RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14129
         (160 letters)



>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
           pond snail (Lymnaea stagnalis) [TaxId: 6523]}
          Length = 208

 Score = 63.3 bits (153), Expect = 2e-13
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 38  KWYDPVLQWDPKKYGDIKQIYLAPQEVWQPDLSTFNSAGGNDVSPFGETYHIASSDGLIS 97
            W D  L W+     D   + +    +W PDL+ +N+    +V           SDG + 
Sbjct: 58  TWSDRTLAWNSSHSPDQ--VSVPISSLWVPDLAAYNAISKPEVLTP--QLARVVSDGEVL 113

Query: 98  WVPPCQFQVYCHLDLTYWPFDSQVCELILGSWVYDGNNIDF 138
           ++P  + +  C +           C + +GSW +    I  
Sbjct: 114 YMPSIRQRFSCDVSGVDTESG-ATCRIKIGSWTHHSREISV 153


>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG
           {Escherichia coli [TaxId: 562]}
          Length = 65

 Score = 25.3 bits (55), Expect = 1.2
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 100 PPCQFQVYCHLDLTYWPFDSQVCELI-LGSWVYDGNNI 136
           P C   V       + PF S+ C+LI LG W  +   I
Sbjct: 10  PTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRI 47


>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 91

 Score = 23.5 bits (50), Expect = 7.6
 Identities = 6/19 (31%), Positives = 6/19 (31%)

Query: 138 FLACPSRSMPLIRWARRDT 156
            L CP      I W   D 
Sbjct: 14  ILTCPQYPGSEILWQHNDK 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.469 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 666,963
Number of extensions: 30071
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 9
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)