 (723)
T 2nap_A 134 DGNPRLCMASAVGGYVTSFGKDEPMGTYADIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRI 213 (723)
T ss_dssp EEGGGGTTHHHHHHHHHHHSSCSCSSCGGGGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGG
T ss_pred eCCCccccchHhHHHHhccCCCCCCCChhhHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhh
Confidence 98877787543444433332 356789999999999999999999999999999987533 9999999998776633
Q ss_pred -ccc----cCCCHHHHHHHHc------------------------------------------------c-----HHHHH
Q psy14128 217 -YEH----LGESADLIKQLAS------------------------------------------------G-----SHAFS 238 (393)
Q Consensus 217 -~~~----lg~~~~~l~~l~~------------------------------------------------g-----~~~~a 238 (393)
..| +|+|.+++.+|+. | ++++|
T Consensus 214 Ad~~l~irPGtD~al~~al~~~ii~~~l~D~~fl~~~tn~~~g~~~~~gf~~l~~~~~~~tpe~~a~itGv~~~~i~~~A 293 (723)
T 2nap_A 214 ADMHVAFRPGTDLAFMHSMAWVIINEELDNPRFWQRYVNFMDAEGKPSDFEGYKAFLENYRPEKVAEICRVPVEQIYGAA 293 (723)
T ss_dssp CSEEECCCTTTHHHHHHHHHHHHHHTTCSCHHHHHHHEEEECTTSCEECHHHHHHHHGGGCHHHHHHHHTSCHHHHHHHH
T ss_pred hCeeeecCCCcHHHHHHHHHHHHHHcCCccHHHHHHhhccccccccCcHHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHH
Confidence 334 4666554433310 1 56789
Q ss_pred HHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCC-------Cccccccc-cccC---------------
Q psy14128 239 KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLG-------ESADLIKQ-LASG--------------- 295 (393)
Q Consensus 239 ~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~-------~~~n~~G~-~~~g--------------- 295 (393)
+.|+++++++|++|+++.++.++.....++.+|+.++| +++..+ ..+|++|. ..++
T Consensus 294 ~~~a~a~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G-~ig~~G~g~~~~~~~~n~~g~~~~~g~~~~~~p~~~~~~~~ 372 (723)
T 2nap_A 294 RAFAESAATMSLWCMGINQRVQGVFANNLIHNLHLITG-QICRPGATSFSLTGQPNACGGVRDGGALSHLLPAGRAIPNA 372 (723)
T ss_dssp HHHHHSSSEEEEECTTTSSSTTHHHHHHHHHHHHHHHT-CCSBTTBEEEECCCSTTHHHHTTTTTCSTTEETTTEETTCH
T ss_pred HHHHhCCCeEEEeccccccchhHHHHHHHHHHHHHHhC-CCCCCCCccCCCcccccccCcccccccCCCCCCccccCCCH
Confidence 99999999999999999999999999999999999998 555544 34566665 2211
Q ss_pred ---------------------CCcHHHHh----hcccCcEEEEcCCCC-CCCChhhHH----------------------
Q psy14128 296 ---------------------SHAFSKKL----AAAKKPLIVVGADML-SRSDGAAVL---------------------- 327 (393)
Q Consensus 296 ---------------------g~~~~~~~----~~~~~al~v~g~np~-~~p~~~~v~---------------------- 327 (393)
|.+..+++ .+.+|++|++|.||+ ++||...++
T Consensus 373 ~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~g~ik~l~~~g~Np~~~~p~~~~~~~al~~~~d~~V~~d~~~~teTa 452 (723)
T 2nap_A 373 KHRAEMEKLWGLPEGRIAPEPGYHTVALFEALGRGDVKCMIICETNPAHTLPNLNKVHKAMSHPESFIVCIEAFPDAVTL 452 (723)
T ss_dssp HHHHHHHHHHTCCTTCSCSSCCCCHHHHHHHHHHTSSCEEEEESCCHHHHSSSHHHHHHHHTCTTCEEEEECSCTTCGGG
T ss_pred HHHHHHHHHhCCCcccCCCCCCCCHHHHHHHHhcCCceEEEEeCcCccccCCCHHHHHHHHhcCCCEEEEEecCCCCchH
Confidence 34455555 357899999999997 777754332
Q ss_pred -----------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccc
Q psy14128 328 -----------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAA 362 (393)
Q Consensus 328 -----------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~ 362 (393)
+++|..+++++|+|++|+||+| |.++|+++|.
T Consensus 453 ~~ADvvLP~~~~~E~~g~~~~~~~~~~~~~~~v~P~ge~r~d~~I---l~~La~~lg~ 507 (723)
T 2nap_A 453 EYADLVLPPAFWCERDGVYGCGERRYSLTEKAVDPPGQCRPTVNT---LVEFARRAGV 507 (723)
T ss_dssp GTCSEEECBCCGGGSCEEEECTTSEEEEECCCSCCCTTCBCHHHH---HHHHHHHHTC
T ss_pred hhCcEEecCCcccccCcceecCCceEEEEecccCCCcCCCcHHHH---HHHHHHHhCC
Confidence 8999999999999999999999 5666677764
No 5
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=100.00 E-value=3.2e-33 Score=298.47 Aligned_cols=289 Identities=12% Similarity=0.078 Sum_probs=227.4
Q ss_pred chHHhhhhhcCCCEEEeC-----CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHHHHhCCC
Q psy14128 67 HPFSKKLSAAKKPLIVVG-----ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLLNKLGSE 139 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g-----~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~ 139 (393)
.++..+.+|+++||+|.| ++|++++|++|++.++++|.+. +||+++++++.|+..++|+.|+.+||++.+|++
T Consensus 50 ~~~~~~p~Rl~~Pl~R~g~~rG~g~~~~isWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~ 129 (727)
T 2e7z_A 50 DTIRTHKDRVLYPLKNVGSKRGEQRWERISWDQALDEIAEKLKKIIAKYGPESLGVSQTEINQQSEYGTLRRFMNLLGSP 129 (727)
T ss_dssp HHHHTCTTCCCSCEEECSSSTTCCCEEECCHHHHHHHHHHHHHHHHHHHCGGGEEEEECGGGTCCCTTHHHHHHHHHTCC
T ss_pred HHHhhCcccccCchhhcCCCCCCCCeEEecHHHHHHHHHHHHHHHHHhhCCcEEEEEeCCCCCccchHHHHHHHHHcCCC
Confidence 456778899999999988 8999999999999999999754 589999999988877778778889999999999
Q ss_pred CccccCCCCccchhhhhhhcccCCCCccCccccCEEEEecCCcCcccc-HHHHHHHHhhhcCCceEEEEcCCCCcccc--
Q psy14128 140 DLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAP-LFNARIRKGYLTNELDVAYIGPKVDLRYD-- 216 (393)
Q Consensus 140 nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p-~l~~rlr~a~~~~gakiivi~p~~~~~~~-- 216 (393)
|++++...|+.+...++...++. ....|+++||+||+||+|+.+++| .+..+++++. ++|+|||+|||+.+.+..
T Consensus 130 n~~~~~~~c~~~~~~~~~~~~G~-~~~~d~~~ad~il~~G~n~~~~~p~~~~~~l~~a~-~~G~klividPr~t~ta~~A 207 (727)
T 2e7z_A 130 NWTSAMYMCIGNTAGVHRVTHGS-YSFASFADSNCLLFIGKNLSNHNWVSQFNDLKAAL-KRGCKLIVLDPRRTKVAEMA 207 (727)
T ss_dssp CEECGGGGTTHHHHHHHHHHHSS-CEEECTTTCSEEEEESCCCBTTBSHHHHHHHHHHH-HHTCEEEEECSSCCHHHHHC
T ss_pred CccCCcccchhHHHHHHHHhcCC-CCCCCcccCCEEEEECCChhhcCCHHHHHHHHHHH-HCCCeEEEECCCCCcchhhc
Confidence 99987677765433344333432 245699999999999999999999 9999999997 579999999998777643
Q ss_pred ccc----cCCCHHHHHHHHc--------------------------------------------cHHHHHHHHHhCCCCE
Q psy14128 217 YEH----LGESADLIKQLAS--------------------------------------------GSHAFSKKLAAAKKPL 248 (393)
Q Consensus 217 ~~~----lg~~~~~l~~l~~--------------------------------------------g~~~~a~~l~~a~~~~ 248 (393)
..| +|+|.+++.+|+. .++++|+.|+++++++
T Consensus 208 d~~l~irPGtD~al~~a~~~~ii~~~l~d~~fv~~~t~gf~~l~~~v~~~tpe~~a~itGv~~~~I~~~A~~~a~a~~~~ 287 (727)
T 2e7z_A 208 DIWLPLRYGTDAALFLGMINVIINEQLYDKEFVENWCVGFEELKERVQEYPLDKVAEITGCDAGEIRKAAVMFATESPAS 287 (727)
T ss_dssp SEEECCCTTCHHHHHHHHHHHHHHTTCSCHHHHHHHEECHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHHSSSEE
T ss_pred ceeecCCCCcHHHHHHHHHHHHHHCCcccHHHHHHHhHHHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhCCCeE
Confidence 344 4777765544321 1577999999999999
Q ss_pred EEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccc------------------c---ccccC------------
Q psy14128 249 IVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLI------------------K---QLASG------------ 295 (393)
Q Consensus 249 ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~------------------G---~~~~g------------ 295 (393)
|++|+++.++.++.....++.+|+.++| ++ ..+.+.+.. | ...+|
T Consensus 288 i~~g~g~~~~~~g~~~~~a~~~L~~l~G-~i-~~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 365 (727)
T 2e7z_A 288 IPWAVSTDMQKNSCSAIRAQCILRAIVG-SF-VNGAEILGAPHSDLVPISKIQMHEALPEEKKKLQLGTETYPFLTYTGM 365 (727)
T ss_dssp CCCCSGGGSSTTHHHHHHHHHHHHHHHT-TT-TSSSEEECBSCTTSCCHHHHTTGGGSCHHHHHHCTTTTTCGGGSHHHH
T ss_pred EEeCchhhhhccHHHHHHHHHHHHHHhC-Cc-ccCCccccCCCccccccccccchhhcCccccccccCccccCccccccc
Confidence 9999999999999999999999999999 55 444322211 0 00000
Q ss_pred --C--------------------CcHHHHh----hcc---cCcEEEEcCCCC-CCCChhhHH------------------
Q psy14128 296 --S--------------------HAFSKKL----AAA---KKPLIVVGADML-SRSDGAAVL------------------ 327 (393)
Q Consensus 296 --g--------------------~~~~~~~----~~~---~~al~v~g~np~-~~p~~~~v~------------------ 327 (393)
. ....+++ ++. +|++|++|.||+ +.||...++
T Consensus 366 ~~~~~~~~~~wg~~~~~~~~~~~~~~~~l~~~~~~g~py~ik~l~~~g~Np~~~~p~~~~~~~aL~~l~~~V~~d~~~te 445 (727)
T 2e7z_A 366 SALEEPSERVYGVKYFHNMGAFMANPTALFTAMATEKPYPVKAFFALASNALMGYANQQNALKGLMNQDLVVCYDQFMTP 445 (727)
T ss_dssp GGGHHHHHHHHSCSSCCCSSCSCCCHHHHHHHHHHCCSSCCCEEEEESCCGGGSSSCHHHHHHHHHTCSEEEEEESSCCT
T ss_pred chhhhhhhhhcccccccccccccccHHHHHHHHHcCCCcceEEEEEeCCChhhcCCCHHHHHHHHhCCCCEEEeecccCc
Confidence 1 3333333 233 899999999998 999987765
Q ss_pred -------------------------HH--hhhhhhccCCCCCCCcchHHHHHHHHHHHhccc
Q psy14128 328 -------------------------AL--VQQLAAKVTCESDVPCDWKVLNILQKAASQVAA 362 (393)
Q Consensus 328 -------------------------~~--vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~ 362 (393)
++ +|..+++++|+|++|+||+| |.++|+++|.
T Consensus 446 Ta~~ADvvLP~~~~~E~~g~~~~~~~~~~v~~~~~~v~P~gear~d~~I---~~~La~~lg~ 504 (727)
T 2e7z_A 446 TAQLADYVLPGDHWLERPVVQPNWEGIPFGNTSQQVVEPAGEAKDEYYF---IRELAVRMGL 504 (727)
T ss_dssp TGGGCSEEEEBCCGGGCCBCSCSSTBCSEEECBCCCSCCSTTCBCHHHH---HHHHHHHTTC
T ss_pred cHhhCcEEeCCCCccccccccccCCCccceEEEccccCCCCCCcCHHHH---HHHHHHHhCC
Confidence 33 99999999999999999999 5777777774
No 6
>4aay_A AROA; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.97 E-value=7.5e-32 Score=290.50 Aligned_cols=285 Identities=14% Similarity=0.083 Sum_probs=219.5
Q ss_pred hhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHh--ccCCCceEEE----cCcccHHHHHHHHHHHHHH-hCCCCccccC
Q psy14128 73 LSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAK--VTCESDVAGV----VGSLADAEAMVALKDLLNK-LGSEDLYTEY 145 (393)
Q Consensus 73 l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l----~g~~~t~E~~~~~~k~~~~-lGt~nid~~~ 145 (393)
.+|+++||+|.|++|++++|++||+.+|++|.+. +||+++++++ +|+..++|+.|.++||++. +||+|+|++.
T Consensus 121 ~dRL~~Pl~R~~g~~~~iSWdeAld~iA~kl~~i~~~~Gp~sv~~~~~~~g~~~~~~e~~y~~~k~~~~~lGt~ni~~~~ 200 (845)
T 4aay_A 121 QQRLTDPLVWRYGQMQPTSWDDALDLVARVTAKIVKEKGEDALIVSAFDHGGAGGGYENTWGTGKLYFEAMKVKNIRIHN 200 (845)
T ss_dssp TTSCCSCEEEETTEEEECCHHHHHHHHHHHHHHHHHHHCGGGEEEEECCCCSTTCCHHHHHHHHHHHHTTCCCCSEEESS
T ss_pred cCcccCCeEecCCCEeEeCHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCCCCcchHHHHHHHHHHHHhcCCCeeeccC
Confidence 3999999999999999999999999999999764 5899999987 4567889999999999987 9999999877
Q ss_pred CCCccchhhhhhh--cccCCCCccCccccCEEEEecCCcCccccHHHH-----HHH-----Hhh------hcCCceEEEE
Q psy14128 146 AFPLEGAGTDLRA--NYLLNNKIAGAEEADLILLIGTNPRFEAPLFNA-----RIR-----KGY------LTNELDVAYI 207 (393)
Q Consensus 146 ~~~~~~~~~~~~~--~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~-----rlr-----~a~------~~~gakiivi 207 (393)
+.|+...-.+... ...++.+++|+++||+||+||+|+.+++|.+.. .++ ++. +++|+|||||
T Consensus 201 r~~~ss~c~~~~~~G~~~~~~~~~D~~~ad~il~~G~Np~~~~p~~~~~h~~~~~~~~~~~~~k~~~~~~~~~GaklIvI 280 (845)
T 4aay_A 201 RPAYNSEVHGTRDMGVGELNNCYEDAELADTIVAVGTNALETQTNYFLNHWIPNLRGESLGKKKELMPEEPHEAGRIIIV 280 (845)
T ss_dssp SSSSCCSCHHHHHTTCCSCCSCTHHHHHCSEEEEESCCHHHHSHHHHHHTHHHHHHTTTHHHHHHHSCSSCCCCCEEEEE
T ss_pred cCccchHHHHHHHHcCCCCCCChhHHhhCCEEEEEeCChhHhCcchHHHHHHHHHHHHHHHHHhhhccccccCCCEEEEE
Confidence 6555321111111 123456799999999999999999999987531 111 111 1369999999
Q ss_pred cCCCCcccc----------ccc----cCCCHHHHHHH------------------H------------------------
Q psy14128 208 GPKVDLRYD----------YEH----LGESADLIKQL------------------A------------------------ 231 (393)
Q Consensus 208 ~p~~~~~~~----------~~~----lg~~~~~l~~l------------------~------------------------ 231 (393)
||+.+.+.. ..| +|+|.+++..| +
T Consensus 281 DPr~t~ta~~Ad~~~~~~~~~~l~irPGTD~AL~~a~~~~ii~egl~D~~Fi~~~t~~~~~~~p~~~~~~~~~~~~~~~~ 360 (845)
T 4aay_A 281 DPRRTVTVNACEQTAGADNVLHLAINSGTDLALFNALFTYIADKGWVDRDFIDKSTLREGTARPPLYPARGVSEANPGHL 360 (845)
T ss_dssp CSSCCHHHHHHHHHHCGGGEEEECCCTTCHHHHHHHHHHHHHHHTCSCHHHHHHHBCCCCCCCCTTTTTSCSBTTBCSEE
T ss_pred eCCCCHHHHHHHhhcccccceEEeecCCcHHHHHHHHHHHHHHcCCccHHHHHHHhcccccccccccccccccccccccc
Confidence 998776632 134 46776655443 2
Q ss_pred cc-------------------------HHHHHHHHHhCC------CCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcc
Q psy14128 232 SG-------------------------SHAFSKKLAAAK------KPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280 (393)
Q Consensus 232 ~g-------------------------~~~~a~~l~~a~------~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~ 280 (393)
+| ++++|+.|++++ +++++||+|+.++.++.....++.+|+.+|| +++
T Consensus 361 ~gfe~~~~~~~~tpe~aa~itGv~~~~I~~~A~~~a~~~~~~~~~~~~~~~~~Gi~~~~~g~~~~~ai~~L~lltG-niG 439 (845)
T 4aay_A 361 SSFEDAVEGCRMSIEEAAEITGLDAAQIIKAAEWIGMPKEGGKRRRVMFGYEKGLIWGNDNYRTNGALVNLALATG-NIG 439 (845)
T ss_dssp ECHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCTTSCCCCEEEEECHHHHTSTTHHHHHHHHHHHHHHTT-CSS
T ss_pred cCHHHHHHhccCCHHHHHHHHCcCHHHHHHHHHHHhhccccccccceEEEecchhhcccChHHHHHHHHHHHHHhC-CCC
Confidence 32 577899999876 5799999999999999999999999999999 899
Q ss_pred cCCCccccccccccC---------CC---cHHHH-hhcccCcEEEEcCCCC-CCCChhh---------------------
Q psy14128 281 HLGESADLIKQLASG---------SH---AFSKK-LAAAKKPLIVVGADML-SRSDGAA--------------------- 325 (393)
Q Consensus 281 ~~~~~~n~~G~~~~g---------g~---~~~~~-~~~~~~al~v~g~np~-~~p~~~~--------------------- 325 (393)
.++.+.+++|....| |. .+.+. ..+.+|++|++|.||. +.||...
T Consensus 440 ~pGgg~~~~~g~~~g~~~p~~~~pg~~~~~~~~~~~~g~~k~~~v~g~Np~~s~p~~~~~~~al~~~~~~v~~~l~~~~~ 519 (845)
T 4aay_A 440 RPGGGVVRLGGHQEGYVRPSDAHVGRPAAYVDQLLIGGQGGVHHIWGCDHYKTTLNAHEFKRVYKKRTDMVKDAMSAAPY 519 (845)
T ss_dssp STTCCEEECCSBCBCCCCSCCGGGCSSCCCHHHHHHTTCCSEEEEESCCHHHHSTTHHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred CCCCcccCCCCCCCCCcCccccCCCcchhhhhhhhhcCcceEEEEeccCccccCcCHHHHHHHHhhcchhHHHHHhhccc
Confidence 999998887654332 21 23332 3457899999999998 7787532
Q ss_pred --------------------HH---------------------------------HHhhhhhhccCCCCCCCcchHHHHH
Q psy14128 326 --------------------VL---------------------------------ALVQQLAAKVTCESDVPCDWKVLNI 352 (393)
Q Consensus 326 --------------------v~---------------------------------~~vq~~~~av~~~g~~~~dw~i~~~ 352 (393)
++ +++|..+++++|||++|+||+|+
T Consensus 520 ~~~~~~~~~v~~aL~~~~dfvVv~D~f~TeTA~~ADvVLPaa~~~Ek~gt~~n~~r~v~~~~~~i~p~gear~d~~i~-- 597 (845)
T 4aay_A 520 GDREAMVNAIVDAINQGGLFAVNVDIIPTKIGEACHVILPAATSGEMNLTSMNGERRMRLTERYMDPPGQSMPDCLIA-- 597 (845)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEESSCCSGGGGCSEEEEEECBTTBCEEEECTTCEEEEECCCSCCSTTCEEHHHHH--
T ss_pred cchhhHHHHHHHHhccCCCeEEEEecccChhHhhccEEcccCcccccCceEecCCceEEEeecccCCCccCCcHHHHH--
Confidence 11 89999999999999999999995
Q ss_pred HHHHHHhcc
Q psy14128 353 LQKAASQVA 361 (393)
Q Consensus 353 l~~~a~~~g 361 (393)
.++|++||
T Consensus 598 -~~lA~rLg 605 (845)
T 4aay_A 598 -ARLANTME 605 (845)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHhc
Confidence 55666664
No 7
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=99.97 E-value=2.6e-31 Score=285.07 Aligned_cols=289 Identities=12% Similarity=0.088 Sum_probs=224.3
Q ss_pred chHHhhhhhcCCCEEEeC------CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHHHHHHHHHHH-HHhC
Q psy14128 67 HPFSKKLSAAKKPLIVVG------ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAEAMVALKDLL-NKLG 137 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g------~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~k~~-~~lG 137 (393)
.++..+.+|+++||+|.| ++|++++|++|++.++++|.+. +||+++++++.| .++| |+++||+ +.+|
T Consensus 86 ~~~~~~p~Rl~~Pl~R~g~~~rG~g~~~~isWdeAl~~ia~~l~~i~~~~G~~~i~~~~~--~~~e--~~~~~~~r~~~G 161 (765)
T 2vpz_A 86 PQTTYDPDRLKRPLIRVEGSQRGEGKYRVATWEEALDHIAKKMLEIREKYGPEAIAFFGH--GTGD--YWFVDFLPAAWG 161 (765)
T ss_dssp GGGGGCTTSCCSCEEECTTCCSSSCCEEECCHHHHHHHHHHHHHHHHHHTCGGGCEEEEC--STTH--HHHTTTHHHHHT
T ss_pred HHhhcCCCcccCCceeCCCCCCCCCceEEeeHHHHHHHHHHHHHHHHHhhCCcEEEEEcC--CCcH--HHHHHHHHHhcC
Confidence 567788899999999988 8999999999999999999754 589999998877 3555 7889999 7899
Q ss_pred CCCccccC-CCCccchhhhhhhcccC--C-CCccCccccCEEEEecCCcCcccc-HHHHHHHHhhhcCCceEEEEcCCCC
Q psy14128 138 SEDLYTEY-AFPLEGAGTDLRANYLL--N-NKIAGAEEADLILLIGTNPRFEAP-LFNARIRKGYLTNELDVAYIGPKVD 212 (393)
Q Consensus 138 t~nid~~~-~~~~~~~~~~~~~~~~~--~-~~~~~ie~AD~IL~iG~n~~~~~p-~l~~rlr~a~~~~gakiivi~p~~~ 212 (393)
++|+++.. ..|..+...++...++. . +++.|+++||+||+||+|+.+++| .+..+++++. ++|+|||+|||+.+
T Consensus 162 t~n~~~~~~~~c~~~~~~~~~~~~G~~~~~~~~~d~~~ad~il~~G~n~~~~~p~~~~~~~~~a~-~~G~klividPr~t 240 (765)
T 2vpz_A 162 SPNAAKPSVSLCTAPREVASQWVFGRPIGGHEPIDWENARYIVLIGHHIGEDTHNTQLQDFALAL-KNGAKVVVVDPRFS 240 (765)
T ss_dssp CCCEECHHHHTTTHHHHHHHHHHSSSCCCSSCCCCGGGCSEEEEESCCBTTBCCHHHHHHHHHHH-HTTCEEEEECSBCC
T ss_pred CCccCCCcccccccHHHHHHHhhcCCCCCCCCccccccCCEEEEEeCChhhcCChHHHHHHHHHH-HCCCEEEEECCCCC
Confidence 99999876 67775443444333332 2 457899999999999999999999 9999999987 58999999999777
Q ss_pred cccc--ccc----cCCCHHHHHHHHc--------------------------------------------cHHHHHHHHH
Q psy14128 213 LRYD--YEH----LGESADLIKQLAS--------------------------------------------GSHAFSKKLA 242 (393)
Q Consensus 213 ~~~~--~~~----lg~~~~~l~~l~~--------------------------------------------g~~~~a~~l~ 242 (393)
.+.. ..| +|+|.+++.+|+. .++++|+.|+
T Consensus 241 ~ta~~Ad~~l~irPGtD~al~~al~~~ii~~~l~D~~fi~~~t~gf~~l~~~v~~~tpe~~a~itGv~~~~I~~lA~~~a 320 (765)
T 2vpz_A 241 TAAAKAHRWLPIKPGTDTALLLAWIHVLIYEDLYDKEYVAKYTVGFEELKAHVKDFTPEWAEKHTEIPAQVIREVAREMA 320 (765)
T ss_dssp TTGGGCSEEECCCTTCHHHHHHHHHHHHHHTTCSCHHHHHHHEECCHHHHHHTSSCCHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cchhhCCeEeCCCCCcHHHHHHHHHHHHHHcCCcCHHHHHHHccHHHHHHHHhhcCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6633 344 4677665544321 1577899999
Q ss_pred -hCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCC----ccccccccc------------cC----------
Q psy14128 243 -AAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGE----SADLIKQLA------------SG---------- 295 (393)
Q Consensus 243 -~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~----~~n~~G~~~------------~g---------- 295 (393)
.+++++|++|+++.++.++.....++.+|+.++| +++..+. .+|++|... .+
T Consensus 321 ~~a~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G-~ig~~Gg~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~ 399 (765)
T 2vpz_A 321 AHKPRAVLPPTRHNVWYGDDTYRVMALLYVNVLLG-NYGRPGGFYIAQSPYLEKYPLPPLPLEPAAGGCSGPSGGDHEPE 399 (765)
T ss_dssp TTTTSEECCCCSCCCSSTTTHHHHHHHHHHHHHHT-CBTSTTTBCCCBCCCCCCCCCCCCSSCCCCCCSSSCSSTTTTTS
T ss_pred hhCCCEEEEcccccccccchHHHHHHHHHHHHHhC-CCCCCCCcccCCCCCcccCChhhcCCCCcccccccccccccccc
Confidence 8899999999999999999999999999999998 5554432 223333110 00
Q ss_pred --------------CCcHHH----Hhhc---ccCcEEEEcCCCC-CCCChhhHH--------------------------
Q psy14128 296 --------------SHAFSK----KLAA---AKKPLIVVGADML-SRSDGAAVL-------------------------- 327 (393)
Q Consensus 296 --------------g~~~~~----~~~~---~~~al~v~g~np~-~~p~~~~v~-------------------------- 327 (393)
+....+ +..+ .+|++|++|.||+ +.||...++
T Consensus 400 ~~p~~~~~g~~~~~~~~~~~l~~~~~~g~py~ik~l~~~g~Np~~~~p~~~~~~~aL~~ld~~V~~d~~~teTa~~ADvv 479 (765)
T 2vpz_A 400 GFKPRADKGKFFARSTAIQELIEPMITGEPYPIKGLFAYGINLFHSIPNVPRTKEALKNLDLYVAIDVLPQEHVMWADVI 479 (765)
T ss_dssp SSCCCTTTTSSSSCSCCTTTTTSHHHHCCSSCCCCEEEESCCHHHHSSCHHHHHHHHHTCSCEEEEESSCCTTTTTCSSE
T ss_pred cCCcccccccccCCcccHHHHHHHHHcCCCCCceEEEEcCCCccccCCCHHHHHHHHhcCCeEEEEecCCCchHHhcCEe
Confidence 111112 3333 3899999999998 899987655
Q ss_pred --------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHHHhccccC
Q psy14128 328 --------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALD 364 (393)
Q Consensus 328 --------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a~~~g~~d 364 (393)
+++|..+++++|+|++|+||+| +.++|+++|..+
T Consensus 480 LP~a~~~E~~g~~~~~~~~~~~v~~~~~~v~P~ge~r~d~~I---~~~La~~lg~~~ 533 (765)
T 2vpz_A 480 LPEATYLERYDDFVLVAHKTPFIQLRTPAHEPLFDTKPGWWI---ARELGLRLGLEQ 533 (765)
T ss_dssp EEBCCTTSCCCCCEEECBSSCEEECCCCSSCCCTTCBCHHHH---HHHHHHHTTCTT
T ss_pred ecCCcccccccccccCCCCCceEEEeecccCCCCCCcCHHHH---HHHHHHHhCCcc
Confidence 4799999999999999999999 677777887543
No 8
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=99.97 E-value=4.9e-31 Score=290.10 Aligned_cols=218 Identities=11% Similarity=0.089 Sum_probs=177.9
Q ss_pred chHHhhhhhcCCCEEEe--CCceeeeChHHHHHHHHHHHHHhc--c-------C-----CCceEEEcCcccHHHHHHHHH
Q psy14128 67 HPFSKKLSAAKKPLIVV--GADMLSRSDGAAVLALVQQLAAKV--T-------C-----ESDVAGVVGSLADAEAMVALK 130 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~--g~~~~~~~~~~al~~~a~~l~~~~--~-------g-----~~sv~~l~g~~~t~E~~~~~~ 130 (393)
.++..+.+|+++||+|. +++|++++|++||+.+|++|.+.. | | +++++.+.|++.++|+.|+++
T Consensus 99 ~~~~~~pdRl~~Pl~R~~g~g~~~~iSWdeAl~~iA~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~ 178 (1015)
T 1kqf_A 99 LDYVNSENRLRYPEYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQ 178 (1015)
T ss_dssp HHHHTCTTBCCSCEEECTTCSSCEECCHHHHHHHHHHHHHHHHHHHCEEECTTSCEEEEBCSEEEECCTTSCHHHHHHHH
T ss_pred HHHhcCcchhcCCEEeccCCCceeECCHHHHHHHHHHHHHHHHhhhcccccccCcccccCceEEEEeCCCCccHHHHHHH
Confidence 46777889999999997 478999999999999999997642 3 3 688999999999999999999
Q ss_pred HHHHHhCCCCccccCCCCccchhhhhhhccc---CCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEE
Q psy14128 131 DLLNKLGSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYI 207 (393)
Q Consensus 131 k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi 207 (393)
||++.+|++|+++..++|+.....++...++ ++.++.|+++||+||+||+|+.+++|+...+++++.+++|+|||||
T Consensus 179 ~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~~~~~D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivI 258 (1015)
T 1kqf_A 179 KFARSLGMLAVDNQARVXHGPTVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVV 258 (1015)
T ss_dssp HHHHHTTBCCEECGGGGTTHHHHHHHHHHHSCCSCSSCTGGGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEE
T ss_pred HHHHHhCCCCcCCcccccccHHHHHHHHHhCCCCCCCCHHHHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEE
Confidence 9999999999998888887543333333332 3567899999999999999999999999999999874589999999
Q ss_pred cCCCCcccc--ccc----cCCCHHHHHHHHc-------------------------------------------------
Q psy14128 208 GPKVDLRYD--YEH----LGESADLIKQLAS------------------------------------------------- 232 (393)
Q Consensus 208 ~p~~~~~~~--~~~----lg~~~~~l~~l~~------------------------------------------------- 232 (393)
||+.+.+.. ..| +|+|.+++.+|+.
T Consensus 259 DPr~t~ta~~AD~~l~irPGTD~AL~lam~~~ii~~~l~D~~fv~~~t~~~~LV~~d~~f~~g~~~g~d~~~~~~~~~~~ 338 (1015)
T 1kqf_A 259 DPRFTRTASVADIYAPIRSGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSW 338 (1015)
T ss_dssp CSSCCHHHHTCSEEECCCTTCHHHHHHHHHHHHHHTTCSCHHHHHHHBSTTBBBCTTCCEETTEETTEETTTTEECCTTS
T ss_pred eCCCCchhHhhCeeeccCCCchHHHHHHHHHHHHHcCCcCHHHHHhhcCcceeeccccccccccccccccccccccccch
Confidence 998776633 333 4666554333210
Q ss_pred ------------------------------------------c-----HHHHHHHHHhC----CCCEEEEcCccccccCH
Q psy14128 233 ------------------------------------------G-----SHAFSKKLAAA----KKPLIVVGADMLSRSDG 261 (393)
Q Consensus 233 ------------------------------------------g-----~~~~a~~l~~a----~~~~ii~G~~~~~~~~~ 261 (393)
| ++++|+.|+++ ++++|++|+|+.+|.+|
T Consensus 339 ~y~~~~~g~~~~~~~~~~~~tvf~~l~~~~~~ytpe~aa~itGvp~e~I~~lA~~~a~a~~~~~~~~i~~g~G~~~~~~G 418 (1015)
T 1kqf_A 339 NYQLDENGYAKRDETLTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTTTFLYALGWTQHTVG 418 (1015)
T ss_dssp SBCBCTTSSBCBCTTSCSTTBHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHGGGSTTCCEEEEESHHHHSSTTH
T ss_pred hhhhccCCcccccccccccchHHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhccCCCCcEEEEECccccccCcH
Confidence 1 57789999998 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcccCCCc
Q psy14128 262 AAVLALVQQLAAKVTCESDHLGES 285 (393)
Q Consensus 262 ~~~~~~~~~l~~~tg~~~~~~~~~ 285 (393)
.....++.+|+.+|| +++..+.+
T Consensus 419 ~~~~rai~~L~~ltG-nig~pGgg 441 (1015)
T 1kqf_A 419 AQNIRTMAMIQLLLG-NMGMAGGG 441 (1015)
T ss_dssp HHHHHHHHHHHHHHT-CTTCTTCS
T ss_pred HHHHHHHHHHHHHhC-CCCCCCcc
Confidence 999999999999999 67666653
No 9
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=99.97 E-value=8.6e-31 Score=287.20 Aligned_cols=217 Identities=14% Similarity=0.145 Sum_probs=176.2
Q ss_pred chHHhhhhhcCCCEEEe--CCceeeeChHHHHHHHHHHHHHhc--c-------C-----CCceEEEcCcccHHHHHHHHH
Q psy14128 67 HPFSKKLSAAKKPLIVV--GADMLSRSDGAAVLALVQQLAAKV--T-------C-----ESDVAGVVGSLADAEAMVALK 130 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~--g~~~~~~~~~~al~~~a~~l~~~~--~-------g-----~~sv~~l~g~~~t~E~~~~~~ 130 (393)
.++..+.+|+++||+|. +++|++++|++|++.+|++|.+.. + | +++++++.|++.++|+.|+++
T Consensus 61 ~~~~~~pdRl~~Pl~R~rg~g~~~~iSWdeAl~~ia~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~ 140 (977)
T 1h0h_A 61 WQLAENERRPANPLYRAPGSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQ 140 (977)
T ss_dssp HHHHSCTTSCSSCEEECTTCSSCEECCHHHHHHHHHHHHHHHHHHHEEEECTTSCEEEEECSEEEECCTTSCHHHHHHHH
T ss_pred HHHhcCcccccCCEEeccCCCCeeecCHHHHHHHHHHHHHHHHHhhcccccccccccccCceEEEEeCCCcccHHHHHHH
Confidence 35667889999999997 478999999999999999997642 2 4 678999999999999999999
Q ss_pred HHHHHhCCCCccccCCCCccchhhhhhhccc---CCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEE
Q psy14128 131 DLLNKLGSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYI 207 (393)
Q Consensus 131 k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi 207 (393)
||++.+|++|+++..++|..+...++...++ ++.++.|+++||+||+||+|+.+++|....+++++. ++|+|||+|
T Consensus 141 ~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~~~~~D~~~ad~il~~G~N~~~~~p~~~~~~~~a~-~~G~klivI 219 (977)
T 1h0h_A 141 AWLRSLGLFYIEHQARIXHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPISFKWVMRAK-DKGATLIHV 219 (977)
T ss_dssp HHHHHTTBCCEECTHHHHTHHHHHHHHHHHSCCSCSSCTGGGGGCSEEEEESCCHHHHSTTHHHHHHHHH-HTTCEEEEE
T ss_pred HHHHHcCCCccccccccccchHHHHHHHHhCCCCCCCCHHHHhhCCEEEEECCChHHhCcHHHHHHHHHH-HCCCeEEEE
Confidence 9999999999998776776543334443332 456789999999999999999999999999999987 589999999
Q ss_pred cCCCCcccc--ccc----cCCCHHHHHHHHc-------------------------------------------------
Q psy14128 208 GPKVDLRYD--YEH----LGESADLIKQLAS------------------------------------------------- 232 (393)
Q Consensus 208 ~p~~~~~~~--~~~----lg~~~~~l~~l~~------------------------------------------------- 232 (393)
||+.+.+.. ..| +|+|.+++.+|+.
T Consensus 220 DPr~t~ta~~AD~~l~irPGTD~AL~~am~~~ii~~~l~D~~fv~~~t~~~~lV~~~~~~~~g~~~g~d~~~~~~~~~~~ 299 (977)
T 1h0h_A 220 DPRYTRTSTKCDLYAPLRSGSDIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKW 299 (977)
T ss_dssp CSSCCTTGGGCSEEECCCTTCHHHHHHHHHHHHHHTTCSCHHHHHHHBGGGBBBCTTCCEETTEETTEETTTTEECGGGG
T ss_pred CCCCCchhHHhCeeeccCCCchHHHHHHHHHHHHHCCcccHHHHHHhcccccccccccccccccccccccccccccccch
Confidence 998776643 333 4666554332210
Q ss_pred ------------------------------------------c-----HHHHHHHHHhC----CCCEEEEcCccccccCH
Q psy14128 233 ------------------------------------------G-----SHAFSKKLAAA----KKPLIVVGADMLSRSDG 261 (393)
Q Consensus 233 ------------------------------------------g-----~~~~a~~l~~a----~~~~ii~G~~~~~~~~~ 261 (393)
| ++++|+.|+++ ++++|++|+|+.++.+|
T Consensus 300 ~~~l~~dg~~~~~~~l~~~~t~f~~l~~~~~~ytpe~aa~itGvp~~~I~~lA~~~a~~~~~~~~~~i~~g~G~~~~~~G 379 (977)
T 1h0h_A 300 GFERDENGNPKRDETLKHPRCVFQIMKKHYERYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIMYAMGWTQHTVG 379 (977)
T ss_dssp CBCBCTTSCBCBCTTSCSTTBHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHGGGSTTCCEEEEECCCCSSHHHH
T ss_pred hhhhcccccccccccccccccHHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHHhccCCCCceEEEEcccccccchH
Confidence 1 57789999998 88999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcccCCCc
Q psy14128 262 AAVLALVQQLAAKVTCESDHLGES 285 (393)
Q Consensus 262 ~~~~~~~~~l~~~tg~~~~~~~~~ 285 (393)
.....++.+|+.++| +++..+.+
T Consensus 380 ~~~~~ai~~L~~ltG-nig~~Ggg 402 (977)
T 1h0h_A 380 VQNIRAMSINQLLLG-NIGVAGGG 402 (977)
T ss_dssp HHHHHHHHHHHHHTT-CSSSTTCS
T ss_pred HHHHHHHHHHHHHhC-CCCCCCcc
Confidence 999999999999999 67766554
No 10
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Probab=99.96 E-value=1.4e-29 Score=273.81 Aligned_cols=283 Identities=12% Similarity=0.092 Sum_probs=215.5
Q ss_pred hhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHh--ccCCCceEEE----cCcccHHHHHHHHHHHHHH-hCCCCccccC
Q psy14128 73 LSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAK--VTCESDVAGV----VGSLADAEAMVALKDLLNK-LGSEDLYTEY 145 (393)
Q Consensus 73 l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l----~g~~~t~E~~~~~~k~~~~-lGt~nid~~~ 145 (393)
.+|+++||+|.|++|++++|++|++.++++|.+. +||+++++++ +|++.++|+.|+++|+++. +||+|++++.
T Consensus 117 ~dRL~~Pl~R~~g~~~~iSWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~s~~~~~e~~~~~~k~~~~~lGt~n~~~~~ 196 (825)
T 1g8k_A 117 KERLSAPRLYAADEWVDTTWDHAMALYAGLIKKTLDKDGPQGVFFSCFDHGGAGGGFENTWGTGKLMFSAIQTPMVRIHN 196 (825)
T ss_dssp TTCCCSCEEECSSSEEECCHHHHHHHHHHHHHHHHHHTCGGGEEEEECCCSSTTCSHHHHHHHHHHHHTTTCCCCEEETT
T ss_pred cccccCCeEecCCceEEccHHHHHHHHHHHHHHHHHhhCCceEEEEecccccCCcccHHHHHHHHHHHHhcCCceecccc
Confidence 3899999999999999999999999999999764 4899999987 6778899999999998875 9999999765
Q ss_pred CCCccc--h-hhhhhhcccCCCCccCccccCEEEEecCCcCccccHHHHH-H----HH----hhh-------cCCceEEE
Q psy14128 146 AFPLEG--A-GTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNAR-I----RK----GYL-------TNELDVAY 206 (393)
Q Consensus 146 ~~~~~~--~-~~~~~~~~~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~r-l----r~----a~~-------~~gakiiv 206 (393)
++|+.. . ...+ ....++.++.|+++||+||+||+|+.+++|.++.+ . ++ +.+ ++|+|||+
T Consensus 197 r~~~~~~c~~~~~~-G~~~~~~~~~D~~~ad~il~~G~Np~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~kliv 275 (825)
T 1g8k_A 197 RPAYNSECHATREM-GIGELNNAYEDAQLADVIWSIGNNPYESQTNYFLNHWLPNLQGATTSKKKERFPNENFPQARIIF 275 (825)
T ss_dssp BSSSCCTTHHHHHT-TCCSCCSCHHHHHHCSEEEEESCCHHHHSHHHHHHTHHHHHHTTTHHHHHHHCTTCCCCCCEEEE
T ss_pred cccccceeeccccc-cCCCCCCCHHHHHhCCEEEEeCCChHHhCcchHhhhHHHhhhhhHHHHhhhhccccccCCCEEEE
Confidence 433211 0 1111 11234667899999999999999999999987632 2 21 111 25999999
Q ss_pred EcCCCCcccc--c--------ccc----CCCHHHHHHHHc-----c----------------------------------
Q psy14128 207 IGPKVDLRYD--Y--------EHL----GESADLIKQLAS-----G---------------------------------- 233 (393)
Q Consensus 207 i~p~~~~~~~--~--------~~l----g~~~~~l~~l~~-----g---------------------------------- 233 (393)
|||+.+.++. . .|+ |+|.+++.+|+. +
T Consensus 276 IDPr~t~ta~~Ad~~~~~~a~~~l~irPGtD~al~~al~~~ii~~~l~D~~Fv~~~t~Gfd~~~~~~~~tpe~~a~itGv 355 (825)
T 1g8k_A 276 VDPRETPSVAIARHVAGNDRVLHLAIEPGTDTALFNGLFTYVVEQGWIDKPFIEAHTKGFDDAVKTNRLSLDECSNITGV 355 (825)
T ss_dssp ECSSCCHHHHHHHHHHCGGGEEEECCCTTCHHHHHHHHHHHHHHHTCSCHHHHHHHEECHHHHHHHTCCCHHHHHHHHCC
T ss_pred EeCCCCchhhhhhhccccccceEeccCCCcHHHHHHHHHHHHHHcCCcCHHHHHHhcCCHHHHHhhccCCHHHHHHHHCc
Confidence 9998777632 1 454 777776655431 1
Q ss_pred ----HHHHHHHHHhC------CCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccccccccccC-------C
Q psy14128 234 ----SHAFSKKLAAA------KKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASG-------S 296 (393)
Q Consensus 234 ----~~~~a~~l~~a------~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n~~G~~~~g-------g 296 (393)
++++|+.|+++ ++++|++|+++.++.++.....++.+|+.++| +++.++.+.+.++....| |
T Consensus 356 ~~~~I~~~A~~~a~a~~~~~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~~l~G-nig~~Ggg~~~~~~~~~g~~~~~~~g 434 (825)
T 1g8k_A 356 PVDMLKRAAEWSYKPKASGQAPRTMHAYEKGIIWGNDNYVIQSALLDLVIATH-NVGRRGTGCVRMGGHQEGYTRPPYPG 434 (825)
T ss_dssp CHHHHHHHHHHHHSCCTTSCCCCEEEEECHHHHTSTTHHHHHHHHHHHHHHTT-CSSSTTCCEEECCSBCBCCEECCCSC
T ss_pred CHHHHHHHHHHHHhcccccCCCceEEEEccchhhhhcCHHHHHHHHHHHHHhC-CCCCCCCCcCCCCcCCCCCCCCCCCC
Confidence 47789999987 48899999999999999999999999999999 688888877765533221 2
Q ss_pred Cc---HHHHh-hcccCcEEEEcCCCC-CCCChh-----------------------------------------hHH---
Q psy14128 297 HA---FSKKL-AAAKKPLIVVGADML-SRSDGA-----------------------------------------AVL--- 327 (393)
Q Consensus 297 ~~---~~~~~-~~~~~al~v~g~np~-~~p~~~-----------------------------------------~v~--- 327 (393)
.. +.+.+ .+.++++|++|.||+ +.|+.. .++
T Consensus 435 ~~~~~~~~~~~~g~~k~l~~~g~Np~~~~p~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~fvVv~d 514 (825)
T 1g8k_A 435 DKKIYIDQELIKGKGRIMTWWGCNNFQTSNNAQALREAILQRSAIVKQAMQKARGATTEEMVDVIYEATQNGGLFVTSIN 514 (825)
T ss_dssp SSCCCHHHHHHTTCCSEEEEESCCHHHHSTTHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cchhhhhhHhhCCCceEEEEEecCcccCCcCHHHHHHHHHccchhhhhhhhcccCcchhHHHHHHHHHhccCCCEEEEEe
Confidence 22 34433 457899999999997 777642 111
Q ss_pred ------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHHH
Q psy14128 328 ------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKAA 357 (393)
Q Consensus 328 ------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~a 357 (393)
+++|..+++++|||++|+||+||..|++..
T Consensus 515 ~~~teTa~~ADvVLPaa~~~E~~g~~~~~~~~v~~~~~~v~P~gear~d~~Il~~La~~l 574 (825)
T 1g8k_A 515 LYPTKLAEAAHLMLPAAHPGEMNLTSMNGERRIRLSEKFMDPPGTAMADCLIAARIANAL 574 (825)
T ss_dssp SSCCGGGGTCSEEEEBCCBTTBCEEEECTTCEEEEECCCSCCSTTCBCHHHHHHHHHHHH
T ss_pred cccCchHhhCeEEeCCCCCCcCCceEecCcceEEEeecccCCccccCCHHHHHHHHHHHH
Confidence 799999999999999999999965555443
No 11
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=99.96 E-value=2.4e-29 Score=270.42 Aligned_cols=288 Identities=13% Similarity=0.102 Sum_probs=215.4
Q ss_pred chHHhhhhhcCCCEEEe---------------CCceeeeChHHHHHHHHHHHHHh--ccCCCceEEE----cCcccHHHH
Q psy14128 67 HPFSKKLSAAKKPLIVV---------------GADMLSRSDGAAVLALVQQLAAK--VTCESDVAGV----VGSLADAEA 125 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~---------------g~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l----~g~~~t~E~ 125 (393)
.++..+.+|+++||+|. +++|++++|++|++.++++|.+. +||+++|+.+ .|+..++|+
T Consensus 46 ~~~~~~pdRl~~Pl~R~~~~~~~~~~~~g~rG~g~~~~iSWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~g~~~~~ 125 (780)
T 1eu1_A 46 LDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWDEALDLVARELKRVQESYGPTGTFGGSYGWKSPGRLHNC 125 (780)
T ss_dssp HHTTTSTTBCCSCEEEHHHHHHGGGSCGGGTTSSCEEECCHHHHHHHHHHHHHHHHHHHCGGGEECCCCCCCCCCSSCCH
T ss_pred hhhhcChhhhcCCeeeccccccCCCCcccCCCCCCeEEecHHHHHHHHHHHHHHHHHHhCCceEEecccCCcccccccch
Confidence 35677789999999996 37899999999999999999764 4899998653 334445667
Q ss_pred HHHHHHHHHHhCCCCccccCCCCccchhhhhhhcc------cCCCCcc-CccccCEEEEecCCcCccccH--------HH
Q psy14128 126 MVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANY------LLNNKIA-GAEEADLILLIGTNPRFEAPL--------FN 190 (393)
Q Consensus 126 ~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~------~~~~~~~-~ie~AD~IL~iG~n~~~~~p~--------l~ 190 (393)
.++++||++.+|+ ++++...+|.......+...+ +.+.++. ++++||+||+||+|+.+++|+ +.
T Consensus 126 ~~~~~~f~~~~G~-~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~ 204 (780)
T 1eu1_A 126 QVLMRRALNLAGG-FVNSSGDYSTAAAQIIMPHVMGTLEVYEQQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAY 204 (780)
T ss_dssp HHHHHHHHHHHTC-CBEEESCSSSTTHHHHHHHHTSSCCTTSCCSCHHHHHHHCSEEEEESCCHHHHTTCCSSBCCCHHH
T ss_pred hHHHHHHHHhcCC-CcCCCCCcccchhhhccCceeccccccCCCCCcHhHHhhCCEEEEECCCHHHhcCCCCcccccchH
Confidence 8889999999997 567666667643222222111 2234455 689999999999999999886 45
Q ss_pred HHHHHhhhcCCceEEEEcCCCCcccc---ccc----cCCCHHHHHHHH----------------------------c---
Q psy14128 191 ARIRKGYLTNELDVAYIGPKVDLRYD---YEH----LGESADLIKQLA----------------------------S--- 232 (393)
Q Consensus 191 ~rlr~a~~~~gakiivi~p~~~~~~~---~~~----lg~~~~~l~~l~----------------------------~--- 232 (393)
.+++++. ++|+|||+|||+.+.+.. ..| +|+|.+++.+|+ .
T Consensus 205 ~~l~~a~-~~G~klivIDPr~t~ta~~aad~~l~irPGtD~AL~~am~~~ii~e~l~D~~fi~~~t~Gfe~~~~~v~~~~ 283 (780)
T 1eu1_A 205 AGMKALK-EKGTRVIAINPVRTETADYFGADVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGES 283 (780)
T ss_dssp HHHHHHH-HHTCEEEEESSBCCHHHHHHTCEEECCCTTCHHHHHHHHHHHHHHTTCSCHHHHHHHEECHHHHHHHHTTTT
T ss_pred HHHHHHH-HCCCeEEEECCCCCCcccccCCEEeeeCCCCHHHHHHHHHHHHHHCCCccHHHHHHhhhcHHHHHHHhcCCc
Confidence 7788886 579999999998776622 334 467766554431 0
Q ss_pred -------------------cHHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCcc------c
Q psy14128 233 -------------------GSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESA------D 287 (393)
Q Consensus 233 -------------------g~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~------n 287 (393)
-++++|+.|++++ ++|++|.++.++.++.....++.+|+.++| +++..+.+. |
T Consensus 284 dg~~~tpe~aa~itGv~~~~I~~~A~~~a~~~-~~i~~g~g~~~~~~g~~~~~ai~~L~~ltG-nig~~Ggg~~~~~~~n 361 (780)
T 1eu1_A 284 DGTPKTAEWAAEICGLPAEQIRELARSFVAGR-TMLAAGWSIQRMHHGEQAHWMLVTLASMIG-QIGLPGGGFGLSYHYS 361 (780)
T ss_dssp TSCCCCHHHHHHHHCSCHHHHHHHHHHHHSSC-EEEEECSGGGSSTTTHHHHHHHHHHHHHHT-CTTSTTCEEESCTTST
T ss_pred CCCcCCHHHHHHHHCcCHHHHHHHHHHHHhcC-CEEEeechHhHHhhhHHHHHHHHHHHHHhC-CCCCCCCccccccccc
Confidence 1467899999887 899999999999999999999999999999 677665542 4
Q ss_pred cccccccC----------CC-------------------cHHHHhhc---------------ccCcEEEEcCCCC-CCCC
Q psy14128 288 LIKQLASG----------SH-------------------AFSKKLAA---------------AKKPLIVVGADML-SRSD 322 (393)
Q Consensus 288 ~~G~~~~g----------g~-------------------~~~~~~~~---------------~~~al~v~g~np~-~~p~ 322 (393)
.+|...++ |. .+.+++.. .+|++|++|.||+ ++||
T Consensus 362 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~g~~~~~~~ik~l~~~g~Np~~~~pd 441 (780)
T 1eu1_A 362 NGGSPTSDGPALGGISDGGKAVEGAAWLSESGATSIPCARVVDMLLNPGGEFQFNGATATYPDVKLAYWAGGNPFAHHQD 441 (780)
T ss_dssp TTTSCCCSCCCCCCCCCCC---CC-------CCSEEEGGGHHHHHHCTTCEEEETTEEEECCCCCEEEEESCCHHHHSSC
T ss_pred cCCCcccccCCCCCCCCCCCCCchhhhhhhccccccCHHHHHHHHhcCCCccccCCcccCCCCeeEEEEeCCChhhcCcc
Confidence 44432211 11 12344422 5899999999998 9999
Q ss_pred hhhHH----------------------------------------------HHhhhhhhccCCCCCCCcchHHHHHHHHH
Q psy14128 323 GAAVL----------------------------------------------ALVQQLAAKVTCESDVPCDWKVLNILQKA 356 (393)
Q Consensus 323 ~~~v~----------------------------------------------~~vq~~~~av~~~g~~~~dw~i~~~l~~~ 356 (393)
...++ +++|..+++++|+|++|+||+| +.++
T Consensus 442 ~~~~~~al~~ldf~Vv~d~~~teTa~~ADvVLP~a~~~E~~g~~~~~~~~~~~v~~~~~~v~P~gear~d~~I---~~~L 518 (780)
T 1eu1_A 442 RNRMLKAWEKLETFIVQDFQWTATARHADIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDI---FAAL 518 (780)
T ss_dssp HHHHHHHGGGCSEEEEEESBCCHHHHTCSEEEEBCCGGGSCEEEEECTTTCCEEEEECCCSCCCTTCBCHHHH---HHHH
T ss_pred HHHHHHHHhcCCeEEEeccccCcchhhccEeccCCcccccCCccccccCCCceEEEeecccCCcccCCCHHHH---HHHH
Confidence 87765 6789999999999999999999 5666
Q ss_pred HHhcc
Q psy14128 357 ASQVA 361 (393)
Q Consensus 357 a~~~g 361 (393)
|+++|
T Consensus 519 a~rlg 523 (780)
T 1eu1_A 519 AERLG 523 (780)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 67776
No 12
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=99.96 E-value=5.6e-29 Score=269.21 Aligned_cols=288 Identities=14% Similarity=0.097 Sum_probs=216.1
Q ss_pred chHHhhhhhcCCCEEEeC---------------CceeeeChHHHHHHHHHHHHHh--ccCCCceEEE----cCcccHHHH
Q psy14128 67 HPFSKKLSAAKKPLIVVG---------------ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGV----VGSLADAEA 125 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~g---------------~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l----~g~~~t~E~ 125 (393)
.++..+.+|+++||+|.| ++|++++|++|++.++++|.+. +||++++++. .+...++|+
T Consensus 79 ~~~~~~pdRl~~Pl~R~g~~~~~~~~~~~~rG~g~~~~iSWdeAl~~ia~~l~~i~~~~G~~~i~~~~~g~~~~g~~~~~ 158 (829)
T 1tmo_A 79 RGMVYNPSRVRYPMVRLDFLLKGHKSNTHQRGDFRFVRVTWDKALTLFKHSLDEVQTQYGPSGLHAGQTGWRATGQLHSS 158 (829)
T ss_dssp HHHHSCTTBCCSCEEEHHHHHHGGGSCGGGTTSCEEEECCHHHHHHHHHHHHHHHHHHTCGGGEECCCCCCCCSCTTTCH
T ss_pred hhhhcChhhcCCcceecccccCCCCcccccCCCCCeEEecHHHHHHHHHHHHHHHHHhhCCceEEeccccCcccccccch
Confidence 467778899999999975 7899999999999999999754 5899998652 333445677
Q ss_pred HHHHHHHHHHhCCCCccccCCCCccchhhhhhhcc------cCCCCccC-ccccCEEEEecCCcCccccH--------HH
Q psy14128 126 MVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANY------LLNNKIAG-AEEADLILLIGTNPRFEAPL--------FN 190 (393)
Q Consensus 126 ~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~------~~~~~~~~-ie~AD~IL~iG~n~~~~~p~--------l~ 190 (393)
.++++||++.+|+ ++++...+|.......+...+ +.+.++.+ +++||+||+||+|+.+++|+ +.
T Consensus 159 ~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ad~il~~G~Np~~~~~~~~~~~~~~~~ 237 (829)
T 1tmo_A 159 TSHMQRAVGMHGN-YVKKIGDYSTGAGQTILPYVLGSTEVYAQGTSWPLILEHSDTIVLWSNDPYKNLQVGWNAETHESF 237 (829)
T ss_dssp HHHHHHHHHTTCC-CBEEECCSSSTTHHHHHHHHTSSCCTTSCCCCHHHHHHHCSEEEEESCCHHHHTSCCSSBCCCTHH
T ss_pred hHHHHHHHHhcCC-cccCCCCcchhhhhhcccceEecccccCCCCchHhhHhhCCEEEEECCChhhccccccccccchHH
Confidence 8999999999996 577766667653222222211 22445666 79999999999999999986 66
Q ss_pred HHHHHhhhc---CCc-eEEEEcCCCCcccc---ccc----cCCCHHHHHHHHc------------------c--------
Q psy14128 191 ARIRKGYLT---NEL-DVAYIGPKVDLRYD---YEH----LGESADLIKQLAS------------------G-------- 233 (393)
Q Consensus 191 ~rlr~a~~~---~ga-kiivi~p~~~~~~~---~~~----lg~~~~~l~~l~~------------------g-------- 233 (393)
.+++++. + +|+ |||||||+.+.+.. ..| +|+|.+++.+|+. |
T Consensus 238 ~~~~~a~-~~~~~G~~klivIDPr~t~ta~~a~d~~l~irPGtD~al~~a~~~~ii~e~l~D~~fi~~~t~gf~~~~~~v 316 (829)
T 1tmo_A 238 AYLAQLK-EKVKQGKIRVISIDPVVTKTQAYLGCEQLYVNPQTDVTLMLAIAHEMISKKLYDDKFIQGYSLGFEEFVPYV 316 (829)
T ss_dssp HHHHHHH-HHHHHTSSEEEEECSSCCHHHHHHTCEEECCCTTCHHHHHHHHHHHHHHTTCSCHHHHHHHEECHHHHHHHH
T ss_pred HHHHHHH-HHhhCCCceEEEECCCCCCcchhhcCEEecccCCCHHHHHHHHHHHHHHCCcccHHHHHHhcccHHHHHHHh
Confidence 7777775 4 799 99999998776622 344 4677665544321 1
Q ss_pred ------------------------HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCc----
Q psy14128 234 ------------------------SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGES---- 285 (393)
Q Consensus 234 ------------------------~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~---- 285 (393)
++++|+.|+++ +++|++|.++.++.++.....++.+|+.++| +++..+.+
T Consensus 317 ~~~~dg~~~tpe~aa~itGv~~~~I~~~A~~~a~~-~~~i~~g~g~~~~~~g~~~~~ai~~L~~ltG-nig~~Ggg~~~~ 394 (829)
T 1tmo_A 317 MGTKDGVAKTPEWAAPICGVEAHVIRDLAKTLVKG-RTQFMMGWCIQRQQHGEQPYWMAAVLATMIG-QIGLPGGGISYG 394 (829)
T ss_dssp HTTTTSCCCCHHHHHHHHTCCHHHHHHHHHHHHHS-CEEEEECSGGGSSTTTHHHHHHHHHHHHHHT-CTTSTTCEEESC
T ss_pred cCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHhcC-CCEEEeccchhhhhhhHHHHHHHHHHHHHhC-CCCCCCCCcccc
Confidence 46788999875 7899999999999999999999999999999 56665543
Q ss_pred --ccccccccc------C----------C----------------CcHHHHhhc---------------ccCcEEEEcCC
Q psy14128 286 --ADLIKQLAS------G----------S----------------HAFSKKLAA---------------AKKPLIVVGAD 316 (393)
Q Consensus 286 --~n~~G~~~~------g----------g----------------~~~~~~~~~---------------~~~al~v~g~n 316 (393)
.|.+|...+ + + ..+.+++.. .+|++|++|.|
T Consensus 395 ~~~n~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~~~~~~~ik~l~~~g~N 474 (829)
T 1tmo_A 395 HHYSSIGVPSSGAAAPGAFPRNLDENQKPLFDSSDFKGASSTIPVARWIDAILEPGKTIDANGSKVVYPDIKMMIFSGNN 474 (829)
T ss_dssp TTSTTTTSCCCCCCCCCCCCSSCCTTCCCSSCCCCCTTSCSEEEGGGHHHHHHSTTCEEECSSSEEECCCCCEEEEESCC
T ss_pred cccccCCCccccccCCccCCccccccccccCChhHhhcccccccHhHHHHHHhCCCCccccCCcccCCCCeEEEEEeCCC
Confidence 355553321 0 0 113444422 58999999999
Q ss_pred CC-CCCChhhHH----------------------------------------------HHhhhhhhccCCCCCCCcchHH
Q psy14128 317 ML-SRSDGAAVL----------------------------------------------ALVQQLAAKVTCESDVPCDWKV 349 (393)
Q Consensus 317 p~-~~p~~~~v~----------------------------------------------~~vq~~~~av~~~g~~~~dw~i 349 (393)
|+ ++||.+.++ +++|.++++++|+|++|+||+|
T Consensus 475 p~~~~p~~~~~~~aL~~ldf~Vv~d~~~teTa~~ADvvLP~a~~~E~~g~~~~~~~~~~~v~~~~~~v~P~gear~d~~I 554 (829)
T 1tmo_A 475 PWNHHQDRNRMKQAFHKLECVVTVDVNWTATCRFSDIVLPACTTYERNDIDVYGAYANRGILAMQKMVEPLFDSLSDFEI 554 (829)
T ss_dssp HHHHSSCHHHHHHHHTTCSEEEEEESBCCHHHHTCSEEEEBCCGGGSCEEEEECTTTCCEEEEECCCSCCCTTCBCHHHH
T ss_pred ccccCcCHHHHHHHHhCCCeEEEecCcCCchhhhccEeccCCchhccCCccccccCCCceEEEEecccCCcccCcCHHHH
Confidence 98 999987765 6799999999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy14128 350 LNILQKAASQVA 361 (393)
Q Consensus 350 ~~~l~~~a~~~g 361 (393)
+.++|+++|
T Consensus 555 ---~~~La~~lg 563 (829)
T 1tmo_A 555 ---FTRFAAVLG 563 (829)
T ss_dssp ---HHHHHHHTT
T ss_pred ---HHHHHHHhC
Confidence 566667776
No 13
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=99.95 E-value=2.2e-28 Score=268.27 Aligned_cols=221 Identities=14% Similarity=0.063 Sum_probs=171.8
Q ss_pred HHccC--chHHhhhhhcCCCEEEeC----CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEcCcccHHH-HHHHHHHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVVG----ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVVGSLADAE-AMVALKDL 132 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~g----~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~g~~~t~E-~~~~~~k~ 132 (393)
|.+|. .++..+.+|+++||+|+| ++|++++|++|++.+|++|.+. +||+++++++.|...+.+ ..++++||
T Consensus 127 C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~~iSWdeAl~~IA~~l~~i~~~~Gp~~i~~~~~~~~~~~~~~~~~~rf 206 (976)
T 2ivf_A 127 CQKGSAFNNNLYGDERVKYPLKRVGKRGEGKWKRVSWDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAWGAGFRM 206 (976)
T ss_dssp CTTGGGTHHHHTSTTBCCSCEEECSSTTSCCEEECCHHHHHHHHHHHHHHHHHHHGGGGEEECCCCSTTCHHHHHHHHHH
T ss_pred ChhhhhHHHHhcCcccccCCeeeccCCCCCCeEEecHHHHHHHHHHHHHHHHHHhCCceEEEEecCCccchHHHHHHHHH
Confidence 44553 567788999999999986 7899999999999999999754 489999998777555544 45888999
Q ss_pred HHHhCCCCccccCCCCccchhhhhhhcc---cCCCCccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 133 LNKLGSEDLYTEYAFPLEGAGTDLRANY---LLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 133 ~~~lGt~nid~~~~~~~~~~~~~~~~~~---~~~~~~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
++.+|++|+++...+ .+...++..++ ..++++.|+++||+||+||+|+.+++|....+++++. ++|+|||+|||
T Consensus 207 ~~~lG~~n~~~~~~~--~~~~~a~~~~~G~~~~~~~~~D~~nad~Il~~G~N~~~~~p~~~~~~~~ar-~~GakvivVDP 283 (976)
T 2ivf_A 207 TYLMDGVSPDINVDI--GDTYMGAFHTFGKMHMGYSADNLLDAELIFMTCSNWSYTYPSSYHFLSEAR-YKGAEVVVIAP 283 (976)
T ss_dssp HHHHTCBEECHHHHH--TCCCHHHHHHHSCCCCBCCGGGGGGCSEEEEESCCHHHHCTTTHHHHHHHH-HHTCEEEEECS
T ss_pred HHHhCCcccCccccc--cchhhhhhheecCCCCCCChhhHhhCcEEEEeCCChhHcccHHHHHHHHHH-HcCCEEEEECC
Confidence 999999999853322 11112222222 2356789999999999999999999999999999986 58999999999
Q ss_pred CCCcccc--ccc----cCCCHHHHHHHH----------------------------------------------------
Q psy14128 210 KVDLRYD--YEH----LGESADLIKQLA---------------------------------------------------- 231 (393)
Q Consensus 210 ~~~~~~~--~~~----lg~~~~~l~~l~---------------------------------------------------- 231 (393)
+.+.+.. +.| +|+|.+++.+|+
T Consensus 284 r~t~ta~~AD~wl~irPGTD~Al~~am~~~ii~e~l~D~~fv~~~t~g~~lv~~~~g~~l~~~d~~~~~~~~~~~~d~~~ 363 (976)
T 2ivf_A 284 DFNPTTPAADLHVPVRVGSDAAFWLGLSQVMIDEKLFDRQFVCEQTDLPLLVRMDTGKFLSAEDVDGGEAKQFYFFDEKA 363 (976)
T ss_dssp SCCTTGGGCSEEECCCTTCHHHHHHHHHHHHHHTTCSCHHHHHHHBSTTSEEETTTCSBCBHHHHHSCCTTCEEEEETTT
T ss_pred CCCcchhhcCeEeccCCCcHHHHHHHHHHHHHHcCCccHHHHHHhcCCceEEecCCCcccchhhccccCCCceEEEEcCC
Confidence 8776633 333 466655432221
Q ss_pred -------------------------------------------c--------------c-----HHHHHHHHHhCCCCEE
Q psy14128 232 -------------------------------------------S--------------G-----SHAFSKKLAAAKKPLI 249 (393)
Q Consensus 232 -------------------------------------------~--------------g-----~~~~a~~l~~a~~~~i 249 (393)
+ | ++++|+.|++++ ++|
T Consensus 364 g~~~~~~~~~~~~~~~~~l~g~~~~~g~~g~~~~~~t~f~~l~~~~~~~tpe~aa~itGVp~~~I~~lAr~~a~~~-~~i 442 (976)
T 2ivf_A 364 GSVRKASRGTLKLDFMPALEGTFSARLKNGKTIQVRTVFEGLREHLKDYTPEKASAKCGVPVSLIRELGRKVAKKR-TCS 442 (976)
T ss_dssp TEEEEECSSCCCCSSCCCCSCEEEEECTTSCEEEEEEHHHHHHHHGGGGSHHHHHHHHCCCHHHHHHHHHHHHHSC-EEE
T ss_pred CCeecCcccccccccCccceeeEEEecCCCceeeeeeHHHHHHHHhhcCCHHHHHHHHCcCHHHHHHHHHHHHhcc-cee
Confidence 0 1 577899999998 999
Q ss_pred EEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccc
Q psy14128 250 VVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESAD 287 (393)
Q Consensus 250 i~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n 287 (393)
++|+++.++.++.....++.+|..++| +++..+++.+
T Consensus 443 ~~g~G~~~~~~g~~~~rai~~L~~l~G-nig~~Ggg~~ 479 (976)
T 2ivf_A 443 YIGFSSAKSYHGDLMERSLFLAMALSG-NWGKPGTGAF 479 (976)
T ss_dssp EECTTTTTBTTHHHHHHHHHHHHHHTT-CSSSTTCCSC
T ss_pred eecccccchhhHHHHHHHHHHHHHHhC-CCCCCCCccc
Confidence 999999999999999999999999999 6777766554
No 14
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=99.94 E-value=2e-27 Score=258.38 Aligned_cols=215 Identities=13% Similarity=0.039 Sum_probs=158.3
Q ss_pred chHHhhhhhcCCCEEEe-------------C---------CceeeeChHHHHHHHHHHHHHh--ccCCCceEEEc----C
Q psy14128 67 HPFSKKLSAAKKPLIVV-------------G---------ADMLSRSDGAAVLALVQQLAAK--VTCESDVAGVV----G 118 (393)
Q Consensus 67 ~~~~~~l~r~~~PlI~~-------------g---------~~~~~~~~~~al~~~a~~l~~~--~~g~~sv~~l~----g 118 (393)
.++..+.+|+++||+|. | ++|++++|++||+.+|++|.+. +||+++++++. +
T Consensus 67 ~~~~~~pdRl~~Pl~R~~~~~~~~~~~g~rG~~~~~~~~~g~~~~iSWdeAl~~iA~kl~~i~~~~G~~si~~~~~~~~~ 146 (875)
T 1ti6_A 67 KSMIYSDLRIPYPMKRKSFDPNGERNPQLRGAGLSKQDPWSDYERISWDEATDIVVAEINRIKHAYGPSAILSTPSSHHM 146 (875)
T ss_dssp HHHHTCTTBCCSCEEETTCCTTSCCCGGGTTHHHHTTCGGGGEEECCHHHHHHHHHHHHHHHHHHTCGGGEEEECCSCCC
T ss_pred HHhhcCcccccCCeeecccccCCCcCcCCCCccccccccCCCEEEeeHHHHHHHHHHHHHHHHHHhCcceEEeecCCCcc
Confidence 45777889999999996 5 7899999999999999999764 58999998764 3
Q ss_pred cccHHHHHHHHHHHHHHhCCCCccccCC----CCccchhhhhhhc-cc---CCCCccC-ccccCEEEEecCCcCccccHH
Q psy14128 119 SLADAEAMVALKDLLNKLGSEDLYTEYA----FPLEGAGTDLRAN-YL---LNNKIAG-AEEADLILLIGTNPRFEAPLF 189 (393)
Q Consensus 119 ~~~t~E~~~~~~k~~~~lGt~nid~~~~----~~~~~~~~~~~~~-~~---~~~~~~~-ie~AD~IL~iG~n~~~~~p~l 189 (393)
...++|+.++++||++.+|++|+|++.. +|.......+... ++ +..++.+ +++||+||+||+|+ +++|+.
T Consensus 147 ~g~~~~~~~~~~rf~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ad~il~~G~Np-~~~p~~ 225 (875)
T 1ti6_A 147 WGNVGYRHSTYFRFMNMMGFTYADHNPDSWEGWHWGGMHMWGFSWRLGNPEQYDLLEDGLKHAEMIVFWSSDP-ETNSGI 225 (875)
T ss_dssp SCTTTSTTTHHHHHHHHHCCEEEECCCTTTHHHHHTHHHHHCCGGGTTCCCCTTHHHHHHHHCSEEEEESCCH-HHHCSS
T ss_pred cCcccchhHHHHHHHHhcCCCccccCcCccCccchhhhcccccceeeecccccCCcHhHHhcCCEEEEECCCh-hhCCcc
Confidence 3456788899999999999888876543 2332111111112 22 1224555 79999999999999 999874
Q ss_pred H-----HHHHHhhhcCCceEEEEcCCCCccc---cccc----cCCCHHHHHHHHc-------------------------
Q psy14128 190 N-----ARIRKGYLTNELDVAYIGPKVDLRY---DYEH----LGESADLIKQLAS------------------------- 232 (393)
Q Consensus 190 ~-----~rlr~a~~~~gakiivi~p~~~~~~---~~~~----lg~~~~~l~~l~~------------------------- 232 (393)
. .+++...+++|+|||||||+.+.+. ...| +|+|.+++.+|+.
T Consensus 226 ~~~~~~~~~~~~a~~~G~klivIDPr~t~ta~~~Ad~~l~irPGTD~aL~~am~~~ii~e~l~D~~fi~~~t~Gf~~~~~ 305 (875)
T 1ti6_A 226 YAGFESNIRRQWLKDLGVDFVFIDPHMNHTARLVADKWFSPKIGTDHALSFAIAYTWLKEDSYDKEYVAANAHGFEEWAD 305 (875)
T ss_dssp SCTTTTHHHHHHHHHTTCEEEEECSBCCHHHHHHCSEEECCCTTCHHHHHHHHHHHHHHTTCSCHHHHHHHEESHHHHHH
T ss_pred CCCccchHHHHHHHHcCCeEEEECCCCCCcccccCCEEeccCCCcHHHHHHHHHHHHHHccchhHHHHHhhhccHHHHHH
Confidence 2 4555423468999999999877663 2444 4677665544321
Q ss_pred -------------------------cHHHHHHHHHhCCCCEE----EEcCc-cccccCHHHHHHHHHHHHHHhCCCcccC
Q psy14128 233 -------------------------GSHAFSKKLAAAKKPLI----VVGAD-MLSRSDGAAVLALVQQLAAKVTCESDHL 282 (393)
Q Consensus 233 -------------------------g~~~~a~~l~~a~~~~i----i~G~~-~~~~~~~~~~~~~~~~l~~~tg~~~~~~ 282 (393)
-++++|+.|++++ ++| ++|.+ +.++.++.....++.+|+.+|| ++.+
T Consensus 306 ~v~~~~dG~~~tpe~aa~itGv~~~~I~~lA~~~a~~~-~~i~~g~~~g~gG~~~~~~g~~~~~ai~~L~~ltG--ig~~ 382 (875)
T 1ti6_A 306 YVLGKTDGTPKTCEWAEEESGVPACEIRALARQWAKKN-TYLAAGGLGGWGGACRASHGIEWARGMIALATMQG--MGKP 382 (875)
T ss_dssp HHTTTTTSCCCCHHHHHHHHCSCHHHHHHHHHHHHHSC-EEEEETTTTSCCGGGSBTTHHHHHHHHHHHHHHTT--TTST
T ss_pred HhcccccCCcCCHHHHHHHHCcCHHHHHHHHHHHHhcC-CeeecccccccchhhhccccHHHHHHHHHHHHHhC--CCCC
Confidence 0467899999887 777 55778 9999999999999999999998 6666
Q ss_pred CCc
Q psy14128 283 GES 285 (393)
Q Consensus 283 ~~~ 285 (393)
+.+
T Consensus 383 Ggg 385 (875)
T 1ti6_A 383 GSN 385 (875)
T ss_dssp TCE
T ss_pred CCc
Confidence 544
No 15
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=99.92 E-value=2.6e-24 Score=237.46 Aligned_cols=150 Identities=11% Similarity=-0.061 Sum_probs=121.3
Q ss_pred HHccC--chHHhhhhhcCCCEEEe--------------------------------------CCceeeeChHHHHHHHHH
Q psy14128 62 LASGS--HPFSKKLSAAKKPLIVV--------------------------------------GADMLSRSDGAAVLALVQ 101 (393)
Q Consensus 62 i~~~~--~~~~~~l~r~~~PlI~~--------------------------------------g~~~~~~~~~~al~~~a~ 101 (393)
|.+|. .++..+.+|+++||+|. .+.|++++|++|++.+|+
T Consensus 93 C~KG~~~~~~~ysp~RL~~Pl~R~~~~~~~~~~~~~~~~p~~~w~~~~~~~~~~~~~~g~RG~g~f~~iSWDEAld~IA~ 172 (1247)
T 1q16_A 93 CPRGASYSWYLYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAA 172 (1247)
T ss_dssp CHHHHTGGGGTTSTTBCCSCEEEHHHHHHHHHHHTTCSSHHHHHHHHHTCHHHHHHHHTTTTSSCEEECCHHHHHHHHHH
T ss_pred CHHHHHHHHhhcCcccccCccccchhhhhhhhhhhccCChhhhhhhhccChhhhhhccccccCCceeEeCHHHHHHHHHH
Confidence 45543 46778889999999993 367999999999999999
Q ss_pred HHHHh--ccCCCceEEEcCcccHHHHHHHHH-HHHHHhCCCCccccCCCCccchhhhhhhccc---CCCCccCccccCEE
Q psy14128 102 QLAAK--VTCESDVAGVVGSLADAEAMVALK-DLLNKLGSEDLYTEYAFPLEGAGTDLRANYL---LNNKIAGAEEADLI 175 (393)
Q Consensus 102 ~l~~~--~~g~~sv~~l~g~~~t~E~~~~~~-k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~---~~~~~~~ie~AD~I 175 (393)
+|.+. +||+++|+++.|+..++|+.|.++ ||++.+|++|+++...+|..+. +...+++ ....+.|+++||+|
T Consensus 173 ~l~~i~~~~Gp~sI~~~~~~~~~~~~~y~~~~rf~~~lG~~~~~~~~~~c~~~~--~~~~~~G~~~~~~~~~D~~~ad~i 250 (1247)
T 1q16_A 173 SNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPP--ASPQTWGEQTDVPESADWYNSSYI 250 (1247)
T ss_dssp HHHHHHHHTCGGGEEEECCCGGGSHHHHHHHHHHHHHHTCEEECCTTTTTCSCT--HHHHHHSCSCCCCCGGGGGGCSEE
T ss_pred HHHHHHHHhCCceEEEEeCCccchHHHHHHHHHHHHHhCCCccCCCCchhhhhh--hHHHHhCCCCCCCCHHHHhhCCEE
Confidence 99754 589999999999989999999876 9998899999887665665432 2222222 23457889999999
Q ss_pred EEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCCcc
Q psy14128 176 LLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLR 214 (393)
Q Consensus 176 L~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~~~ 214 (393)
|+||+|+..++|....+++++. ++|+|||||||+.+.+
T Consensus 251 v~wGsN~~~t~~~~~~~l~~ar-~~G~KvVvIDPr~t~t 288 (1247)
T 1q16_A 251 IAWGSNVPQTRTPDAHFFTEVR-YKGTKTVAVTPDYAEI 288 (1247)
T ss_dssp EEESCCHHHHSGGGHHHHHHHG-GGTCEEEEECSSCCHH
T ss_pred EEECCCchhccHHHHHHHHHHH-HCCCEEEEEeCCCCcc
Confidence 9999999999999999999886 5799999999976654
No 16
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=97.38 E-value=0.0015 Score=69.17 Aligned_cols=42 Identities=19% Similarity=0.411 Sum_probs=38.3
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 43 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~ 43 (393)
++++|++|++|+|+..++|++..|++++. ++|++|.+|+|..
T Consensus 164 i~~ad~il~~G~n~~~~~p~~~~~l~~a~-~~G~klividPr~ 205 (715)
T 2iv2_X 164 IDNTDLVFVFGYNPADSHPIVANHVINAK-RNGAKIIVCDPRK 205 (715)
T ss_dssp GGGCSEEEEESCCHHHHCHHHHHHHHHHH-HTTCEEEEECSSC
T ss_pred HhcCCEEEEEcCChHHhCHHHHHHHHHHH-HCCCeEEEEcCCC
Confidence 47899999999999999999999999986 4899999999954
No 17
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=97.32 E-value=0.00011 Score=78.60 Aligned_cols=92 Identities=22% Similarity=0.370 Sum_probs=70.8
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhh------------------------cCCcEEEEEcCCCCcccch------h
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYL------------------------TNELDVAYIGPKVDLRYDY------E 50 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~------------------------~~~~~v~~ig~~~d~~~~~------~ 50 (393)
+|++|++|++| |++.++|+++.|+||+.+ ++|.++.+|+|....+-.. .
T Consensus 390 i~~ad~Il~~G-Np~~~~P~~~~rlr~a~~~~~~~~~~~~g~~~~~~~v~~~~~~~g~klividPr~t~ta~~Ad~~l~i 468 (783)
T 3i9v_3 390 LLQADFALVLG-DPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVH 468 (783)
T ss_dssp HHHCSCEEEES-CHHHHSTHHHHHHHHHHTTCCCCCCBTTBSCSSCTTCCTTCCCCTTSEEEEESSCCGGGTTCSEEEEC
T ss_pred HhhCCEEEEeC-ChhHhCcHHHHHHHHHHHhcccchhhcccccchhhhhhhhhhcCCCEEEEEeCCcchhhHhhcceEec
Confidence 46899999999 999999999999999852 4789999999954322221 3
Q ss_pred hhcccHHHHHHHHccC------chHHhhhhhcCCCEEEeCCceeeeChH
Q psy14128 51 HLGESADLIKQLASGS------HPFSKKLSAAKKPLIVVGADMLSRSDG 93 (393)
Q Consensus 51 ~~g~~~~~l~~i~~~~------~~~~~~l~r~~~PlI~~g~~~~~~~~~ 93 (393)
.||.+...+..++..- .++++.+..+++|+|+.|....+++..
T Consensus 469 ~PGtD~all~al~~~li~~e~i~~~A~~la~a~~~~I~~G~g~~~~~~~ 517 (783)
T 3i9v_3 469 RPGEEREILLALLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTVA 517 (783)
T ss_dssp CSSCHHHHHHHHHTSSCCCHHHHHHHHHHHHCSSCEEEECSHHHHCHHH
T ss_pred CCCcHHHHHHHHHHhccCHHHHHHHHHHHHhCCCcEEEECchhhhcHHH
Confidence 4788887777776532 467888888999999999877666444
No 18
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=96.30 E-value=0.0048 Score=65.32 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=40.0
Q ss_pred CCCCcEEEEEccCCCcchh-hhhhhHhhhhhcCCcEEEEEcCCCCcc
Q psy14128 1 AEEADLILLIGTNPRFEAP-LFNARIRKGYLTNELDVAYIGPKVDLR 46 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~p-lln~RiRk~~~~~~~~v~~ig~~~d~~ 46 (393)
++++|++|++|+|+..++| .+..||+++.. +|++|.+|.|....+
T Consensus 158 ~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~-~G~klividPr~t~t 203 (727)
T 2e7z_A 158 FADSNCLLFIGKNLSNHNWVSQFNDLKAALK-RGCKLIVLDPRRTKV 203 (727)
T ss_dssp TTTCSEEEEESCCCBTTBSHHHHHHHHHHHH-HTCEEEEECSSCCHH
T ss_pred cccCCEEEEECCChhhcCCHHHHHHHHHHHH-CCCeEEEECCCCCcc
Confidence 5899999999999999999 99999999875 789999999965443
No 19
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=96.24 E-value=0.0076 Score=63.75 Aligned_cols=43 Identities=19% Similarity=0.361 Sum_probs=38.6
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcC-CcEEEEEcCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTN-ELDVAYIGPKV 43 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~-~~~v~~ig~~~ 43 (393)
++++|++|++|+|+..++|.+..|++++..++ |++|.+|+|..
T Consensus 164 ~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~ 207 (723)
T 2nap_A 164 IDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRR 207 (723)
T ss_dssp GGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBC
T ss_pred HhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcC
Confidence 47899999999999999999999999988643 99999999954
No 20
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=95.80 E-value=0.017 Score=61.53 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=39.7
Q ss_pred CCCCcEEEEEccCCCcchh-hhhhhHhhhhhcCCcEEEEEcCCCCcc
Q psy14128 1 AEEADLILLIGTNPRFEAP-LFNARIRKGYLTNELDVAYIGPKVDLR 46 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~p-lln~RiRk~~~~~~~~v~~ig~~~d~~ 46 (393)
++++|++|++|+|+..++| .+..|++++.. +|++|.+|+|....+
T Consensus 197 ~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~-~G~klividPr~t~t 242 (765)
T 2vpz_A 197 WENARYIVLIGHHIGEDTHNTQLQDFALALK-NGAKVVVVDPRFSTA 242 (765)
T ss_dssp GGGCSEEEEESCCBTTBCCHHHHHHHHHHHH-TTCEEEEECSBCCTT
T ss_pred cccCCEEEEEeCChhhcCChHHHHHHHHHHH-CCCEEEEECCCCCcc
Confidence 4789999999999999999 99999999875 799999999954433
No 21
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=92.33 E-value=0.095 Score=56.06 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=38.2
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhh-cCCcEEEEEcCCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYL-TNELDVAYIGPKVD 44 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~-~~~~~v~~ig~~~d 44 (393)
++++|++|++|+|+...+|++..|++++.. ++|++|.+|.|...
T Consensus 176 ~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t 220 (802)
T 3ml1_A 176 FEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTH 220 (802)
T ss_dssp GGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBC
T ss_pred HhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 478999999999999999999999998754 37999999999443
No 22
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=92.12 E-value=0.071 Score=58.57 Aligned_cols=43 Identities=14% Similarity=0.269 Sum_probs=38.7
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 43 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~ 43 (393)
++++|++|++|+|+...+|+...|++++..++|++|.+|.|..
T Consensus 220 ~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~ 262 (1015)
T 1kqf_A 220 IKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRF 262 (1015)
T ss_dssp GGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSC
T ss_pred HhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4789999999999999999999999998735899999999954
No 23
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=90.41 E-value=0.22 Score=54.46 Aligned_cols=42 Identities=19% Similarity=0.413 Sum_probs=38.2
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 43 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~ 43 (393)
++++|++|++|+|+...+|....|++++. ++|++|.+|.|..
T Consensus 182 ~~~ad~il~~G~N~~~~~p~~~~~~~~a~-~~G~klivIDPr~ 223 (977)
T 1h0h_A 182 LKNSDVILMMGSNPAENHPISFKWVMRAK-DKGATLIHVDPRY 223 (977)
T ss_dssp GGGCSEEEEESCCHHHHSTTHHHHHHHHH-HTTCEEEEECSSC
T ss_pred HhhCCEEEEECCChHHhCcHHHHHHHHHH-HCCCeEEEECCCC
Confidence 47899999999999999999999999987 4799999999954
No 24
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=88.37 E-value=0.3 Score=53.33 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=39.2
Q ss_pred CCCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCCCCcc
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLR 46 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~~d~~ 46 (393)
++++|++|++|+|+...+|...+|++++-. +|++|.+|.|.+.-+
T Consensus 244 ~~nad~Il~~G~N~~~~~p~~~~~~~~ar~-~GakvivVDPr~t~t 288 (976)
T 2ivf_A 244 LLDAELIFMTCSNWSYTYPSSYHFLSEARY-KGAEVVVIAPDFNPT 288 (976)
T ss_dssp GGGCSEEEEESCCHHHHCTTTHHHHHHHHH-HTCEEEEECSSCCTT
T ss_pred HhhCcEEEEeCCChhHcccHHHHHHHHHHH-cCCEEEEECCCCCcc
Confidence 478999999999999999999999999875 799999999954433
No 25
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=86.68 E-value=0.22 Score=53.74 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=34.2
Q ss_pred CCCcEEEEEccCCCcchhhhh-----hhHhhhhhcCCcEEEEEcCCC
Q psy14128 2 EEADLILLIGTNPRFEAPLFN-----ARIRKGYLTNELDVAYIGPKV 43 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln-----~RiRk~~~~~~~~v~~ig~~~ 43 (393)
+++|++|++|+|+ .++|+.. +++|+..+++|++|.+|.|..
T Consensus 207 ~~ad~il~~G~Np-~~~p~~~~~~~~~~~~~~a~~~G~klivIDPr~ 252 (875)
T 1ti6_A 207 KHAEMIVFWSSDP-ETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHM 252 (875)
T ss_dssp HHCSEEEEESCCH-HHHCSSSCTTTTHHHHHHHHHTTCEEEEECSBC
T ss_pred hcCCEEEEECCCh-hhCCccCCCccchHHHHHHHHcCCeEEEECCCC
Confidence 5799999999999 9999854 677775556899999999943
No 26
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=84.43 E-value=0.26 Score=52.46 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=35.0
Q ss_pred CCCcEEEEEccCCCcchhh--------hhhhHhhhhhcCCcEEEEEcCCC
Q psy14128 2 EEADLILLIGTNPRFEAPL--------FNARIRKGYLTNELDVAYIGPKV 43 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~pl--------ln~RiRk~~~~~~~~v~~ig~~~ 43 (393)
+++|++|++|+|+..++|+ ...||+++.. +|++|.+|.|..
T Consensus 176 ~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~-~G~klivIDPr~ 224 (780)
T 1eu1_A 176 ENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKE-KGTRVIAINPVR 224 (780)
T ss_dssp HHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHH-HTCEEEEESSBC
T ss_pred hhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHH-CCCeEEEECCCC
Confidence 6799999999999999987 4478998765 689999999943
No 27
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=83.16 E-value=0.29 Score=52.37 Aligned_cols=42 Identities=24% Similarity=0.194 Sum_probs=34.8
Q ss_pred CCCcEEEEEccCCCcchhh--------hhhhHhhhhh--cCCc-EEEEEcCCC
Q psy14128 2 EEADLILLIGTNPRFEAPL--------FNARIRKGYL--TNEL-DVAYIGPKV 43 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~pl--------ln~RiRk~~~--~~~~-~v~~ig~~~ 43 (393)
|++|++|++|+|+..++|+ +.++++++.. ++|+ +|.+|.|..
T Consensus 209 ~~ad~il~~G~Np~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~klivIDPr~ 261 (829)
T 1tmo_A 209 EHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVV 261 (829)
T ss_dssp HHCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSC
T ss_pred hhCCEEEEECCChhhccccccccccchHHHHHHHHHHHhhCCCceEEEECCCC
Confidence 6899999999999999987 6678888753 1588 999999954
No 28
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=79.83 E-value=0.88 Score=50.79 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=46.2
Q ss_pred HHHHHHHHHhC-----CCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCcccCCCccc
Q psy14128 234 SHAFSKKLAAA-----KKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESAD 287 (393)
Q Consensus 234 ~~~~a~~l~~a-----~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~~~~~~~~n 287 (393)
+.++|+.++++ ++++|++|+|+.++.++.....++.+|+.+|| .++..+++.+
T Consensus 519 I~~lAr~~A~~a~~~~~~~~i~~g~G~~~~~~g~~~~rai~~L~~LtG-~iG~~GGG~~ 576 (1247)
T 1q16_A 519 IIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCG-CVGQSGGGWA 576 (1247)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEECHHHHTSTTHHHHHHHHHHHHHHTT-CTTSTTCEEE
T ss_pred HHHHHHHHHhhccccCCCeEEEcCccccccccHHHHHHHHHHHHHHhC-CCCCCCCccc
Confidence 56688888875 89999999999999999999999999999999 6877776543
No 29
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=79.30 E-value=3.4 Score=34.95 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 236 AFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 236 ~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
++++.|.+|++|+|++|.++.. ......+..|++.+|+-+
T Consensus 26 ~aa~~L~~AkrPvil~G~g~~~----~~a~~~l~~lae~~~iPV 65 (170)
T 3cf4_G 26 MAAKIISKAKRPLLMVGTLALD----PELLDRVVKISKAANIPI 65 (170)
T ss_dssp HHHHHHHHCSSEEEEECSTTCC----HHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHcCCCCEEEECCCccc----hhHHHHHHHHHHHhCCCE
Confidence 4788899999999999998865 235567788888888544
No 30
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Probab=79.19 E-value=0.72 Score=49.32 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=33.4
Q ss_pred CCCCcEEEEEccCCCcchhhhhh-----hHhhh----hh-------cCCcEEEEEcCCCCcc
Q psy14128 1 AEEADLILLIGTNPRFEAPLFNA-----RIRKG----YL-------TNELDVAYIGPKVDLR 46 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~plln~-----RiRk~----~~-------~~~~~v~~ig~~~d~~ 46 (393)
+|++|++|++|+|+..++|++.. ++|++ .+ ++|++|.+|+|....+
T Consensus 222 ~~~ad~il~~G~Np~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~klivIDPr~t~t 283 (825)
T 1g8k_A 222 AQLADVIWSIGNNPYESQTNYFLNHWLPNLQGATTSKKKERFPNENFPQARIIFVDPRETPS 283 (825)
T ss_dssp HHHCSEEEEESCCHHHHSHHHHHHTHHHHHHTTTHHHHHHHCTTCCCCCCEEEEECSSCCHH
T ss_pred HHhCCEEEEeCCChHHhCcchHhhhHHHhhhhhHHHHhhhhccccccCCCEEEEEeCCCCch
Confidence 36899999999999999998653 12221 11 2589999999965443
No 31
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=56.55 E-value=8.1 Score=34.51 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=35.5
Q ss_pred CCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCC---CCcccchhhhcccHHHHHHHH
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK---VDLRYDYEHLGESADLIKQLA 63 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~---~d~~~~~~~~g~~~~~l~~i~ 63 (393)
+++|++|+|||-+... |. +++=+.+...|.++..||.. .|-..++...+.-..+|.+++
T Consensus 166 ~~adl~lviGTSl~V~-Pa--~~l~~~a~~~g~~~i~iN~~~t~~~~~~~~~i~~~~~~~l~~l~ 227 (235)
T 1s5p_A 166 SMADIFIAIGTSGHVY-PA--AGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFV 227 (235)
T ss_dssp HHCSEEEEESCCTTEE-TG--GGHHHHHHHTTCEEEEEESSSCC---CCSEEEESCHHHHHHHHH
T ss_pred hcCCEEEEECcCCchh-hH--HHHHHHHHHcCCeEEEEECCCCCCCccccEEEeCCHHHHHHHHH
Confidence 5789999999998883 43 45433343468999999972 333333333344444455443
No 32
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=54.41 E-value=9.8 Score=33.95 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=29.0
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
+.++.+|++|++|+.... .|... -.+.+. ++|+++++|++.
T Consensus 163 ~~~~~adl~lviGTSl~V-~Pa~~-l~~~a~-~~g~~~i~iN~~ 203 (235)
T 1s5p_A 163 MALSMADIFIAIGTSGHV-YPAAG-FVHEAK-LHGAHTVELNLE 203 (235)
T ss_dssp HHHHHCSEEEEESCCTTE-ETGGG-HHHHHH-HTTCEEEEEESS
T ss_pred HHHhcCCEEEEECcCCch-hhHHH-HHHHHH-HcCCeEEEEECC
Confidence 346789999999997655 45422 234443 479999999984
No 33
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=53.38 E-value=13 Score=31.61 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=27.6
Q ss_pred HHH-HHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCC
Q psy14128 235 HAF-SKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 277 (393)
Q Consensus 235 ~~~-a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~ 277 (393)
.++ ++.|.+||+|+|++|. +.. ......+..|++. +.
T Consensus 25 ~~a~a~lI~~AkRPvIl~Gg-v~~----~~A~~eL~~~ae~-~i 62 (174)
T 1ytl_A 25 GKPVANMIKKAKRPLLIVGP-DMT----DEMFERVKKFVEK-DI 62 (174)
T ss_dssp HHHHHHHHHHCSSEEEEECS-CCC----HHHHHHHHHHHTS-SS
T ss_pred HHHHHHHHHcCCCCEEEECC-CCC----ccHHHHHHHHHHc-CC
Confidence 447 8899999999999999 754 2344566777777 63
No 34
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=53.29 E-value=7.9 Score=32.58 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=24.8
Q ss_pred cCccccCEEEEecCCc--CccccHHHHHHHHhhhcCCceEEEEcCCC
Q psy14128 167 AGAEEADLILLIGTNP--RFEAPLFNARIRKGYLTNELDVAYIGPKV 211 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~--~~~~p~l~~rlr~a~~~~gakiivi~p~~ 211 (393)
.-+++||+||.+|+.. .+..+-- . ... .. +++|.++...
T Consensus 103 ~~~~~aDlvl~iG~~~~~~~~~t~~---~-~~~-~~-~~iI~i~~~~ 143 (170)
T 3cf4_G 103 DGNGNYDMIITIGFKKFYINQVLSA---A-KNF-SN-LKTIAIERGY 143 (170)
T ss_dssp SSSCCCSEEEEESCCHHHHHHHHHH---H-HHH-CC-CCEEECSSSC
T ss_pred HHhhcCCEEEEECCccCcccccccc---c-ccc-CC-CeEEEECCCc
Confidence 4578999999999976 4333321 1 112 23 7899888743
No 35
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=52.69 E-value=27 Score=35.25 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 236 AFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 236 ~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
++++.|.++++|+|++|.+..... ....+..|++.+|.-+
T Consensus 199 ~~~~~l~~a~rpvil~G~g~~~~~----a~~~l~~lae~~~~Pv 238 (566)
T 1ozh_A 199 QVAKLIAQAKNPIFLLGLMASQPE----NSKALRRLLETSHIPV 238 (566)
T ss_dssp HHHHHHHHCSSEEEEECGGGGSGG----GHHHHHHHHHHHCCCE
T ss_pred HHHHHHHcCCCeEEEECCCccccc----HHHHHHHHHHHHCCCE
Confidence 478889999999999999886432 2456777888877433
No 36
>4aay_A AROA; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=52.65 E-value=4.5 Score=43.36 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=30.5
Q ss_pred CCCCcEEEEEccCCCcchhhh--hh-------h-Hhhhh------hcCCcEEEEEcCCC
Q psy14128 1 AEEADLILLIGTNPRFEAPLF--NA-------R-IRKGY------LTNELDVAYIGPKV 43 (393)
Q Consensus 1 ~e~~d~~llvG~n~r~e~pll--n~-------R-iRk~~------~~~~~~v~~ig~~~ 43 (393)
+|++|++|++|+|+-..+|.+ +| | +.++- .++|++|.+|.|..
T Consensus 226 ~~~ad~il~~G~Np~~~~p~~~~~h~~~~~~~~~~~~~k~~~~~~~~~GaklIvIDPr~ 284 (845)
T 4aay_A 226 AELADTIVAVGTNALETQTNYFLNHWIPNLRGESLGKKKELMPEEPHEAGRIIIVDPRR 284 (845)
T ss_dssp HHHCSEEEEESCCHHHHSHHHHHHTHHHHHHTTTHHHHHHHSCSSCCCCCEEEEECSSC
T ss_pred HhhCCEEEEEeCChhHhCcchHHHHHHHHHHHHHHHHHhhhccccccCCCEEEEEeCCC
Confidence 367999999999999999864 22 2 11211 12599999999943
No 37
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=52.08 E-value=13 Score=33.39 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=27.2
Q ss_pred CCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 41 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~ 41 (393)
+++|++|+|||-+... | .+++.......|.++..||.
T Consensus 176 ~~adlllviGTSl~V~-P--~~~l~~~a~~~g~~~i~IN~ 212 (249)
T 1m2k_A 176 ERADVIIVAGTSAVVQ-P--AASLPLIVKQRGGAIIEINP 212 (249)
T ss_dssp HHCSEEEEESCCSCST-T--GGGHHHHHHHTTCEEEEECS
T ss_pred hcCCEEEEEccCCCcc-c--hHHHHHHHHHcCCeEEEEeC
Confidence 4689999999987764 4 34544434347999999998
No 38
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=51.95 E-value=11 Score=34.80 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=29.6
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
+.++.+|++|++|+.... .|.. .-.+.+. ++|+++++|++.
T Consensus 212 ~~~~~aDllLviGTSl~V-~Paa-~l~~~a~-~~g~~~v~IN~~ 252 (290)
T 3u31_A 212 EEIAKCDLLLVIGTSSTV-STAT-NLCHFAC-KKKKKIVEINIS 252 (290)
T ss_dssp HHHHHCSEEEEESCCSCS-HHHH-HHHHHHH-HTTCCEEEEESS
T ss_pred HHHhcCCEEEEECcCCcc-hhHH-HHHHHHH-HcCCEEEEECCC
Confidence 447889999999997765 3443 3345554 479999999984
No 39
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=50.38 E-value=25 Score=35.83 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 236 AFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 236 ~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
++++.|.++++|+|++|.++. + ....+..|++.+|.-+
T Consensus 204 ~~~~~l~~A~rPvIl~G~g~~---~---a~~~l~~lae~~~~PV 241 (603)
T 4feg_A 204 RLTQTLLAAERPLIYYGIGAR---K---AGKELEQLSKTLKIPL 241 (603)
T ss_dssp HHHHHHHHCSSEEEEECGGGT---T---CHHHHHHHHHHHTCCE
T ss_pred HHHHHHhcCCCeEEEECCCch---h---HHHHHHHHHHHHCCCE
Confidence 478889999999999999882 2 2356777888877433
No 40
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=48.40 E-value=12 Score=34.15 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=29.4
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
+.++.+|++|++|+.... .|.... .+.+. ++|+++++|++.
T Consensus 208 ~~~~~aDl~lviGTSl~V-~Paa~l-~~~a~-~~g~~~v~IN~~ 248 (273)
T 3riy_A 208 RELAHCDLCLVVGTSSVV-YPAAMF-APQVA-ARGVPVAEFNTE 248 (273)
T ss_dssp HHHHHCSEEEEESCCSCE-ETGGGH-HHHHH-HTTCCEEEEESS
T ss_pred HHHhcCCEEEEEeeCCcc-hhHHHh-HHHHH-HCCCEEEEECCC
Confidence 346889999999997755 454332 34444 479999999984
No 41
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=48.10 E-value=38 Score=34.29 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.++++|+|++|.+..... ..+..|++.+|+-+
T Consensus 205 ~~~~~~l~~a~rpvIl~G~g~~~~~------~~l~~lae~~~~Pv 243 (590)
T 1ybh_A 205 EQIVRLISESKKPVLYVGGGCLNSS------DELGRFVELTGIPV 243 (590)
T ss_dssp HHHHHHHHHCSSEEEEECGGGTTCH------HHHHHHHHHHCCCE
T ss_pred HHHHHHHHhCCCcEEEECcccccCH------HHHHHHHHHhCCCE
Confidence 4578899999999999999886432 66778888887444
No 42
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=47.78 E-value=12 Score=33.51 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=26.8
Q ss_pred CCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 41 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~ 41 (393)
+++|++|+|||-+... | .+++-+.....|.++..||.
T Consensus 179 ~~adl~lviGTSl~V~-P--~~~l~~~a~~~g~~~i~IN~ 215 (246)
T 1yc5_A 179 SRASLMIVLGSSLVVY-P--AAELPLITVRSGGKLVIVNL 215 (246)
T ss_dssp HHCSEEEEESCCSCEE-T--GGGHHHHHHHHTCEEEEECS
T ss_pred hcCCEEEEECCCCcch-h--HHHHHHHHHHcCCeEEEEeC
Confidence 4689999999987774 4 34444433345889999998
No 43
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=47.76 E-value=1.3e+02 Score=25.82 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHH-hccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCCCccCccc
Q psy14128 93 GAAVLALVQQLAA-KVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEE 171 (393)
Q Consensus 93 ~~al~~~a~~l~~-~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~ 171 (393)
.+.+..+++.|.+ ....++.|-+++.+....-..+...+|.+ +|.+-..... ..+ .......+..
T Consensus 41 ~~~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~~-lg~~~~~~~~--------~~~-----~~~~~~~~~~ 106 (220)
T 3etn_A 41 TDAYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCS-TGIPSVFLHP--------SEA-----QHGDLGILQE 106 (220)
T ss_dssp CTHHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHHH-TTCCEEECCT--------TGG-----GBTGGGGCCT
T ss_pred HHHHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHHh-cCCcEEEeCC--------HHH-----HHhhhccCCC
Confidence 3567888888865 33345778777666554444444445543 5532111100 000 1112344566
Q ss_pred cCEEEEecCCcCccccHHHHHHHHhhhc--CCceEEEEcC
Q psy14128 172 ADLILLIGTNPRFEAPLFNARIRKGYLT--NELDVAYIGP 209 (393)
Q Consensus 172 AD~IL~iG~n~~~~~p~l~~rlr~a~~~--~gakiivi~p 209 (393)
-|+++++...-++ ..++ .-++.+. + +|++++.|-.
T Consensus 107 ~DlvI~iS~SG~t-~~~i-~~~~~ak-~~~~Ga~vI~IT~ 143 (220)
T 3etn_A 107 NDLLLLISNSGKT-REIV-ELTQLAH-NLNPGLKFIVITG 143 (220)
T ss_dssp TCEEEEECSSSCC-HHHH-HHHHHHH-HHCTTCEEEEEES
T ss_pred CCEEEEEcCCCCC-HHHH-HHHHHHH-hcCCCCeEEEEEC
Confidence 7888888654443 2222 3345543 5 7999998875
No 44
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=46.97 E-value=20 Score=33.59 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=36.0
Q ss_pred CCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC---CCCcccchhhhcccHHHHHHHH
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP---KVDLRYDYEHLGESADLIKQLA 63 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~---~~d~~~~~~~~g~~~~~l~~i~ 63 (393)
+++|++|+|||-+...-- +++-.....+|.++..||. ..|-..++...+.--.++..++
T Consensus 205 ~~aDllLViGTSL~V~Pa---a~l~~~a~~~G~~vviIN~~~t~~d~~adl~i~g~~~evl~~L~ 266 (318)
T 3k35_A 205 RNADLSITLGTSLQIRPS---GNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLM 266 (318)
T ss_dssp HTCSEEEEESCCCCSTTG---GGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHH
T ss_pred hcCCEEEEEccCCCchhh---hhhHHHHHhcCCEEEEECCCCCCCCCcccEEEeCCHHHHHHHHH
Confidence 579999999999988732 4443223347899999997 2333333333343334444443
No 45
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=46.24 E-value=35 Score=34.17 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=54.8
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCC---CCccchhhhhhhcccCCCC-
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYA---FPLEGAGTDLRANYLLNNK- 165 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~---~~~~~~~~~~~~~~~~~~~- 165 (393)
.+..+++..+++.|.+ +++-.+++|+... +....+.+|+..+|.+-+....+ ++..+ .. +...++....
T Consensus 185 ~~~~~~i~~~~~~l~~----A~rpvIl~G~g~~-~a~~~l~~lae~~~~Pv~~t~~gkg~~~~~h-p~-~~G~~G~~~~~ 257 (549)
T 3eya_A 185 TPEEEELRKLAQLLRY----SSNIALMCGSGCA-GAHKELVEFAGKIKAPIVHALRGKEHVEYDN-PY-DVGMTGLIGFS 257 (549)
T ss_dssp ECCHHHHHHHHHHHHT----CCSEEEEECGGGT-TCHHHHHHHHHHHTCCEEECGGGHHHHSSSC-TT-BCCCCSTTSCH
T ss_pred CCCHHHHHHHHHHHHh----CCCcEEEECCCch-HHHHHHHHHHHHhCCCEEECCccCcCCCCCC-cc-cccCCCCCCCH
Confidence 3567788888877754 3444455554332 22345678999898664432110 00000 00 0000111111
Q ss_pred --ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 166 --IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 166 --~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
...++++|+||.+|+..... . ....+++++.||.
T Consensus 258 ~~~~~~~~aDlvl~iG~~~~~~---------~-~~~~~~~~i~id~ 293 (549)
T 3eya_A 258 SGFHTMMNADTLVLLGTQFPYR---------A-FYPTDAKIIQIDI 293 (549)
T ss_dssp HHHHHHHHCSEEEEESCCCCCG---------G-GSCSSSEEEEEES
T ss_pred HHHHHHHhCCEEEEECCCCCcc---------c-cCCCCCeEEEEeC
Confidence 12368899999999976421 1 1235789999986
No 46
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=46.12 E-value=12 Score=33.71 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=26.9
Q ss_pred CCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 41 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~ 41 (393)
+++|++|+|||-+... | .+++-+.+...|.++..||.
T Consensus 182 ~~adl~lviGTSl~V~-P--~~~l~~~a~~~g~~~i~iN~ 218 (253)
T 1ma3_A 182 KHCDAFMVVGSSLVVY-P--AAELPYIAKKAGAKMIIVNA 218 (253)
T ss_dssp HHCSEEEEESCCSCEE-T--GGGHHHHHHHHTCEEEEEES
T ss_pred HhCCEEEEECCCceec-c--HHHHHHHHHHcCCeEEEEeC
Confidence 4689999999987774 4 34554434346889999997
No 47
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=45.78 E-value=57 Score=33.07 Aligned_cols=107 Identities=21% Similarity=0.105 Sum_probs=55.7
Q ss_pred eChHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCC---CCccchhhhhhhcccCCCC-
Q psy14128 90 RSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYA---FPLEGAGTDLRANYLLNNK- 165 (393)
Q Consensus 90 ~~~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~---~~~~~~~~~~~~~~~~~~~- 165 (393)
.+..+++..+++.|.+. ++-.+++|+.. .+....+.+|+..+|.+-+..-.. ++.. ..-+...++...+
T Consensus 196 ~~~~~~i~~~~~~l~~A----~rPvIl~G~g~-~~a~~~l~~lae~~~~PV~~t~~gkg~~~~~--hp~~~G~~g~~~~~ 268 (603)
T 4feg_A 196 EPDVQAVTRLTQTLLAA----ERPLIYYGIGA-RKAGKELEQLSKTLKIPLMSTYPAKGIVADR--YPAYLGSANRVAQK 268 (603)
T ss_dssp BCCHHHHHHHHHHHHHC----SSEEEEECGGG-TTCHHHHHHHHHHHTCCEEECGGGTTSSCTT--CTTBCCCCSSSSCH
T ss_pred CCCHHHHHHHHHHHhcC----CCeEEEECCCc-hhHHHHHHHHHHHHCCCEEEcCccccCCCCC--ChhhcccCcccCcH
Confidence 35667788888777542 33444555433 222345678888888664432111 1100 0000011111111
Q ss_pred --ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 166 --IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 166 --~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
...++++|+||.+|+.+... .+ ++ . ...++++|.||+.
T Consensus 269 ~~~~~l~~aDlvl~iG~~~~~~-~~----~~-~-~~~~~~~i~id~d 308 (603)
T 4feg_A 269 PANEALAQADVVLFVGNNYPFA-EV----SK-A-FKNTRYFLQIDID 308 (603)
T ss_dssp HHHHHHHHCSEEEEESCCCTTT-TT----TT-T-TTTCSEEEEEESC
T ss_pred HHHHHHHhCCEEEEECCCCCcc-cc----cc-c-CCCCCeEEEEeCC
Confidence 22368899999999987521 11 11 1 2347899999873
No 48
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=44.93 E-value=28 Score=35.45 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.++++|+|++|.++.... ....+..|++.+|+-+
T Consensus 217 ~~~~~~l~~a~rpvil~G~g~~~~~----a~~~l~~lae~~~~PV 257 (616)
T 2pan_A 217 EKAVEMLIQAERPVIVAGGGVINAD----AAALLQQFAELTSVPV 257 (616)
T ss_dssp HHHHHHHHTCSSEEEEECHHHHHTT----CHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHcCCCeEEEECCCcCccc----HHHHHHHHHHHhCCCE
Confidence 3478889999999999998875432 2355677777777443
No 49
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=44.84 E-value=30 Score=27.00 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=35.4
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 211 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~ 211 (393)
..+..+||++++..--+...+-++.++..|. +.|-+|+.|.++.
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~-~~gkpIigV~~~g 77 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLAR-KSSKPIITVRPYG 77 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHT-TTTCCEEEECCSS
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHH-HcCCCEEEEEcCC
Confidence 6788999987665545556789999999997 5899999999853
No 50
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=44.49 E-value=44 Score=33.77 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhh-hhcccCCCC---cc
Q psy14128 92 DGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDL-RANYLLNNK---IA 167 (393)
Q Consensus 92 ~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~-~~~~~~~~~---~~ 167 (393)
..+++..+++.|.+. ++-.+++|+...... ..+.+|+..+|.+-+..-.+....+....+ ....+.... ..
T Consensus 200 ~~~~i~~~~~~l~~a----~rpvIl~G~g~~~~~-~~l~~lae~~~~Pv~~t~~g~g~~~~~hp~~~G~~g~~~~~~~~~ 274 (590)
T 1ybh_A 200 EDSHLEQIVRLISES----KKPVLYVGGGCLNSS-DELGRFVELTGIPVASTLMGLGSYPADDELSLHMLGMHGTVYANY 274 (590)
T ss_dssp CHHHHHHHHHHHHHC----SSEEEEECGGGTTCH-HHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHH
T ss_pred CHHHHHHHHHHHHhC----CCcEEEECcccccCH-HHHHHHHHHhCCCEEEchhhcCcCCCCCchhcCCcccccCHHHHH
Confidence 556677777777542 344455554443333 566788888886644321110000000000 011111111 22
Q ss_pred CccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 168 GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 168 ~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
.++++|+||.+|+.+.. +.. .... . ...+++++.||..
T Consensus 275 ~l~~aDlvl~iG~~~~~--~~~-~~~~-~-~~~~~~~i~id~d 312 (590)
T 1ybh_A 275 AVEHSDLLLAFGVRFDD--RVT-GKLE-A-FASRAKIVHIDID 312 (590)
T ss_dssp HHHHCSEEEEESCCCCH--HHH-SSGG-G-TTTTSEEEEEESC
T ss_pred HHHhCCEEEEEcCCCCc--ccc-Cccc-c-cCCCCeEEEEECC
Confidence 36889999999987632 111 1111 1 2346799999873
No 51
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=43.12 E-value=50 Score=34.18 Aligned_cols=43 Identities=28% Similarity=0.477 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 234 SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 234 ~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
..++++.|.++++|+|++|.++....++ ...+..|++.+|+-+
T Consensus 279 i~~a~~~L~~AkrPvIl~G~g~~~~~~~---~~~l~~lae~~~~PV 321 (677)
T 1t9b_A 279 INKAADLINLAKKPVLYVGAGILNHADG---PRLLKELSDRAQIPV 321 (677)
T ss_dssp HHHHHHHHHTCSSEEEEECGGGGGSTTH---HHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhCCCeEEEECcccccCchh---HHHHHHHHHHhCCCe
Confidence 4558889999999999999988654433 356777888887443
No 52
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=41.22 E-value=22 Score=31.85 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=27.9
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
+.++++|++|++|+... -.|.... .+.+. ++|++++.|++.
T Consensus 173 ~~~~~adlllviGTSl~-V~P~~~l-~~~a~-~~g~~~i~IN~~ 213 (249)
T 1m2k_A 173 REVERADVIIVAGTSAV-VQPAASL-PLIVK-QRGGAIIEINPD 213 (249)
T ss_dssp HHHHHCSEEEEESCCSC-STTGGGH-HHHHH-HTTCEEEEECSS
T ss_pred HHHhcCCEEEEEccCCC-ccchHHH-HHHHH-HcCCeEEEEeCC
Confidence 34678999999998543 3454332 23343 479999999984
No 53
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=41.19 E-value=35 Score=34.53 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.++++|+|++|.+..... ....+..|++.+|.-+
T Consensus 196 ~~~~~~l~~a~rpvIl~G~g~~~~~----a~~~l~~lae~~~~Pv 236 (589)
T 2pgn_A 196 REAAAQLVAAKNPVILAGGGVARSG----GSEALLKLAEMVGVPV 236 (589)
T ss_dssp HHHHHHHHHCSSEEEEECHHHHHHT----CHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHhCCCeEEEECCCccccc----HHHHHHHHHHHhCCCE
Confidence 3478899999999999998875422 2356677788877433
No 54
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=41.08 E-value=21 Score=33.95 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=36.0
Q ss_pred CCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC---CCCcccchhhhcccHHHHHHHH
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP---KVDLRYDYEHLGESADLIKQLA 63 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~---~~d~~~~~~~~g~~~~~l~~i~ 63 (393)
+++|++|+|||-+...-- +++=..+...|.+|..||. ..|-..++...|.--.++..++
T Consensus 205 ~~aDllLViGTSL~V~Pa---a~Lp~~a~~~G~~vviIN~~pT~~d~~adl~i~g~a~evl~~L~ 266 (355)
T 3pki_A 205 RNADLSITLGTSLQIRPS---GNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLM 266 (355)
T ss_dssp HHCSEEEEESCCCCSTTG---GGTTHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHH
T ss_pred hcCCEEEEEeeCCCchhh---hhhHHHHHhcCCEEEEECCCCCCCCCccCEEEeCCHHHHHHHHH
Confidence 579999999999988722 3432222246889999997 2343344433444444455543
No 55
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=38.56 E-value=30 Score=32.31 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=28.4
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
+.++.||++|++|+..... |...+ .+.+. ++|++|++|++.
T Consensus 202 ~~~~~aDllLViGTSL~V~-Paa~l-~~~a~-~~G~~vviIN~~ 242 (318)
T 3k35_A 202 EASRNADLSITLGTSLQIR-PSGNL-PLATK-RRGGRLVIVNLQ 242 (318)
T ss_dssp HHHHTCSEEEEESCCCCST-TGGGH-HHHHH-HTTCEEEEECSS
T ss_pred HHHhcCCEEEEEccCCCch-hhhhh-HHHHH-hcCCEEEEECCC
Confidence 3467899999999976543 43322 23343 479999999984
No 56
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=38.38 E-value=21 Score=32.54 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=35.4
Q ss_pred CCCcEEEEEccCCCcchhhhhhhH-hhhhhcCCcEEEEEcC---CCCcccchhhhcccHHHHHHH
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARI-RKGYLTNELDVAYIGP---KVDLRYDYEHLGESADLIKQL 62 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~Ri-Rk~~~~~~~~v~~ig~---~~d~~~~~~~~g~~~~~l~~i 62 (393)
+++|++|+|||-+... |. +++ +.+. ..|.++..||. ..|-..++...|.-..+|.++
T Consensus 211 ~~aDl~lviGTSl~V~-Pa--a~l~~~a~-~~g~~~v~IN~~~t~~d~~~~~~i~g~~~~~l~~l 271 (273)
T 3riy_A 211 AHCDLCLVVGTSSVVY-PA--AMFAPQVA-ARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEA 271 (273)
T ss_dssp HHCSEEEEESCCSCEE-TG--GGHHHHHH-HTTCCEEEEESSCCTTGGGSSEEEESCHHHHHHHH
T ss_pred hcCCEEEEEeeCCcch-hH--HHhHHHHH-HCCCEEEEECCCCCCCCcceeEEEeCCHHHHHHHH
Confidence 5789999999999884 42 444 4444 47899999996 233333333334444444443
No 57
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=37.94 E-value=35 Score=29.26 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=31.0
Q ss_pred ccccCE-EEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCC
Q psy14128 169 AEEADL-ILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 211 (393)
Q Consensus 169 ie~AD~-IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~ 211 (393)
+..++. |+++|.++..+ ..+.+++..|.-+.|.+||+|.|..
T Consensus 77 I~~Sk~vIllIs~~T~~s-~~v~wEIe~Ai~~~~~PII~Vy~~~ 119 (189)
T 3hyn_A 77 LDNSKNIILFLSSITANS-RALREEMNYGIGTKGLPVIVIYPDY 119 (189)
T ss_dssp HHTEEEEEEECCTTCCCC-HHHHHHHHHHTTTTCCCEEEEETTC
T ss_pred HHhcCcEEEEEecCcccc-chhHHHHHHHHHhcCCcEEEEECCc
Confidence 566665 55566655555 5888899999844799999999953
No 58
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=37.91 E-value=48 Score=33.18 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 236 AFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 236 ~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
++++.|.++++|+|+.|.+.. + ....+..|++.+|.-+
T Consensus 193 ~~~~~l~~A~rpvIl~G~g~~---~---a~~~l~~lae~~~~Pv 230 (549)
T 3eya_A 193 KLAQLLRYSSNIALMCGSGCA---G---AHKELVEFAGKIKAPI 230 (549)
T ss_dssp HHHHHHHTCCSEEEEECGGGT---T---CHHHHHHHHHHHTCCE
T ss_pred HHHHHHHhCCCcEEEECCCch---H---HHHHHHHHHHHhCCCE
Confidence 478889999999999998873 1 2356777888887544
No 59
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=37.79 E-value=31 Score=34.79 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.++++|+|++|.+..... ....+..|++.+|.-+
T Consensus 207 ~~~~~~l~~a~rpvIl~G~g~~~~~----a~~~l~~lae~~~~Pv 247 (573)
T 2iht_A 207 DQAAALLAEAKHPVLVVGAAAIRSG----AVPAIRALAERLNIPV 247 (573)
T ss_dssp HHHHHHHHHCSSEEEEECHHHHHTT----CHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHcCCCeEEEECCCccccC----HHHHHHHHHHHHCCeE
Confidence 3478889999999999998876422 2356677777777433
No 60
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=37.16 E-value=23 Score=31.80 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=27.8
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
+.++.+|++|++|+... -.|.... .+.+. ++|+++++|++.
T Consensus 179 ~~~~~adl~lviGTSl~-V~P~~~l-~~~a~-~~g~~~i~iN~~ 219 (253)
T 1ma3_A 179 EEAKHCDAFMVVGSSLV-VYPAAEL-PYIAK-KAGAKMIIVNAE 219 (253)
T ss_dssp HHHHHCSEEEEESCCSC-EETGGGH-HHHHH-HHTCEEEEEESS
T ss_pred HHHHhCCEEEEECCCce-eccHHHH-HHHHH-HcCCeEEEEeCC
Confidence 44678999999998543 3454332 33333 468999999984
No 61
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=36.91 E-value=2.7e+02 Score=26.13 Aligned_cols=199 Identities=10% Similarity=-0.020 Sum_probs=91.5
Q ss_pred CCCcEEEEEccC----CCcchhhhhhhHhhhhhcCCcEEEEEcCCCC------cccc---hhhhcccHHHHHHHHccCch
Q psy14128 2 EEADLILLIGTN----PRFEAPLFNARIRKGYLTNELDVAYIGPKVD------LRYD---YEHLGESADLIKQLASGSHP 68 (393)
Q Consensus 2 e~~d~~llvG~n----~r~e~plln~RiRk~~~~~~~~v~~ig~~~d------~~~~---~~~~g~~~~~l~~i~~~~~~ 68 (393)
++.|.+++.|.. ++. .|-+-.-||+.+. ++..|..|....- +.-. ..|.+. ...|.+ .| ..
T Consensus 88 ~~~D~livpGG~~~~~~~~-~~~~~~~l~~~~~-~~~~i~aiC~G~~~La~aGlL~g~~~T~~~~~-~~~l~~--~g-~~ 161 (396)
T 3uk7_A 88 SKYDGLVIPGGRAPEYLAL-TASVVELVKEFSR-SGKPIASICHGQLILAAADTVNGRKCTAYATV-GPSLVA--AG-AK 161 (396)
T ss_dssp GGCSEEEECCBSHHHHHTT-CHHHHHHHHHHHH-TTCCEEEETTTHHHHHHTTCCTTCEECCCGGG-HHHHHH--TT-CE
T ss_pred ccCCEEEECCCcchhhccc-CHHHHHHHHHHHH-cCCEEEEECchHHHHHhccccCCCEeecCcch-HHHHHH--CC-CE
Confidence 457999999875 222 3445566888885 6888888865211 1000 011110 111111 01 01
Q ss_pred HHhhhhhcCCCEEEeCCceeeeChHHHHHHHHHHHHHh----ccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCcccc
Q psy14128 69 FSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAK----VTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTE 144 (393)
Q Consensus 69 ~~~~l~r~~~PlI~~g~~~~~~~~~~al~~~a~~l~~~----~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~ 144 (393)
+.+. +...+.+..|+-+......++++....-+.+. .....+++++........|.......++.-|..-....
T Consensus 162 ~~~~--~~~~~~v~Dg~iiT~~g~~~~~d~al~li~~l~g~~~~~~~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs 239 (396)
T 3uk7_A 162 WVEP--ITPDVCVVDGSLITAATYEGHPEFIQLFVKALGGKITGANKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVC 239 (396)
T ss_dssp ECCC--SSTTCEEEETTEEEESSGGGHHHHHHHHHHHTTCEEECCCCEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEEC
T ss_pred EECC--CCCcceEecCCEEEecCcccHHHHHHHHHHHHhccchhccceEEEEecCCCcchhHHHHHHHHHHCCCEEEEEC
Confidence 1111 11233455555444444444444433333222 12334688877665555555555555565551100000
Q ss_pred C--CC---Ccc---c---h--h-hhhhhcccCCCCccCc--cccCEEEEecCCcC---ccccHHHHHHHHhhhcCCceEE
Q psy14128 145 Y--AF---PLE---G---A--G-TDLRANYLLNNKIAGA--EEADLILLIGTNPR---FEAPLFNARIRKGYLTNELDVA 205 (393)
Q Consensus 145 ~--~~---~~~---~---~--~-~~~~~~~~~~~~~~~i--e~AD~IL~iG~n~~---~~~p~l~~rlr~a~~~~gakii 205 (393)
+ .- +.. . . . ............++++ +..|++++-|.... ...+-+-..+|++. ++|..|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGg~~~~~~~~~~~~~~~l~~~~-~~~~~i~ 318 (396)
T 3uk7_A 240 PEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGRAPEYLALNEHVLNIVKEFM-NSEKPVA 318 (396)
T ss_dssp TTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHH-HTTCCEE
T ss_pred CCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCCEEEECCCcchhhhccCHHHHHHHHHHH-HCCCEEE
Confidence 0 00 000 0 0 0 0000011223345554 57899999887521 23455566688887 4787777
Q ss_pred EEcC
Q psy14128 206 YIGP 209 (393)
Q Consensus 206 vi~p 209 (393)
.|-.
T Consensus 319 aiC~ 322 (396)
T 3uk7_A 319 SICH 322 (396)
T ss_dssp EEGG
T ss_pred EEch
Confidence 6654
No 62
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=36.75 E-value=21 Score=31.94 Aligned_cols=41 Identities=10% Similarity=0.061 Sum_probs=27.9
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
+.++++|++|++|+... -.|.... .+.+. ++|++++.|++.
T Consensus 176 ~~~~~adl~lviGTSl~-V~P~~~l-~~~a~-~~g~~~i~IN~~ 216 (246)
T 1yc5_A 176 GLSSRASLMIVLGSSLV-VYPAAEL-PLITV-RSGGKLVIVNLG 216 (246)
T ss_dssp HHHHHCSEEEEESCCSC-EETGGGH-HHHHH-HHTCEEEEECSS
T ss_pred HHHhcCCEEEEECCCCc-chhHHHH-HHHHH-HcCCeEEEEeCC
Confidence 44678999999998543 3464332 33333 468999999984
No 63
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=35.35 E-value=78 Score=31.96 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.++++|+|++|.++ . ++ ...+..|++.+|.-+
T Consensus 196 ~~~~~~l~~a~rpvil~G~g~-~--~a---~~~l~~lae~~~~Pv 234 (590)
T 1v5e_A 196 DAAVELLNNSKRPVIYAGIGT-M--GH---GPAVQELARKIKAPV 234 (590)
T ss_dssp HHHHHHHHHCSSEEEEECGGG-T--TC---HHHHHHHHHHHTCCE
T ss_pred HHHHHHHHhCCCeEEEEcCch-h--HH---HHHHHHHHHHHCCCE
Confidence 347888999999999999998 4 22 345667777777443
No 64
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=33.92 E-value=23 Score=33.68 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=28.3
Q ss_pred cCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 167 AGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 167 ~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
+.++.||++|++|+..... |...+ .+.+. ++|++|++|++.
T Consensus 202 ~~~~~aDllLViGTSL~V~-Paa~L-p~~a~-~~G~~vviIN~~ 242 (355)
T 3pki_A 202 EASRNADLSITLGTSLQIR-PSGNL-PLATK-RRGGRLVIVNLQ 242 (355)
T ss_dssp HHHHHCSEEEEESCCCCST-TGGGT-THHHH-HTTCEEEEECSS
T ss_pred HHHhcCCEEEEEeeCCCch-hhhhh-HHHHH-hcCCEEEEECCC
Confidence 4468999999999976543 43222 23343 478999999984
No 65
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=32.37 E-value=16 Score=30.94 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=25.1
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK 210 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~ 210 (393)
...+++||+||.+|+.......... ... .+..++|++-||-.
T Consensus 103 ~~~~~~aDLvI~iG~rf~~~~~~t~-~~~--~fap~akii~Idk~ 144 (174)
T 1ytl_A 103 FDGQGNYDLVLMLGSIYYHGSQMLA-AIK--NFAPHIRALAIDRY 144 (174)
T ss_dssp TTSSCCCSEEEEESCCHHHHHHHHH-HHH--HHCTTCEEEECSSS
T ss_pred hcccCCCCEEEEECCcCCccccccc-ccc--ccCCCCeEEEeCCC
Confidence 4445899999999986531111111 111 12347899999853
No 66
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=28.88 E-value=62 Score=32.79 Aligned_cols=40 Identities=25% Similarity=0.210 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.++++|+|++|.+. . . .....+..|++.+|+-+
T Consensus 234 ~~~~~~l~~A~rPvIl~G~g~-~-~---~a~~~l~~lae~~~~PV 273 (604)
T 2x7j_A 234 SDVAEMLAEAEKGMIVCGELH-S-D---ADKENIIALSKALQYPI 273 (604)
T ss_dssp HHHHHHHHHCSSEEEEECCCC-C-H---HHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHhhcCCeEEEECCCC-c-H---HHHHHHHHHHHhcCceE
Confidence 457888999999999999887 3 2 34567788888887443
No 67
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=27.45 E-value=1.9e+02 Score=23.57 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCCCccCccc
Q psy14128 92 DGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEE 171 (393)
Q Consensus 92 ~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~ 171 (393)
+.+.+..+++.|.+ ++.|.+++.+....-..+...+|. .+|.+-..... ....+.. ....+..
T Consensus 25 ~~~~l~~~~~~i~~----a~~I~i~G~G~S~~~a~~~~~~l~-~~g~~~~~~~~------~~~~~~~------~~~~~~~ 87 (187)
T 3sho_A 25 QPEAIEAAVEAICR----ADHVIVVGMGFSAAVAVFLGHGLN-SLGIRTTVLTE------GGSTLTI------TLANLRP 87 (187)
T ss_dssp CHHHHHHHHHHHHH----CSEEEEECCGGGHHHHHHHHHHHH-HTTCCEEEECC------CTHHHHH------HHHTCCT
T ss_pred CHHHHHHHHHHHHh----CCEEEEEecCchHHHHHHHHHHHH-hcCCCEEEecC------CchhHHH------HHhcCCC
Confidence 35677777777765 357777766655554444444553 36633211110 0011110 1223455
Q ss_pred cCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 172 ADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 172 AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
-|+++++.. ..++.. +..-++.+. ++|++++.|-.
T Consensus 88 ~d~~i~iS~-sG~t~~-~~~~~~~ak-~~g~~vi~IT~ 122 (187)
T 3sho_A 88 TDLMIGVSV-WRYLRD-TVAALAGAA-ERGVPTMALTD 122 (187)
T ss_dssp TEEEEEECC-SSCCHH-HHHHHHHHH-HTTCCEEEEES
T ss_pred CCEEEEEeC-CCCCHH-HHHHHHHHH-HCCCCEEEEeC
Confidence 688888754 333333 333356654 57999998865
No 68
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=26.38 E-value=67 Score=32.21 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCC
Q psy14128 234 SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 277 (393)
Q Consensus 234 ~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~ 277 (393)
..++++.|.++++|+|++|.+..... ....+..|++.+|+
T Consensus 199 i~~~~~~l~~a~rpvil~G~g~~~~~----a~~~l~~lae~~~~ 238 (568)
T 2wvg_A 199 VEETLKFIANRDKVAVLVGSKLRAAG----AEEAAVKFADALGG 238 (568)
T ss_dssp HHHHHHHHTTCCCEEEEECTTTTTTT----CHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCEEEECccccccc----hHHHHHHHHHHhCC
Confidence 34588899999999999999887533 23566777777763
No 69
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=26.05 E-value=2.8e+02 Score=22.95 Aligned_cols=98 Identities=11% Similarity=0.140 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCCCccCccc
Q psy14128 92 DGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEE 171 (393)
Q Consensus 92 ~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~ 171 (393)
+.+.+..+++.|.+. .+.|-+++.+....-..+...+|.+ +|.+-... . ...+ .......+..
T Consensus 30 ~~~~i~~~~~~i~~a---~~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~~------~--~~~~-----~~~~~~~~~~ 92 (201)
T 3fxa_A 30 SEEALVKTVEKIAEC---TGKIVVAGCGTSGVAAKKLVHSFNC-IERPAVFL------T--PSDA-----VHGTLGVLQK 92 (201)
T ss_dssp CHHHHHHHHHHHHHC---SSCEEEECCTHHHHHHHHHHHHHHH-TTCCEEEC------C--HHHH-----TTTGGGGCCT
T ss_pred CHHHHHHHHHHHHhc---CCcEEEEEecHHHHHHHHHHHHHHh-cCCcEEEe------C--chHH-----HhhhhhcCCC
Confidence 356788888877652 2378777666555444444455544 56321111 0 0111 1112334566
Q ss_pred cCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 172 ADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 172 AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
-|+++++...- ++..++ .-++.+. ++|++++.|-.
T Consensus 93 ~dvvI~iS~sG-~t~~~~-~~~~~ak-~~g~~vi~IT~ 127 (201)
T 3fxa_A 93 EDILILISKGG-NTGELL-NLIPACK-TKGSTLIGVTE 127 (201)
T ss_dssp TCEEEEECSSS-CCHHHH-TTHHHHH-HHTCEEEEEES
T ss_pred CCEEEEEeCCC-CCHHHH-HHHHHHH-HcCCeEEEEEC
Confidence 68888886543 333333 3345554 57999998865
No 70
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=26.02 E-value=2.9e+02 Score=23.18 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=24.2
Q ss_pred ccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 169 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 169 ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
+..-|+++++...-++ +-+..-++.+. ++|++++.|-.
T Consensus 129 ~~~~DvvI~iS~SG~t--~~~i~~~~~ak-~~G~~vIaIT~ 166 (212)
T 2i2w_A 129 GREGDVLLGISTSGNS--ANVIKAIAAAR-EKGMKVITLTG 166 (212)
T ss_dssp CCTTCEEEEECSSSCC--HHHHHHHHHHH-HHTCEEEEEEE
T ss_pred CCCCCEEEEEECCCCC--HHHHHHHHHHH-HCCCeEEEEEC
Confidence 4567888888654433 33334455554 57999998865
No 71
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=25.82 E-value=73 Score=31.91 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCC
Q psy14128 234 SHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 277 (393)
Q Consensus 234 ~~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~ 277 (393)
..++++.|.++++|+|++|.++.... ....+..|++.+|.
T Consensus 199 i~~~~~~l~~a~rpvi~~G~g~~~~~----a~~~l~~lae~~~~ 238 (566)
T 2vbi_A 199 VDATVALLEKSASPVMLLGSKLRAAN----ALAATETLADKLQC 238 (566)
T ss_dssp HHHHHHHHHTCSCEEEEECTTTTTTT----CHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCEEEECcCccccc----hHHHHHHHHHHhCC
Confidence 34588899999999999999886532 23566777777773
No 72
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=25.21 E-value=53 Score=30.07 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=27.6
Q ss_pred CccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCC
Q psy14128 168 GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 211 (393)
Q Consensus 168 ~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~ 211 (393)
.++.+|++|++|+.... .|...+ .+. . ++|+++++|++..
T Consensus 208 ~~~~~DlllviGTSl~V-~Pa~~l-~~~-~-~~~~~~v~IN~~~ 247 (289)
T 1q1a_A 208 KHPQQPLVIVVGTSLAV-YPFASL-PEE-I-PRKVKRVLCNLET 247 (289)
T ss_dssp --CCCCEEEEESCCCCE-ETTTHH-HHH-S-CTTSEEEEESSSC
T ss_pred HhccCCEEEEEccCCCh-hhHHHH-HHH-H-hcCCCEEEEECCC
Confidence 46899999999998765 464433 333 3 3589999999843
No 73
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=24.75 E-value=88 Score=28.54 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=27.9
Q ss_pred CCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 41 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~ 41 (393)
+++|++|+|||.+.. .| .+++-+.+. .++++..||.
T Consensus 210 ~~~DlllviGTSl~V-~P--a~~l~~~~~-~~~~~v~IN~ 245 (289)
T 1q1a_A 210 PQQPLVIVVGTSLAV-YP--FASLPEEIP-RKVKRVLCNL 245 (289)
T ss_dssp CCCCEEEEESCCCCE-ET--TTHHHHHSC-TTSEEEEESS
T ss_pred ccCCEEEEEccCCCh-hh--HHHHHHHHh-cCCCEEEEEC
Confidence 689999999999998 35 345555553 5889999997
No 74
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=23.47 E-value=1e+02 Score=27.54 Aligned_cols=96 Identities=20% Similarity=0.189 Sum_probs=48.7
Q ss_pred CceeeeChHHHHHHHHHHHHHhccCCC-ceEEEcCc-c----cHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhh--
Q psy14128 85 ADMLSRSDGAAVLALVQQLAAKVTCES-DVAGVVGS-L----ADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDL-- 156 (393)
Q Consensus 85 ~~~~~~~~~~al~~~a~~l~~~~~g~~-sv~~l~g~-~----~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~-- 156 (393)
+...-.+|+..+..+++.+.......+ .+--+.|+ . ..........+|++.+|.+...... |........
T Consensus 61 ~~vIGv~wG~Tl~~v~~~l~~~~~~~~~~~V~l~Gg~~~~~~~~~~~n~i~~~lA~~~~~~~~~l~a--P~~~~~~~~~~ 138 (266)
T 3efb_A 61 GDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLTYSAAAKLKGESHLADF--PALLDNPLIRN 138 (266)
T ss_dssp TCEEEECCSHHHHHHHHTCCCCSSCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHHHTTCEECCCCS--BSBCSSHHHHH
T ss_pred CCEEEEcccHHHHHHHHhcCccCCCCCeEEEEcCCCCCCCCccccCHHHHHHHHHHHhCCeEEEEeC--CeecCCHHHHH
Confidence 456788999999999988743211112 21223333 1 1222334578999999865332211 111011111
Q ss_pred --hhcccCCCCccCccccCEEEE-ecCCc
Q psy14128 157 --RANYLLNNKIAGAEEADLILL-IGTNP 182 (393)
Q Consensus 157 --~~~~~~~~~~~~ie~AD~IL~-iG~n~ 182 (393)
.........++...++|+.|+ ||+..
T Consensus 139 ~l~~~~~i~~vl~~~~~aDiai~GIG~~~ 167 (266)
T 3efb_A 139 GIMQSQHFKTISAYWDNLDIALVGIGSPA 167 (266)
T ss_dssp HHHTSHHHHHHHHHHHTCSEEEECCBCCC
T ss_pred HHHhChHHHHHHHHHhcCCEEEEecCCCC
Confidence 111111122455688998766 88753
No 75
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=23.47 E-value=1.1e+02 Score=29.06 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=37.2
Q ss_pred CCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcCC-C------CcccchhhhcccHHHHHHHHc
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPK-V------DLRYDYEHLGESADLIKQLAS 64 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~~-~------d~~~~~~~~g~~~~~l~~i~~ 64 (393)
+++|++|+|||-+.. .| .+++-+.+. .++++..||.. . +...++...|.-..++..+++
T Consensus 218 ~~aDllLviGTSl~V-~P--aa~l~~~~~-~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~ 283 (361)
T 1q14_A 218 PQQPLVIVVGTSLAV-YP--FASLPEEIP-RKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVE 283 (361)
T ss_dssp -CCCEEEEESCCCCS-TT--GGGHHHHSC-TTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCc-hh--HHHHHHHHh-cCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHH
Confidence 479999999999998 45 345655554 58899999973 2 122333334544455555543
No 76
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=22.77 E-value=57 Score=32.66 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.++++|+|++|.++.... ....+..|++.+|.-+
T Consensus 202 ~~~~~~l~~a~rpvIl~G~g~~~~~----a~~~l~~lae~~~~Pv 242 (563)
T 2vk8_A 202 DTILVLDKDAKNPVILADACCSRHD----VKAETKKLIDLTQFPA 242 (563)
T ss_dssp HHHHHHHHHCSSEEEEECHHHHHTT----CHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHhCCCCEEEECcCccccc----hHHHHHHHHHHhCCCE
Confidence 4588899999999999998876432 2356677888877443
No 77
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=22.33 E-value=53 Score=32.88 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.++++|+|++|.++.... ....+..|++.+|.-+
T Consensus 202 ~~~~~~l~~a~rpvIl~G~g~~~~~----a~~~l~~lae~~~~Pv 242 (564)
T 2q28_A 202 TSAISLLAKAERPLIILGKGAAYSQ----ADEQLREFIESAQIPF 242 (564)
T ss_dssp HHHHHHHHHCSSEEEEECHHHHHHT----CHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHcCCCcEEEECccccccc----HHHHHHHHHHHhCCCE
Confidence 3478889999999999998876432 2356777888887433
No 78
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=21.92 E-value=46 Score=30.56 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=27.5
Q ss_pred CCCcEEEEEccCCCcchhhhhhhHhhhhhcCCcEEEEEcC
Q psy14128 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 41 (393)
Q Consensus 2 e~~d~~llvG~n~r~e~plln~RiRk~~~~~~~~v~~ig~ 41 (393)
+++|++|+|||-+... | .+.+-..+ +.+.++..||.
T Consensus 196 ~~aDlllviGTSl~V~-P--aa~l~~~~-~~~~~~v~IN~ 231 (285)
T 3glr_A 196 PMADLLLILGTSLEVE-P--FASLTEAV-RSSVPRLLINR 231 (285)
T ss_dssp HHCSEEEEESCCCCEE-T--TGGGGGSS-CTTSCEEEEES
T ss_pred hcCCEEEEeCCCCccc-c--HHHHHHHH-hCCCcEEEECC
Confidence 4689999999999885 4 34555555 36778889997
No 79
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=21.89 E-value=3.2e+02 Score=22.14 Aligned_cols=92 Identities=11% Similarity=0.034 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCCCccCccc
Q psy14128 92 DGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEE 171 (393)
Q Consensus 92 ~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~ 171 (393)
+.+.+..+++.|.+ ++.|-+++.+....-..+...+|. .+|.+-... .+. ....+..
T Consensus 23 ~~~~i~~~~~~i~~----a~~I~i~G~G~S~~~A~~~~~~l~-~~g~~~~~~----------~~~--------~~~~~~~ 79 (186)
T 1m3s_A 23 SNEEADQLADHILS----SHQIFTAGAGRSGLMAKSFAMRLM-HMGFNAHIV----------GEI--------LTPPLAE 79 (186)
T ss_dssp CHHHHHHHHHHHHH----CSCEEEECSHHHHHHHHHHHHHHH-HTTCCEEET----------TST--------TCCCCCT
T ss_pred CHHHHHHHHHHHHc----CCeEEEEecCHHHHHHHHHHHHHH-hcCCeEEEe----------Ccc--------cccCCCC
Confidence 34677888887765 356777666644443334444543 355321100 000 1233556
Q ss_pred cCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 172 ADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 172 AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
-|+++++...-++ +-+-.-++.+. ++|++++.|-.
T Consensus 80 ~d~vI~iS~sG~t--~~~~~~~~~ak-~~g~~vi~IT~ 114 (186)
T 1m3s_A 80 GDLVIIGSGSGET--KSLIHTAAKAK-SLHGIVAALTI 114 (186)
T ss_dssp TCEEEEECSSSCC--HHHHHHHHHHH-HTTCEEEEEES
T ss_pred CCEEEEEcCCCCc--HHHHHHHHHHH-HCCCEEEEEEC
Confidence 7888888654433 32333355554 57999998865
No 80
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=21.80 E-value=56 Score=32.77 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 235 HAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 235 ~~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
.++++.|.++++|+|++|.++.... ....+..|++.+|.-+
T Consensus 204 ~~~~~~l~~a~rpvIl~G~g~~~~~----a~~~l~~lae~~~~Pv 244 (568)
T 2c31_A 204 ARAADLIKNAKRPVIMLGKGAAYAQ----CDDEIRALVEETGIPF 244 (568)
T ss_dssp HHHHHHHHTCSSEEEEECHHHHHHT----CHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHhCCCCEEEECccccccc----HHHHHHHHHHHhCCCE
Confidence 3478889999999999998876432 2356777888887433
No 81
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=21.36 E-value=3.2e+02 Score=21.98 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEcCcccHHHHHHHHHHHHHHhCCCCccccCCCCccchhhhhhhcccCCCCccCccc
Q psy14128 92 DGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEE 171 (393)
Q Consensus 92 ~~~al~~~a~~l~~~~~g~~sv~~l~g~~~t~E~~~~~~k~~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~~~~~ie~ 171 (393)
+.+.+..+++.|.+ ++.|-+++.+....-..+...+|. .+|.+-... .+. ....+..
T Consensus 26 ~~~~i~~~~~~i~~----a~~I~i~G~G~S~~~A~~~~~~l~-~~g~~~~~~----------~~~--------~~~~~~~ 82 (180)
T 1jeo_A 26 WKNKLDSLIDRIIK----AKKIFIFGVGRSGYIGRCFAMRLM-HLGFKSYFV----------GET--------TTPSYEK 82 (180)
T ss_dssp HHHHHHHHHHHHHH----CSSEEEECCHHHHHHHHHHHHHHH-HTTCCEEET----------TST--------TCCCCCT
T ss_pred CHHHHHHHHHHHHh----CCEEEEEeecHHHHHHHHHHHHHH-HcCCeEEEe----------CCC--------ccccCCC
Confidence 45667777777754 356777666644443334444443 355321110 000 1233566
Q ss_pred cCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 172 ADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 172 AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
-|+++++...-++ +-+..-++.+. ++|++++.|-.
T Consensus 83 ~d~vi~iS~sG~t--~~~~~~~~~ak-~~g~~vi~IT~ 117 (180)
T 1jeo_A 83 DDLLILISGSGRT--ESVLTVAKKAK-NINNNIIAIVC 117 (180)
T ss_dssp TCEEEEEESSSCC--HHHHHHHHHHH-TTCSCEEEEES
T ss_pred CCEEEEEeCCCCc--HHHHHHHHHHH-HCCCcEEEEeC
Confidence 7888888764443 33333355554 57999998865
No 82
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=21.24 E-value=3.4e+02 Score=22.20 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=23.6
Q ss_pred ccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcC
Q psy14128 169 AEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGP 209 (393)
Q Consensus 169 ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p 209 (393)
+..-|+++++...- ++..++ .-++.+. ++|++++.|-.
T Consensus 107 ~~~~DvvI~iS~SG-~t~~~i-~~~~~ak-~~g~~vI~IT~ 144 (196)
T 2yva_A 107 GHAGDVLLAISTRG-NSRDIV-KAVEAAV-TRDMTIVALTG 144 (196)
T ss_dssp CCTTCEEEEECSSS-CCHHHH-HHHHHHH-HTTCEEEEEEC
T ss_pred CCCCCEEEEEeCCC-CCHHHH-HHHHHHH-HCCCEEEEEeC
Confidence 45668887776543 333333 3355554 58999998865
No 83
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=20.83 E-value=28 Score=32.00 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=29.2
Q ss_pred ccCccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCC
Q psy14128 166 IAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKV 211 (393)
Q Consensus 166 ~~~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~ 211 (393)
..+++.||++|++|+.... .|... +..+. +.++++++|++..
T Consensus 192 ~~~~~~aDlllviGTSl~V-~Paa~--l~~~~-~~~~~~v~IN~~~ 233 (285)
T 3glr_A 192 VVDFPMADLLLILGTSLEV-EPFAS--LTEAV-RSSVPRLLINRDL 233 (285)
T ss_dssp HHHHHHCSEEEEESCCCCE-ETTGG--GGGSS-CTTSCEEEEESSC
T ss_pred HHHHhcCCEEEEeCCCCcc-ccHHH--HHHHH-hCCCcEEEECCCC
Confidence 4557889999999997655 35332 23344 4688999999843
No 84
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=20.80 E-value=73 Score=31.56 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCCEEEEcCccccccCHHHHHHHHHHHHHHhCCCc
Q psy14128 236 AFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279 (393)
Q Consensus 236 ~~a~~l~~a~~~~ii~G~~~~~~~~~~~~~~~~~~l~~~tg~~~ 279 (393)
++++.|.++++|+|++|.++.... ....+..|++.+|.-+
T Consensus 192 ~~~~~l~~a~rpvil~G~g~~~~~----a~~~l~~lae~~~~Pv 231 (528)
T 1q6z_A 192 ILVKALNSASNPAIVLGPDVDAAN----ANADCVMLAERLKAPV 231 (528)
T ss_dssp HHHHHHHHCSSCEEEECHHHHHTT----CHHHHHHHHHHHTCCE
T ss_pred HHHHHHhcCCCeEEEECCccchhh----HHHHHHHHHHHHCCCE
Confidence 478889999999999998875422 2356677888887554
No 85
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=20.28 E-value=61 Score=30.79 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=27.2
Q ss_pred CccccCEEEEecCCcCccccHHHHHHHHhhhcCCceEEEEcCCCC
Q psy14128 168 GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVD 212 (393)
Q Consensus 168 ~ie~AD~IL~iG~n~~~~~p~l~~rlr~a~~~~gakiivi~p~~~ 212 (393)
.++.+|++|++|+.... .|+..+ .+ .. ++|+++++|++..+
T Consensus 216 ~~~~aDllLviGTSl~V-~Paa~l-~~-~~-~~g~~~v~IN~~~t 256 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAV-YPFASL-PE-EI-PRKVKRVLCNLETV 256 (361)
T ss_dssp ---CCCEEEEESCCCCS-TTGGGH-HH-HS-CTTSEEEEESSSCC
T ss_pred hhccCCEEEEECCCCCc-hhHHHH-HH-HH-hcCCeEEEEeCCCc
Confidence 46789999999998765 454433 33 33 35899999998443
Done!