RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14129
(160 letters)
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 122 bits (309), Expect = 6e-36
Identities = 35/101 (34%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 38 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 97
+W D L+W+P YG +K+I++ +++W+PD+ +N+A G+ T + G I+
Sbjct: 60 QWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVK-FTKVLLDYTGHIT 118
Query: 98 WVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
W PP F+ YC + +T++PFD Q C + LG+ YDG+ +
Sbjct: 119 WTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAI 159
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 121 bits (305), Expect = 5e-34
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 97
+W D L+W+P YG IK+I L +VW PDL +N+A G+ T + G I
Sbjct: 59 QWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVH-MTKLLLDYTGKIM 117
Query: 98 WVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
W PP F+ YC + +T++PFD Q C + LG W YDG +
Sbjct: 118 WTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSI 158
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 121 bits (304), Expect = 7e-34
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 36 FKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGL 95
WYD L W+ +Y DI + L P+ +W PD+ N+ G + + +G
Sbjct: 59 DHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAY-FCNVLVRPNGY 117
Query: 96 ISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
++W+PP F+ C +++ Y+PFD Q C L + Y+ N I
Sbjct: 118 VTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISM 160
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 121 bits (304), Expect = 8e-34
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 35 NFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDG 94
+W D L W+ +Y I + + + +W PD+ N+ G + + +DG
Sbjct: 55 IEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAY-YANVLVYNDG 113
Query: 95 LISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
+ W+PP ++ C + +TY+PFD Q C L+ S Y+ + ++
Sbjct: 114 SMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNL 157
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 119 bits (299), Expect = 4e-33
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 36 FKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGL 95
W D LQWDP Y IK + + +VWQPD+ N+ G+ + G
Sbjct: 57 NLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITL-HVNVLVQHTGA 115
Query: 96 ISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
+SW P ++ C + + Y+PFD Q C ++ S+ YD + +
Sbjct: 116 VSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVIL 158
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 109 bits (275), Expect = 8e-31
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 38 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 97
+W L WDP +YG+I + ++W PD++ ++S V + + DG +
Sbjct: 68 RWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLS--PQIAVVTHDGSVM 125
Query: 98 WVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
++P + C + C + GSWVY G ID
Sbjct: 126 FIPAQRLSFMCDPT-GVDSEEGATCAVKFGSWVYSGFEIDL 165
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 108 bits (272), Expect = 2e-30
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 38 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 97
W D LQW+ +Y +KQ+ + +W PDL+ +N+ +V + +S G +
Sbjct: 57 SWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLT--PQLALVNSSGHVQ 114
Query: 98 WVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
++P + + C + C+L GSW + +D
Sbjct: 115 YLPSIRQRFSCDVSGVDTE-SGATCKLKFGSWTHHSRELDL 154
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 113 bits (283), Expect = 2e-30
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 38 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 97
+W D L+W+P YG IK+I L +VW PDL +N+A G+ T + G I
Sbjct: 83 QWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVH-MTKLLLDYTGKIM 141
Query: 98 WVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
W PP F+ YC + +T++PFD Q C + LG W YDG +
Sbjct: 142 WTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSI 182
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 113 bits (284), Expect = 2e-30
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 36 FKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGL 95
WYD L W+ +Y DI + L P+ +W PD+ N+ G + + +G
Sbjct: 80 DHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAY-FCNVLVRPNGY 138
Query: 96 ISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
++W+PP F+ C +++ Y+PFD Q C L + Y+ N I
Sbjct: 139 VTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISM 181
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 112 bits (282), Expect = 4e-30
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 35 NFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDG 94
W D LQWDP Y IK + + +VWQPD+ N+ G+ + G
Sbjct: 80 LNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITL-HVNVLVQHTG 138
Query: 95 LISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
+SW P ++ C + + Y+PFD Q C ++ S+ YD + +
Sbjct: 139 AVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVIL 182
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 110 bits (277), Expect = 2e-29
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 35 NFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDG 94
+W D L W+ +Y I + + + +W PD+ N+ G + + +DG
Sbjct: 55 IEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAY-YANVLVYNDG 113
Query: 95 LISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
+ W+PP ++ C + +TY+PFD Q C L+ S Y+ + ++
Sbjct: 114 SMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNL 157
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 104 bits (260), Expect = 2e-28
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 38 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 97
W D +L+WDP+ D ++I ++P E+W PD+ FNS + T I S+G +
Sbjct: 68 SWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDR-TTQAIVFSNGTVL 126
Query: 98 WVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
W+PP +V C D C GSWVY + +D
Sbjct: 127 WIPPAVLKVLCVSQ-----DDVDSCHFQFGSWVYSVDEVDI 162
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 101 bits (253), Expect = 1e-27
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 38 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 97
W D L W+ D + + +W PDL+ +N+ +V SDG +
Sbjct: 58 TWSDRTLAWNSSHSPDQ--VSVPISSLWVPDLAAYNAISKPEVLTP--QLARVVSDGEVL 113
Query: 98 WVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
++P + + C + C + +GSW + I
Sbjct: 114 YMPSIRQRFSCDVSGVDTE-SGATCRIKIGSWTHHSREISV 153
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 96.4 bits (240), Expect = 7e-26
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 38 KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 97
W P + Q+ L ++W PDLS +N+ ++ + S DG +
Sbjct: 55 SWKVPYY-SSLLSSSSLDQVSLPVSKMWTPDLSFYNAIAAPELLS--ADRVVVSKDGSVI 111
Query: 98 WVPPCQFQVYCHL-DLTYWPFDSQVCELILGSWVYDGNNIDF 138
+VP + + C L ++ P C + +GSW +D
Sbjct: 112 YVPSQRVRFTCDLINVDTEPG--ATCRIKVGSWTHDNKQFAL 151
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 95.0 bits (237), Expect = 2e-24
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 8/122 (6%)
Query: 21 TSLHSI-EKKVDQTLNF---KKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAG 76
+S+ + +N W D L +DP + G ++ P+ +W P++ N
Sbjct: 29 IESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVNVEN 87
Query: 77 GNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNI 136
D S DG + ++ +V LD +PFDSQ + L D NI
Sbjct: 88 ARDADV---VDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNI 144
Query: 137 DF 138
Sbjct: 145 VL 146
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 90.5 bits (225), Expect = 2e-23
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 8/122 (6%)
Query: 21 TSLHSI-EKKVDQTLNF---KKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAG 76
+S+ +K +N W D L +DP + G ++ P+ +W P++ N
Sbjct: 25 IECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVNVEN 83
Query: 77 GNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNI 136
D S DG + ++ +V LD DSQ + L D NI
Sbjct: 84 ARDAD---VVDISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNI 140
Query: 137 DF 138
Sbjct: 141 VL 142
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 85.2 bits (211), Expect = 1e-20
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 6/124 (4%)
Query: 21 TSLHSI-EKKVDQTLNF---KKWYDPVLQWDPKKYGDIKQIYLAP-QEVWQPDLSTFNSA 75
++ I ++ + + W D L + K G + L ++W PD N
Sbjct: 37 RTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEK 96
Query: 76 GGN-DVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGN 134
+DG + + + C + L Y+P D Q C + L S+ Y
Sbjct: 97 QAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTK 156
Query: 135 NIDF 138
+I++
Sbjct: 157 DIEY 160
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 82.8 bits (205), Expect = 8e-20
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 10/125 (8%)
Query: 21 TSLHSI-EKKVDQTLNF---KKWYDPVLQWDPKKYGDIKQIYLAP---QEVWQPDLSTFN 73
++ + + ++ +W + K ++ + +W P L N
Sbjct: 21 NKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFIN 80
Query: 74 SAGGNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDG 133
G G + DG + + +D +PFD Q L L + Y+
Sbjct: 81 VVGS---PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNN 137
Query: 134 NNIDF 138
+ F
Sbjct: 138 QQLRF 142
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 1e-04
Identities = 30/171 (17%), Positives = 45/171 (26%), Gaps = 66/171 (38%)
Query: 15 VHRCTQTSLHSIEKKVDQTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNS 74
+H + ++ D TL K IK A +P NS
Sbjct: 101 IH----ALAAKLLQENDTTL-------------VKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 75 A-----------------G-GNDVSPFGE------TYH------IASSDGL---ISWVPP 101
A G GN F E TYH I S +
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 102 CQFQVYCHLDLTYWPFDSQVCELILGSWVYDGN---NIDFLACPSRSMPLI 149
+V+ + + W+ + + + D+L S PLI
Sbjct: 204 DAEKVFTQ------GLN-------ILEWLENPSNTPDKDYLLSIPISCPLI 241
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450,
CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase,
heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB:
3ruk_A*
Length = 494
Score = 27.9 bits (63), Expect = 1.8
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 22 SLHSIEKKVDQTLNFKKWYDPVLQWDPKKYGDIKQIYLAPQEV 64
SL + + NF K KKYG I + + +
Sbjct: 21 SLPFLPRHGHMHNNFFKLQ--------KKYGPIYSVRMGTKTT 55
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta
sheet, transport protein; 1.90A {Methanosarcina
acetivorans}
Length = 294
Score = 26.3 bits (57), Expect = 4.9
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 44 LQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 97
++W KK + + + W+ +L + F I G +
Sbjct: 1 MEWAAKK---TNSLTSSSERTWKANLLVPVEDPRELMGTFDFLRDITYPKGSVK 51
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4
tetrahedral Zn+2, antiparallel beta strand and alpha
helix, NESG project; NMR {Escherichia coli} SCOP:
g.39.1.9
Length = 68
Score = 24.9 bits (54), Expect = 5.7
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 100 PPCQFQVYCHLDLTYWPFDSQVCELI-LGSWVYDGNNI 136
P C V + PF S+ C+LI LG W + I
Sbjct: 13 PTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRI 50
>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB:
3pvq_A
Length = 306
Score = 25.8 bits (56), Expect = 7.5
Identities = 7/52 (13%), Positives = 13/52 (25%)
Query: 87 YHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
Y I + D WV W ++ + Y+ +
Sbjct: 52 YEIQTPDDYTGWVHRMVITPMSKERYDEWNRAEKIVVTSHYGFAYEKPDESS 103
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate
dependent hydroxylase...; double stranded barrel helix,
dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis}
PDB: 2rdn_A* 2rdr_A* 2rds_A*
Length = 288
Score = 25.7 bits (56), Expect = 8.0
Identities = 9/46 (19%), Positives = 11/46 (23%)
Query: 77 GNDVSPFGETYHIASSDGLISWVPPCQFQVYCHLDLTYWPFDSQVC 122
G V F T S P + H D Y +
Sbjct: 108 GEPVFVFLSTTIRYYPSQAGSEEPSFHYLTPFHQDGFYIGPNQDFR 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.469
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,558,481
Number of extensions: 136889
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 43
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)