Query psy14129
Match_columns 160
No_of_seqs 158 out of 1069
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 20:16:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoe_A Acetylcholine-binding p 100.0 1.6E-37 5.6E-42 234.2 16.0 148 3-154 17-175 (205)
2 2qc1_B Acetylcholine receptor 100.0 2.2E-37 7.6E-42 234.7 16.2 148 5-153 19-179 (212)
3 4aod_A Acetylcholine-binding p 100.0 3.6E-37 1.2E-41 232.5 15.8 148 3-154 17-175 (205)
4 3sq6_A ACHBP, neuronal acetylc 100.0 8.4E-37 2.9E-41 230.3 15.2 147 5-154 17-173 (204)
5 3igq_A GLR4197 protein; plgic 100.0 2.3E-36 8E-41 227.4 10.3 146 4-153 5-162 (201)
6 2bg9_B Acetylcholine receptor 100.0 1.1E-34 3.7E-39 236.1 14.4 150 4-154 17-180 (370)
7 2bg9_A Acetylcholine receptor 100.0 3E-35 1E-39 239.3 10.3 148 5-153 18-178 (370)
8 2bg9_C Acetylcholine receptor 100.0 1.6E-34 5.4E-39 235.1 14.1 146 7-153 16-177 (369)
9 4aq5_A Acetylcholine receptor 100.0 5.7E-35 1.9E-39 243.5 10.5 148 5-153 42-202 (461)
10 2bg9_E Acetylcholine receptor 100.0 9.5E-35 3.2E-39 236.4 10.9 150 3-153 15-178 (370)
11 3tlw_A GLR4197 protein, GLIC; 100.0 4.7E-34 1.6E-38 228.2 14.5 147 4-154 9-167 (321)
12 3rhw_A Avermectin-sensitive gl 100.0 3.8E-34 1.3E-38 230.9 13.5 139 5-143 17-165 (347)
13 4aq5_C Acetylcholine receptor 100.0 1.5E-34 5.3E-39 244.1 11.6 136 6-142 36-185 (522)
14 4afh_A ACHBP; acetylcholine-bi 100.0 5.8E-34 2E-38 218.3 13.5 139 8-153 26-182 (230)
15 2bj0_A Acetylcholine-binding p 100.0 4.7E-33 1.6E-37 209.6 15.4 143 3-153 13-172 (203)
16 4aq5_B Acetylcholine receptor 100.0 8.2E-34 2.8E-38 238.3 10.3 138 3-141 40-185 (493)
17 4aq5_E Acetylcholine receptor 100.0 7.3E-34 2.5E-38 238.3 9.7 138 3-142 15-161 (488)
18 1uw6_A Acetylcholine-binding p 100.0 5.1E-32 1.8E-36 205.0 15.4 143 3-153 16-174 (211)
19 2wn9_A Soluble acetylcholine r 100.0 2.4E-32 8.1E-37 209.2 11.1 136 12-153 35-185 (228)
20 3rqw_A ELIC pentameric ligand 100.0 1.6E-29 5.6E-34 202.0 12.5 138 7-153 4-162 (322)
21 3sq6_A ACHBP, neuronal acetylc 49.5 15 0.00052 26.4 3.5 27 6-33 12-38 (204)
22 2qc1_B Acetylcholine receptor 41.3 19 0.00066 25.9 3.0 28 6-33 14-41 (212)
23 4aoe_A Acetylcholine-binding p 35.0 32 0.0011 24.8 3.3 27 7-34 15-41 (205)
24 1uw6_A Acetylcholine-binding p 33.6 33 0.0011 24.6 3.2 26 7-33 14-39 (211)
25 4aod_A Acetylcholine-binding p 32.3 38 0.0013 24.3 3.3 28 6-34 14-41 (205)
26 2bg9_C Acetylcholine receptor 27.9 34 0.0012 26.9 2.6 15 107-121 143-157 (369)
27 4afh_A ACHBP; acetylcholine-bi 20.7 32 0.0011 25.3 1.0 27 7-33 16-45 (230)
No 1
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=100.00 E-value=1.6e-37 Score=234.24 Aligned_cols=148 Identities=20% Similarity=0.372 Sum_probs=124.1
Q ss_pred CCCCCCCCCCCCeEEeeecEEEEEe---ee-eE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccceecC
Q psy14129 3 NAHTRTLSSLHPVHRCTQTSLHSIE---KK-VD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSA 75 (160)
Q Consensus 3 ~~~~r~~~~~rPv~~~~~~~~~~i~---~~-~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n~~ 75 (160)
|...||.....||.|..++.+.+|. ++ +. .++++|+|+|+||+||| +|+|++.+.++.++||+||++++|++
T Consensus 17 n~~~rPv~~~~pv~V~~~l~l~~i~~vde~~q~~~~~~wl~~~W~D~rL~W~~-~~~~i~~i~v~~~~IW~PDi~l~N~~ 95 (205)
T 4aoe_A 17 NPNNIPIVDEQPVKVSFKYSLQDIYTADVGTDQVELGLWLVISWKDRSLSWSN-ECTTFNELTLPSKYIWLPHIEVYNSI 95 (205)
T ss_dssp CCSSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSC-CCSCCCEEEEEGGGSCCCCCEETTBS
T ss_pred CCCCCCCCCCccEEEEEEEEEEEeeeEcccCCEEEEEEEEEEEEECCccccCC-cCCCccEEEeCHHHhccccEEEeccc
Confidence 5667777777788888888877762 11 11 22489999999999997 79999999999999999999999987
Q ss_pred CCCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECC----CCCCCcccc
Q psy14129 76 GGNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACP----SRSMPLIRW 151 (160)
Q Consensus 76 ~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~----~~~~~~~ew 151 (160)
+ .........++|+++|+|.|.++++++++|+|+ ..||||+|+|.|+||||+|++.+|.|...+ +...+++||
T Consensus 96 ~--~~~~~~~~~v~v~~~G~V~~~~~~~~~s~C~~d-~~fPfD~Q~C~l~fgSw~y~~~~l~l~~~~~~dl~~~~~n~EW 172 (205)
T 4aoe_A 96 G--KPGIHSDQLVRVYKDGTVTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPWTYDVRDLVLDESQQVDLTTYAGGERF 172 (205)
T ss_dssp S--CCEECSCCEEEEETTSEEEECCEEEEEEECCCT-TSSSSSCEEEEEEEECSSCCTTTEEEECSSSCBCTTSCTTCSE
T ss_pred c--ccccccceEEEEeCCcEEEEeCcEEEEEecccC-cCCCccCCeEEEEEECccCChheEEEecCcccchhccccCCcE
Confidence 6 233445788999999999999999999999999 789999999999999999999999998664 344668999
Q ss_pred ccc
Q psy14129 152 ARR 154 (160)
Q Consensus 152 ~~~ 154 (160)
...
T Consensus 173 ~l~ 175 (205)
T 4aoe_A 173 QLI 175 (205)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 2
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=100.00 E-value=2.2e-37 Score=234.67 Aligned_cols=148 Identities=27% Similarity=0.570 Sum_probs=119.9
Q ss_pred CCCCCCC-CCCeEEeeecEEEEE---ee-eeE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccceecCC
Q psy14129 5 HTRTLSS-LHPVHRCTQTSLHSI---EK-KVD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAG 76 (160)
Q Consensus 5 ~~r~~~~-~rPv~~~~~~~~~~i---~~-~~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n~~~ 76 (160)
..||..+ ..|+.|..++.+.+| ++ .++ .++++|.|+|+||+|||++|+|++.+.++.++||+||++++|+++
T Consensus 19 ~~RP~~~~~~pv~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~~~~~iW~PDi~~~N~~~ 98 (212)
T 2qc1_B 19 VVRPVEDHREIVQVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVLYNNAD 98 (212)
T ss_dssp SSCSCSSTTSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCGGGGTTCCEEEECGGGSCCCCEEECCBTT
T ss_pred CCCCccCCCCcEEEEEEEEEecccccccCCcEEEEEEEEeeEEECCCcccChhhcCCeeEEEcchhhccCCceecccccc
Confidence 3444333 445666666666554 11 111 123899999999999999999999999999999999999999988
Q ss_pred CCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECCC-----CCCCcccc
Q psy14129 77 GNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACPS-----RSMPLIRW 151 (160)
Q Consensus 77 ~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~~-----~~~~~~ew 151 (160)
..+.......++|+++|+|.|..++++++.|+|++++||||+|+|+|+|+||+|++.+|+|.+... ....++||
T Consensus 99 -~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew 177 (212)
T 2qc1_B 99 -GDFAIVKFTKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPESDQPDLSNFMESGEW 177 (212)
T ss_dssp -TSSCEECCCCEEEETTCEEEECCEEEEEEEEEECCSSSSCCEEEEEEEEEESSCCTTTEEEEESCSSCBCTTCCCCSSE
T ss_pred -ccccccceeeEEEECCeeEEEEeeeEEEEEccceeecCCCCceEEeEEEEcccccCceEEEEecccccchhhCccCCCE
Confidence 434333347899999999999999999999999999999999999999999999999999998742 33568888
Q ss_pred cc
Q psy14129 152 AR 153 (160)
Q Consensus 152 ~~ 153 (160)
..
T Consensus 178 ~l 179 (212)
T 2qc1_B 178 VI 179 (212)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 3
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=100.00 E-value=3.6e-37 Score=232.49 Aligned_cols=148 Identities=21% Similarity=0.371 Sum_probs=124.9
Q ss_pred CCCCCCCCCCCCeEEeeecEEEEEe---ee-eE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccceecC
Q psy14129 3 NAHTRTLSSLHPVHRCTQTSLHSIE---KK-VD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSA 75 (160)
Q Consensus 3 ~~~~r~~~~~rPv~~~~~~~~~~i~---~~-~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n~~ 75 (160)
|...||.....||.|..++.+.+|. ++ +. .++++|+|+|+||+|++ +|+||+.+.++.++||+||++++|++
T Consensus 17 ~~~~rPv~~~~pv~V~~~l~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~W~~-~~~~i~~i~v~~~~IW~PDi~l~N~~ 95 (205)
T 4aod_A 17 SPLNIPIEDDQPVKVSFEYSLQKIFRADVENDEVDIGLWTTLVWKDRCLNWFN-EFTSFKELTVPIAEIWTPDIFIFDSV 95 (205)
T ss_dssp CSSSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSC-CCSCCCEEEEEGGGSCCCCEEETTBS
T ss_pred CCcCCCCCCCccEEEEEEEEeeeeeeecccCCEEEEEEEEEEEEECCceeeCC-cCCCccEeeccHHhcCcCCEEEEccc
Confidence 4566777777888888888877762 11 11 22489999999999997 79999999999999999999999998
Q ss_pred CCCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECCC----CCCCcccc
Q psy14129 76 GGNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACPS----RSMPLIRW 151 (160)
Q Consensus 76 ~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~~----~~~~~~ew 151 (160)
+ .........++|+++|+|.|.++++++++|+|++..|||| |+|.|+||||+|++.+|+|.+... ...+++||
T Consensus 96 ~--~~~~~~~~~~~v~~~G~V~~~~~~~~~s~C~~d~~~fPfD-Q~C~l~fgSw~y~~~~i~l~~~~~~dl~~~~~n~EW 172 (205)
T 4aod_A 96 G--APEIFSDKLARVSQDGTVTYVPQLKVRLSCPLADLKLETG-VTCSLKSGSWTHSTQELTLEVNAKVDLGDYASDTRF 172 (205)
T ss_dssp S--CCEECSCCEEEEETTSEEEECCEEEEEEECCCTTSSSSSC-EEEEEEEEESSCCTTTEEEECSSSCBCTTSCTTCSS
T ss_pred c--cceeecceEEEEecCCEEEEeccEEEEEEecCccccCCCC-cEEEEEEECccccccEEEEEECCCcccccccccCCE
Confidence 6 2344567789999999999999999999999999999999 999999999999999999998653 44678999
Q ss_pred ccc
Q psy14129 152 ARR 154 (160)
Q Consensus 152 ~~~ 154 (160)
...
T Consensus 173 ~l~ 175 (205)
T 4aod_A 173 QLL 175 (205)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 4
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=100.00 E-value=8.4e-37 Score=230.34 Aligned_cols=147 Identities=22% Similarity=0.402 Sum_probs=116.8
Q ss_pred CCCCCCCCCCeEEeeecEEEEE---eee-eE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccceecCCC
Q psy14129 5 HTRTLSSLHPVHRCTQTSLHSI---EKK-VD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGG 77 (160)
Q Consensus 5 ~~r~~~~~rPv~~~~~~~~~~i---~~~-~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~ 77 (160)
..||..+..|+.|..++++.+| +++ ++ .++++|.|+|+||+|||++|+|++.+.++.++||+||++++|+++.
T Consensus 17 ~~RP~~~~~~v~V~~~~~l~~i~~v~e~~~~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~~~~~iW~PDi~~~N~~~~ 96 (204)
T 3sq6_A 17 DVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISK 96 (204)
T ss_dssp TSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTSSSCCEEEEEGGGSCCCCEEETTBSSC
T ss_pred CCCCCCCCCcEEEEEEEEhhheeehhccccEEEEEEeeeeEEECCCcccChHHcCCccEEEcCHHHCcCCCEEeEccccc
Confidence 3444444455566666665554 111 11 1238999999999999999999999999999999999999999872
Q ss_pred CCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECC---CCCCCccccccc
Q psy14129 78 NDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACP---SRSMPLIRWARR 154 (160)
Q Consensus 78 ~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~---~~~~~~~ew~~~ 154 (160)
..... ...++|+++|+|.|.+++++++.|+|++ +||||+|+|+|+|+||+|++.+|+|.+.. ...++++||...
T Consensus 97 ~~~~~--~~~v~v~~~G~V~~~~~~~~~~~C~mdl-~fPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~eW~l~ 173 (204)
T 3sq6_A 97 PEVLT--PQLALVNSSGHVQYLPSIRQRFSCDVSG-VDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELV 173 (204)
T ss_dssp CEECS--CCEEEEETTSEEEECCEEEEEEECCCGG-GSSSSCEEEEEEEEESSCCTTTEEEECCCCCCTTSCSSSSEEEE
T ss_pred CCccc--ccEEEEEeCCEEEEecCeeEEEeccccc-cCCCCCcEEEEEEEeecccCeEEEEEeccCCHHHcccCCCEEEE
Confidence 11111 1299999999999999999999999999 99999999999999999999999999754 345679999543
No 5
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=100.00 E-value=2.3e-36 Score=227.45 Aligned_cols=146 Identities=19% Similarity=0.215 Sum_probs=120.8
Q ss_pred CCCCCCCCCCCeEEeeecEEEEEe----eeeE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccceecCC
Q psy14129 4 AHTRTLSSLHPVHRCTQTSLHSIE----KKVD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAG 76 (160)
Q Consensus 4 ~~~r~~~~~rPv~~~~~~~~~~i~----~~~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n~~~ 76 (160)
+..||..+..|+.|..++++.+|. ..++ .++++|.|+|+||+|||++ +|++.+.++.++||+||++++|+++
T Consensus 5 ~~~RP~~~~~pv~V~~~l~l~~i~~vdE~~~~~t~~~~l~~~W~D~rL~w~~~~-~~i~~~~~~~~~IW~PDi~l~N~~~ 83 (201)
T 3igq_A 5 VSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVEN 83 (201)
T ss_dssp CSCCCCBTTBCEEEEEEEEEEEEECCCTTSSEEEEEEEEEEEEECGGGCCCHHH-HTCSCEECCGGGSCCCCEEESSBSS
T ss_pred cccCCCCCCCCEEEEEEEEeeecccCcccCCEEEEEEEEeeEEECCccCCCCcC-CCEeEecccccCcCccCEEEEcccc
Confidence 467888889999999999998872 1111 1238999999999999998 6899999999999999999999966
Q ss_pred CCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECC-----CCCCCcccc
Q psy14129 77 GNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACP-----SRSMPLIRW 151 (160)
Q Consensus 77 ~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~-----~~~~~~~ew 151 (160)
.....+..++|+++|+|.|..++++++.|+|++++||||+|+|+|+|+||+|++.+|+|.+.. +..++++||
T Consensus 84 ---~~~~~~~~v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew 160 (201)
T 3igq_A 84 ---ARDADVVDISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGW 160 (201)
T ss_dssp ---SCEEEEEEEEECTTCEEEEEEEEEEEEECCCC------CEEEEEEEEEECCCSSCCEEEEECGGGCEESCSEEETTE
T ss_pred ---cccccceEEEEeCCCcEEEecceeEEEecCcccccCCCCccEeeEEEeccCCCceEEEEEecCCccccccCcccCCe
Confidence 234568899999999999999999999999999999999999999999999999999999864 345678899
Q ss_pred cc
Q psy14129 152 AR 153 (160)
Q Consensus 152 ~~ 153 (160)
..
T Consensus 161 ~l 162 (201)
T 3igq_A 161 DI 162 (201)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 6
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=1.1e-34 Score=236.08 Aligned_cols=150 Identities=23% Similarity=0.485 Sum_probs=121.0
Q ss_pred CCCCCCCC-CCCeEEeeecEEEEE---ee-eeE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccceecC
Q psy14129 4 AHTRTLSS-LHPVHRCTQTSLHSI---EK-KVD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSA 75 (160)
Q Consensus 4 ~~~r~~~~-~rPv~~~~~~~~~~i---~~-~~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n~~ 75 (160)
+..||..+ ..|+.|..++.+.+| ++ +++ .++++|+|+|+||+|||++|+|++.+.++.++||+||++++|++
T Consensus 17 ~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~N~~ 96 (370)
T 2bg9_B 17 PKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMNNN 96 (370)
T ss_dssp TTCCSSCSSSSCCEEEEECCEEEEEEEETTTTEEEEEEECEEEEECTTSCCCTTTTSSCSEEEEESSSSCCCCEEESSCC
T ss_pred CCCCCCCCCCCCEEEEEEEEehhhhhhhccccceEEEEEEeeeeECcccCcCccccCCeeEEEechhhccCCCccccccc
Confidence 44455443 456667777766655 21 111 12389999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEE-CC-----CCCCCcc
Q psy14129 76 GGNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLA-CP-----SRSMPLI 149 (160)
Q Consensus 76 ~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~-~~-----~~~~~~~ 149 (160)
+ +.+.......+.|++||+|.|..+++.++.|+|++++||||+|+|+++|+||+|+++++++.+ .. +....++
T Consensus 97 ~-~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~~~~~ 175 (370)
T 2bg9_B 97 D-GSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAMINQDAFTENG 175 (370)
T ss_dssp C-SCEESSSSCEEEEETTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEEEESSCCBTSCEEECSCCCCCSTTSCCTTC
T ss_pred c-ccccccccceEEEeCCceEEEEecceEEEEccCcccCCCCCceeeeEEEEeccccccEEEEEeccCCccccccccccc
Confidence 7 444444456789999999999999999999999999999999999999999999999999998 32 2234578
Q ss_pred ccccc
Q psy14129 150 RWARR 154 (160)
Q Consensus 150 ew~~~ 154 (160)
||...
T Consensus 176 eW~l~ 180 (370)
T 2bg9_B 176 QWSIE 180 (370)
T ss_dssp SSEEC
T ss_pred eEEEe
Confidence 88543
No 7
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=3e-35 Score=239.30 Aligned_cols=148 Identities=31% Similarity=0.615 Sum_probs=118.7
Q ss_pred CCCCCCC-CCCeEEeeecEEEEE---ee-eeE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccceecCC
Q psy14129 5 HTRTLSS-LHPVHRCTQTSLHSI---EK-KVD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAG 76 (160)
Q Consensus 5 ~~r~~~~-~rPv~~~~~~~~~~i---~~-~~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n~~~ 76 (160)
..||..+ ..|+.|..++.+.+| ++ +++ .++++|+|+|+||+|||++|+|++.+.++.++||+||++++|+++
T Consensus 18 ~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v~~~~IW~PDi~~~N~~~ 97 (370)
T 2bg9_A 18 VIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNAD 97 (370)
T ss_dssp TCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTTHHHHSSEEEEGGGSCCCCEEETTCCC
T ss_pred CCCCCCCCCCCEEEEEEEEehHhhcchhhccceEEEEEEeeeeECCCccCChhhcCCccEEEechhhccCCcEecccccc
Confidence 3444332 445566666665554 11 111 123899999999999999999999999999999999999999987
Q ss_pred CCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECCC-----CCCCcccc
Q psy14129 77 GNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACPS-----RSMPLIRW 151 (160)
Q Consensus 77 ~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~~-----~~~~~~ew 151 (160)
..+.......++|++||+|.|..++++++.|+|++++||||+|+|+++|+||+|+++++++.+... ....++||
T Consensus 98 -~~~~~~~~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew 176 (370)
T 2bg9_A 98 -GDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDLSTFMESGEW 176 (370)
T ss_dssp -SCEESCSSCEEEECSSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEEEESSCCTTTEEEECCCCCCSTTSCCTTCSS
T ss_pred -ccccccccceEEEECCeeEEEecceEEEEECCCCcCCCCCCcceeeEEEEEecccCcEEEEEecCCCcccccccccceE
Confidence 444444467899999999999999999999999999999999999999999999999999997642 23457888
Q ss_pred cc
Q psy14129 152 AR 153 (160)
Q Consensus 152 ~~ 153 (160)
..
T Consensus 177 ~l 178 (370)
T 2bg9_A 177 VM 178 (370)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 8
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=1.6e-34 Score=235.06 Aligned_cols=146 Identities=23% Similarity=0.502 Sum_probs=118.4
Q ss_pred CCCCCCCC-------eEEeeecEEEEE---ee-eeE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccce
Q psy14129 7 RTLSSLHP-------VHRCTQTSLHSI---EK-KVD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTF 72 (160)
Q Consensus 7 r~~~~~rP-------v~~~~~~~~~~i---~~-~~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~ 72 (160)
.|++..|| +.|..++.+.+| ++ +++ .++++|+|+|+||+|||++|+|++.+.++.++||+||++++
T Consensus 16 ~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~ 95 (369)
T 2bg9_C 16 KYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQ 95 (369)
T ss_dssp TSCSSSCCSSSSSSCCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTTCCCCCCCCTCSCEEECGGGSCCCCEEET
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEehhhccccccccceEEEEEEeeeeECCCcccCccccCCeeEEEecHHhccCCcEecc
Confidence 45555555 555666655554 11 111 12389999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECC--CCCCCccc
Q psy14129 73 NSAGGNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACP--SRSMPLIR 150 (160)
Q Consensus 73 n~~~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~--~~~~~~~e 150 (160)
|+++ +.+.......+.|++||+|.|..+++.++.|+|++++||||+|+|+++|+||+|+++++++.+.. +....++|
T Consensus 96 N~~~-~~~~~~~~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~e 174 (369)
T 2bg9_C 96 NNND-GQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLIIDPEAFTENGE 174 (369)
T ss_dssp TTCS-SCCBSSSSCCEEECSSSEEEECCEEEEEECCSCGGGSSSTTCCEEEEEEEESSCCTTTCEEECCCGGGSCCTTSS
T ss_pred cccc-ccccccccccEEEECCccEEEecCEEEEEECcCcccCCCCCceEeeEEEEEecccCceEEEEEecccccceeCCE
Confidence 9988 44444445678999999999999999999999999999999999999999999999999999832 23356788
Q ss_pred ccc
Q psy14129 151 WAR 153 (160)
Q Consensus 151 w~~ 153 (160)
|..
T Consensus 175 w~l 177 (369)
T 2bg9_C 175 WEI 177 (369)
T ss_dssp EEE
T ss_pred EEE
Confidence 853
No 9
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=100.00 E-value=5.7e-35 Score=243.51 Aligned_cols=148 Identities=31% Similarity=0.615 Sum_probs=118.6
Q ss_pred CCCCCCC-CCCeEEeeecEEEEE---ee-eeE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccceecCC
Q psy14129 5 HTRTLSS-LHPVHRCTQTSLHSI---EK-KVD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAG 76 (160)
Q Consensus 5 ~~r~~~~-~rPv~~~~~~~~~~i---~~-~~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n~~~ 76 (160)
..||..+ ..|+.|..++++.+| ++ +++ .++++|+|+|+||+|||++|+|++.+.++.++||+||++++|+++
T Consensus 42 ~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t~~~~l~~~W~D~rL~Wnp~~y~gi~~l~vp~~~IW~PDi~l~N~~d 121 (461)
T 4aq5_A 42 VIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNAD 121 (461)
T ss_dssp SCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTCBCCTTTHHHHSSEEEEGGGSCCCCEEESSCCC
T ss_pred CCCCCCCCCCcEEEEEEEEEeeehhhhccceEEEEEEEEeeeeECcccCCChhhcCCccEEEecCCCEECCceeeecccc
Confidence 3344332 344556666655444 21 111 123899999999999999999999999999999999999999988
Q ss_pred CCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECCC-----CCCCcccc
Q psy14129 77 GNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACPS-----RSMPLIRW 151 (160)
Q Consensus 77 ~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~~-----~~~~~~ew 151 (160)
+.+.......++|++||+|.|.++++.++.|+|++++||||+|+|+++|+||+|+++++++.+... ...+++||
T Consensus 122 -~~~~~~~~~~v~v~~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~l~~~~~~~eW 200 (461)
T 4aq5_A 122 -GDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDLSTFMESGEW 200 (461)
T ss_dssp -SCCTTCSSCEEEECSBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESSCCTTTEEEECCCCCCSGGGCCTTCSS
T ss_pred -cccccccccceEEcCCccEEEeccccccccccccccCCCCccCccCeEEeccccCCceEEEEeccccccHHhhhccCce
Confidence 444444567899999999999999999999999999999999999999999999999999997643 22457888
Q ss_pred cc
Q psy14129 152 AR 153 (160)
Q Consensus 152 ~~ 153 (160)
..
T Consensus 201 ~l 202 (461)
T 4aq5_A 201 VM 202 (461)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 10
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=9.5e-35 Score=236.41 Aligned_cols=150 Identities=19% Similarity=0.444 Sum_probs=122.0
Q ss_pred CCCCCCCCC-CCCeEEeeecEEEEE---ee-eeE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccceec
Q psy14129 3 NAHTRTLSS-LHPVHRCTQTSLHSI---EK-KVD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNS 74 (160)
Q Consensus 3 ~~~~r~~~~-~rPv~~~~~~~~~~i---~~-~~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n~ 74 (160)
|+..||..+ ..|+.|..++.+.+| ++ +++ .++++|+|+|+||+|||++|+|++.+.++.++||+||++++|+
T Consensus 15 d~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~N~ 94 (370)
T 2bg9_E 15 DKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLENN 94 (370)
T ss_dssp CSSSCCCSSSSSCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTTTTCSCBCCCGGGSCCCCEEESSS
T ss_pred CCCCCCCCCCCCCEEEEEEEEehhhhchhhcccceeEeEEEeeEEECCCcCCChhhcCCeeEEeechhccCCCCEeeccc
Confidence 344555543 556777777777665 21 111 1238999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECCC------CCCCc
Q psy14129 75 AGGNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACPS------RSMPL 148 (160)
Q Consensus 75 ~~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~~------~~~~~ 148 (160)
++ +.+.......+.|++||+|.|..++++++.|+|++++||||+|+|+++|+||+|+++++++.+... ....+
T Consensus 95 ~~-~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~~~~ 173 (370)
T 2bg9_E 95 VD-GQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGIDPEDFTEN 173 (370)
T ss_dssp CC-SCCBSSSSCCCEECSSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEEESSSCTTSCCEECCCSCCCGGGSCCTT
T ss_pred cC-CcccccccccEEEECCccEEEecCEEEEEECcccccCCCCCeEEEEEEEEeeccccceeEEEecCCCcccHhhcccc
Confidence 88 444444456778999999999999999999999999999999999999999999999999998754 12457
Q ss_pred ccccc
Q psy14129 149 IRWAR 153 (160)
Q Consensus 149 ~ew~~ 153 (160)
+||..
T Consensus 174 ~eW~l 178 (370)
T 2bg9_E 174 GEWTI 178 (370)
T ss_dssp SSEEE
T ss_pred cEEEE
Confidence 88854
No 11
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=100.00 E-value=4.7e-34 Score=228.23 Aligned_cols=147 Identities=20% Similarity=0.297 Sum_probs=126.2
Q ss_pred CCCCCCCCCCCeEEeeecEEEEE---eee-eE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccceecCC
Q psy14129 4 AHTRTLSSLHPVHRCTQTSLHSI---EKK-VD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAG 76 (160)
Q Consensus 4 ~~~r~~~~~rPv~~~~~~~~~~i---~~~-~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n~~~ 76 (160)
...||..++.|+.|..++.+.+| +++ ++ ..+++|+|+|+||+|||++|+ ++.+.++.++||+||++++|+++
T Consensus 9 ~~~RP~~~~~~v~V~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~~~~~~-i~~~~~~~~~IW~PDi~l~N~~~ 87 (321)
T 3tlw_A 9 VSPPPPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVNVEN 87 (321)
T ss_dssp CCCCCCSSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCSTTTC-CSSEECCGGGSCCCCEEESSBSS
T ss_pred CccCCCCCCCCEEEEEEEEEEeecceeccCcEEEEEEEEeeEEECcccCCCCccCC-eeeecccccCeEcCcEEeecccc
Confidence 35678788888999999988776 211 11 123899999999999999998 99999999999999999999988
Q ss_pred CCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECC-----CCCCCcccc
Q psy14129 77 GNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACP-----SRSMPLIRW 151 (160)
Q Consensus 77 ~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~-----~~~~~~~ew 151 (160)
+. ...+..++|++||+|.|..+++.++.|+|++++||||+|+|+++|+||+|+++++++.+.. +....+.||
T Consensus 88 ~~---~~~~~~~~v~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew 164 (321)
T 3tlw_A 88 AR---DADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGW 164 (321)
T ss_dssp CC---EEEEEEEEECTTCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSCCEEEEECGGGCEECTTCCBTTE
T ss_pred cc---cccceeEEEeCCccEEEecceEEEEEEEeecccCCCCceeEeEEEecccCChhhEEEEEcCCcccccccccccce
Confidence 33 6678899999999999999999999999999999999999999999999999999999874 234568888
Q ss_pred ccc
Q psy14129 152 ARR 154 (160)
Q Consensus 152 ~~~ 154 (160)
...
T Consensus 165 ~l~ 167 (321)
T 3tlw_A 165 DIE 167 (321)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 12
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=100.00 E-value=3.8e-34 Score=230.95 Aligned_cols=139 Identities=22% Similarity=0.358 Sum_probs=111.2
Q ss_pred CCCCCCC-CCCeEEeeecEEEEE---ee-eeE---EEEEEeEEecCCcccCCCCCCCeeEEEe-CCCCcccCCccceecC
Q psy14129 5 HTRTLSS-LHPVHRCTQTSLHSI---EK-KVD---QTLNFKKWYDPVLQWDPKKYGDIKQIYL-APQEVWQPDLSTFNSA 75 (160)
Q Consensus 5 ~~r~~~~-~rPv~~~~~~~~~~i---~~-~~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~-~~~~iW~Pdi~~~n~~ 75 (160)
..||..+ +.|+.|..++.+.+| ++ +++ .++++|+|+|+||+|||++|++++.+.+ +.++||+||++++|++
T Consensus 17 ~~RP~~~~~~~v~V~~~l~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~~~~~IW~PDi~l~N~~ 96 (347)
T 3rhw_A 17 RVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEK 96 (347)
T ss_dssp TSCCCCSSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECCTTCCCCCCCEECTTEE
T ss_pred CCCCCCCCCCcEEEEEEEEEEeeccccccceeEEEEEEEeeEEECcccCCCCccCCCceEEEecchhceecCCEeeeccc
Confidence 3444433 245556666655554 11 111 1238999999999999999999999886 7799999999999998
Q ss_pred CCC-CCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECCC
Q psy14129 76 GGN-DVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACPS 143 (160)
Q Consensus 76 ~~~-~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~~ 143 (160)
++. ......+..++|++||+|.|.++++.++.|+|++++||||+|+|+++|+||+|+++++++.+..+
T Consensus 97 ~~~~~~~~~~n~~v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~ 165 (347)
T 3rhw_A 97 QAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEH 165 (347)
T ss_dssp EEEECCSSSCSEEEEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEECSS
T ss_pred cccccccccccEEEEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEecCC
Confidence 732 22345567889999999999999999999999999999999999999999999999999998654
No 13
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=100.00 E-value=1.5e-34 Score=244.06 Aligned_cols=136 Identities=24% Similarity=0.544 Sum_probs=112.4
Q ss_pred CCCCCCCCCeE-------EeeecEEEEE---eee-eE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccc
Q psy14129 6 TRTLSSLHPVH-------RCTQTSLHSI---EKK-VD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLST 71 (160)
Q Consensus 6 ~r~~~~~rPv~-------~~~~~~~~~i---~~~-~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~ 71 (160)
..|++..||+. |..++++.+| +++ ++ .++++|+|+|+||+|||++|+|++.+.++.++||+||+++
T Consensus 36 ~~Yd~~~RPv~~~~~pv~V~v~l~l~~I~~VdE~~q~~t~~vwl~q~W~D~RL~Wnp~~y~gi~~l~vp~~~IW~PDi~l 115 (522)
T 4aq5_C 36 NKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVL 115 (522)
T ss_dssp TTSCSSSCCSSSSSSCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCCCCCCTCSCEEECGGGSCCCCEEE
T ss_pred cCCCCCCCCCCCCCCcEEEEEEEEeeecccccccccEEEEEEEEeeeEeCcccCCCchhcCCceEEeeccCCEECCcEec
Confidence 46777777754 4455544444 211 11 1238999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECC
Q psy14129 72 FNSAGGNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACP 142 (160)
Q Consensus 72 ~n~~~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~ 142 (160)
+|+++ +.+.......+.|++||+|.|..++++++.|+|++++||||+|+|+++|+||+|+++++++.+..
T Consensus 116 ~N~~d-~~~~~~~~~nv~V~~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~Y~~~~v~l~~~~ 185 (522)
T 4aq5_C 116 QNNND-GQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMT 185 (522)
T ss_dssp TTTCS-SCCBSCSSCCEEECSSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETTCCTTTCCEEC--
T ss_pred ccccc-CCccccccceEEEeCCccEEEEcccccccccccccCcCCCcCceEeEEEecccccCceeEEEecc
Confidence 99988 44444455678899999999999999999999999999999999999999999999999998764
No 14
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=100.00 E-value=5.8e-34 Score=218.33 Aligned_cols=139 Identities=27% Similarity=0.506 Sum_probs=115.5
Q ss_pred CCCC-CCCeEEeeecEEEEE---eee-----eEE---EEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccceecC
Q psy14129 8 TLSS-LHPVHRCTQTSLHSI---EKK-----VDQ---TLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSA 75 (160)
Q Consensus 8 ~~~~-~rPv~~~~~~~~~~i---~~~-----~~~---~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n~~ 75 (160)
|... ..||.|..++++.+| +++ ++. ++++|+|+|+||+|||++|+|++.+.++.++||+||++++|++
T Consensus 26 P~~~~~~pv~V~~~l~l~~i~~v~E~~~~~~~~~t~~~~l~~~W~D~rL~wnp~~~~~i~~i~l~~~~IW~PDi~l~N~~ 105 (230)
T 4afh_A 26 PFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSV 105 (230)
T ss_dssp SCSSBCCCEEEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECGGGCCCCCTTSCCSEEEECGGGSCCCCEEETTCS
T ss_pred CCCCCCCCEEEEEEEEHhHhhhhhhcccccCcEEEEEEEEeeEEECccccCCcccCCCeeEEEeccCCEECCcEEEEecc
Confidence 6654 668888888877655 433 222 2389999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECCC------CCCCcc
Q psy14129 76 GGNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACPS------RSMPLI 149 (160)
Q Consensus 76 ~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~~------~~~~~~ 149 (160)
+ +.+.......++|+++|+|.|.+++++++.|+| |||+|+|+|+|+||+|++.+|+|.+... ..++++
T Consensus 106 ~-~~~~~~~~~~v~v~~~G~V~~~~~~~~~s~C~m-----PfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~d~~~~~n~ 179 (230)
T 4afh_A 106 D-LDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVS-----QDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDS 179 (230)
T ss_dssp S-SSCEECTTSCEEEETTSEEEECCEEEEEEEEEE-----ETTEEEEEEEEEESSCCTTTEEEEEGGGCCSCBCTTCCCC
T ss_pred c-ccccccccceEEEEcCCEEEEecCEEEEEECCC-----CCCcccCCEeeccccccCceEEEEECCCCcccceeeecCc
Confidence 8 333333457899999999999999999999999 9999999999999999999999998642 244566
Q ss_pred cccc
Q psy14129 150 RWAR 153 (160)
Q Consensus 150 ew~~ 153 (160)
|..
T Consensus 180 -W~l 182 (230)
T 4afh_A 180 -LEI 182 (230)
T ss_dssp -CCE
T ss_pred -EEE
Confidence 744
No 15
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=100.00 E-value=4.7e-33 Score=209.62 Aligned_cols=143 Identities=20% Similarity=0.379 Sum_probs=121.7
Q ss_pred CCCCCCCCCCCCeEEeeecEEEEEe--------eeeEEEEEEeEEecCCc-ccCCCCCCCeeEEEeCCCCcccCCcccee
Q psy14129 3 NAHTRTLSSLHPVHRCTQTSLHSIE--------KKVDQTLNFKKWYDPVL-QWDPKKYGDIKQIYLAPQEVWQPDLSTFN 73 (160)
Q Consensus 3 ~~~~r~~~~~rPv~~~~~~~~~~i~--------~~~~~~~~~~~W~D~rL-~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n 73 (160)
|+..||..+..|+.|..++.+.+|. ++++ ++++|.|+|+|| +|||++ |++.+.++.++||+||++++|
T Consensus 13 d~~~RP~~~~~p~~V~~~~~l~~i~~v~e~~~~~~~~-~~~~~~W~D~rL~~w~~~~--~i~~~~~~~~~iW~PDi~~~N 89 (203)
T 2bj0_A 13 ESDVIPLSNNTPLNVSLNFKLMNIVEADTEKDQVEVV-LWTQASWKVPYYSSLLSSS--SLDQVSLPVSKMWTPDLSFYN 89 (203)
T ss_dssp TTTSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEE-EEEEEEEECGGGGGGTTTS--SCSEEEEEGGGSCCCCEEETT
T ss_pred CCccCCCCCCCCEEEEEEEEEEeEeeecCCCCEEEEE-EEEEeEEECcchhccCccC--CceEEEEchhhccCCCccccc
Confidence 5667887778889999999887772 1222 238999999999 999998 899999999999999999999
Q ss_pred c-CCCCCCCCCcceEEEEeecCeEEEecCcEEEEEEee-cccCCCCccceEEEEEeccccccCcEEEEECCCC------C
Q psy14129 74 S-AGGNDVSPFGETYHIASSDGLISWVPPCQFQVYCHL-DLTYWPFDSQVCELILGSWVYDGNNIDFLACPSR------S 145 (160)
Q Consensus 74 ~-~~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~-~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~~~------~ 145 (160)
+ ++ +.+... ..++|+++|+|.|.+++++++.|+| ++++ ||+|+|+|+||||+|++.+|+|.+.... .
T Consensus 90 ~~~~-~~~~~~--~~v~i~~~G~V~~~~~~~~~~~C~m~dl~~--fD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~ 164 (203)
T 2bj0_A 90 AIAA-PELLSA--DRVVVSKDGSVIYVPSQRVRFTCDLINVDT--EPGATCRIKVGSWTHDNKQFALITGEEGVVNIAEY 164 (203)
T ss_dssp CSSC-CEECSC--CEEEEETTSEEEECCEEEEEEECCCTTTTS--SSCEEEEEEEEESSCCTTTEEEEECTTTTSCTTTT
T ss_pred cccc-cccccc--eEEEEeCCcEEEEecceEEEEEccccccCc--cccceeeEEEEcccccCcEEEEEecCCCccchhcc
Confidence 9 76 433333 8999999999999999999999999 9998 9999999999999999999999986432 3
Q ss_pred CCcccccc
Q psy14129 146 MPLIRWAR 153 (160)
Q Consensus 146 ~~~~ew~~ 153 (160)
+.++||..
T Consensus 165 ~~~~ew~l 172 (203)
T 2bj0_A 165 FDSPKFDL 172 (203)
T ss_dssp CCCSSEEE
T ss_pred eecCCEEE
Confidence 55888854
No 16
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=100.00 E-value=8.2e-34 Score=238.26 Aligned_cols=138 Identities=26% Similarity=0.541 Sum_probs=114.0
Q ss_pred CCCCCCCCC-CCCeEEeeecEEEEE---eee-eE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccceec
Q psy14129 3 NAHTRTLSS-LHPVHRCTQTSLHSI---EKK-VD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNS 74 (160)
Q Consensus 3 ~~~~r~~~~-~rPv~~~~~~~~~~i---~~~-~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n~ 74 (160)
|+..||... ..|+.|..++++.+| +++ ++ .++++|+|+|+||+|||++|+|++.+.++.++||+||++++|+
T Consensus 40 d~~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~~IW~PDi~l~N~ 119 (493)
T 4aq5_B 40 NPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMNN 119 (493)
T ss_dssp CSSSCSSCSSSSCCEEEEECCEEEEEEEETTTTEEEEEEECEEEEECTTCCCCHHHHSSCSCEEECSCSSCCCCCEESSC
T ss_pred CCCCCCCCCCCCcEEEEEEEEEeeeeeccccceEEEEEEEeecceECcccCCChhhcCCeeEEecccccCccCcEEEecc
Confidence 344455444 456666676666554 211 11 1238999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEEC
Q psy14129 75 AGGNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLAC 141 (160)
Q Consensus 75 ~~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~ 141 (160)
++ +.+.......+.|++||+|.|..+++.++.|+|++++||||+|+|+++|+||+|+++++++.+.
T Consensus 120 ~d-~~~~~~~~~nv~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~ 185 (493)
T 4aq5_B 120 ND-GSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHA 185 (493)
T ss_dssp CC-SCEESSSSSCEEECTTSEEEECCEEEEEECCSCTTCSSSTTCCCCEEEEECSSCCBTSCEEECC
T ss_pred cc-cccccccccceEEecCCCEEEeeeeeeeecccccccCCCccceeEEEEEeeecCccccEEEEec
Confidence 88 4444444567899999999999999999999999999999999999999999999999999984
No 17
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=100.00 E-value=7.3e-34 Score=238.31 Aligned_cols=138 Identities=20% Similarity=0.469 Sum_probs=115.5
Q ss_pred CCCCCCCCC-CCCeEEeeecEEEEEe--------eeeEEEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCcccee
Q psy14129 3 NAHTRTLSS-LHPVHRCTQTSLHSIE--------KKVDQTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFN 73 (160)
Q Consensus 3 ~~~~r~~~~-~rPv~~~~~~~~~~i~--------~~~~~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n 73 (160)
|+..||... ..||.|..++++.+|. .+++ ++++|+|+|+||+|||++|+|++.+.++.++||+||++++|
T Consensus 15 d~~~RP~~~~~~pv~V~v~l~l~~I~~VdE~~q~~t~~-v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~~IW~PDi~l~N 93 (488)
T 4aq5_E 15 DKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTN-VWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLEN 93 (488)
T ss_dssp CSSSCCCSSTTSCCCEEEEEEEEEECCCBTTTTBEEEE-EEEEEEEECCTTCCCTTTTTTCSCCCCCTTSSCCCCEECSS
T ss_pred CCCCCCCCCCCCcEEEEEEEEEeeeeccccccceeeee-eeeeeEEECcccCcCchhcCCceEEecCccCEECCceehhc
Confidence 344555443 4566677777776661 1222 24899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECC
Q psy14129 74 SAGGNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACP 142 (160)
Q Consensus 74 ~~~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~ 142 (160)
+++ +.+.......+.|++||+|.|..++++++.|+|++++||||+|+|+|+|+||+|++++++|.+..
T Consensus 94 ~~d-~~~~~~~~~nv~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~ 161 (488)
T 4aq5_E 94 NVD-GQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSA 161 (488)
T ss_dssp SCC-SCCBSCSSSCCCBCTTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEEESSSCSSSCCEECCC
T ss_pred ccc-ccccccccccEEEeCCceEEEecceeEEeecccccccCCCcCceeeEEeeeeccccceEEEEecc
Confidence 988 44444445667899999999999999999999999999999999999999999999999999874
No 18
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=100.00 E-value=5.1e-32 Score=205.02 Aligned_cols=143 Identities=19% Similarity=0.379 Sum_probs=116.9
Q ss_pred CCCCCCCCCCCCeEEeeecEEEEEe---e-eeE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccceecC
Q psy14129 3 NAHTRTLSSLHPVHRCTQTSLHSIE---K-KVD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSA 75 (160)
Q Consensus 3 ~~~~r~~~~~rPv~~~~~~~~~~i~---~-~~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n~~ 75 (160)
|+..||.....|+.|..++.+.+|. + .++ .++++|.|+|+||+|||++|+| .+.++.++||+||++++|++
T Consensus 16 d~~~RP~~~~~~~~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~--~l~~~~~~iW~PDi~~~N~~ 93 (211)
T 1uw6_A 16 RPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPD--QVSVPISSLWVPDLAAYNAI 93 (211)
T ss_dssp CTTSCCCCTTCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCS--EEEEEGGGSCCCCEEETTBC
T ss_pred CCcCCCCCCCCcEEEEEEEEHHHhhchhhhCcEEEEEEEEEeEeECcccccChhhcCC--eEEccHHHccCCCEeeeccc
Confidence 3445665555667777777776652 1 111 1238999999999999999999 88999999999999999998
Q ss_pred CCCCCCCCcceEEEEeecCeEEEecCcEEEEEEe---ecccCCCCccceEEEEEeccccccCcEEEEECC-----CCCCC
Q psy14129 76 GGNDVSPFGETYHIASSDGLISWVPPCQFQVYCH---LDLTYWPFDSQVCELILGSWVYDGNNIDFLACP-----SRSMP 147 (160)
Q Consensus 76 ~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~---~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~-----~~~~~ 147 (160)
++. .......++|+++|+|.|.+++++++.|+ |+++ |+|+|+|+|+||+|++.+|+|.+.. ...+.
T Consensus 94 ~~~--~~~~~~~~~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~~ 167 (211)
T 1uw6_A 94 SKP--EVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTE----SGATCRIKIGSWTHHSREISVDPTTENSDDSEYFS 167 (211)
T ss_dssp SCC--EECSCCEEEEETTSEEEECCEEEEEEECCCTTTTSS----SCEEEEEEEEESSCCTTTEEEEECCCSSCTTTTSC
T ss_pred ccc--ccceeeEEEEeCCceEEEeCCEEEEEECCCCCCCCC----cceEeEEEEEcccccCceEEEEecccccchhhhcc
Confidence 844 33344899999999999999999999999 9999 9999999999999999999999864 23456
Q ss_pred -cccccc
Q psy14129 148 -LIRWAR 153 (160)
Q Consensus 148 -~~ew~~ 153 (160)
++||..
T Consensus 168 ~~~ew~l 174 (211)
T 1uw6_A 168 QYSRFEI 174 (211)
T ss_dssp TTSSEEE
T ss_pred cCCCEEE
Confidence 888954
No 19
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=99.98 E-value=2.4e-32 Score=209.16 Aligned_cols=136 Identities=22% Similarity=0.508 Sum_probs=114.9
Q ss_pred CCCeEEeeecEEEEEe---e-eeE---EEEEEeEEecCCcccCCCCCCCeeEEEeCCCCcccCCccceecCCCCCCCCCc
Q psy14129 12 LHPVHRCTQTSLHSIE---K-KVD---QTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFG 84 (160)
Q Consensus 12 ~rPv~~~~~~~~~~i~---~-~~~---~~~~~~~W~D~rL~wn~~~~~~i~~i~~~~~~iW~Pdi~~~n~~~~~~~~~~~ 84 (160)
..|+.|..++.+.+|. + .++ .++++|+|+|+||+|||++|+|++.+.++.++||+||++++|+++ +.+...
T Consensus 35 ~~pv~V~~~~~l~~i~~v~e~~~~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~~~~~~IW~PDi~l~N~~~-~~~~~~- 112 (228)
T 2wn9_A 35 DDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTR-PVQVLS- 112 (228)
T ss_dssp TBCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECCGGGGTTCCEEEEEGGGSCCCCEEESSBSS-CCEECS-
T ss_pred CCCEEEEEEEEhhHhhhhhccccEEEEEEEEEEEEECCCccCCchhcCCeeEEEecHHHccCCceecccccc-cccccc-
Confidence 5577788887776651 1 111 123899999999999999999999999999999999999999988 434334
Q ss_pred ceEEEEeecCeEEEecCcEEEEEEe---ecccCCCCccceEEEEEeccccccCcEEEEECC-----CCCCCcccccc
Q psy14129 85 ETYHIASSDGLISWVPPCQFQVYCH---LDLTYWPFDSQVCELILGSWVYDGNNIDFLACP-----SRSMPLIRWAR 153 (160)
Q Consensus 85 ~~~v~v~~~G~V~~~~~~~~~~~C~---~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~-----~~~~~~~ew~~ 153 (160)
+..++|+++|+|.|.++++++++|+ |+++ |+|+|+|+||||+|++.+|.|.+.. ....+++||..
T Consensus 113 ~~~v~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~Sw~y~~~~i~l~~~~~~~~~~~~~~~~ew~l 185 (228)
T 2wn9_A 113 PQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEI 185 (228)
T ss_dssp CCEEEEETEEEEEECCEEEEEEECCCTTTTST----TCEEEEEEEEESSCCTTTEEEECSCSBCBCTTCCTTCSEEE
T ss_pred cceEEEeCCeEEEEeCCEEEEEECCCCCCCCC----cCcEeeEEEEeecccccEEEEEecCCccchhhceecCCEEE
Confidence 8999999999999999999999999 9999 9999999999999999999999864 23356888954
No 20
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=99.96 E-value=1.6e-29 Score=201.97 Aligned_cols=138 Identities=19% Similarity=0.281 Sum_probs=109.8
Q ss_pred CCCCCCCCeEEeeecEEEEEe---e-----eeEEEEEEeEEecCCcccCCCCCCCeeEEE--------eCCCCcccCCcc
Q psy14129 7 RTLSSLHPVHRCTQTSLHSIE---K-----KVDQTLNFKKWYDPVLQWDPKKYGDIKQIY--------LAPQEVWQPDLS 70 (160)
Q Consensus 7 r~~~~~rPv~~~~~~~~~~i~---~-----~~~~~~~~~~W~D~rL~wn~~~~~~i~~i~--------~~~~~iW~Pdi~ 70 (160)
+-.++++|+.|..+..+.+|. + +++ .+++|+|+|+||+| +|++.+. ++.++||+||++
T Consensus 4 ~n~s~~~pv~V~~~~~l~~i~~vde~~~~~t~~-~~l~~~W~D~rL~~-----~~~~~l~l~~~~~~~ip~~~IW~Pdi~ 77 (322)
T 3rqw_A 4 DNAADARPVDVSVSIFINKIYGVNTLEQTYKVD-GYIVAQWTGKPRKT-----PGDKPLIVENTQIERWINNGLWVPALE 77 (322)
T ss_dssp -------CEEEEEEEEEEEEEEEETTTTEEEEE-EEEEEEEECSCCCC-----STTSCEEEETHHHHHHHHTTCCCCCEE
T ss_pred CCCCCCCCEEEEEEEEEEeeccccccCcEEEEE-EEEeeEEechhhCC-----CCCCceeecchhhcccccccccCCcEE
Confidence 334567899999999987762 1 222 23899999999998 4566664 458999999999
Q ss_pred ceecCCCCCCCCCcceEEEEeecCeEEEecCcEEEEEEeecccCCCCccceEEEEEeccccccCcEEEEECCCC-----C
Q psy14129 71 TFNSAGGNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDFLACPSR-----S 145 (160)
Q Consensus 71 ~~n~~~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~~~C~~~l~~fPfD~q~C~l~~~s~~y~~~~l~l~~~~~~-----~ 145 (160)
++|+++ ... ..+..++|++||+|.|..+++.++.|+||+++||||+|+|+++|+||+|+++++++.+.+.. +
T Consensus 78 l~N~~~-~~~--~~~~~~~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~ 154 (322)
T 3rqw_A 78 FINVVG-SPD--TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDN 154 (322)
T ss_dssp ETTBSS-CCE--EEEEEEEECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSEEEEEEEEECCSCSSSS
T ss_pred EEcccC-ccc--ccceeEEEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEcccCcceEEEEECCCcccccCC
Confidence 999988 333 67889999999999999999999999999999999999999999999999999999986422 1
Q ss_pred CCcccccc
Q psy14129 146 MPLIRWAR 153 (160)
Q Consensus 146 ~~~~ew~~ 153 (160)
..+.||..
T Consensus 155 ~~~~ew~l 162 (322)
T 3rqw_A 155 EEIDEWWI 162 (322)
T ss_dssp CSSSSEEE
T ss_pred CCCCceEE
Confidence 15678865
No 21
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=49.53 E-value=15 Score=26.38 Aligned_cols=27 Identities=11% Similarity=0.012 Sum_probs=23.7
Q ss_pred CCCCCCCCCeEEeeecEEEEEeeeeEEE
Q psy14129 6 TRTLSSLHPVHRCTQTSLHSIEKKVDQT 33 (160)
Q Consensus 6 ~r~~~~~rPv~~~~~~~~~~i~~~~~~~ 33 (160)
..|++..||+.+. .++.|.++..+.++
T Consensus 12 ~~Yd~~~RP~~~~-~~v~V~~~~~l~~i 38 (204)
T 3sq6_A 12 KNYNPDVIPTQRD-RPVTVYFSLSLLQI 38 (204)
T ss_dssp TTCCTTSCCCCSS-CCEEEEEEEEEEEE
T ss_pred hcCCCCCCCCCCC-CcEEEEEEEEhhhe
Confidence 4799999999998 89999998888776
No 22
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=41.31 E-value=19 Score=25.92 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=24.3
Q ss_pred CCCCCCCCCeEEeeecEEEEEeeeeEEE
Q psy14129 6 TRTLSSLHPVHRCTQTSLHSIEKKVDQT 33 (160)
Q Consensus 6 ~r~~~~~rPv~~~~~~~~~~i~~~~~~~ 33 (160)
..|++..||+.+...++.|.+...+.++
T Consensus 14 ~~Yd~~~RP~~~~~~pv~V~~~~~l~~i 41 (212)
T 2qc1_B 14 EDYSSVVRPVEDHREIVQVTVGLQLIQL 41 (212)
T ss_dssp TTCCSSSCSCSSTTSCEEEEEEEEEEEE
T ss_pred HhCCCCCCCccCCCCcEEEEEEEEEecc
Confidence 3799999999998889999998877776
No 23
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=34.97 E-value=32 Score=24.81 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=22.2
Q ss_pred CCCCCCCCeEEeeecEEEEEeeeeEEEE
Q psy14129 7 RTLSSLHPVHRCTQTSLHSIEKKVDQTL 34 (160)
Q Consensus 7 r~~~~~rPv~~~~~~~~~~i~~~~~~~~ 34 (160)
+|++..|||.+ ..+..|.+...+.++.
T Consensus 15 ~Yn~~~rPv~~-~~pv~V~~~l~l~~i~ 41 (205)
T 4aoe_A 15 RANPNNIPIVD-EQPVKVSFKYSLQDIY 41 (205)
T ss_dssp TTCCSSCCCCS-SCCEEEEEEEEEEEEE
T ss_pred hcCCCCCCCCC-CccEEEEEEEEEEEee
Confidence 78999999998 5788888888777763
No 24
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=33.58 E-value=33 Score=24.61 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=21.9
Q ss_pred CCCCCCCCeEEeeecEEEEEeeeeEEE
Q psy14129 7 RTLSSLHPVHRCTQTSLHSIEKKVDQT 33 (160)
Q Consensus 7 r~~~~~rPv~~~~~~~~~~i~~~~~~~ 33 (160)
.|++..||+ +...++.|.+...+.++
T Consensus 14 ~Yd~~~RP~-~~~~~~~V~~~~~l~~i 39 (211)
T 1uw6_A 14 TSRPDVIPT-QRDRPVAVSVSLKFINI 39 (211)
T ss_dssp HCCTTSCCC-CTTCCEEEEEEEEEEEE
T ss_pred cCCCcCCCC-CCCCcEEEEEEEEHHHh
Confidence 589999999 87888888888777665
No 25
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=32.27 E-value=38 Score=24.35 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=22.6
Q ss_pred CCCCCCCCCeEEeeecEEEEEeeeeEEEE
Q psy14129 6 TRTLSSLHPVHRCTQTSLHSIEKKVDQTL 34 (160)
Q Consensus 6 ~r~~~~~rPv~~~~~~~~~~i~~~~~~~~ 34 (160)
.+|++..|||.+ ..++.|.+...+.++.
T Consensus 14 ~~Y~~~~rPv~~-~~pv~V~~~l~l~~i~ 41 (205)
T 4aod_A 14 SRCSPLNIPIED-DQPVKVSFEYSLQKIF 41 (205)
T ss_dssp HTTCSSSCCCCS-SCCEEEEEEEEEEEEE
T ss_pred hcCCCcCCCCCC-CccEEEEEEEEeeeee
Confidence 378999999987 5788888888777763
No 26
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=27.88 E-value=34 Score=26.88 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=7.0
Q ss_pred EEeecccCCCCccce
Q psy14129 107 YCHLDLTYWPFDSQV 121 (160)
Q Consensus 107 ~C~~~l~~fPfD~q~ 121 (160)
.|.+.+..|-++...
T Consensus 143 ~C~l~f~S~~y~~~~ 157 (369)
T 2bg9_C 143 NCSLKFTALNYNANE 157 (369)
T ss_dssp EEEEEEEESSCCTTT
T ss_pred EeeEEEEEecccCce
Confidence 455555444444443
No 27
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=20.68 E-value=32 Score=25.30 Aligned_cols=27 Identities=4% Similarity=-0.228 Sum_probs=22.0
Q ss_pred CCCCCCC---CeEEeeecEEEEEeeeeEEE
Q psy14129 7 RTLSSLH---PVHRCTQTSLHSIEKKVDQT 33 (160)
Q Consensus 7 r~~~~~r---Pv~~~~~~~~~~i~~~~~~~ 33 (160)
.|++..| |+.+...++.|.++..+.++
T Consensus 16 ~Yd~~~R~~~P~~~~~~pv~V~~~l~l~~i 45 (230)
T 4afh_A 16 TYEQLGKSGLPFLDDIGKVDVKFGLSLQLL 45 (230)
T ss_dssp HHHHHCSCSCSCSSBCCCEEEEEEEEEEEE
T ss_pred hcChhhccCCCCCCCCCCEEEEEEEEHhHh
Confidence 4677788 99998888999988877765
Done!