RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14128
(393 letters)
>d2fug32 c.81.1.1 (3:247-685) NADH-quinone oxidoreductase chain 3,
Nqo3 {Thermus thermophilus [TaxId: 274]}
Length = 439
Score = 39.6 bits (91), Expect = 5e-04
Identities = 35/223 (15%), Positives = 64/223 (28%), Gaps = 51/223 (22%)
Query: 163 NNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGE 222
+ +AD L++G +P EAP+ + R+ + K RY+ H
Sbjct: 138 PASLEDLLQADFALVLG-DPTEEAPILHLRLSE---------FVRDLKPPHRYN--HGTP 185
Query: 223 SADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHL 282
ADL +++ + + AA E
Sbjct: 186 FADL---------QIKERMPRRTDKMALFAPYRAPLMKWAA------------IHEVHRP 224
Query: 283 GESADLIKQLASGSHAFS------KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAK 336
GE +++ L + AK P++++GA +L + A
Sbjct: 225 GEEREILLALLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTVAA------------ 272
Query: 337 VTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPP 379
+ + AA+ +G PG P
Sbjct: 273 ERARLLAERKGAKVLAMTPAANARGLEAMGVLPGAKGASWDEP 315
>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic
subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 171
Score = 30.8 bits (68), Expect = 0.19
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 71 KKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 109
++ AKKP++ VGA +L+ +DG +L ++L+ +
Sbjct: 5 DLINLAKKPVLYVGAGILNHADGPRLL---KELSDRAQI 40
Score = 30.4 bits (67), Expect = 0.21
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 239 KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 277
+ AKKP++ VGA +L+ +DG +L ++L+ +
Sbjct: 5 DLINLAKKPVLYVGAGILNHADGPRLL---KELSDRAQI 40
Score = 30.4 bits (67), Expect = 0.21
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 301 KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 339
+ AKKP++ VGA +L+ +DG +L ++L+ +
Sbjct: 5 DLINLAKKPVLYVGAGILNHADGPRLL---KELSDRAQI 40
>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 161
Score = 30.1 bits (67), Expect = 0.27
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 239 KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLG 283
KLA +K+ ++ +L A+ V+++ G
Sbjct: 24 NKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKG 68
Score = 29.3 bits (65), Expect = 0.53
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 301 KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 339
KLA +K+ ++ +L A+ V+++
Sbjct: 24 NKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHAT 62
Score = 28.9 bits (64), Expect = 0.63
Identities = 7/47 (14%), Positives = 18/47 (38%)
Query: 71 KKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVV 117
KL+ +K+ ++ +L A+ V+++ G+
Sbjct: 24 NKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIF 70
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 175
Score = 29.5 bits (65), Expect = 0.46
Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 5/90 (5%)
Query: 239 KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQ-----LA 293
K +A K ++VG+ + + A + L V + +
Sbjct: 17 KFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSFFPEENALYIGTSWG 76
Query: 294 SGSHAFSKKLAAAKKPLIVVGADMLSRSDG 323
S+ +K +I + S
Sbjct: 77 EVSYPGVEKTMKEADAVIALAPVFNDYSTT 106
Score = 27.5 bits (60), Expect = 2.3
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 301 KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVPCDW 347
K +A K ++VG+ + + A + L V + +
Sbjct: 17 KFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSFF 63
Score = 26.8 bits (58), Expect = 3.4
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 71 KKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 109
K ++ K ++VG+ + + A + L V
Sbjct: 17 KFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVAT 55
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 177
Score = 29.6 bits (65), Expect = 0.47
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 301 KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVPCDW 347
LA AK P++VVGA + A+ AL ++L V
Sbjct: 14 ALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVL 60
Score = 28.8 bits (63), Expect = 0.79
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 239 KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDH 281
LA AK P++VVGA + A+ AL ++L V
Sbjct: 14 ALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIA 56
Score = 28.0 bits (61), Expect = 1.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 71 KKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 109
L+ AK P++VVGA + A+ AL ++L V
Sbjct: 14 ALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVIT 52
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase
complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 158
Score = 28.4 bits (63), Expect = 0.98
Identities = 18/122 (14%), Positives = 32/122 (26%), Gaps = 29/122 (23%)
Query: 59 IKQLASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVG 118
K +A + AK+PL++VG DM + + + V
Sbjct: 9 GKPVA-------NMIKKAKRPLLIVGPDM--TDEMFERVKKFVEKDITVV---------- 49
Query: 119 SLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLI 178
A + G + G DL+L++
Sbjct: 50 ------ATGSAITRFIDAGLGEKVNYAVLHELT----QFLLDPDWKGFDGQGNYDLVLML 99
Query: 179 GT 180
G+
Sbjct: 100 GS 101
Score = 26.5 bits (58), Expect = 3.6
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 227 IKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 277
K +A + AK+PL++VG DM + + + V
Sbjct: 9 GKPVA-------NMIKKAKRPLLIVGPDM--TDEMFERVKKFVEKDITVVA 50
Score = 26.5 bits (58), Expect = 3.6
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 289 IKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 339
K +A + AK+PL++VG DM + + + V
Sbjct: 9 GKPVA-------NMIKKAKRPLLIVGPDM--TDEMFERVKKFVEKDITVVA 50
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans
[TaxId: 1377]}
Length = 177
Score = 28.5 bits (62), Expect = 0.98
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 217 YEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGA 253
Y + +A I + L +K+P+I G
Sbjct: 1 YAPIAPAAQDIDAAV-------ELLNNSKRPVIYAGI 30
Score = 28.5 bits (62), Expect = 1.00
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 7/31 (22%)
Query: 285 SADLIKQLASGSHAFSKKLAAAKKPLIVVGA 315
+A I + L +K+P+I G
Sbjct: 7 AAQDIDAAV-------ELLNNSKRPVIYAGI 30
Score = 28.5 bits (62), Expect = 1.0
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 49 YEHLGESADLIKQLASGSHPFSKKLSAAKKPLIVVGA 85
Y + +A I + L+ +K+P+I G
Sbjct: 1 YAPIAPAAQDIDAAV-------ELLNNSKRPVIYAGI 30
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase
{Klebsiella pneumoniae [TaxId: 573]}
Length = 179
Score = 28.3 bits (62), Expect = 1.1
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 301 KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVPCDWK 348
K +A AK P+ ++G + A+ L++ VT
Sbjct: 15 KLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVN 62
Score = 27.6 bits (60), Expect = 2.3
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 239 KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDH 281
K +A AK P+ ++G + A+ L++ VT
Sbjct: 15 KLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQA 57
Score = 26.4 bits (57), Expect = 4.3
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 71 KKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTC 109
K ++ AK P+ ++G + A+ L++ VT
Sbjct: 15 KLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTS 53
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha
chain {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 670
Score = 28.8 bits (63), Expect = 1.2
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 118 GSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEE---ADL 174
G E A K + S +L + A T + ++ + ++ AD
Sbjct: 111 GQWTIWEGYAASKLMRAGFRSNNLDPNARHCMASAATAFMRTFGMDEPMGCYDDFEAADA 170
Query: 175 ILLIGTNPRFEAPLFNARIRKGYL 198
+L G+N P+ +R+ L
Sbjct: 171 FVLWGSNMAEMHPILWSRLTDRRL 194
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 160
Score = 27.9 bits (61), Expect = 1.3
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 239 KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQLASGSHA 298
K L +A P IV+G D+ + + A + L ++L A V G
Sbjct: 14 KALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMP 73
Query: 299 F----SKKLAAAKKPLIVVGADMLSRSDG 323
+L ++V+GA +
Sbjct: 74 AGIAAISQLLEGHDVVLVIGAPVFRYHQY 102
Score = 26.4 bits (57), Expect = 4.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 301 KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVPCDW 347
K L +A P IV+G D+ + + A + L ++L A V P
Sbjct: 14 KALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP 60
Score = 25.6 bits (55), Expect = 8.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 71 KKLSAAKKPLIVVGA 85
K L++A P IV+G
Sbjct: 14 KALNSASNPAIVLGP 28
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter
formigenes [TaxId: 847]}
Length = 175
Score = 28.0 bits (61), Expect = 1.5
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 285 SADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVP 344
+ D I + A + AK+P+I++G + ALV++
Sbjct: 5 AEDAIARAA-------DLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAK 57
Query: 345 CDW 347
Sbjct: 58 GLL 60
Score = 27.3 bits (59), Expect = 2.9
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 223 SADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDH 281
+ D I + A + AK+P+I++G + ALV++
Sbjct: 5 AEDAIARAA-------DLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMA 56
Score = 26.9 bits (58), Expect = 3.5
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 55 SADLIKQLASGSHPFSKKLSAAKKPLIVVGA 85
+ D I + A + AK+P+I++G
Sbjct: 5 AEDAIARAA-------DLIKNAKRPVIMLGK 28
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus
plantarum [TaxId: 1590]}
Length = 183
Score = 28.1 bits (61), Expect = 1.6
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 223 SADLIKQLASGSHAFSKKLAAAKKPLIVVGA 253
+ +L + L AA++PLI G
Sbjct: 16 DVQAVTRLT-------QTLLAAERPLIYYGI 39
Score = 28.1 bits (61), Expect = 1.6
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 285 SADLIKQLASGSHAFSKKLAAAKKPLIVVGA 315
+ +L + L AA++PLI G
Sbjct: 16 DVQAVTRLT-------QTLLAAERPLIYYGI 39
Score = 27.7 bits (60), Expect = 1.9
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 55 SADLIKQLASGSHPFSKKLSAAKKPLIVVGA 85
+ +L + L AA++PLI G
Sbjct: 16 DVQAVTRLT-------QTLLAAERPLIYYGI 39
>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia
coli [TaxId: 562]}
Length = 564
Score = 28.4 bits (62), Expect = 1.8
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 118 GSLADAEAMVALKDLLNKLGSEDLYTEYAF---PLEGAGTDLRANYLLNNKIAGAEEADL 174
+ V K +G+ ++ P N ++N I + DL
Sbjct: 110 RGTGNETNYVMQKFARAVIGTNNVDCCARVCHGPSVAGLHQSVGNGAMSNAINEIDNTDL 169
Query: 175 ILLIGTNPRFEAPLFNARIRK 195
+ + G NP P+ +
Sbjct: 170 VFVFGYNPADSHPIVANHVIN 190
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana),
chloroplast [TaxId: 3702]}
Length = 179
Score = 27.6 bits (60), Expect = 1.9
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 55 SADLIKQLASGSHPFSKKLSAAKKPLIVVGA 85
++Q+ + +S +KKP++ VG
Sbjct: 5 EDSHLEQIV-------RLISESKKPVLYVGG 28
Score = 27.6 bits (60), Expect = 2.0
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 223 SADLIKQLASGSHAFSKKLAAAKKPLIVVGA 253
++Q+ + ++ +KKP++ VG
Sbjct: 5 EDSHLEQIV-------RLISESKKPVLYVGG 28
Score = 27.6 bits (60), Expect = 2.0
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 285 SADLIKQLASGSHAFSKKLAAAKKPLIVVGA 315
++Q+ + ++ +KKP++ VG
Sbjct: 5 EDSHLEQIV-------RLISESKKPVLYVGG 28
>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 179
Score = 27.1 bits (59), Expect = 3.2
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 239 KKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQ-----LA 293
+ AK P+I+ A A L+ G ++ + +
Sbjct: 25 ALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSISEQHPRYGGVYVG 84
Query: 294 SGSHAFSKKLAAAKKPLIVVGADMLSRSDG 323
+ S K+ + ++ VGA + + G
Sbjct: 85 TLSKPEVKEAVESADLILSVGALLSDFNTG 114
>d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 141
Score = 26.2 bits (58), Expect = 3.9
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 46 RYDYEHL-GESA-----DLIKQLASGSHPFSKKLSAAKKPLIVVGADMLSRSD 92
RYDYE + E A DL + S K+ SA K V AD D
Sbjct: 6 RYDYEEVEAEGATKMMKDLEALMFDRSFV-GKQFSANDKVYTVEKADNFEYHD 57
Score = 25.8 bits (57), Expect = 5.8
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 214 RYDYEHL-GESA----DLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSD 260
RYDYE + E A ++ L K+ +A K V AD D
Sbjct: 6 RYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHD 57
>d1jvaa2 d.95.2.2 (A:464-581) VMA1-derived endonuclease (VDE)
PI-SceI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 118
Score = 25.6 bits (56), Expect = 6.1
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 12/90 (13%)
Query: 111 SDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAE 170
SD A D M + + KL Y + P L +K+
Sbjct: 41 SDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKEPQVA------KTVNLYSKVVRGN 94
Query: 171 EADLILLIGTNPRFEAPLFNARIRKGYLTN 200
I N E PL++A + G+L +
Sbjct: 95 G------IRNNLNTENPLWDAIVGLGFLKD 118
>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
chain {Escherichia coli [TaxId: 562]}
Length = 1074
Score = 26.3 bits (57), Expect = 7.5
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 2/85 (2%)
Query: 113 VAGVVGSLADAE-AMVALKDLLNKLGSEDL-YTEYAFPLEGAGTDLRANYLLNNKIAGAE 170
VAG A + + + L+ +G L + ++ L A + A
Sbjct: 185 VAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPESADWY 244
Query: 171 EADLILLIGTNPRFEAPLFNARIRK 195
+ I+ G+N +
Sbjct: 245 NSSYIIAWGSNVPQTRTPDAHFFTE 269
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima
[TaxId: 2336]}
Length = 364
Score = 26.1 bits (56), Expect = 8.2
Identities = 6/66 (9%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 306 AKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDI 365
++ +V+ + G + ++ D + + L + + +
Sbjct: 30 GERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFGGECSD-EEIERLSGLVEEETDVVV 88
Query: 366 GYKPGT 371
G G
Sbjct: 89 GIGGGK 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.368
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,344,712
Number of extensions: 60214
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 42
Length of query: 393
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,213,086
Effective search space: 371204316
Effective search space used: 371204316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)