RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1413
(408 letters)
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 261 bits (669), Expect = 1e-84
Identities = 102/174 (58%), Positives = 132/174 (75%), Gaps = 2/174 (1%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSL 293
DRVAIEPG P +CK GRYNL IFFCATPPD GNL R+Y+H A FC+KLPD+V+
Sbjct: 89 DRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTF 148
Query: 294 EEGALLEPLSVGVHACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHK 353
EEGAL+EPLSVG+HACRR GVTLG KVL+ GAGPIG+VTLL A+A+GA++VV+TD+ +
Sbjct: 149 EEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATR 208
Query: 354 LKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIESTIKLGM 407
L AKE+GAD + I S +EI+ + L G +P+ TI+C+G E++I+ G+
Sbjct: 209 LSKAKEIGADLVLQI-SKESPQEIARKVEGQL-GCKPEVTIECTGAEASIQAGI 260
Score = 129 bits (327), Expect = 2e-34
Identities = 50/114 (43%), Positives = 72/114 (63%), Gaps = 5/114 (4%)
Query: 127 EASGIVSKVGAKVKHLKATRPGGCLVIVGAGSQDVKIPLVLTMTKEIDIRGVFRYANDYP 186
E +G + + A + ATR GG LV+VG GS+ +PL+ +E+DI+GVFRY N +P
Sbjct: 248 ECTGAEASIQAG---IYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWP 304
Query: 187 IALAMVASGKVDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIHCDRVAIEP 240
+A++M+AS V+VK L+TH + LE L AFET K G +K+M+ CD P
Sbjct: 305 VAISMLASKSVNVKPLVTHRFPLEKALEAFETFK--KGLGLKIMLKCDPSDQNP 356
Score = 109 bits (274), Expect = 6e-27
Identities = 43/70 (61%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 75 LRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSK 134
LR E PI +P +EVLL MH VGICGSDVHY +G+IG+F + PM++GHEASG V K
Sbjct: 19 LRL-ENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEK 77
Query: 135 VGAKVKHLKA 144
VG+ VKHLK
Sbjct: 78 VGSSVKHLKP 87
Score = 93.4 bits (233), Expect = 2e-21
Identities = 33/50 (66%), Positives = 40/50 (80%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
MH VGICGSDVHY +G+IG+F + PM++GHEASG V KVG+ VKHLK
Sbjct: 38 MHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKP 87
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 261 bits (668), Expect = 2e-84
Identities = 84/174 (48%), Positives = 110/174 (63%), Gaps = 1/174 (0%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSL 293
DRVAIEP V C C C GRYN C ++ F +TPP G L RY H A +CHK+ + +S
Sbjct: 98 DRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSY 156
Query: 294 EEGALLEPLSVGVHACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHK 353
E GA+LEPLSV + +RAGV LG VLI GAGPIGL+T+L A+A GA +VITDI E +
Sbjct: 157 ENGAMLEPLSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGR 216
Query: 354 LKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIESTIKLGM 407
LK AKE+ + S EE + I+E G +P ++C+G+ES+I +
Sbjct: 217 LKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAI 270
Score = 129 bits (327), Expect = 3e-34
Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 124 VGHEASGIVSKVGAKVKHLKATRPGGCLVIVGAGSQDVKIPLVLTMTKEIDIRGVFRYAN 183
V E +G+ S + A + A + GG + ++G G +++IP + +E+D++ +RY N
Sbjct: 255 VALECTGVESSIAAA---IWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDLQFQYRYCN 311
Query: 184 DYPIALAMVASGKVDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIH 232
+P A+ +V +G VD+ +L+TH + LED L AFETA AIKV I
Sbjct: 312 TWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQ 360
Score = 108 bits (271), Expect = 2e-26
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 75 LRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSK 134
+ E+ + EV + + GICGSDVH+ HG IG + ++GHE++G V
Sbjct: 27 PSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIA 86
Query: 135 VGAKVKHLK 143
V VK +K
Sbjct: 87 VHPSVKSIK 95
Score = 95.0 bits (237), Expect = 8e-22
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+ GICGSDVH+ HG IG + ++GHE++G V V VK +KV
Sbjct: 47 VRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKV 96
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 253 bits (648), Expect = 2e-81
Identities = 109/174 (62%), Positives = 129/174 (74%), Gaps = 1/174 (0%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSL 293
DRVA+EPGVPCR C +CKEG+YNLC + FCATPPD GNL+RYY HAADFCHKLPD+VSL
Sbjct: 86 DRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSL 145
Query: 294 EEGALLEPLSVGVHACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHK 353
EEGALLEPLSVGVHACRRAGV LG+ VL+ GAGPIGLV++L A+A GA VV T +
Sbjct: 146 EEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRR 204
Query: 354 LKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIESTIKLGM 407
L+ AK GAD T+++D E I G+ P+ TIDCSG E I +G+
Sbjct: 205 LEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGI 258
Score = 133 bits (338), Expect = 6e-36
Identities = 56/108 (51%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Query: 127 EASGIVSKVGAKVKHLKATRPGGCLVIVGAGSQDVKIPLVLTMTKEIDIRGVFRYANDYP 186
+ SG + + TR GG L++VG GSQ V +PLV +EIDI+ VFRY NDYP
Sbjct: 246 DCSGNEKCITIG---INITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYP 302
Query: 187 IALAMVASGKVDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIHCD 234
IAL MVASG+ +VK+L+TH++ LE T+ AFE A+ A N IKVMI C
Sbjct: 303 IALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCR 350
Score = 107 bits (270), Expect = 2e-26
Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 68 ILRRRFSLRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHE 127
+L ++ LR EQ+PI +P + EVLL+M VGICGSDVHY HG+I DF + DPM++GHE
Sbjct: 9 VLYKQNDLRL-EQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHE 67
Query: 128 ASGIVSKVGAKVKHLKA 144
ASG V KVG VKHLK
Sbjct: 68 ASGTVVKVGKNVKHLKK 84
Score = 92.3 bits (230), Expect = 5e-21
Identities = 34/50 (68%), Positives = 38/50 (76%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
M VGICGSDVHY HG+I DF + DPM++GHEASG V KVG VKHLK
Sbjct: 35 MAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKK 84
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 240 bits (614), Expect = 2e-76
Identities = 57/174 (32%), Positives = 81/174 (46%), Gaps = 5/174 (2%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSL 293
D VA P +PC TC C +G Y+ C + F + D G + Y LP + +
Sbjct: 79 DAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRD-GGFAEYIVVKRKNVFALPTDMPI 137
Query: 294 EEGALLEPLSVGVHACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHK 353
E+GA +EP++VG+HA A V+I GAG IGL+ + A ALGA V DI K
Sbjct: 138 EDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEK 197
Query: 354 LKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIESTIKLGM 407
L AK GA T N S L + ++ +G+ T++L +
Sbjct: 198 LALAKSFGAMQTF----NSSEMSAPQMQSVLRELRFNQLILETAGVPQTVELAV 247
Score = 95.0 bits (237), Expect = 6e-22
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 142 LKATRPGGCLVIVGAGSQDVKI---PLVLTMTKEIDIRGVFRY------ANDYPIALAMV 192
++ P L +VG QD+ + + KE+ + G + ++ A ++
Sbjct: 247 VEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLL 306
Query: 193 ASGKVDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIH 232
K+ ++ LI H E A KV++
Sbjct: 307 TERKLSLEPLIAHRGSFESFAQAVRDIARN-AMPGKVLLI 345
Score = 92.3 bits (230), Expect = 5e-21
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 68 ILRRRFSLRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHE 127
+ +R E E EV +++ G+CGSD+ + + P+ +GHE
Sbjct: 5 VNDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHYY----PITLGHE 60
Query: 128 ASGIVSKVGAKVKHLK 143
SG + VG+ V L
Sbjct: 61 FSGYIDAVGSGVDDLH 76
Score = 78.8 bits (195), Expect = 2e-16
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+ G+CGSD+ + + P+ +GHE SG + VG+ V L
Sbjct: 32 IASSGLCGSDLPRIFKNGAHYY----PITLGHEFSGYIDAVGSGVDDLHP 77
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 237 bits (606), Expect = 2e-75
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSL 293
D V++E + C C C+ G Y++C D G + Y A+ P +
Sbjct: 83 DHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRD-GGFAEYVVVPAENAWVNPKDLPF 141
Query: 294 EEGALLEPLSVGVHACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHK 353
E A+LEP VH G VLITGAGPIGL+ + RA GA ++++D ++
Sbjct: 142 EVAAILEPFGNAVHTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYR 201
Query: 354 LKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIESTIKLGM 407
L A+ N E++ + + G + ++ SG E+ I G+
Sbjct: 202 LAFARPYADRLV-----NPLEEDLLEVVRRVT-GSGVEVLLEFSGNEAAIHQGL 249
Score = 109 bits (274), Expect = 6e-27
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 124 VGHEASGIVSKVGAKVKHLKATRPGGCLVIVGAGSQDVKIPLVLTM-TKEIDIRGVF--R 180
V E SG + + L A PGG I+G S ++ L + + I G+ R
Sbjct: 234 VLLEFSGNEAAIHQG---LMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRR 290
Query: 181 YANDYPIALAMVASGKVDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIH 232
+ A+V SG+VD+ L+TH L AF +G A+KV++
Sbjct: 291 LWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLA--SGQAVKVILD 340
Score = 103 bits (259), Expect = 7e-25
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 68 ILRRRFSLRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHE 127
L L +P+ +P E+L+ + ICG+D+H R+ P++ GHE
Sbjct: 6 KLAPEEGLTL-VDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHE 64
Query: 128 ASGIVSKVGAKVKHLK 143
SG+V VG V+ +
Sbjct: 65 FSGVVEAVGPGVRRPQ 80
Score = 89.2 bits (222), Expect = 7e-20
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+ ICG+D+H R+ P++ GHE SG+V VG V+ +V
Sbjct: 32 VEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQV 81
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 230 bits (588), Expect = 3e-72
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 3/174 (1%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSL 293
R+ +P + C C C+ GR NLCR + D G + Y ++P +
Sbjct: 101 ARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRD-GGFAEYVLVPRKQAFEIPLTLDP 159
Query: 294 EEGALLEPLSVGVHACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHK 353
GA EPL+ +H +G+ GS V I G G IGL+T+ AR GA+ V+++ K
Sbjct: 160 VHGAFCEPLACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATK 219
Query: 354 LKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIESTIKLGM 407
+ A+E+GA ATV +E I+ L D I+C+G+ T+K
Sbjct: 220 RRLAEEVGATATVDPSAGDVVEAIAG--PVGLVPGGVDVVIECAGVAETVKQST 271
Score = 104 bits (263), Expect = 3e-25
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 124 VGHEASGIVSKVGAKVKHLKATRPGGCLVIVGAGSQDVKIPLVLT--MTKEIDIRGVFRY 181
V E +G+ V + + GG +VI+G Q K+ + + +E+ + G F
Sbjct: 256 VVIECAGVAETVKQS---TRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFIN 312
Query: 182 ANDYPIALAMVASGKVDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIHCD 234
+ A +VA+G +++ ++I+ L++ A +KV++
Sbjct: 313 PFVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPA--AAGEVKVLVIPS 363
Score = 87.7 bits (218), Expect = 2e-19
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAK 138
I +P ++L+++ GICG+D H L G+F + P+ +GHE GIV + G+
Sbjct: 38 RNVGIPEPGPDDLLVKVEACGICGTDRHLLH----GEFPSTPPVTLGHEFCGIVVEAGSA 93
Query: 139 VKHLK 143
V+ +
Sbjct: 94 VRDIA 98
Score = 73.8 bits (182), Expect = 1e-14
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+ GICG+D H L G+F + P+ +GHE GIV + G+ V+ +
Sbjct: 54 VEACGICGTDRHLLH----GEFPSTPPVTLGHEFCGIVVEAGSAVRDIAP 99
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 224 bits (574), Expect = 1e-70
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 6/174 (3%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSL 293
D V++E + C C C+ G+Y++C+ D G + Y A K P +
Sbjct: 87 DYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTD-GVFAEYAVVPAQNIWKNPKSIPP 145
Query: 294 EEGALLEPLSVGVHACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHK 353
E L EPL V G G VLITGAGP+GL+ + A+A GA V++++ + +
Sbjct: 146 EYATLQEPLGNAVDTVLA-GPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFR 204
Query: 354 LKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIESTIKLGM 407
+ AK++GAD + N E++ ++++ G D ++ SG ++ G+
Sbjct: 205 RELAKKVGADYVI----NPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALEQGL 254
Score = 97.3 bits (243), Expect = 9e-23
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 124 VGHEASGIVSKVGAKVKHLKATRPGGCLVIVGAGSQDVKIPLV-LTMTKEIDIRGVF--R 180
V E SG + L+A P G + ++G V I L + K + I G+
Sbjct: 239 VFLEFSGAPKALEQG---LQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRH 295
Query: 181 YANDYPIALAMVASGKVDVKKLITHNY-LLEDTLHAFETAKTGAGNAIKVMI 231
+ ++ SGK+++ +ITH Y + AFE + AG KV+
Sbjct: 296 LWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMR--AGKTGKVVF 345
Score = 97.3 bits (243), Expect = 9e-23
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAK 138
+ + P EVL+++ ICG+D+H + R+ P I+GHE +G V ++G
Sbjct: 20 VEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPG 79
Query: 139 VKHLK 143
V+ ++
Sbjct: 80 VEGIE 84
Score = 84.2 bits (209), Expect = 4e-18
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+ ICG+D+H + R+ P I+GHE +G V ++G V+ ++V
Sbjct: 36 VLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEV 85
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 202 bits (515), Expect = 1e-61
Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 24/189 (12%)
Query: 234 DRVAIEPGVP--CRTCTYCKEGRYNLCRQIFFCAT--PPDHGNLSRYYRHAADFCHKLPD 289
D V P T Y + + ++ + HG +S ++ + ++P
Sbjct: 81 DIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPR 140
Query: 290 HVSLEEGALLEPLSVGVHACRRAGVTL------GSKVLITGAGPIGLVTLLTARA--LGA 341
+ E G L+EP+S+ A A + S + G G +GL+TL + G
Sbjct: 141 SQA-ELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGY 199
Query: 342 SRVVI---TDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSG 398
+ D + + +E+ A R +E++ EQ D + +G
Sbjct: 200 ENLYCLGRRDRPDPTIDIIEELDATYV--DSRQTPVEDVPD------VYEQMDFIYEATG 251
Query: 399 IESTIKLGM 407
+
Sbjct: 252 FPKHAIQSV 260
Score = 98.9 bits (247), Expect = 3e-23
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 68 ILRRRFSLRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHE 127
+ R E KP +P+ E L+ VG+CG+D + G G D +++GHE
Sbjct: 6 VKRGEDRPVVIE-KPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHE 64
Query: 128 ASGIVSKVGAKVKHLKA 144
A G+V V L+
Sbjct: 65 AVGVV--VDPNDTELEE 79
Score = 84.3 bits (209), Expect = 4e-18
Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 14/117 (11%)
Query: 127 EASGIVSKVGAKVKHLKATRPGGCLVIVGAGSQ-----DVKIPLVLTMTKEIDIRGVFRY 181
EA+G ++A P G ++G S D + + G
Sbjct: 248 EATGFPKHAIQS---VQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNS 304
Query: 182 ANDY--PIALAMVASGKVDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIHCDRV 236
++ + K ++ L+T + L + AF+ IK I V
Sbjct: 305 HVEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFDD----DDTTIKTAIEFSTV 357
Score = 83.1 bits (206), Expect = 9e-18
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
VG+CG+D + G G D +++GHEA G+V V L+
Sbjct: 32 TLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVGVV--VDPNDTELEE 79
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 202 bits (515), Expect = 4e-61
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 14/183 (7%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDH--- 290
+ V E + C C C EG N C + D G + Y + A + L +
Sbjct: 123 EPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVD-GAFAEYVKVDAKYAWSLRELEGV 181
Query: 291 ----VSLEEGALLEPLSVGVHAC--RRAGVTLGSKVLITGAGPIGLVTLLTARALGASRV 344
G+L+EP SV +A R G+ G V+I G GPIGL + + GAS+V
Sbjct: 182 YEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKV 241
Query: 345 VITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIESTIK 404
++++ E + AKE+GAD + + + E +++ G ++ +G+ +
Sbjct: 242 ILSEPSEVRRNLAKELGADHVI----DPTKENFVEAVLDYTNGLGAKLFLEATGVPQLVW 297
Query: 405 LGM 407
+
Sbjct: 298 PQI 300
Score = 84.0 bits (208), Expect = 6e-18
Identities = 20/113 (17%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 124 VGHEASGIVSKVGAKVKHLKATRPG--GCLVIVGAGSQDVKIPLVLTMTKEIDIRGVFRY 181
+ EA+G+ V +++ + G + IV + + + + I G +
Sbjct: 285 LFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQGH 344
Query: 182 A--NDYPIALAMVASGKVDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIH 232
+ +P ++++ASG +D+ K+I+ +E+ + +T + +KV +
Sbjct: 345 SGHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQTD-KSLVKVTML 395
Score = 77.0 bits (190), Expect = 1e-15
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 79 EQKPI-EDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDF----RLSDPMIVGHEASGIVS 133
E+ P E+++++ GICGSDVH + G P+ +GHE SG+V
Sbjct: 45 EEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVV 104
Query: 134 KVGAKV 139
+ G +
Sbjct: 105 EAGPEA 110
Score = 64.7 bits (158), Expect = 1e-11
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 1 MHCVGICGSDVHYLTHGQIGDF----RLSDPMIVGHEASGIVSKVGAKV------KHLKV 50
+ GICGSDVH + G P+ +GHE SG+V + G + K ++
Sbjct: 62 VKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEI 121
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 172 bits (439), Expect = 2e-50
Identities = 33/186 (17%), Positives = 58/186 (31%), Gaps = 24/186 (12%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCR--QIFFCATPPDHGNLSRYYRHAADFCHKLPDHV 291
D V C C C GR + C + G + ++ + K+P +
Sbjct: 83 DLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSI 142
Query: 292 SLEEGALLEPLSVGVHACRRA--------------GVTLGSKVLITGAGPIGLVTLLTAR 337
+ G L +PL+ + G KVL+ G GPIG++ L R
Sbjct: 143 E-DIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFR 201
Query: 338 ALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCS 397
G + +++ N +++ + D ID +
Sbjct: 202 TYGLEVWMANRREPTEVEQTVIEETKTNYYNSSN-GYDKLKD------SVGKFDVIIDAT 254
Query: 398 GIESTI 403
G + I
Sbjct: 255 GADVNI 260
Score = 81.3 bits (201), Expect = 4e-17
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 11/120 (9%)
Query: 124 VGHEASGIVSKVGAKVKHLKATRPGGCLVIVGAGSQD----VKIPLVLTMTKEIDIRGVF 179
V +A+G + V + G L + G + L + I G+
Sbjct: 249 VIIDATGADVNILGNV--IPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLV 306
Query: 180 RYAN-DYPIALAMVASGKV----DVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIHCD 234
+ A+ +AS K K LIT + D + + IK+ I +
Sbjct: 307 NGQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKIRILWE 366
Score = 74.0 bits (182), Expect = 1e-14
Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 75 LRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDF---RLSDPMIVGHEASGI 131
++ ++ + ++ + GICG+D + +G++ + D +++GHEA G+
Sbjct: 13 VQVKDVDEKKLDSYGKIKIRTIYNGICGADREIV-NGKLTLSTLPKGKDFLVLGHEAIGV 71
Query: 132 VSKVGAKVK 140
V +
Sbjct: 72 VEESYHGFS 80
Score = 62.0 bits (151), Expect = 9e-11
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 1 MHCVGICGSDVHYLTHGQIGDF---RLSDPMIVGHEASGIVSKVGAKVK 46
GICG+D + +G++ + D +++GHEA G+V +
Sbjct: 33 TIYNGICGADREIV-NGKLTLSTLPKGKDFLVLGHEAIGVVEESYHGFS 80
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 136 bits (346), Expect = 8e-37
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 12/182 (6%)
Query: 234 DRVAIEPGVPCRTCTYCKEGR-YNLCRQIFFCATPPDHGNLSRY------YR--HAADFC 284
D + G+ C C +CK + LC +
Sbjct: 102 DLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDV 161
Query: 285 HKLPDHVSLEEGALLEP-LSVGVHACRR-AGVTLGSKVLITGAGPIGLVTLLTARALGAS 342
K+ + L+ A+ + HA G V+I GAGP+GL ++ AR+LGA
Sbjct: 162 LKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAE 221
Query: 343 RVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIEST 402
V++ ++LK A+E+GAD T+ R S+EE I+++ G D ++ +G
Sbjct: 222 NVIVIAGSPNRLKLAEEIGADLTLNR-RETSVEERRKAIMDITHGRGADFILEATGDSRA 280
Query: 403 IK 404
+
Sbjct: 281 LL 282
Score = 66.5 bits (163), Expect = 3e-12
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAK 138
++ I D +L+E+ G+CGSDVH D R+ P+I+GHE +G V +V +
Sbjct: 33 KEFEISDIPRGSILVEILSAGVCGSDVHMFRG---EDPRVPLPIILGHEGAGRVVEVNGE 89
Query: 139 VKHLKAT--RPG 148
+ L +PG
Sbjct: 90 KRDLNGELLKPG 101
Score = 65.3 bits (160), Expect = 8e-12
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 142 LKATRPGGCLVIVGAGSQDVKIPLVLT---MTKEIDIRGVF-RYANDYPIALAMVASGKV 197
+ R GG + G +P + + K +G++ + + +++ +
Sbjct: 285 SELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQ 344
Query: 198 DVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIH 232
+ KLITH L++ A E + + A+KV+++
Sbjct: 345 LLSKLITHRLPLKEANKALELME--SREALKVILY 377
Score = 51.1 bits (123), Expect = 3e-07
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKVD 51
+ G+CGSDVH D R+ P+I+GHE +G V +V + + L +
Sbjct: 49 ILSAGVCGSDVHMFRGE---DPRVPLPIILGHEGAGRVVEVNGEKRDLNGE 96
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 121 bits (307), Expect = 2e-31
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFC--ATPPDHGNLSRYYR-HAADF-CHKLPD 289
DRV + P + + G + + + G ++ + AD LP
Sbjct: 79 DRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPK 138
Query: 290 HVSLEEGALL-EPLSVGVHACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITD 348
+ LE ++ + ++ G H A + LG V + G GP+GL+++ A LGA R+
Sbjct: 139 EIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVG 198
Query: 349 ILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIESTIKL 405
+H A E GA + N+ +I I++ G+ DK + G T
Sbjct: 199 SRKHCCDIALEYGATDII----NYKNGDIVEQILKATDGKGVDKVVIAGGDVHTFAQ 251
Score = 56.8 bits (138), Expect = 4e-09
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 81 KPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVK 140
KP P D ++ V C SD+H + G IG MI+GHEA G V +VG++VK
Sbjct: 19 KPAPGPFD--AIVRPLAVAPCTSDIHTVFEGAIG---ERHNMILGHEAVGEVVEVGSEVK 73
Query: 141 HLK 143
K
Sbjct: 74 DFK 76
Score = 53.3 bits (129), Expect = 5e-08
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 6 ICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
C SD+H + G IG MI+GHEA G V +VG++VK K
Sbjct: 36 PCTSDIHTVFEGAIG---ERHNMILGHEAVGEVVEVGSEVKDFKP 77
Score = 52.9 bits (128), Expect = 6e-08
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 11/99 (11%)
Query: 142 LKATRPGGCLVIVG--AGSQDVKIPLVL--TMTKEIDIRG----VFRYANDYPIALAMVA 193
+K +PG + V ++ IP I G R + +V
Sbjct: 253 VKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGRL--RMERLIDLVF 310
Query: 194 SGKVDVKKLITHNY-LLEDTLHAFETAKTGAGNAIKVMI 231
+VD KL+TH + ++ AF K + IK ++
Sbjct: 311 YKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVV 349
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 112 bits (282), Expect = 4e-28
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 13/179 (7%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSL 293
D VA+ P C YC+ G +LC + D G + Y ++
Sbjct: 88 DLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFD-GAYAEYVIVPHYKYMYKLRRLNA 146
Query: 294 EEGALLEPLS-VGV---HACRRAGVTLGSKVLITGA-GPIGLVTLLTARALGASRVVITD 348
E A PL+ G+ A R+A + +L+ GA G +G + + A+A+ + ++ D
Sbjct: 147 VEAA---PLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVD 203
Query: 349 ILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIESTIKLGM 407
+ E ++ AK GAD + N S+++ I + + + D ID + E T+ +
Sbjct: 204 VREEAVEAAKRAGADYVI----NASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYP 258
Score = 60.7 bits (148), Expect = 2e-10
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVH-----YLTHGQIGDFRLSDPMIVGHEASGIVS 133
++ + P +VL+++ G+C SDVH + + D + P+ +GHE +G +
Sbjct: 16 QEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIE 75
Query: 134 KVGAKVKHLK 143
+VG +V
Sbjct: 76 EVGDEVVGYS 85
Score = 55.7 bits (135), Expect = 8e-09
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 142 LKATRPGGCLVIVGAGSQDVKIPLVLTMTKEIDIRGVFRY-ANDYPIALAMVASGKVDVK 200
KA G V+VG D+ L EI G +D+ + + +GK VK
Sbjct: 258 PKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGK--VK 315
Query: 201 KLITHNYLLEDTLHAFETAKTGAGNAIKVMI 231
+IT LE+ A + + +V+I
Sbjct: 316 PMITKTMKLEEANEAIDNLENFKAIGRQVLI 346
Score = 49.2 bits (118), Expect = 1e-06
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 1 MHCVGICGSDVH-----YLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+ G+C SDVH + + D + P+ +GHE +G + +VG +V
Sbjct: 32 VEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSK 86
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 106 bits (266), Expect = 7e-26
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 12/180 (6%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSL 293
D V + P V TC C+ G C + F D G + + R + KLP +S
Sbjct: 99 DPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNID-GGFAEFMRTSHRSVIKLPKDISR 157
Query: 294 EEGALLEPLS-VGV---HACRRAGVTL--GSKVLITGAGPIGLVTLLTARALGASRVVIT 347
E+ + PL+ G+ A ++A TL G+ V I G G +G + + + + + V+
Sbjct: 158 EKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIAL 217
Query: 348 DILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIESTIKLGM 407
D+ E KLK A+ +GAD V + ++EL +G + +D G ++T+
Sbjct: 218 DVKEEKLKLAERLGADHVVDAR-----RDPVKQVMELTRGRGVNVAMDFVGSQATVDYTP 272
Score = 58.8 bits (143), Expect = 8e-10
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 84 EDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSD-PMIVGHEASGIVSKVGAKVKHL 142
+V++ + G+C +D+H + G + P +GHE G + +V V+ L
Sbjct: 37 RLEGRFDVIVRIAGAGVCHTDLHLV-QGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGL 95
Query: 143 K 143
+
Sbjct: 96 E 96
Score = 50.0 bits (120), Expect = 6e-07
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 5 GICGSDVHYLTHGQIGDFRLSD-PMIVGHEASGIVSKVGAKVKHLKV 50
G+C +D+H + G + P +GHE G + +V V+ L+
Sbjct: 52 GVCHTDLHLV-QGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEK 97
Score = 48.4 bits (116), Expect = 2e-06
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 142 LKATRPGGCLVIVGAGSQDVKIPLVLTMTKEIDIRGVFRY-ANDYPIALAMVASGKVDVK 200
G L+IVG G +++ P + ++ E+ G + + + GKV
Sbjct: 272 PYLLGRMGRLIIVGYGG-ELRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQGKV--- 327
Query: 201 KLITHNYLLEDTLHAFE 217
++ + L++ E
Sbjct: 328 RVEVDIHKLDEINDVLE 344
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 102 bits (257), Expect = 1e-24
Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 16/183 (8%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPD----HGNLSRYYRHAADFCHKLPD 289
D VA+ C C C GR N C + P G+++ Y +
Sbjct: 82 DAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIG 141
Query: 290 HVSLEEGALLEPLSVGV---HACRR--AGVTLGSKVLITGAGPIGLVTLLTARALGASRV 344
+ A L G+ HA R + GS ++ G G +G V + RA+ A+RV
Sbjct: 142 DLDPVAAAPL--TDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARV 199
Query: 345 VITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIESTIK 404
+ D+ + +L A+E+GADA V S + I EL G+ D G +STI
Sbjct: 200 IAVDLDDDRLALAREVGADAAV-----KSGAGAADAIRELTGGQGATAVFDFVGAQSTID 254
Query: 405 LGM 407
Sbjct: 255 TAQ 257
Score = 66.1 bits (162), Expect = 4e-12
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAK 138
P P E+LL++ G+C SD+ + + P+ +GHE G V+++G
Sbjct: 16 VDIPTPTPGPGEILLKVTAAGLCHSDIFVM-DMPAAQYAYGLPLTLGHEGVGTVAELGEG 74
Query: 139 VKHLK 143
V
Sbjct: 75 VTGFG 79
Score = 54.5 bits (132), Expect = 2e-08
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 5 GICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
G+C SD+ + + P+ +GHE G V+++G V V
Sbjct: 36 GLCHSDIFVM-DMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV 80
Score = 51.5 bits (124), Expect = 2e-07
Identities = 9/83 (10%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 142 LKATRPGGCLVIVGAGSQDVKIPLVLTMTKEIDIRGVFRYAN--DYPIALAMVASGKVDV 199
+ G + +VG + + + + + + +A+ +G++
Sbjct: 257 QQVVAVDGHISVVGIHAGAHAKVGFFMIPFGASVVTPY-WGTRSELMEVVALARAGRL-- 313
Query: 200 KKLITHNYLLEDTLHAFETAKTG 222
+ T + L++ A+ + G
Sbjct: 314 -DIHTETFTLDEGPAAYRRLREG 335
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 97.0 bits (242), Expect = 2e-22
Identities = 55/193 (28%), Positives = 71/193 (36%), Gaps = 40/193 (20%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRY-----YRHA-------- 280
D V++ V C C CKE +C N +R Y
Sbjct: 87 DLVSVPFNVACGRCRSCKEMHTGVC----------LTVNPARAGGAYGYVDMGDWTGGQA 136
Query: 281 -------ADF-CHKLPDHVSLEEGAL-LEPLS----VGVHACRRAGVTLGSKVLITGAGP 327
ADF KLPD E L LS G H AGV GS V + GAGP
Sbjct: 137 EYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGP 196
Query: 328 IGLVTLLTARALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQG 387
+GL +AR LGA+ V++ D+ +L AK G + + I LL
Sbjct: 197 VGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG--FEIADLSLD--TPLHEQIAALLGE 252
Query: 388 EQPDKTIDCSGIE 400
+ D +D G E
Sbjct: 253 PEVDCAVDAVGFE 265
Score = 50.7 bits (122), Expect = 4e-07
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 83 IEDPDD----HEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAK 138
++DP H V+L++ ICGSD H + G+ +++GHE +G V + G
Sbjct: 24 MQDPRGKKIEHGVILKVVSTNICGSDQHMV-RGRTT---AQVGLVLGHEITGEVIEKGRD 79
Query: 139 VKHLK 143
V++L+
Sbjct: 80 VENLQ 84
Score = 48.0 bits (115), Expect = 3e-06
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 5 GICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
ICGSD H + G+ +++GHE +G V + G V++L++
Sbjct: 44 NICGSDQHMV-RGRTT---AQVGLVLGHEITGEVIEKGRDVENLQI 85
Score = 46.5 bits (111), Expect = 8e-06
Identities = 21/134 (15%), Positives = 39/134 (29%), Gaps = 30/134 (22%)
Query: 124 VGHEASGIVSKVGAKVKH-------LKATRPGGCLVIVG-------------AGSQDVKI 163
VG EA G + ++ TR G + I G A + I
Sbjct: 262 VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSI 321
Query: 164 PLVLTMTKEIDIRG----VFRYANDYPIALAMVASGKVDVKKLI-THNYLLEDTLHAFET 218
L K V +Y + + ++++ +++ L+D +
Sbjct: 322 RFGLGWAKSHSFHTGQTPVMKYN---RALMQAIMWDRINIAEVVGVQVISLDDAPRGYGE 378
Query: 219 AKTGAGNAIKVMIH 232
G K +I
Sbjct: 379 FDAGV--PKKFVID 390
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 96.6 bits (241), Expect = 3e-22
Identities = 52/186 (27%), Positives = 72/186 (38%), Gaps = 25/186 (13%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQ----------IFFCATPPDHGNLSRYYR-HAAD 282
D V++ V C C CKE R ++C F G + Y AD
Sbjct: 86 DLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYAD 145
Query: 283 F-CHKLPDHVS---LEEGALLEPLS----VGVHACRRAGVTLGSKVLITGAGPIGLVTLL 334
+ K D + L +S G H C AGV GS V I GAGP+G
Sbjct: 146 YMLLKFGDKEQAMEKIKDLTL--ISDILPTGFHGCVSAGVKPGSHVYIAGAGPVGRCAAA 203
Query: 335 TARALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTI 394
AR LGA+ V++ D +LK + G + RN + I ++L + D +
Sbjct: 204 GARLLGAACVIVGDQNPERLKLLSDAG--FETIDLRNS--APLRDQIDQILGKPEVDCGV 259
Query: 395 DCSGIE 400
D G E
Sbjct: 260 DAVGFE 265
Score = 53.4 bits (129), Expect = 6e-08
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 83 IEDPDD---HEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKV 139
+E + H V+L++ ICGSD H + G+ + ++GHE +G V + G+ V
Sbjct: 24 LEHNNRKLEHAVILKVVSTNICGSDQH-IYRGRFI---VPKGHVLGHEITGEVVEKGSDV 79
Query: 140 KHLK 143
+ +
Sbjct: 80 ELMD 83
Score = 48.0 bits (115), Expect = 3e-06
Identities = 24/134 (17%), Positives = 39/134 (29%), Gaps = 30/134 (22%)
Query: 124 VGHEASGIVSKVGAKVKH------LKATRPGGCLVIVG-------------AGSQDVKIP 164
VG EA G+ + + + R GG + I G AGS + +
Sbjct: 262 VGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDPVNKDAGSGRLHLD 321
Query: 165 LVLTMTKEIDIRG----VFRYANDYPIALAMVASGKVD--VKKLITHNYLLEDTLHAFET 218
TK I I V Y + ++ K + L+ +
Sbjct: 322 FGKMWTKSIRIMTGMAPVTNYN---RHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAK 378
Query: 219 AKTGAGNAIKVMIH 232
G+ K +I
Sbjct: 379 FD--KGSPAKFVID 390
Score = 47.7 bits (114), Expect = 3e-06
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 6 ICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
ICGSD H + G+ + ++GHE +G V + G+ V+ + +
Sbjct: 44 ICGSDQH-IYRGRFI---VPKGHVLGHEITGEVVEKGSDVELMDI 84
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 90.0 bits (224), Expect = 4e-20
Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 17/182 (9%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSL 293
D V + TC YC+EG++N+C+ + G S Y + + +S
Sbjct: 84 DNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTN-GGFSEYMLVKSSRWLVKLNSLSP 142
Query: 294 EEGALLEPLSVGV---HACRRAGVTLGSK----VLITGAGPIGLVTLLTARALGAS-RVV 345
E A L G A R+A + V++ G G + + T+ +AL + +V
Sbjct: 143 VEAAPL--ADAGTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIV 200
Query: 346 ITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIESTIKL 405
+ A E+GAD +++ + I +L G ID G E T
Sbjct: 201 GISRSKKHRDFALELGADYVS------EMKDAESLINKLTDGLGASIAIDLVGTEETTYN 254
Query: 406 GM 407
Sbjct: 255 LG 256
Score = 58.4 bits (142), Expect = 1e-09
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAK 138
E I +P EVL+ + G+C +D+ + G P+I+GHE +G + +VG
Sbjct: 19 EDVNIPEPQGEEVLIRIGGAGVCRTDLR-VWKGVEAKQGFRLPIILGHENAGTIVEVGE- 76
Query: 139 VKHLK 143
+ +K
Sbjct: 77 LAKVK 81
Score = 50.7 bits (122), Expect = 4e-07
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 142 LKATRPGGCLVIVGAGSQDVKIPLVLTMTKEIDIRGVFRY-ANDYPIALAMVASGKVDVK 200
K G +++VG + V + T + G ND + + SGK+
Sbjct: 256 GKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLGSNYGSLNDLEDVVRLSESGKI--- 312
Query: 201 KLITHNYLLEDTLHAFE 217
K L+D AF
Sbjct: 313 KPYIIKVPLDDINKAFT 329
Score = 46.8 bits (112), Expect = 6e-06
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 5 GICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
G+C +D+ + G P+I+GHE +G + +VG + +K
Sbjct: 39 GVCRTDLR-VWKGVEAKQGFRLPIILGHENAGTIVEVGE-LAKVKK 82
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 81.1 bits (201), Expect = 3e-17
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 11/169 (6%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSL 293
D V I PG+ C C C G NLC + G + Y P ++S
Sbjct: 83 DEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRH-GTYAEYVVLPEANLAPKPKNLSF 141
Query: 294 EEGALLEPLSVGV--HA-CRRAGVTLGSKVLITGA-GPIGLVTLLTARALGASRVVITDI 349
EE A + PL+ + GV G VL+ A + + + A+ GA RV+ T
Sbjct: 142 EEAAAI-PLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAG 199
Query: 350 LEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSG 398
E KL+ AK +GAD TV N++ + + L G+ DK +D +G
Sbjct: 200 SEDKLRRAKALGADETV----NYTHPDWPKEVRRLTGGKGADKVVDHTG 244
Score = 41.0 bits (97), Expect = 4e-04
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 131 IVSKVGAKV--KHLKATRPGGCLVIVGA-GSQDVKIPLVLTMTKEIDIRGVF-RYANDYP 186
+V GA +KAT GG + I GA + +P +++ I G +
Sbjct: 239 VVDHTGALYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMASKSRLF 298
Query: 187 IALAMVASGKVDVKKLITHNYLLEDTLHAFE 217
L V GK +K ++ LE
Sbjct: 299 PILRFVEEGK--LKPVVGQVLPLEAAAEGHR 327
Score = 38.3 bits (90), Expect = 0.003
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 75 LRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSK 134
L + P+ +P EV + + + DV ++ G +L P ++G + SG+V
Sbjct: 15 LEVADL-PVPEPGPKEVRVRLKAAALNHLDV-WVRKGVAS-PKLPLPHVLGADGSGVVDA 71
Query: 135 VGAKVKHLK 143
VG V+
Sbjct: 72 VGPGVEGFA 80
Score = 32.6 bits (75), Expect = 0.24
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 27 PMIVGHEASGIVSKVGAKVKHLKV 50
P ++G + SG+V VG V+
Sbjct: 58 PHVLGADGSGVVDAVGPGVEGFAP 81
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 81.5 bits (202), Expect = 4e-17
Identities = 48/190 (25%), Positives = 72/190 (37%), Gaps = 35/190 (18%)
Query: 244 CRTCTYCKEGRYNLCRQIFFCATPPDHGNL-----SRYYRHAADFCH------------- 285
C+ C C NLC ++ P L SR+ H
Sbjct: 97 CKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVV 156
Query: 286 ------KLPDHVSLEEGALLEPLSVGVH-----ACRRAGVTLGSKVLITGAGPIGLVTLL 334
++ D +LE L+ G A A VT GS + G G +GL ++
Sbjct: 157 SEANLARVDDEANLERVCLI---GCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAII 213
Query: 335 TARALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTI 394
+ GASR++ DI K AK +G AT ++ + + I EL G D ++
Sbjct: 214 GCKIAGASRIIAIDINGEKFPKAKALG--ATDCLNPRELDKPVQDVITELTAG-GVDYSL 270
Query: 395 DCSGIESTIK 404
DC+G T+K
Sbjct: 271 DCAGTAQTLK 280
Score = 67.6 bits (166), Expect = 1e-12
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 83 IEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHL 142
+ P EV +++ +C +D++ + F P+++GHE +GIV VG V +
Sbjct: 28 VSPPKACEVRIQVIATCVCPTDINATDPKKKALF----PVVLGHECAGIVESVGPGVTNF 83
Query: 143 KA 144
K
Sbjct: 84 KP 85
Score = 55.7 bits (135), Expect = 9e-09
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+ +C +D++ + F P+++GHE +GIV VG V + K
Sbjct: 40 VIATCVCPTDINATDPKKKALF----PVVLGHECAGIVESVGPGVTNFKP 85
Score = 43.0 bits (102), Expect = 1e-04
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 142 LKATRPG-GCLVIVGAGSQDVKIPLVLTMTKEIDIRGVF----RYANDYPIALAMVASGK 196
+ T G G +VGA ++ IP V + I G F + + P ++ + K
Sbjct: 283 VDCTVLGWGSCTVVGAKVDEMTIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKK 341
Query: 197 VDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIH 232
D+ L+TH E A + K G +I+ ++
Sbjct: 342 FDLDLLVTHALPFESINDAIDLMK--EGKSIRTILT 375
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 80.7 bits (200), Expect = 5e-17
Identities = 46/188 (24%), Positives = 70/188 (37%), Gaps = 35/188 (18%)
Query: 244 CRTCTYCKEGRYNLC---RQIFFCATPPDHGNLSRYYRHAADFCH--------------- 285
C C +C + NLC R PD SR+ H
Sbjct: 96 CGECKFCLNPKTNLCQKIRVTQGKGLMPDGT--SRFTCKGKTILHYMGTSTFSEYTVVAD 153
Query: 286 ----KLPDHVSLEEGALLEPLSVGVH-----ACRRAGVTLGSKVLITGAGPIGLVTLLTA 336
K+ L++ LL G+ A A + GS + G G +GL ++
Sbjct: 154 ISVAKIDPLAPLDKVCLL---GCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGC 210
Query: 337 RALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDC 396
+ GASR++ DI + K AKE G AT I+ + I +IE+ G D + +C
Sbjct: 211 KVAGASRIIGVDINKDKFARAKEFG--ATECINPQDFSKPIQEVLIEMTDG-GVDYSFEC 267
Query: 397 SGIESTIK 404
G ++
Sbjct: 268 IGNVKVMR 275
Score = 66.1 bits (162), Expect = 4e-12
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 83 IEDPDDHEVLLEMHCVGICGSDVHYLT-HGQIGDFRLSDPMIVGHEASGIVSKVGAKVKH 141
+ P HEV +++ +C +D + L+ G F P+I+GH +GIV VG V
Sbjct: 26 VAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF----PVILGHLGAGIVESVGEGVTK 81
Query: 142 LK 143
LK
Sbjct: 82 LK 83
Score = 54.1 bits (131), Expect = 3e-08
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 1 MHCVGICGSDVHYLT-HGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+ +C +D + L+ G F P+I+GH +GIV VG V LK
Sbjct: 38 IIATAVCHTDAYTLSGADPEGCF----PVILGHLGAGIVESVGEGVTKLKA 84
Score = 38.3 bits (90), Expect = 0.004
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 142 LKATRPG-GCLVIVGAGSQDVKIPL-VLTMTKEIDIRGVF----RYANDYPIALAMVASG 195
L+A G G V+VG + +I + +G + P ++ S
Sbjct: 278 LEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSK 337
Query: 196 KVDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIH 232
K+ V + +THN ++ AFE +G +I+ ++
Sbjct: 338 KIKVDEFVTHNLSFDEINKAFELMH--SGKSIRTVVK 372
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 78.8 bits (195), Expect = 2e-16
Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 35/188 (18%)
Query: 244 CRTCTYCKEGRYNLC---RQIFFCATPPDHGNLSRYYRHAADFCH--------------- 285
C C +C+ + N C +R+
Sbjct: 98 CGECRFCQSPKTNQCVKGWANESPDVMSPKE--TRFTCKGRKVLQFLGTSTFSQYTVVNQ 155
Query: 286 ----KLPDHVSLEEGALLEPLSVGVH-----ACRRAGVTLGSKVLITGAGPIGLVTLLTA 336
K+ L+ LL GV A A V GS + G G +GL ++
Sbjct: 156 IAVAKIDPSAPLDTVCLL---GCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGC 212
Query: 337 RALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDC 396
+ GA R++ D+ K + AK G AT ++ N E IS + ++ G D +++C
Sbjct: 213 HSAGAKRIIAVDLNPDKFEKAKVFG--ATDFVNPNDHSEPISQVLSKMTNG-GVDFSLEC 269
Query: 397 SGIESTIK 404
G ++
Sbjct: 270 VGNVGVMR 277
Score = 63.4 bits (155), Expect = 3e-11
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 83 IEDPDDHEVLLEMHCVGICGSDVHYLTHG-QIGDFRLSDPMIVGHEASGIVSKVGAKVKH 141
++ P +E+ +++ G+C +D+++L G F P+++GHE +GIV VG V
Sbjct: 28 VDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGF----PVVLGHEGAGIVESVGPGVTE 83
Query: 142 LK 143
+
Sbjct: 84 FQ 85
Score = 52.6 bits (127), Expect = 8e-08
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 1 MHCVGICGSDVHYLTHG-QIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+ G+C +D+++L G F P+++GHE +GIV VG V +
Sbjct: 40 IIATGVCHTDLYHLFEGKHKDGF----PVVLGHEGAGIVESVGPGVTEFQP 86
Score = 40.7 bits (96), Expect = 6e-04
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 142 LKATRPG-GCLVIVG-AGSQDVKIPLVLTMTKEIDIRGVF----RYANDYPIALAMVASG 195
L++ G G V+VG DV + + +G + + P +
Sbjct: 280 LESCLKGWGVSVLVGWTDLHDVATRPIQLIA-GRTWKGSMFGGFKGKDGVPKMVKAYLDK 338
Query: 196 KVDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIH 232
KV + + ITH LE A + K G I+ ++
Sbjct: 339 KVKLDEFITHRMPLESVNDAIDLMK--HGKCIRTVLS 373
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 78.8 bits (195), Expect = 3e-16
Identities = 45/188 (23%), Positives = 68/188 (36%), Gaps = 35/188 (18%)
Query: 244 CRTCTYCKEGRYNLC---RQIFFCATPPDHGNLSRYYRHAADFCH--------------- 285
C C CK N C T D SR+ H
Sbjct: 97 CGKCRVCKHPEGNFCLKNDLSMPRGTMQDGT--SRFTCRGKPIHHFLGTSTFSQYTVVDE 154
Query: 286 ----KLPDHVSLEEGALLEPLSVGVH-----ACRRAGVTLGSKVLITGAGPIGLVTLLTA 336
K+ LE+ L+ G A + A VT GS + G G +GL ++
Sbjct: 155 ISVAKIDAASPLEKVCLI---GCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGC 211
Query: 337 RALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDC 396
+A GA+R++ DI + K AKE+G AT ++ + I + E+ G D + +
Sbjct: 212 KAAGAARIIGVDINKDKFAKAKEVG--ATECVNPQDYKKPIQEVLTEMSNG-GVDFSFEV 268
Query: 397 SGIESTIK 404
G T+
Sbjct: 269 IGRLDTMV 276
Score = 63.4 bits (155), Expect = 3e-11
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 83 IEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHL 142
+ P HEV ++M GIC SD H ++ G P+I GHEA+GIV +G V +
Sbjct: 28 VAPPKAHEVRIKMVATGICRSDDHVVS----GTLVTPLPVIAGHEAAGIVESIGEGVTTV 83
Query: 143 K 143
+
Sbjct: 84 R 84
Score = 52.6 bits (127), Expect = 1e-07
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
M GIC SD H ++ G P+I GHEA+GIV +G V ++
Sbjct: 40 MVATGICRSDDHVVS----GTLVTPLPVIAGHEAAGIVESIGEGVTTVRP 85
Score = 39.1 bits (92), Expect = 0.002
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 142 LKATRPG-GCLVIVG--AGSQDVKIPLVLTMTKEIDIRGVF----RYANDYPIALAMVAS 194
L + G VIVG SQ++ + +L ++ +G + + P +A +
Sbjct: 279 LSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLS-GRTWKGAIFGGFKSKDSVPKLVADFMA 337
Query: 195 GKVDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIH 232
K + LITH E F+ + +G +I+ ++
Sbjct: 338 KKFALDPLITHVLPFEKINEGFDLLR--SGESIRTILT 373
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 76.4 bits (189), Expect = 1e-15
Identities = 43/188 (22%), Positives = 69/188 (36%), Gaps = 35/188 (18%)
Query: 244 CRTCTYCKEGRYNLCRQIF---FCATPPDHGNLSRYYRHAADFCH--------------- 285
C CT C G C + F F + + + H
Sbjct: 94 CGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRE 153
Query: 286 ----KLPDHVSLEEGALLEPLSVGVH-----ACRRAGVTLGSKVLITGAGPIGLVTLLTA 336
K+ V +E PL G+ VT S + GAG +GL LL A
Sbjct: 154 NNTVKVTKDVPIELLG---PLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAA 210
Query: 337 RALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDC 396
+ GAS ++ DI+E +L+ AK++GA + N ++ I E+ G + ++
Sbjct: 211 KVCGASIIIAVDIVESRLELAKQLGATHVI----NSKTQDPVAAIKEITDG-GVNFALES 265
Query: 397 SGIESTIK 404
+G +K
Sbjct: 266 TGSPEILK 273
Score = 65.2 bits (160), Expect = 7e-12
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 83 IEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHL 142
I P EVL+++ G+C +D+ + + P ++GHE SGI+ +G V L
Sbjct: 26 IRQPQGDEVLVKVVATGMCHTDLIVRD----QKYPVPLPAVLGHEGSGIIEAIGPNVTEL 81
Query: 143 KATRPG 148
+ G
Sbjct: 82 Q---VG 84
Score = 52.1 bits (126), Expect = 1e-07
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+ G+C +D+ + + P ++GHE SGI+ +G V L+V
Sbjct: 38 VVATGMCHTDLIVRD----QKYPVPLPAVLGHEGSGIIEAIGPNVTELQV 83
Score = 40.2 bits (95), Expect = 0.001
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 142 LKATRPGGCLVIVGAGSQDVKIPLVLT--MTKEIDIRGVF----RYANDYPIALAMVASG 195
+ A G + +VGA + + I GV P + + G
Sbjct: 276 VDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQG 335
Query: 196 KVDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIH 232
K +L+ Y ++ A ++ G +K +I
Sbjct: 336 KFPFDQLVKF-YAFDEINQAAIDSR--KGITLKPIIK 369
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 76.1 bits (188), Expect = 2e-15
Identities = 38/169 (22%), Positives = 59/169 (34%), Gaps = 15/169 (8%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSL 293
DRV GR + G LS Y + P +
Sbjct: 109 DRVISTFAPGWLDGLRPGTGRTPAYETL----GGAHPGVLSEYVVLPEGWFVAAPKSLDA 164
Query: 294 EEGALLEPLSVGV---HA-CRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDI 349
E + L P G+ A + + G +V++ G G + L L A+A GA V++T
Sbjct: 165 AEASTL-PC-AGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSS 221
Query: 350 LEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCSG 398
KL A +GAD + N E+ + L D ++ +G
Sbjct: 222 SREKLDRAFALGADHGI----NRLEEDWVERVYALTGDRGADHILEIAG 266
Score = 43.0 bits (102), Expect = 1e-04
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 131 IVSKVGAKV--KHLKATRPGGCLVIVGA-GSQDVKIPLVLTMTKEIDIRGVF-RYANDYP 186
I+ G + LKA P G + ++G +V P+ + K ++G+ +
Sbjct: 261 ILEIAGGAGLGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGHRRALE 320
Query: 187 IALAMVASGKVDVKKLITHNYLLEDTLHAFE 217
+ V +K +I Y + A
Sbjct: 321 DLVGAVDRLG--LKPVIDMRYKFTEVPEALA 349
Score = 38.4 bits (90), Expect = 0.003
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 74 SLRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVS 133
L+ E+ P+ + +H++++ V + D + +G L+ P + + SG+V
Sbjct: 40 DLKLAER-PVPEAGEHDIIVRTLAVSLNYRDK-LVLETGMG-LDLAFPFVPASDMSGVVE 96
Query: 134 KVGAKVKHLK 143
VG V +
Sbjct: 97 AVGKSVTRFR 106
Score = 31.0 bits (71), Expect = 0.65
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 22 FRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
L+ P + + SG+V VG V +
Sbjct: 79 LDLAFPFVPASDMSGVVEAVGKSVTRFRP 107
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 74.5 bits (183), Expect = 9e-15
Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 11/144 (7%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSL 293
D V + P G L + + G L+ Y A P H++
Sbjct: 135 DHVIVHPA-HVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTW 193
Query: 294 EEGALLEPLSVG-----VHACRRAGVTLGSKVLITGA-GPIGLVTLLTARALGASRVVIT 347
EE A+ PL G + + R A + G VLI GA G +G + + G V
Sbjct: 194 EEAAVS-PLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAV 251
Query: 348 DILEHKLKTAKEMGADATVLIDRN 371
K + +G D I+R
Sbjct: 252 VSSAQKEAAVRALGCDLV--INRA 273
Score = 44.0 bits (104), Expect = 6e-05
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 16/85 (18%)
Query: 74 SLRFREQKPIEDPDDHEVLLEMHCVGICGSDV---------------HYLTHGQIGDFRL 118
SLR E P+ + EVL+ + I + V G
Sbjct: 49 SLRLGEV-PMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATRHD 107
Query: 119 SDPMIVGHEASGIVSKVGAKVKHLK 143
++G + SG+V + G V+ K
Sbjct: 108 QPYHVLGSDCSGVVVRTGIGVRRWK 132
Score = 36.7 bits (85), Expect = 0.013
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 8 GSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
G ++G + SG+V + G V+ K
Sbjct: 91 HFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKP 133
Score = 36.3 bits (84), Expect = 0.017
Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 13/109 (11%)
Query: 142 LKATRPGGCLVIVGAGS-QDVKIPLVLTMTKEIDIRGVFRYAN--DYPIALAMVASGKVD 198
+ R GG +V G+ S K I G AN + + SG V
Sbjct: 323 VIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSH-GANHEEQQATNRLFESGAVV 381
Query: 199 VKKLITHNYLLEDTLHAFETAKTGA--GNAIKVMIHCDRVAIEPGVPCR 245
++ Y L + A +T G KV + C A E G+
Sbjct: 382 P--AMSAVYPLAEAAEACRVVQTSRQVG---KVAVLCM--APEQGLGVT 423
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 73.7 bits (182), Expect = 1e-14
Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 234 DRVAIEPGVP-----CRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLP 288
DRV GVP C C +C +G LC + + G Y ++ LP
Sbjct: 83 DRV----GVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVN-GGYGEYVVADPNYVGLLP 137
Query: 289 DHVSLEEGALLEPLSVGV---HACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVV 345
D V E A + L GV + G V+I+G G +G V + ARA+G RV
Sbjct: 138 DKVGFVEIAPI--LCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVA 194
Query: 346 ITDILEHKLKTAKEMGADATV 366
DI + KL A+ +GA+ V
Sbjct: 195 AVDIDDAKLNLARRLGAEVAV 215
Score = 60.7 bits (148), Expect = 2e-10
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSD--PMIVGHEASGIVSKVG 136
++ P+ P +V +++ G+C +D+H GD+ + P I GHE G VS VG
Sbjct: 18 DEVPVPQPGPGQVQVKIEASGVCHTDLHAAD----GDWPVKPTLPFIPGHEGVGYVSAVG 73
Query: 137 AKVKHLK 143
+ V +K
Sbjct: 74 SGVSRVK 80
Score = 48.3 bits (116), Expect = 2e-06
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSD--PMIVGHEASGIVSKVGAKVKHLKV 50
+ G+C +D+H GD+ + P I GHE G VS VG+ V +K
Sbjct: 34 IEASGVCHTDLHAAD----GDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE 81
Score = 32.1 bits (74), Expect = 0.26
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 142 LKATRPGGCLVIVGAGSQDVKIPLVLTMTKEIDIRGV 178
+ R GG + + G D P+ + K I IRG
Sbjct: 250 IGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGS 286
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 73.7 bits (182), Expect = 1e-14
Identities = 53/141 (37%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 234 DRVAIEPGVP-----CRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLP 288
DRV G+P C C YC G+ LC D G + Y R AAD+ K+P
Sbjct: 81 DRV----GIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVD-GGYAEYCRAAADYVVKIP 135
Query: 289 DHVSLEEGALLEPLSVGV---HACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVV 345
D++S EE A + GV A + G G V I G G +G V + A+A+G VV
Sbjct: 136 DNLSFEEAAPI--FCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVV 192
Query: 346 ITDILEHKLKTAKEMGADATV 366
DI + KL+ AKE+GAD V
Sbjct: 193 AVDIGDEKLELAKELGADLVV 213
Score = 60.6 bits (148), Expect = 2e-10
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSD--PMIVGHEASGIVSKVG 136
++ EVL+ + G+C +D+H GD+ + P+I GHE GIV +VG
Sbjct: 16 KEVEKPTISYGEVLVRIKACGVCHTDLHAAH----GDWPVKPKLPLIPGHEGVGIVEEVG 71
Query: 137 AKVKHLK 143
V HLK
Sbjct: 72 PGVTHLK 78
Score = 48.7 bits (117), Expect = 2e-06
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSD--PMIVGHEASGIVSKVGAKVKHLKV 50
+ G+C +D+H GD+ + P+I GHE GIV +VG V HLKV
Sbjct: 32 IKACGVCHTDLHAAH----GDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKV 79
Score = 31.8 bits (73), Expect = 0.38
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 142 LKATRPGGCLVIVGAGSQDVKIPLVLTMTKEIDIRG 177
+ R GG V+VG +++ IP+ T+ I I G
Sbjct: 248 YNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIG 283
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 73.4 bits (181), Expect = 2e-14
Identities = 42/188 (22%), Positives = 63/188 (33%), Gaps = 36/188 (19%)
Query: 244 CRTCTYCKEGRYNLC---RQIFFCATPPDHGNLSRYYRHAADFCH--------------- 285
C +C CK N C D SR+ +
Sbjct: 98 CGSCRACKSSNSNFCEKNDMGAKTGLMADMT--SRFTCRGKPIYNLMGTSTFTEYTVVAD 155
Query: 286 ----KLPDHVSLEEGALLEPLSVGVH-----ACRRAGVTLGSKVLITGAGPIGLVTLLTA 336
K+ LE L+ G A A VT GS + G G +G ++
Sbjct: 156 IAVAKIDPKAPLES-CLI---GCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGC 211
Query: 337 RALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDC 396
+A GASR++ + K A E+G AT ++ + I I E G D ++C
Sbjct: 212 KAAGASRIIGVGTHKDKFPKAIELG--ATECLNPKDYDKPIYEVICEKTNG-GVDYAVEC 268
Query: 397 SGIESTIK 404
+G T+
Sbjct: 269 AGRIETMM 276
Score = 65.3 bits (160), Expect = 6e-12
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 83 IEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHL 142
+ P HEV +++ GICGSD L F P+I+GHEA G+V +GA V +
Sbjct: 29 VAPPKAHEVRIKILASGICGSDSSVLKEIIPSKF----PVILGHEAVGVVESIGAGVTCV 84
Query: 143 K 143
K
Sbjct: 85 K 85
Score = 53.8 bits (130), Expect = 4e-08
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+ GICGSD L F P+I+GHEA G+V +GA V +K
Sbjct: 41 ILASGICGSDSSVLKEIIPSKF----PVILGHEAVGVVESIGAGVTCVKP 86
Score = 36.0 bits (84), Expect = 0.019
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 142 LKATRPG-GCLVIVGAGSQDVKIPL-VLTMTKEIDIRG-VFRYAN--DYPIALAMVASGK 196
L++T G G V++G S + ++PL L + ++G VF + + K
Sbjct: 279 LQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFKGEEVSRLVDDYMKKK 338
Query: 197 VDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIH 232
++V L++ L+ AFE +G ++ ++
Sbjct: 339 INVNFLVSTKLTLDQINKAFELLS--SGQGVRSIMI 372
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 73.7 bits (181), Expect = 2e-14
Identities = 37/164 (22%), Positives = 52/164 (31%), Gaps = 11/164 (6%)
Query: 234 DRVAIEPGVPCRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSL 293
D V + L + + G L+ ++ PDH+S
Sbjct: 143 DEVVAHCL-SVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSW 201
Query: 294 EEGALLEPLSVG-----VHACRRAGVTLGSKVLITGA-GPIGLVTLLTARALGASRVVIT 347
EE A L + + AG+ G VLI GA G +G A A GA +
Sbjct: 202 EEAAAP-GLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICV 259
Query: 348 DILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPD 391
K + + MGA+A IDRN E
Sbjct: 260 VSSPQKAEICRAMGAEAI--IDRNAEGYRFWKDENTQDPKEWKR 301
Score = 40.2 bits (94), Expect = 0.001
Identities = 11/85 (12%), Positives = 26/85 (30%), Gaps = 16/85 (18%)
Query: 74 SLRFREQKPIEDPDDHEVLLEMHCVGI---------------CGSDVHYLTHGQIGDFRL 118
S+ + P+ + E L+ + + G Y +
Sbjct: 57 SIHLDDV-PVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHD 115
Query: 119 SDPMIVGHEASGIVSKVGAKVKHLK 143
++G + +G+V + G V +
Sbjct: 116 LPYHVIGSDLAGVVLRTGPGVNAWQ 140
Score = 37.5 bits (87), Expect = 0.007
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 142 LKATRPGGCLVIVGA-GSQDVKIPLVLTMTKEIDIRGVFRYAN--DYPIALAMVASGKVD 198
+ TR GG + + + I G +AN + A ++A G++
Sbjct: 331 VFVTRKGGTITTCASTSGYMHEYDNRYLWMSLKRIIGSH-FANYREAWEANRLIAKGRIH 389
Query: 199 VKKLITHNYLLEDTLHAFE 217
++ Y LEDT A
Sbjct: 390 P--TLSKVYSLEDTGQAAY 406
Score = 33.2 bits (76), Expect = 0.15
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 4 VGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+ G Y + ++G + +G+V + G V +
Sbjct: 95 LSTFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQA 141
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 68.4 bits (168), Expect = 6e-13
Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 23/145 (15%)
Query: 234 DRVAIEPGVP-----CRTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLP 288
D G+ C C YC+ G + C + G+ +Y A +P
Sbjct: 86 DYA----GIKWLNGSCMACEYCELGNESNCPHADL-SGYTHDGSFQQYATADAVQAAHIP 140
Query: 289 DHVSLEEGALLEPLSVGV---HACRRAGVTLGSKVLITGAGPIGL----VTLLTARALGA 341
L + A + L G+ A + A + G V I+GA GL V A+A+G
Sbjct: 141 QGTDLAQVAPI--LCAGITVYKALKSANLMAGHWVAISGAAG-GLGSLAVQY--AKAMGY 195
Query: 342 SRVVITDILEHKLKTAKEMGADATV 366
RV+ D E K + + +G + +
Sbjct: 196 -RVLGIDGGEGKEELFRSIGGEVFI 219
Score = 59.5 bits (145), Expect = 6e-10
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSD--PMIVGHEASGIVSKVG 136
+ P+ P +E+L+ + G+C +D+H GD+ L P++ GHE +G+V +G
Sbjct: 21 KDIPVPKPKANELLINVKYSGVCHTDLHAWH----GDWPLPVKLPLVGGHEGAGVVVGMG 76
Query: 137 AKVKHLKA-TRPG-GCLV 152
VK K G L
Sbjct: 77 ENVKGWKIGDYAGIKWLN 94
Score = 47.9 bits (115), Expect = 3e-06
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSD--PMIVGHEASGIVSKVGAKVKHLKV 50
+ G+C +D+H GD+ L P++ GHE +G+V +G VK K+
Sbjct: 37 VKYSGVCHTDLHAWH----GDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKI 84
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 64.9 bits (159), Expect = 1e-11
Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 23/149 (15%)
Query: 234 DRVAIEPGV-PCRTCTYCKEGRYNLCRQIFF--CATPPD----HGNLSRYYRHAADFCHK 286
RV + V C C CK C + D G + Y R F
Sbjct: 89 QRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVP 148
Query: 287 LPDHVSLEEGA-LL-------EPLSVGVHACRRAGVTLGSKVLITGAGPIGLVTLLTARA 338
+P+++ A LL PL R G G KV I G G IG + L ++A
Sbjct: 149 IPENIPSHLAAPLLCGGLTVYSPL-------VRNGCGPGKKVGIVGLGGIGSMGTLISKA 201
Query: 339 LGASRVVITDILEHKLKTAKEMGADATVL 367
+GA VI+ K + A +MGAD +
Sbjct: 202 MGAETYVIS-RSSRKREDAMKMGADHYIA 229
Score = 59.1 bits (144), Expect = 6e-10
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 85 DPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSD-PMIVGHEASGIVSKVGAKV-KHL 142
DH++ +++ G+CGSD+H G + P++VGHE G V K+G K L
Sbjct: 30 PFYDHDIDIKIEACGVCGSDIHCAA----GHWGNMKMPLVVGHEIVGKVVKLGPKSNSGL 85
Query: 143 KATRPGGCLVIVGA 156
K G V VGA
Sbjct: 86 KV----GQRVGVGA 95
Score = 53.7 bits (130), Expect = 4e-08
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSD-PMIVGHEASGIVSKVGAKV-KHLKV 50
C G+CGSD+H G + P++VGHE G V K+G K LKV
Sbjct: 41 EAC-GVCGSDIHCAA----GHWGNMKMPLVVGHEIVGKVVKLGPKSNSGLKV 87
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 63.4 bits (155), Expect = 3e-11
Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 24/139 (17%)
Query: 244 CRTCTYCKEGRYNLCRQIFFCATPPD--------HGNLSRYYRHAADFCHKLPDHVSLEE 295
C+ C CKE + C ++ F D G S ++ + + LE+
Sbjct: 95 CKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEK 154
Query: 296 GA-LL-------EPLSVGVHACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVIT 347
A LL PL + + VT G+KV + G G +G + + A A+GA V
Sbjct: 155 VAPLLCAGITTYSPL-------KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFA 207
Query: 348 DILEHKLKTAKEMGADATV 366
EHK + A MG
Sbjct: 208 -RNEHKKQDALSMGVKHFY 225
Score = 57.6 bits (140), Expect = 2e-09
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 85 DPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKA 144
+VL+++ GIC SD+H + + + PMI GHE +GI+ +VG VK K
Sbjct: 26 AVGPRDVLIDILYAGICHSDIHSA-YSEWKEGIY--PMIPGHEIAGIIKEVGKGVKKFKI 82
Query: 145 TRPGGCLVIVGA 156
G +V VG
Sbjct: 83 ----GDVVGVGC 90
Score = 51.8 bits (125), Expect = 2e-07
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
++ GIC SD+H + + + PMI GHE +GI+ +VG VK K+
Sbjct: 37 LYA-GICHSDIHSA-YSEWKEGIY--PMIPGHEIAGIIKEVGKGVKKFKI 82
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 63.0 bits (154), Expect = 4e-11
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 85 DPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSD-PMIVGHEASGIVSKVGAKVKHLK 143
+ +V ++ G+C SD+H + D+ S P++ GHE G V++VG+KVK +
Sbjct: 38 ATGEEDVRFKVLYCGVCHSDLHSIK----NDWGFSMYPLVPGHEIVGEVTEVGSKVKKVN 93
Query: 144 A-TRPG-GCLV 152
+ G GCLV
Sbjct: 94 VGDKVGVGCLV 104
Score = 57.6 bits (140), Expect = 2e-09
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSD-PMIVGHEASGIVSKVGAKVKHLKV 50
++C G+C SD+H + D+ S P++ GHE G V++VG+KVK + V
Sbjct: 49 LYC-GVCHSDLHSIK----NDWGFSMYPLVPGHEIVGEVTEVGSKVKKVNV 94
Score = 56.4 bits (137), Expect = 6e-09
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 244 CRTCTYCKEGRYNLCRQIFF--CATPPD----HGNLSRYYRHAADFCHKLPDHVSLEEGA 297
C +C C N C ++ + D +G S + + + PD++ L+ GA
Sbjct: 107 CHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGA 166
Query: 298 -LL-------EPLSVGVHACRRAGVTL-GSKVLITGAGPIGLVTLLTARALGASRVVITD 348
LL PL + G+ G + I G G +G V + A+A G+ VI+
Sbjct: 167 PLLCAGITVYSPL-------KYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVIST 219
Query: 349 ILEHKLKTAKEMGADATVL 367
K + K GAD+ ++
Sbjct: 220 SPSKKEEALKNFGADSFLV 238
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 61.1 bits (148), Expect = 2e-10
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 9/121 (7%)
Query: 281 ADFCHKLPDHVSLEEGA--LLEPLSVGVHACRRAGVTLGSKVLITG-AGPIGLVTLLTAR 337
AD C LP+ + +GA + PL+ + + S ++ T A +G +
Sbjct: 135 ADQCLVLPEGATPADGASSFVNPLTA-LGMVETMRLEGHSALVHTAAASNLGQMLNQICL 193
Query: 338 ALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCS 397
G ++V + + K GA N + + E L D +
Sbjct: 194 KDGI-KLVNIVRKQEQADLLKAQGAVHVC----NAASPTFMQDLTEALVSTGATIAFDAT 248
Query: 398 G 398
G
Sbjct: 249 G 249
Score = 39.5 bits (92), Expect = 0.002
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 32/104 (30%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLT--------------------------HGQ 112
+ P EVL+ + + SD+ L +
Sbjct: 23 DSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMR 82
Query: 113 IGDFRLSDPMIVGHEASGIVSKVGAKVKHLK------ATRPGGC 150
RL M VG+E +G+V + G+ A G
Sbjct: 83 SMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIGGAM 126
Score = 32.6 bits (74), Expect = 0.22
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 23 RLSDPMIVGHEASGIVSKVGAKVKHLKV 50
RL M VG+E +G+V + G+ +
Sbjct: 87 RLDASMPVGNEGAGVVVEAGSSPAAQAL 114
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 60.3 bits (147), Expect = 3e-10
Identities = 33/140 (23%), Positives = 47/140 (33%), Gaps = 24/140 (17%)
Query: 244 CRTCTYCKEGRYNLCRQ-------IFFCATPPDHGNLSRYYRHAADFCHKLPDHVSLEEG 296
C+ C C++G N C G S+ + ++
Sbjct: 113 CKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAA 172
Query: 297 A--LL-------EPLSVGVHACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVIT 347
LL PL R G KV + G G +G + + A A+GA V T
Sbjct: 173 VAPLLCAGITTYSPL-------RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFT 225
Query: 348 DILEHKLKTAKEMGADATVL 367
E K + AK +GAD V
Sbjct: 226 -TSEAKREAAKALGADEVVN 244
Score = 56.9 bits (138), Expect = 4e-09
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 85 DPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKA 144
+P ++V +E+ G+C SD+H + + P + GHE G V VG +V+
Sbjct: 44 EPGPNDVKIEIAYCGVCHSDLHQV-RSEWAGTVY--PCVPGHEIVGRVVAVGDQVEKYAP 100
Query: 145 -TRPG-GCLV 152
G GC+V
Sbjct: 101 GDLVGVGCIV 110
Score = 51.1 bits (123), Expect = 2e-07
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+C G+C SD+H + + P + GHE G V VG +V+
Sbjct: 55 AYC-GVCHSDLHQV-RSEWAGTVY--PCVPGHEIVGRVVAVGDQVEKYAP 100
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 57.6 bits (140), Expect = 2e-09
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 85 DPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKA 144
+ +V + + C GIC +D+H + G PM+ GHE G V +VG+ V
Sbjct: 31 ETGPEDVNIRIICCGICHTDLHQTKNDL-GMSNY--PMVPGHEVVGEVVEVGSDVSKFTV 87
Query: 145 -TRPG-GCLV 152
G GCLV
Sbjct: 88 GDIVGVGCLV 97
Score = 57.6 bits (140), Expect = 2e-09
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 244 CRTCTYCKEGRYNLCRQIFF--CATPPD----HGNLSRYYRHAADFCHKLPDHVSLEEGA 297
C C+ C+ C + + + G ++ F K+P+ +++E+ A
Sbjct: 100 CGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAA 159
Query: 298 -LL-------EPLSVGVHACRRAGVTL-GSKVLITGAGPIGLVTLLTARALGASRVVITD 348
LL PL G+ G + I G G +G + + A+A+G VI+
Sbjct: 160 PLLCAGVTVYSPL-------SHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISS 212
Query: 349 ILEHKLKTAKEMGADATVL 367
+ + + +++GAD V+
Sbjct: 213 SNKKREEALQDLGADDYVI 231
Score = 51.8 bits (125), Expect = 1e-07
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 1 MHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+ C GIC +D+H + G PM+ GHE G V +VG+ V V
Sbjct: 42 ICC-GICHTDLHQTKNDL-GMSNY--PMVPGHEVVGEVVEVGSDVSKFTV 87
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 57.2 bits (139), Expect = 2e-09
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 281 ADFCHKLPDHVSLEEGA-LLEPLSVGVHACRRAGVTLGSKVLITG-AGPIGLVTLLTARA 338
LP+ +S EE A A +RA G KVL+ AG +G + ARA
Sbjct: 89 KGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARA 148
Query: 339 LGASRVVITDILEHKLKTAKEMGADATV 366
+G RV+ KL +GA+
Sbjct: 149 MGL-RVLAAASRPEKLALPLALGAEEAA 175
Score = 36.4 bits (85), Expect = 0.014
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 11/87 (12%)
Query: 140 KHLKATRPGGCLVIVG-AGSQDVKIPLVLTMTKEIDIRGVF-RYANDYPIALAMV----- 192
+ L GG LV +G A + IP + M + + + G + +
Sbjct: 203 ESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLL 262
Query: 193 --ASGKVDVKKLITHNYLLEDTLHAFE 217
++ ++ + + AF
Sbjct: 263 PRLGRELRP--VVGPVFPFAEAEAAFR 287
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 57.3 bits (139), Expect = 3e-09
Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 281 ADFCHKLPDHVSLEEGA--LLEPLSVGVHACRRAGVTLGSKVLITGA-GPIGLVTLLTAR 337
A C L D V E+GA ++ PL+ + ++T + + + A+
Sbjct: 128 AAACIPLLDTVRDEDGAAMIVNPLTA-IAMFDIVKQEGEKAFVMTAGASQLCKLIIGLAK 186
Query: 338 ALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCS 397
G R ++T + ++ K++GA + N + + E+++ EQP +D
Sbjct: 187 EEGF-RPIVTVRRDEQIALLKDIGAAHVL----NEKAPDFEATLREVMKAEQPRIFLDAV 241
Query: 398 G 398
Sbjct: 242 T 242
Score = 35.3 bits (82), Expect = 0.031
Identities = 10/91 (10%), Positives = 21/91 (23%), Gaps = 16/91 (17%)
Query: 135 VGAKV--KHLKATRPGGCLVIVGAGSQDVK--IPLVLTMTKEIDIRGVF--RYANDYPIA 188
V + A +I G D + + I G + + +
Sbjct: 241 VTGPLASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEWMRQFKER 300
Query: 189 LA--------MVASGKVDVKKLITHNYLLED 211
+ G+ +T L +
Sbjct: 301 RGPAILEAQKRFSDGRWST--DVTAVVPLAE 329
Score = 32.2 bits (74), Expect = 0.31
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 16/99 (16%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIV------ 132
+ + P +VL++++ I SDV ++ GQ G G E G +
Sbjct: 40 GRIAVPAPGPSQVLIKVNLASINPSDVAFIK-GQYG-QPRVKGRPAGFEGVGTIVAGGDE 97
Query: 133 ----SKVGAKVKHLKATRPGGC---LVIVGAGSQDVKIP 164
S VG +V G + A + +
Sbjct: 98 PYAKSLVGKRVAFATGLSNWGSWAEYAVAEAA-ACIPLL 135
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 56.0 bits (136), Expect = 6e-09
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 10/122 (8%)
Query: 281 ADFCHKLPDHVSLEEGALLEPLSVG-VHAC--RRAGVTLGSKVLITGA-GPIGLVTLLTA 336
+KLP+ + ++GA + + + A V G VL+ GA G +GL A
Sbjct: 133 DHTVYKLPEKLDFKQGAAI-GIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIA 191
Query: 337 RALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDC 396
RA G +++ T E K + GA NH I + + + D I+
Sbjct: 192 RAYGL-KILGTAGTEEGQKIVLQNGAHEVF----NHREVNYIDKIKKYVGEKGIDIIIEM 246
Query: 397 SG 398
Sbjct: 247 LA 248
Score = 41.0 bits (97), Expect = 4e-04
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 135 VGAKV--KHLKATRPGGCLVIVGAGSQDVKIPLVLTMTKEIDIRGVFRYA--NDYPIALA 190
+ K L GG +++VG+ ++I TM KE I GV ++ + A
Sbjct: 247 LANVNLSKDLSLLSHGGRVIVVGSRGT-IEINPRDTMAKESSIIGVTLFSSTKEEFQQYA 305
Query: 191 -----MVASGKVDVKKLITHNYLLEDTLHAFE 217
+ G + +I Y LE A E
Sbjct: 306 AALQAGMEIGWLKP--VIGSQYPLEKVAEAHE 335
Score = 38.7 bits (91), Expect = 0.002
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 19/87 (21%)
Query: 75 LRFREQKPIEDPDDHEVLLEMHCVGICGSDV-----HYLTHGQIGDFRLSDPMIVGHEAS 129
L+ R + P DH+VL+++H G+ + Y + P G + +
Sbjct: 44 LKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTY-------SRKPLLPYTPGSDVA 96
Query: 130 GIVSKVGAKVKHLK-------ATRPGG 149
G++ VG K ++ G
Sbjct: 97 GVIEAVGDNASAFKKGDRVFTSSTISG 123
Score = 33.3 bits (77), Expect = 0.11
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 27 PMIVGHEASGIVSKVGAKVKHLKV 50
P G + +G++ VG K
Sbjct: 88 PYTPGSDVAGVIEAVGDNASAFKK 111
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 54.5 bits (132), Expect = 2e-08
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 281 ADFCHKLPDHVSLEEGALLEPLSVG-VHAC--RRAGVTLGSKVLITGA-GPIGLVTLLTA 336
P + E L + ++ RR + G VL+ GA G IG + A
Sbjct: 122 PSNILPTPPQLDDAEAVAL-IANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIA 180
Query: 337 RALGASRVVITDILEHKLKTAKEMGADATV 366
+ +GA +V+ + K +GAD +
Sbjct: 181 KGMGA-KVIAVVNRTAATEFVKSVGADIVL 209
Score = 42.2 bits (100), Expect = 2e-04
Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 16/96 (16%)
Query: 135 VGAKV--KHLKATRPGGCLVIVGAGSQDV-KIPLVLTMTKEIDIRGVF--RYANDYPIAL 189
+G ++ G L++VG + + I + + + + GV + + L
Sbjct: 235 IGGPAFDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTHADYL 294
Query: 190 A--------MVASGKVDVKKLITHNYLLEDTLHAFE 217
+VA G ++ ++ L + A +
Sbjct: 295 YETQAGLEKLVAEG---MRPPVSARIPLSEGRQALQ 327
Score = 31.4 bits (72), Expect = 0.46
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 13/95 (13%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAK 138
+ V++++ G+C D +T G+ ++ P + G E +G+V
Sbjct: 39 TDVETPGAGPNVVVVDVKAAGVCFPDY-LMTKGEY-QLKMEPPFVPGIETAGVVRSAPE- 95
Query: 139 VKHLK------ATRPGGCL---VIVGAGSQDVKIP 164
+K A G V V + P
Sbjct: 96 GSGIKPGDRVMAFNFIGGYAERVAVAPS-NILPTP 129
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 53.4 bits (129), Expect = 5e-08
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 8/121 (6%)
Query: 281 ADFCHKLPDHVSLEEGA--LLEPLSVGVHACRRAGVTLGSKVLITGA-GPIGLVTLLTAR 337
ADF +PD + A + PL+ V + +L+ IG + ++
Sbjct: 107 ADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQ 166
Query: 338 ALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCS 397
L R++ + +GA + + S + ++EL G D ID
Sbjct: 167 ILNF-RLIAVTRNNKHTEELLRLGAAYVI----DTSTAPLYETVMELTNGIGADAAIDSI 221
Query: 398 G 398
G
Sbjct: 222 G 222
Score = 41.8 bits (99), Expect = 2e-04
Identities = 31/95 (32%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAK 138
E K IE D+EV + M I SD+ G R+ P I G+E GIV VGA
Sbjct: 23 EYKNIEPLKDNEVFVRMLVRPINPSDL-IPITGAYA-HRIPLPNIPGYEGVGIVENVGAF 80
Query: 139 VKHLK------ATRPGGC---LVIVGAGSQDVKIP 164
V R G V A V IP
Sbjct: 81 VSRELIGKRVLPLRGEGTWQEYVKTSAD-FVVPIP 114
Score = 34.1 bits (79), Expect = 0.075
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 27 PMIVGHEASGIVSKVGAKVKHLKV 50
P I G+E GIV VGA V +
Sbjct: 63 PNIPGYEGVGIVENVGAFVSRELI 86
Score = 31.8 bits (73), Expect = 0.35
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 16/111 (14%)
Query: 135 VGAKV--KHLKATRPGGCLVIVGAGSQDVKIPLVLTMTKEIDIRGVFRYANDYPIA---- 188
+G + + RP G + +G S +++ +TK +F +
Sbjct: 221 IGGPDGNELAFSLRPNGHFLTIGLLS-GIQVNWAEIVTKAKVHANIFHLRHWNDEVSPYK 279
Query: 189 --------LAMVASGKVDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMI 231
+ +V + ++ K + Y L D A + ++ KV +
Sbjct: 280 WQETFRHLIRLVENEQLRFMK-VHSTYELADVKAAVDVVQSAEKTKGKVFL 329
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 53.4 bits (129), Expect = 6e-08
Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 12/142 (8%)
Query: 264 CATPPDHGNLSRYYRHAADFCHKLPDHVSLEEGA--LLEPLSVGVHACRRAGVTLGSKVL 321
G + + ++P + L+ A + P + + G V+
Sbjct: 113 IPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVI 172
Query: 322 ITGA-GPIGLVTLLTARALGASRVVIT----DILEHKLKTAKEMGADATVLIDRNHSLEE 376
+ +G + A ALG R + ++ K +GA+ + + E
Sbjct: 173 QNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEM 231
Query: 377 ISTHIIELLQGEQPDKTIDCSG 398
+ QP ++C G
Sbjct: 232 KN----FFKDMPQPRLALNCVG 249
Score = 46.1 bits (110), Expect = 1e-05
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 142 LKATRPGGCLVIVG-AGSQDVKIPLVLTMTKEIDIRGVF--RYANDYPIA---------L 189
L+ GG +V G Q V + L + K++ +RG + ++ D+
Sbjct: 257 LRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLC 316
Query: 190 AMVASGKVDVKKLITHNYLLEDTLHAFETAKTG 222
++ G++ L+D A E +
Sbjct: 317 DLIRRGQLTA--PACSQVPLQDYQSALEASMKP 347
Score = 43.8 bits (104), Expect = 5e-05
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAK 138
+ + +V ++M I SD+ + G G P + G+E V VG+
Sbjct: 45 KNLELAAVRGSDVRVKMLAAPINPSDI-NMIQGNYG-LLPELPAVGGNEGVAQVVAVGSN 102
Query: 139 VKHLK 143
V LK
Sbjct: 103 VTGLK 107
Score = 34.6 bits (80), Expect = 0.051
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 27 PMIVGHEASGIVSKVGAKVKHLKV 50
P + G+E V VG+ V LK
Sbjct: 85 PAVGGNEGVAQVVAVGSNVTGLKP 108
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 49.5 bits (119), Expect = 7e-07
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 13/112 (11%)
Query: 261 IFFCATPPDHGNLSRYYRHAAD---FCHKLPDHVSLEEGALLEPLSVGV---HACRRAGV 314
+ + + HG+ + + + PD++S E A L P + A + +
Sbjct: 86 VAYHTSLKRHGSFAEF--TVLNTDRVMTL-PDNLSFERAAAL-PC-PLLTAWQAFEKIPL 140
Query: 315 TLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADATV 366
T +VLI G G + + G VV A + G
Sbjct: 141 TKQREVLIVGFGAVNNLLTQMLNNAGY--VVDLVSASLSQALAAKRGVRHLY 190
Score = 38.7 bits (91), Expect = 0.003
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 11/89 (12%)
Query: 74 SLRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVS 133
S+ I ++L++ +GI D ++ + G + +G++
Sbjct: 16 SVTLNSV-DIPALAADDILVQNQAIGINPVDWK-FIKANPINWSN--GHVPGVDGAGVIV 71
Query: 134 KVGAKVKHLKATRPG----GCLVIVGAGS 158
KVGAKV G + GS
Sbjct: 72 KVGAKVDSKM---LGRRVAYHTSLKRHGS 97
Score = 34.1 bits (79), Expect = 0.063
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 20 GDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
S+ + G + +G++ KVGAKV +
Sbjct: 52 NPINWSNGHVPGVDGAGVIVKVGAKVDSKML 82
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 48.5 bits (116), Expect = 2e-06
Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 17/112 (15%)
Query: 135 VGAKV--KHLKATRPGGCLVIVG-AGSQDVKIPLVLTMTKEIDIRGVF--RYANDYPIA- 188
VG K + G ++ G Q V IP L + K G + +
Sbjct: 253 VGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELK 312
Query: 189 -------LAMVASGKVDVKKLITHNYLLEDTLHAFETAKTGAGNAI--KVMI 231
+A GK + + L + T E + G N+ K +I
Sbjct: 313 TSTLNQIIAWYEEGK--LTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLI 362
Score = 43.5 bits (103), Expect = 7e-05
Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 22/145 (15%)
Query: 269 DHGNLSRYYRHAADFCHKLPDHVSLEEGALLEPLSVGVHAC-------RRAGVTLGSKVL 321
+ + + A + P+ +++ +GA ++ V+ +T G
Sbjct: 117 NDDDFIKLPNPAQSKANGKPNGLTINQGA-----TISVNPLTAYLMLTHYVKLTPGKDWF 171
Query: 322 ITGA--GPIGLVTLLTARALGASRVVIT----DILEHKLKTAKEMGADATVLIDRNHSLE 375
I +G + L + L+ + + KE+GA V+ + ++
Sbjct: 172 IQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ-VITEDQNNSR 229
Query: 376 EISTHIIELLQ--GEQPDKTIDCSG 398
E I E ++ G + ++C G
Sbjct: 230 EFGPTIKEWIKQSGGEAKLALNCVG 254
Score = 42.8 bits (101), Expect = 1e-04
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 82 PIEDPDDHEVLLEMHCVGICGSDVHYLTHGQ--------IGDFRLSDPMIVGHEASGIVS 133
++ +EV+++ + SD+ G G G+E V
Sbjct: 27 DDDNLAPNEVIVKTLGSPVNPSDI-NQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVI 85
Query: 134 KVGAKVKHLK 143
KVG+ V L+
Sbjct: 86 KVGSNVSSLE 95
Score = 35.4 bits (82), Expect = 0.027
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 27 PMIVGHEASGIVSKVGAKVKHLKV 50
G+E V KVG+ V L+
Sbjct: 73 AAPCGNEGLFEVIKVGSNVSSLEA 96
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 48.0 bits (115), Expect = 3e-06
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 281 ADFCHKLPDHVSLEEGA--LLEPLSVGVHACRRAGVTLGSKVLITG-AGPIGLVTLLTAR 337
AD LP +S E+ A L+ L+V + + + L AG +GL+ A+
Sbjct: 103 ADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAK 162
Query: 338 ALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDCS 397
ALGA +++ T K ++A + GA + N+ E++ + E+ G++ D
Sbjct: 163 ALGA-KLIGTVGTAQKAQSALKAGAWQVI----NYREEDLVERLKEITGGKKVRVVYDSV 217
Query: 398 G-------IESTIKLGML 408
G ++ + G++
Sbjct: 218 GRDTWERSLDCLQRRGLM 235
Score = 43.0 bits (102), Expect = 1e-04
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSD-PMIVGHEASGIVSKVGA 137
+ DP ++E+ +E +GI D + + G + P +G EA+GIVSKVG+
Sbjct: 19 VEFTPADPAENEIQVENKAIGINFIDTYIRS----GLYPPPSLPSGLGTEAAGIVSKVGS 74
Query: 138 KVKHLKA-TRPGGCLVIVGAGSQDVKIP 164
VKH+KA R +GA S I
Sbjct: 75 GVKHIKAGDRVVYAQSALGAYSSVHNII 102
Score = 36.8 bits (86), Expect = 0.010
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 27 PMIVGHEASGIVSKVGAKVKHLKV 50
P +G EA+GIVSKVG+ VKH+K
Sbjct: 58 PSGLGTEAAGIVSKVGSGVKHIKA 81
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 47.6 bits (114), Expect = 3e-06
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 281 ADFCHKLPDHVSLEEGALLEPLSVG-VHAC--RRAGVTLGSKVLITG-AGPIGLVTLLTA 336
+F +K+PD +S E A P++ + A + G VL+ G +G
Sbjct: 105 VEFVYKIPDDMSFSEAAAF-PMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLC 163
Query: 337 RALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEE 376
+ V K + K+ L DRN +
Sbjct: 164 STVPN-VTVFGTASTFKHEAIKDSVTH---LFDRNADYVQ 199
Score = 37.2 bits (87), Expect = 0.006
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAK 138
+K + +P D E+ + + G+ D+ + G I D P++ G E SGIV +G
Sbjct: 21 FRKAMPEPQDGELKIRVKACGLNFIDL-MVRQGNI-DNPPKTPLVPGFECSGIVEALGDS 78
Query: 139 VKHLK 143
VK +
Sbjct: 79 VKGYE 83
Score = 32.2 bits (74), Expect = 0.29
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 27 PMIVGHEASGIVSKVGAKVKHLKV 50
P++ G E SGIV +G VK ++
Sbjct: 61 PLVPGFECSGIVEALGDSVKGYEI 84
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 47.2 bits (113), Expect = 5e-06
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Query: 281 ADFCHKLPDHVSLEEGALLEPLSVG-VHAC--RRAGVTLGSKVLI-TGAGPIGLVTLLTA 336
+P+ ++L + A + P + V G VLI G +G +
Sbjct: 125 EGLLMPIPEGLTLTQAAAI-PEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLT 183
Query: 337 RALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTIDC 396
R GA ++T + KL+ A+++GA A N+ E+ S ++ +G + +DC
Sbjct: 184 RMAGA-IPLVTAGSQKKLQMAEKLGAAAGF----NYKKEDFSEATLKFTKGAGVNLILDC 238
Query: 397 SG 398
G
Sbjct: 239 IG 240
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 46.8 bits (112), Expect = 6e-06
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 281 ADFCHKLPDHVSLEEGA--LLEPLSVGVHACRRAGVTLGSKVLITG-AGPIGLVTLLT-- 335
KL D VS E+ A +L+ L+V + V G +L AG +G L
Sbjct: 103 EANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGS--LACQW 160
Query: 336 ARALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDKTID 395
A+ALGA +++ T K AK +GA T+ ++S E+++ ++EL G++ D
Sbjct: 161 AKALGA-KLIGTVSSPEKAAHAKALGAWETI----DYSHEDVAKRVLELTDGKKCPVVYD 215
Query: 396 CSG 398
G
Sbjct: 216 GVG 218
Score = 42.6 bits (101), Expect = 1e-04
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSD-PMIVGHEASGIVSKVGA 137
E P V++ +G+ D +Y + G + P +G E +G+V VG
Sbjct: 19 VDFEPEAPGPQAVVVRNKAIGLNFIDTYYRS----GLYPAPFLPSGLGAEGAGVVEAVGD 74
Query: 138 KVKHLKA-TRPGGCLVIVGAGSQDVKIP 164
+V K R +GA S+ +P
Sbjct: 75 EVTRFKVGDRVAYGTGPLGAYSEVHVLP 102
Score = 36.8 bits (86), Expect = 0.010
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 27 PMIVGHEASGIVSKVGAKVKHLKV 50
P +G E +G+V VG +V KV
Sbjct: 58 PSGLGAEGAGVVEAVGDEVTRFKV 81
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 45.9 bits (109), Expect = 2e-05
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 74 SLRFREQ-KPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIV 132
L ++ D EV + M G+ D + G +G E +G+V
Sbjct: 223 GLALVDEPTATAPLGDGEVRIAMRAAGVNFRDA-LIALGM-----YPGVASLGSEGAGVV 276
Query: 133 SKVGAKVKHLK 143
+ G V L
Sbjct: 277 VETGPGVTGLA 287
Score = 40.5 bits (95), Expect = 0.001
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 271 GNLSRYYRHAADFCHKLPDHVSLEEGA-LLEPLSVGVHA-CRRAGVTLGSKVLI-TGAGP 327
++P S A + +A AG+ G +L+ + AG
Sbjct: 298 KAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGG 357
Query: 328 IGLVTLLTARALGA 341
+G+ + AR LGA
Sbjct: 358 VGMAAIQLARHLGA 371
Score = 35.9 bits (83), Expect = 0.025
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 23 RLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+G E +G+V + G V L
Sbjct: 261 MYPGVASLGSEGAGVVVETGPGVTGLAP 288
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 45.1 bits (107), Expect = 2e-05
Identities = 31/160 (19%), Positives = 47/160 (29%), Gaps = 24/160 (15%)
Query: 262 FFCATPPDHGNLSRYYRHAADFCHKLPDHVSLEEGALLEPLSV---------------GV 306
C PD G S+Y K+P +S E+ A L P +
Sbjct: 96 EMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAAL-PAGISTAGLAMKLLGLPLPSP 154
Query: 307 HACRRAGVTLGSKVLITG-AGPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADAT 365
A + + VL+ G + VT+ R G I H AK GA+
Sbjct: 155 SADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYI--PIATCSPHNFDLAKSRGAEEV 212
Query: 366 VLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIESTIKL 405
D ++ I + +DC +
Sbjct: 213 --FDYRA--PNLAQTIRTYTKNN-LRYALDCITNVESTTF 247
Score = 43.2 bits (102), Expect = 1e-04
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 82 PIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKH 141
P +V + + V I SD + + +G + +G V VG+ V H
Sbjct: 30 PCPMLPRDQVYVRVEAVAINPSDTS------MRGQFATPWAFLGTDYAGTVVAVGSDVTH 83
Query: 142 LK 143
++
Sbjct: 84 IQ 85
Score = 35.8 bits (83), Expect = 0.021
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 21 DFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
+ +G + +G V VG+ V H++V
Sbjct: 57 GQFATPWAFLGTDYAGTVVAVGSDVTHIQV 86
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 44.9 bits (107), Expect = 3e-05
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 75 LRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSK 134
+ E + P +V L +G+ D ++ P++VG EA+ +V +
Sbjct: 16 FVWEEV-KVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEE 74
Query: 135 VGAKVKHLKA-TRPGGCLVIVGAGSQDVKIP 164
VG V R CL +GA SQ+ P
Sbjct: 75 VGPGVTDFTVGERVCTCLPPLGAYSQERLYP 105
Score = 41.8 bits (99), Expect = 2e-04
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 281 ADFCHKLPDHVSLEE----GALLEPLSVGVHACRRAGVTLGSKVLIT-GAGPIGLVTLLT 335
A+ K+P + L++ G +L+ ++ + V G VLI AG +G ++
Sbjct: 106 AEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGH--IMV 163
Query: 336 --ARALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGE 388
AR LGA V+ T E K +TA+++G T+ N+S ++ + + E+ G+
Sbjct: 164 PWARHLGA-TVIGTVSTEEKAETARKLGCHHTI----NYSTQDFAEVVREITGGK 213
Score = 36.4 bits (85), Expect = 0.012
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 27 PMIVGHEASGIVSKVGAKVKHLKV 50
P++VG EA+ +V +VG V V
Sbjct: 61 PIVVGFEAAAVVEEVGPGVTDFTV 84
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 44.9 bits (107), Expect = 3e-05
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 281 ADFCHKLPDHVSLEEGALLEPLSVG-VHAC--RRAGVTLGSKVLI-TGAGPIGLVTLLTA 336
A P + A L P + V A + AG+T G VLI G IG + A
Sbjct: 130 AGQILPFPKGYDAVKAAAL-PETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLA 188
Query: 337 RALGASRVVITDILEHKLKTAKEMGADATV 366
RA GA V T K + + +GA +
Sbjct: 189 RAFGA-EVYATAGSTGKCEACERLGAKRGI 217
Score = 31.8 bits (73), Expect = 0.34
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 12/70 (17%)
Query: 79 EQKPIEDPDDHEVLLEMHCVGICGSDV-----HYLTHGQIGDFRLSDPMIVGHEASGIVS 133
++P+ + EVL+ +G+ D+ Y I+G E SG +
Sbjct: 46 GKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSY-------PPPKDASPILGLELSGEIV 98
Query: 134 KVGAKVKHLK 143
VG V
Sbjct: 99 GVGPGVSGYA 108
Score = 29.9 bits (68), Expect = 1.4
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 135 VGAKV--KHLKATRPGGCLVIVG--AGSQDVKIPLVLTMTKEIDIRGVF--RYANDYPIA 188
+GA +++ + GCL I+ G+ K+ L M K + + G + A
Sbjct: 243 IGAAYFERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRA 302
Query: 189 LA---------MVASGKV 197
+ ++ +G V
Sbjct: 303 IRDDLLSEVWPLLEAGTV 320
Score = 29.1 bits (66), Expect = 2.6
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 27 PMIVGHEASGIVSKVGAKVKHLKV 50
I+G E SG + VG V V
Sbjct: 86 SPILGLELSGEIVGVGPGVSGYAV 109
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 44.9 bits (107), Expect = 3e-05
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 75 LRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSK 134
+++ + P+ + E+L++ G+ + ++ G + P ++G EASG V
Sbjct: 23 IKYEDY-PVPSISEEELLIKNKYTGVNYIESYFRK----GIYPCEKPYVLGREASGTVVA 77
Query: 135 VGAKVKHLK 143
G V + +
Sbjct: 78 KGKGVTNFE 86
Score = 42.6 bits (101), Expect = 1e-04
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 11/126 (8%)
Query: 279 HAADFCHKLPDHVSLEE-----GALLEPLSVGVHACRRAGVTLGSKVLITG-AGPIGLVT 332
+ KLP S EE LL+ L+ V G VL+ AG +GL+
Sbjct: 106 SSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLIL 165
Query: 333 LLTARALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIELLQGEQPDK 392
+ GA + + KLK AKE GA+ + N S E+I +++ G+ D
Sbjct: 166 NQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLI----NASKEDILRQVLKFTNGKGVDA 220
Query: 393 TIDCSG 398
+ D G
Sbjct: 221 SFDSVG 226
Score = 36.8 bits (86), Expect = 0.009
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 27 PMIVGHEASGIVSKVGAKVKHLKV 50
P ++G EASG V G V + +V
Sbjct: 64 PYVLGREASGTVVAKGKGVTNFEV 87
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 44.6 bits (106), Expect = 3e-05
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 281 ADFCHKLPDHVSLEEGALLEPL---SVGVHACRRAGVTLGSKVLITGA-GPIGLVTLLTA 336
A +P E LL + + G++ G KVL+T A G G + +
Sbjct: 128 ASIATPVPSVKP-EYLTLLVSGTTAYISLK--ELGGLSEGKKVLVTAAAGGTGQFAMQLS 184
Query: 337 RALGASRVVITDILEHKLKTAKEMGADATV 366
+ V+ T + K K +G D +
Sbjct: 185 KKAKC-HVIGTCSSDEKSAFLKSLGCDRPI 213
Score = 33.0 bits (76), Expect = 0.15
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 74 SLRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLS--DPMIVGHEASGI 131
++ P+ P D ++L+ VG+ SD++Y G + S P +G E G
Sbjct: 39 AVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSA----GRYDPSVKPPFDIGFEGIGE 94
Query: 132 VSKVGAKVKHLKA 144
V +G
Sbjct: 95 VVALGLSASARYT 107
Score = 33.0 bits (76), Expect = 0.16
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 24/107 (22%)
Query: 135 VGAKV--KHLKATRPGGCLVIVGAGSQDV----------KIPLVLTMTKEIDIRG--VFR 180
VG + + A G L+++G S + K ++G +
Sbjct: 239 VGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNH 298
Query: 181 YANDYPIALA----MVASGKVDVK------KLITHNYLLEDTLHAFE 217
Y + Y A++ M SG + + LE A
Sbjct: 299 YLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVN 345
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 44.2 bits (104), Expect = 4e-05
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 291 VSLEEGALLEPLSVGVHACRRAGVTL-GSKVLITGAGPIGLVTLLTARALGASRVVITDI 349
+ EG ++ A + T+ G+ V + G G +G+ ALGA +V +
Sbjct: 135 IPTAEGTIMM-------AIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGAR 186
Query: 350 LEHKLKTAKEMGADATVLIDRNHSLEEI 377
L EMG + + L ++
Sbjct: 187 ESDLLARIAEMGMEPFHISKAAQELRDV 214
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 43.3 bits (103), Expect = 4e-05
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 281 ADFCHKLPDHVSLEEGALLEPLSVGV------HA-CRRAGVTLGSKVLI-TGAGPIGLVT 332
+D +PD ++ E A + GV H+ C ++ G +VLI + G +G+
Sbjct: 1 SDLVVPIPDTLADNEAA-----TFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAA 55
Query: 333 LLTARALGASRVVITDILEHKLKTAKEMGAD 363
+ A+ +GA R+ T + K + +G +
Sbjct: 56 VSIAKMIGA-RIYTTAGSDAKREMLSRLGVE 85
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 43.6 bits (103), Expect = 6e-05
Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 11/135 (8%)
Query: 252 EGRYNLCRQIFFCATPPDH----GNLSRYYRHAADFCH-KLPDHVSLEEGALLEPLSVGV 306
+ +Q TP G + Y + A KL ++ A+ +
Sbjct: 82 SNEEVVLKQDHLDRTPAHCVIFSGISNAYLENIAAQAKRKLVKLFERDDIAIYNSIPTVE 141
Query: 307 HACRRA----GVTL-GSKVLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAKEMG 361
A T+ GS+V + G G G+ T ALGA V + L EMG
Sbjct: 142 GTIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMG 200
Query: 362 ADATVLIDRNHSLEE 376
+ +++
Sbjct: 201 LVPFHTDELKEHVKD 215
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 42.2 bits (100), Expect = 2e-04
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 279 HAADFCHKLPDHVSLEEGALLEPLSVGV---HACRRAGVTLGSKVLITG-AGPIGLVTLL 334
K + +S + A L P G+ A +A V G VLI AG +G + +
Sbjct: 115 SPDTIIQK-LEKLSFLQAASL-PT-AGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQ 171
Query: 335 TARALGASRVVITDILEHKLKTAKEMGADATV 366
A+ G + VIT + K +GA+ +
Sbjct: 172 LAKQKGTT--VITTASKRNHAFLKALGAEQCI 201
Score = 40.6 bits (96), Expect = 5e-04
Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 75 LRFREQKPIEDPDDHEVLLEMHCVGICGSDVH----YLTHGQIGDFRLSDPMIVGHEASG 130
L+ + P + +++L+++H + D + L P +G++ SG
Sbjct: 21 LKLVDT-PTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL--PSGLGYDFSG 77
Query: 131 IVSKVGAKVKHLK 143
V ++G+ V ++
Sbjct: 78 EVIELGSDVNNVN 90
Score = 34.1 bits (79), Expect = 0.060
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 27 PMIVGHEASGIVSKVGAKVKHLKV 50
P +G++ SG V ++G+ V ++ +
Sbjct: 68 PSGLGYDFSGEVIELGSDVNNVNI 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 2e-04
Identities = 50/295 (16%), Positives = 77/295 (26%), Gaps = 95/295 (32%)
Query: 189 LAMVASGKVDVKKLITHNYLLEDTLHAFETAKTGAGNAIKVMIHCDRVA-----IEPGVP 243
L V+S V+ K+ + +L L FE + IH +A
Sbjct: 65 LGYVSS-LVEPSKVGQFDQVLNLCLTEFENCYLEGND-----IHA--LAAKLLQENDTTL 116
Query: 244 CRTCTYCK---EGRYNLCRQI-------FFCATPPDH----------GNLSRY------- 276
+T K R R F A + GN Y
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 277 ---YRH-AADFCHKLPDHVSLEEGALLEPLSVGVHACRRA---GVTLGS----------- 318
Y D L L + G+ +
Sbjct: 177 YQTYHVLVGDLIKFS--------AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 319 KVLITGA--GP-IGLVTL----LTARALGASRVVITDILEHKLKTAKEMGAD--ATVLI- 368
L++ P IG++ L +TA+ LG + L LK A V I
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFT----PGELRSYLKGATGHSQGLVTAVAIA 284
Query: 369 --DRNHSLEEISTHIIELL-------QGEQPDKTIDCSGIESTIKLG------ML 408
D S I +L P+ ++ S +E +++ ML
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Score = 34.3 bits (78), Expect = 0.085
Identities = 61/376 (16%), Positives = 108/376 (28%), Gaps = 149/376 (39%)
Query: 83 IEDPD---DHEVLL--EMHCVGICGSD-VHY--------LTHGQIGDFRLSDPMIVGHEA 128
+E+P D + LL + C I HY T G++ L GH +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS-YLKG--ATGH-S 274
Query: 129 SGIVSKV------------GAKVKHLKATRPGGCLVIVGAGSQDV--KIPLVLTMTKE-I 173
G+V+ V + K + L +G + L ++ ++ +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITV------LFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 174 D-----------IRGVFR--------YANDY-P------IAL-----AMVASGKVDVKKL 202
+ I + + N + P I+L +V SG + L
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG--PPQSL 386
Query: 203 ITHNYLLEDTLHAFETAKTGAGNAIKVMIHCDRVAIEPGVPCRTCTYCKEGRYNLCRQIF 262
Y L TL K D+ I + + R++
Sbjct: 387 ----YGLNLTLRK-----------AKAPSGLDQSRIP---------FSE-------RKLK 415
Query: 263 FCA-----TPPDHGNLSRYYRHAADFCHK--LPDHVSLEEGALLEP-------------- 301
F P H S A+D +K + ++VS + P
Sbjct: 416 FSNRFLPVASPFH---SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 302 -----------LSVGVH--ACRRAGVTLGSKVLITGAGPIGLVTLLTARAL---GASRVV 345
+ + V + T +L G G + +LT R G RV+
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKAT---HILDFGPGGASGLGVLTHRNKDGTGV-RVI 528
Query: 346 ITDILEHKLKTAKEMG 361
+ L+ + + G
Sbjct: 529 VAGTLD--INPDDDYG 542
Score = 31.6 bits (71), Expect = 0.58
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 39/101 (38%)
Query: 322 ITGAGPIGLVTLLTA---RALGASRVVITDILEHKLKTAKEMGADATVLIDRN-----HS 373
T GL++ T AL + L K G LI + HS
Sbjct: 1717 YTFRSEKGLLSA-TQFTQPALTLMEKAAFEDL-------KSKG-----LIPADATFAGHS 1763
Query: 374 LEEIS--THIIELLQGEQPDKTIDCSGIESTIKL----GML 408
L E + + +++ IES +++ GM
Sbjct: 1764 LGEYAALASLADVMS------------IESLVEVVFYRGMT 1792
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 41.5 bits (98), Expect = 3e-04
Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 20/130 (15%)
Query: 260 QIFFCATPPDHGNLSRYYRHAAD---FCHKLPDHVSLEEGALLEPLSVGVHA----CRRA 312
++F+ + G + + H D K P + E A L PL + A R
Sbjct: 108 EVFYAGSIIRPGTNAEF--HLVDERIVGRK-PKTLDWAEAAAL-PL-TSITAWEAFFDRL 162
Query: 313 GVT-----LGSKVLIT-GAGPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADATV 366
V +LI GAG +G + + AR V+ T + K +GA
Sbjct: 163 DVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHV- 221
Query: 367 LIDRNHSLEE 376
ID + L
Sbjct: 222 -IDHSKPLAA 230
Score = 34.6 bits (80), Expect = 0.045
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 74 SLRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVS 133
SL E P P H++L+E+ V + D + +D ++G++A+GIVS
Sbjct: 39 SLLDIEL-PKPAPAGHDILVEVKAVSVNPVDYK---VRRSTPPDGTDWKVIGYDAAGIVS 94
Query: 134 KVGAKVKHLKATRPG----GCLVIVGAGS 158
VG V + PG I+ G+
Sbjct: 95 AVGPDVTLFR---PGDEVFYAGSIIRPGT 120
Score = 32.7 bits (75), Expect = 0.18
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 26 DPMIVGHEASGIVSKVGAKVKHLKV 50
D ++G++A+GIVS VG V +
Sbjct: 81 DWKVIGYDAAGIVSAVGPDVTLFRP 105
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 41.1 bits (97), Expect = 5e-04
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 281 ADFCHKLPDHVSLEEGALLEPLSVGVHA----CRRAGVTLGSKVLIT-GAGPIGLVTLLT 335
A P +++ + ++L PL V + A RA V G VLI G G +G V +
Sbjct: 113 ARLLASKPAALTMRQASVL-PL-VFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQI 170
Query: 336 ARALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTH 380
A A GA V L+ +++GA + + + H
Sbjct: 171 ALARGAR--VFATARGSDLEYVRDLGAT--PIDASREPEDYAAEH 211
Score = 38.8 bits (91), Expect = 0.002
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 82 PIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKH 141
P +VL+++ G D + G+ + P I+G + +G V VG +V
Sbjct: 26 ARPQPAPGQVLVQIEASGTNPLDA-KIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDS 84
Query: 142 LKA-----TRPGGCLVIVGA 156
+ GG + G
Sbjct: 85 FRVGDAVFGLTGGVGGLQGT 104
Score = 33.0 bits (76), Expect = 0.15
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 17 GQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKV 50
G+ + P I+G + +G V VG +V +V
Sbjct: 54 GEAPHAQQPLPAILGMDLAGTVVAVGPEVDSFRV 87
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 40.5 bits (95), Expect = 7e-04
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 20/101 (19%)
Query: 75 LRFREQKPIEDP-DDHEVLLEMHCVGICGSDVH------------YLTHGQIGDFRLSDP 121
LRF + + +EV++++H + DV+ + P
Sbjct: 36 LRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFP 95
Query: 122 MIVGHEASGIVSKVGAKVKHLKATRPG----GCLVIVGAGS 158
+ +G + SG+V + G VK+ K PG + G+
Sbjct: 96 LTLGRDVSGVVMECGLDVKYFK---PGDEVWAAVPPWKQGT 133
Score = 37.4 bits (87), Expect = 0.006
Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 22/152 (14%)
Query: 260 QIFFCATPPDHGNLSRYYRHAADFCHKLPDHVSLEEGALLEPLSVGV--------HACRR 311
+++ P G LS + + + P ++ + A L P V +
Sbjct: 121 EVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASL-PY-VALTAWSAINKVGGLN 178
Query: 312 AGVTLGSKVLITGA-GPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADATVLID- 369
G +VLI GA G +G + +A A V + + +++GAD +ID
Sbjct: 179 DKNCTGKRVLILGASGGVGTFAIQVMKAWDAH--VTAVCSQDASELVRKLGAD--DVIDY 234
Query: 370 RNHSLEEISTHIIELLQGEQPDKTIDCSGIES 401
++ S+EE +L + D +D G +
Sbjct: 235 KSGSVEE------QLKSLKPFDFILDNVGGST 260
Score = 33.9 bits (78), Expect = 0.074
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 27 PMIVGHEASGIVSKVGAKVKHLKV 50
P+ +G + SG+V + G VK+ K
Sbjct: 95 PLTLGRDVSGVVMECGLDVKYFKP 118
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 38.6 bits (91), Expect = 0.002
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 319 KV-LITGAGP-IGLVTLLTARAL---GASRVVITDILEHKLK-TAKEMGADA 364
KV L+TG +GL + L GA +V +DI E + A E+G +
Sbjct: 7 KVALVTGGASGVGLEV---VKLLLGEGA-KVAFSDINEAAGQQLAAELGERS 54
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 37.9 bits (89), Expect = 0.004
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 316 LGSKV-LITGAGP-IGLVTLLTARAL---GASRVVITDILEHKLK-TAKEMGADAT 365
L K +ITG +G AR GA RVV+ D+L+ + TA+E+G A
Sbjct: 3 LSGKTVIITGGARGLGAEA---ARQAVAAGA-RVVLADVLDEEGAATARELGDAAR 54
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 37.9 bits (89), Expect = 0.004
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 319 KV-LITGAGP-IGLVTLLTARAL---GASRVVITDILEHKLK-TAKEMGADAT 365
KV L++G +G RA+ GA +VV DIL+ + K A E+ A
Sbjct: 8 KVALVSGGARGMGASH---VRAMVAEGA-KVVFGDILDEEGKAMAAELADAAR 56
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 37.7 bits (88), Expect = 0.005
Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 13/135 (9%)
Query: 270 HGNLSRYYRHAADFCHKLPDHVSLEEGALLEPLSVGVHACRRAGVTLG-----SKVLITG 324
G LS Y D+ LP ++SL+E + G VL+TG
Sbjct: 99 DGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTG 158
Query: 325 A-GPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIE 383
A G +G + + G V T E K++GA +I R E++ ++
Sbjct: 159 ATGGVGGIAVSMLNKRGYDVVASTGNREAA-DYLKQLGASE--VISR----EDVYDGTLK 211
Query: 384 LLQGEQPDKTIDCSG 398
L +Q +D G
Sbjct: 212 ALSKQQWQGAVDPVG 226
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 37.5 bits (88), Expect = 0.005
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 316 LGSKV-LITGAGP-IGLVTLLTARAL---GASRVVITDILEHKL-KTAKEMGADATVL 367
L +K+ +ITGA IGL A+ GA RV IT + L E+G A +
Sbjct: 27 LNAKIAVITGATSGIGLAA---AKRFVAEGA-RVFITGRRKDVLDAAIAEIGGGAVGI 80
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 36.3 bits (85), Expect = 0.011
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 317 GSKVLITGAGP-IGLVTLLTARAL---GASRVVITDILEHKLKTAKEMGADATVLID 369
G +++T A IG A A GA +V+ TDI E KL+ ++ T ++D
Sbjct: 6 GKVIILTAAAQGIGQAA---ALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLD 58
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 35.9 bits (84), Expect = 0.016
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 319 KV-LITGAGP-IGLVTLLTARAL---GASRVVITDILEHKLK-TAKEMGADATVL 367
KV +ITG IGL A GA +V+IT + AK +G +
Sbjct: 7 KVAIITGGTLGIGLAI---ATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQ 57
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 35.5 bits (83), Expect = 0.020
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 316 LGSKV-LITGAGP-IGLVTLLTARAL---GASRVVITDILEHKLKTAKEMGADA 364
K L+TG IG A+A GA V + D+ + A+ +G
Sbjct: 4 FAGKGVLVTGGARGIGRAI---AQAFAREGA-LVALCDLRPEGKEVAEAIGGAF 53
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 35.6 bits (83), Expect = 0.021
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 316 LGSKV-LITGAGP-IGLVTLLTARAL---GASRVVITDILEHKLKTAKEMGADA 364
KV ++TG G IG RA GA RVVI D E + ++ A
Sbjct: 7 YAGKVVVVTGGGRGIGAGI---VRAFVNSGA-RVVICDKDESGGRALEQELPGA 56
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 35.5 bits (81), Expect = 0.022
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 312 AGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADA 364
G + + G GP+ L +L + G RV + +I + ++++
Sbjct: 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGL 169
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 35.2 bits (82), Expect = 0.026
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 319 KV-LITGAGP-IGLVTLLTARAL---GASRVVITDILEHKLK-TAKEMGADATVL 367
KV +ITG IG T A+ GA +VVI DI + + +G+ +
Sbjct: 17 KVAIITGGAGGIGETT---AKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVIS 67
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 34.1 bits (79), Expect = 0.052
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 317 GSKVLITGAGP-IGLVTLLTARALGASRVVITDILEHKLK-TAKE---MGADATV 366
G VLITGAG IG +T L + ++V+ DI +H L+ TA + +GA
Sbjct: 31 GEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHT 84
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics,
protein structure initiative, MCSG; HET: DTY; 2.80A
{Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Length = 328
Score = 34.6 bits (80), Expect = 0.053
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 13/135 (9%)
Query: 270 HGNLSRYYRHAADFCHKLPDHVSLEEGALLEPLSV----GVHACRRAGVTLGS-KVLITG 324
G S Y R ++ LP ++L+E + +H G+T VL+TG
Sbjct: 98 FGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTG 157
Query: 325 A-GPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEISTHIIE 383
A G +G + + G + T + +GA ++ R E++ I
Sbjct: 158 ATGGVGSLAVSMLAKRGYTVEASTGKAAEH-DYLRVLGAKE--VLAR----EDVMAERIR 210
Query: 384 LLQGEQPDKTIDCSG 398
L ++ +D G
Sbjct: 211 PLDKQRWAAAVDPVG 225
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 34.1 bits (79), Expect = 0.064
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 319 KV-LITGAGP-IGLVTLLTARAL---GASRVVITDILEHKLKTAKEMGADAT 365
KV ++TGA IG A G+ +V+ I + + D T
Sbjct: 9 KVVIVTGASMGIGRAI---AERFVDEGS-KVIDLSIHDPGEAKYDHIECDVT 56
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 33.8 bits (77), Expect = 0.074
Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 16/96 (16%)
Query: 310 RRAGVTLGSKVLITGAGPIGLVTLLTARALGAS-RVVITDILEHKLKTAKEMGADATVLI 368
V G K+L G G G ++ + A +G+S V DI +G
Sbjct: 37 EAWQVKPGEKILEIGCGQ-GDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQ------ 89
Query: 369 DRNHSLEEISTHIIELLQGEQ--------PDKTIDC 396
NH L + + D+ D
Sbjct: 90 AWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDR 125
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 32.5 bits (74), Expect = 0.079
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 319 KVLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADATVL 367
+ + GAG IG + + V + D L MG +
Sbjct: 7 NICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQV 55
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 34.0 bits (77), Expect = 0.087
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 317 GSKVLITGAGPIGLVTLLTARALGASRVVI 346
+K L+ GAGP GL + LGA V++
Sbjct: 92 NTKCLVVGAGPCGLRAAVELALLGARVVLV 121
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 33.8 bits (78), Expect = 0.088
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 74 SLRFREQKPIEDPDDHEVLLEMHCVGICGSDVHYLTHGQIGDFRLSDPMIVGHEASGIVS 133
+ I +P HE+L+++ + + D + P ++G +A G+V
Sbjct: 19 LFKTFNL-DIPEPKVHEILVKIQSISVNPVDT-KQRLMDVSKA----PRVLGFDAIGVVE 72
Query: 134 KVGAKVKHLKATRPG----GCLVIVGAGS 158
VG +V G GS
Sbjct: 73 SVGNEVTMFN---QGDIVYYSGSPDQNGS 98
Score = 33.4 bits (77), Expect = 0.14
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 27 PMIVGHEASGIVSKVGAKVKHLKV 50
P ++G +A G+V VG +V
Sbjct: 60 PRVLGFDAIGVVESVGNEVTMFNQ 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.092
Identities = 25/101 (24%), Positives = 32/101 (31%), Gaps = 30/101 (29%)
Query: 47 HLKVDNQTRFVPEFRNVCLSPILRRRFSLRFREQKPIED-------PDDHEVLLEM---- 95
HLK + FR V L RF EQK D L ++
Sbjct: 480 HLKNIEHPERMTLFRMVFL--------DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 96 -HCVGICGSDVHY-LTHGQIGDFRLSDPMIVGHEASGIVSK 134
+ IC +D Y I DF + E + I SK
Sbjct: 532 PY---ICDNDPKYERLVNAILDF------LPKIEENLICSK 563
Score = 34.1 bits (77), Expect = 0.11
Identities = 51/400 (12%), Positives = 108/400 (27%), Gaps = 126/400 (31%)
Query: 89 HEVLLEMHCVGICGSD-VHYLTHGQIGDFRLSDPMIVGHEASGIVSKVGAKVKHLKATRP 147
H + E D + + +F D V I+SK ++ H
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKD---VQDMPKSILSK--EEIDH------ 53
Query: 148 GGCLVIVGAGSQDVKIPLVLTMTKEIDIRGVFRYAN-----DYPIALAMVASGKVDVKKL 202
I+ + + V ++ +Y ++ + + + +
Sbjct: 54 -----IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSM 107
Query: 203 ITHNYLLE-DTLH---------------AFETAKTGAGN---AIKVMIH----------- 232
+T Y+ + D L+ + + A V+I
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 233 ---CDRVAIEPGVPCR----TCTYCKEGRY------NLCRQI--FFCA------TPPDHG 271
C ++ + + C L QI + +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 272 N-----LSRYYRHAADFCHKLP--DHVSLEEGALLEPLSVGVHACRRAGVTLGSKVLITG 324
+ L R + + + L +V + ++ C K+L+T
Sbjct: 228 HSIQAELRRLLKSK-PYENCLLVLLNVQNAK--AWNAFNLS---C---------KILLT- 271
Query: 325 AGPIGLVT---LLTARALGASRVVITDILEHKLK--TAKE-MGADATVLIDRNHSL--EE 376
T +T A+ I+ L+H T E L R L E
Sbjct: 272 -------TRFKQVTDFLSAATTTHIS--LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 377 ISTH------IIELLQGEQPD-----KTIDCSGIESTIKL 405
++T+ I E ++ + K ++C + + I+
Sbjct: 323 LTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIES 361
Score = 32.1 bits (72), Expect = 0.42
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 23/81 (28%)
Query: 32 HEASGI----VSKVGAKV----------KHLKVDNQTRFVPEFRNVCLSP-ILRRRF-SL 75
E +S + + KH+ D T + NV L P R+ F L
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRL 378
Query: 76 R-FREQKPIEDPDDHEVLLEM 95
F I P +LL +
Sbjct: 379 SVFPPSAHI--P---TILLSL 394
Score = 31.0 bits (69), Expect = 0.94
Identities = 50/391 (12%), Positives = 103/391 (26%), Gaps = 128/391 (32%)
Query: 46 KHLKV-DNQ------TRFVPEFRNVC--LSPILRRRFSLRFREQKPIEDPDDHEVLLEMH 96
K + TRF + V LS SL + + +LL+
Sbjct: 257 KAWNAFNLSCKILLTTRF----KQVTDFLSAATTTHISLDH-HSMTLTPDEVKSLLLK-- 309
Query: 97 CVGICGSD-------VHYLTHGQIGDFRLSDPMI-------VGHEASGIVSKVGAKVKHL 142
+ D + I + + D + V + + + + + + L
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAE-SIRDGLATWDNWKHVNCDK--LTTIIESSLNVL 366
Query: 143 KATRPGGC---LVIVGAGSQDVKIPL-VLTM----TKEIDIRGVFRYANDYPIALAMVAS 194
+ L + IP +L++ + D+ V
Sbjct: 367 EPAEYRKMFDRLSVF---PPSAHIPTILLSLIWFDVIKSDVMVV---------------- 407
Query: 195 GKVDVKKLITHNYLLED--------TLHA--FETAKTGAGNAIKVMIHCDRVAIEPGVPC 244
V KL H Y L + ++ + E + +H R ++
Sbjct: 408 ----VNKL--HKYSLVEKQPKESTISIPSIYLELKVK---LENEYALH--RSIVD----- 451
Query: 245 RTCTYCKEGRYNLCRQIFFCATPPDHGNLSRYYRHAADFCHKLPDHVS----LEEGALLE 300
YN+ + P + L +Y+ + H + H+ E L
Sbjct: 452 ---------HYNIPKTFDSDDLIPPY--LDQYF-----YSH-IGHHLKNIEHPERMTLFR 494
Query: 301 PLSVGVHACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAKEM 360
+ + L K+ A G+ + + +K
Sbjct: 495 MVFLDFR-------FLEQKIRHDS---------TAWNASGSILNTLQQLKFYKPYICDND 538
Query: 361 GADATVLIDRNHSLEEISTHIIE-----LLQ 386
++ L +I ++I LL+
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLR 569
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 33.0 bits (75), Expect = 0.15
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 307 HACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADA 364
G+KVL G G G T++ A+ + + DI L+ A+E
Sbjct: 28 LLHHDTVYPPGAKVLEAGCGI-GAQTVILAKNNPDAEITSIDISPESLEKARENTEKN 84
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 32.3 bits (74), Expect = 0.20
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 317 GSKVLITGA-GPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLE 375
KV++ G G +G L + G V+ D+ + AD+ +L+D N +
Sbjct: 3 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQ-------ADSNILVDGNKNWT 54
Query: 376 E 376
E
Sbjct: 55 E 55
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center
for eukaryotic structural genomics, CESG, structural
genomics; 2.79A {Cyanidioschyzon merolae}
Length = 281
Score = 32.5 bits (73), Expect = 0.23
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 307 HACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHK-LKTAKEMGADAT 365
C + + G V GAG GLV+++ GA +VV TD + + L + + + T
Sbjct: 70 TLCWQPELIAGKTVCELGAGA-GLVSIVAFL-AGADQVVATDYPDPEILNSLESNIREHT 127
Query: 366 VLIDRNHSLEEISTHIIELLQGEQPDKTIDCSGIEST 402
+ +++ S ++ G+ PD C+G++
Sbjct: 128 ANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRF 164
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 32.3 bits (74), Expect = 0.29
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 312 AGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDI 349
AG ++VL+ G G GL + TA+ LGA V+ TD+
Sbjct: 167 AGTVPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDV 203
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 31.8 bits (73), Expect = 0.31
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
Query: 317 GSKVLITGAGP-IGLVTLLTARAL---GASRVVITDILEHKLK-TAKEMGADATVL 367
+++TGAG +G L G +V + +L+ +G +
Sbjct: 3 LGHIIVTGAGSGLGRA---LTIGLVERGH-QVSMMGRRYQRLQQQELLLGNAVIGI 54
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain,
rossmann fold, oxidoreductase; 1.90A {Escherichia coli}
PDB: 1x14_A* 1x15_A* 2bru_A*
Length = 401
Score = 31.9 bits (73), Expect = 0.34
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 312 AGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDI 349
AG +KV++ GAG GL + A +LGA V D
Sbjct: 167 AGKVPPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDT 203
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 31.9 bits (73), Expect = 0.35
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 9/108 (8%)
Query: 270 HGNLSRYYRHAADFCHKLPDHVSLEEGALLEPLSV----GVHACRRAGVTLGSK-VLITG 324
G L+ R D+ LP +S ++ V A AG+ V++TG
Sbjct: 95 WGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTG 154
Query: 325 A-GPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADATVLIDRN 371
A G +G + LG ++ K +GA+ ++ R+
Sbjct: 155 ASGGVGSTAVALLHKLGYQVAAVSGRESTH-GYLKSLGANR--ILSRD 199
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Length = 405
Score = 31.9 bits (73), Expect = 0.37
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 312 AGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDI 349
AG +K+ + GAG GL + TAR LGA V TD+
Sbjct: 185 AGTVPAAKIFVMGAGVAGLQAIATARRLGA-VVSATDV 221
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 31.8 bits (73), Expect = 0.41
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 296 GALLEPLSVGVHACR--------RAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVI 346
+ + R R + +++++ G G IGL TA ++
Sbjct: 121 SGAVGKAN-NFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLL 178
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 31.4 bits (72), Expect = 0.52
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 305 GVHACR--------RAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVI 346
V R R + V++ GAG IGL TARA G V+
Sbjct: 122 DVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVV 171
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle
structural genomics center for infectious disease, S
tuberculosis; 1.82A {Mycobacterium smegmatis str}
Length = 381
Score = 31.5 bits (72), Expect = 0.53
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 312 AGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDI 349
AG + L+ G G GL L TA+ LGA + D+
Sbjct: 179 AGTVKPASALVLGVGVAGLQALATAKRLGA-KTTGYDV 215
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 31.8 bits (72), Expect = 0.57
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 15/106 (14%)
Query: 281 ADFCHKLPDHVSLEEGALLEPLSVGV------HA-CRRAGVTLGSKVLI-TGAGPIGLVT 332
++P +LEE A SV + ++ R + G VLI +G+G +G
Sbjct: 1630 QHATWEVPSTWTLEEAA-----SVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAA 1684
Query: 333 LLTARALGASRVVITDILE-HKLKTAKEMGADATVLID-RNHSLEE 376
+ A + G E A+ D T + R+ S E+
Sbjct: 1685 IAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQ 1730
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 31.5 bits (71), Expect = 0.59
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 320 VLITGAGPIGLVTLLTARALGASRVVITD 348
VL+ GAGP GL A GA RV++ D
Sbjct: 131 VLVVGAGPAGLAAAREASRSGA-RVMLLD 158
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 31.4 bits (72), Expect = 0.60
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 305 GVHACR--------RAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVI 346
GV R R T +++LI G G IG TAR LG S ++
Sbjct: 123 GVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTIL 172
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 0.62
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 9/36 (25%)
Query: 317 GSKVLITGAGP--IG---LVTLLTARALGASRVVIT 347
VLITGAG IG L LL GA +VV+T
Sbjct: 476 DKYVLITGAGKGSIGAEVLQGLLQG---GA-KVVVT 507
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 31.0 bits (71), Expect = 0.62
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 301 PLSVGVHACRRAGVTLGS----KVLITGAGPIGLVTLLTARALGASRVVITD-ILEHKLK 355
+S+G A A LGS VL+ GAG +G + G V++ + E ++
Sbjct: 147 AVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVE 206
Query: 356 TAKEMGADATVLIDRNHSLEEISTHIIE 383
A+++G +A +E+ H+
Sbjct: 207 LARDLGGEA-------VRFDELVDHLAR 227
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 30.7 bits (68), Expect = 0.71
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 19/91 (20%)
Query: 269 DHGNLSRYYRHAADFCHKLPDHVSLEEGALLEPLSVGVHACRRAGVTLGSKVLITGAGPI 328
+GN +YY + C + + + G VL G
Sbjct: 17 QYGNYCKYYGYRNPSCE--DGRLRVLKPEWFR----------------GRDVLDLGCNV- 57
Query: 329 GLVTLLTARALGASRVVITDILEHKLKTAKE 359
G +TL A G SR+V DI + +A++
Sbjct: 58 GHLTLSIACKWGPSRMVGLDIDSRLIHSARQ 88
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 29.8 bits (68), Expect = 0.72
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 13/86 (15%)
Query: 301 PLSVGVHACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDI---LEHKLKTA 357
+S+ G+K+L+ G G + A + +T ++H A
Sbjct: 5 KVSIPSIVYDIVRKNGGNKILLVGNGMLA---SEIAPYFSYPQYKVTVAGRNIDHVRAFA 61
Query: 358 KEMGADATVLIDRNHSLEEISTHIIE 383
++ + + +I + I
Sbjct: 62 EKYEYEY-------VLINDIDSLIKN 80
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 31.0 bits (71), Expect = 0.72
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 305 GVHACR--------RAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVI 346
VH R +AG+ S++LI G G IGL TAR G ++
Sbjct: 125 PVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLV 174
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 30.6 bits (70), Expect = 0.76
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 8/53 (15%)
Query: 317 GSKVLITGAGP-IGLVTLLTARAL---GASRVVITDILEHKLKTAKEMGADAT 365
G L+TGA IG AL GA RV + D + + D
Sbjct: 28 GKVALVTGAAGGIGGAV---VTALRAAGA-RVAVADRAVAGIAADLHLPGDLR 76
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 30.6 bits (70), Expect = 0.81
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 308 ACRRAGVTL--GSKVLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADA 364
G+ G VL+ G G +G A GA ++++ D ++ A +G A
Sbjct: 164 TVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTA 221
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural
genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus
horikoshii}
Length = 201
Score = 30.3 bits (68), Expect = 0.82
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 334 LTARALGASRVVITDILEHKLK 355
LTARA GA ++I + K+K
Sbjct: 23 LTARAFGADGIIIASEEDEKVK 44
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 30.5 bits (70), Expect = 0.84
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 319 KVLITGAGP-IGLVTLLTARALGASRVVITDILEHKLKTAKEMGADATVL 367
V++TG G IG L G +V DI E + + +
Sbjct: 4 GVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPNLFYF 52
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 1.97A
{Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Length = 239
Score = 30.2 bits (69), Expect = 0.94
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 24/80 (30%)
Query: 319 KVLITGAGP--IGLVTLLTARALGASRVVITD------ILEHKLKTAKEMGADATVLID- 369
+V + GAGP L+TL R L + VV+ D +L A +
Sbjct: 2 RVYLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLVDERVLAL---------APGE-KVYV 51
Query: 370 ---RNHSL--EEISTHIIEL 384
S EEI ++
Sbjct: 52 GKEEGESEKQEEIHRLLLRH 71
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 30.4 bits (69), Expect = 0.95
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 319 KVLITG-AGPIG--LVTLLTAR----ALGASRVVITDILE 351
+ I G AG +G L L + + D+ +
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQ 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.1
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 12/37 (32%)
Query: 159 QDVKIPLVLTMTK-EIDIRGVFRYANDYPIALAMVAS 194
Q +K K + ++ YA+D ALA+ A+
Sbjct: 20 QALK--------KLQASLK---LYADDSAPALAIKAT 45
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis,
cobalamin, SAM, SAH, uroporphyrin methyltransferase;
HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP:
c.90.1.1
Length = 280
Score = 29.8 bits (68), Expect = 1.3
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 23/81 (28%)
Query: 319 KVLITGAGP--IGLVTLLTARALGASRVVITD------ILEHKLKTAKEMGADATVLID- 369
V + GAGP GL+TL A AL + V++ D L+ A L
Sbjct: 16 SVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAV--------LEFA 67
Query: 370 ----RNHSL--EEISTHIIEL 384
S +IS ++EL
Sbjct: 68 GKRGGKPSPKQRDISLRLVEL 88
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.20A
{Archaeoglobus fulgidus} SCOP: c.116.1.8
Length = 178
Score = 29.4 bits (66), Expect = 1.3
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 334 LTARALGASRVVITDILEHKLKT 356
LTARA GA + + ++
Sbjct: 26 LTARAFGAKGIYFDTEDKSVFES 48
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 29.8 bits (68), Expect = 1.6
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 319 KVLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAK 358
V+I GAG G++ + A G RV+ +++H +
Sbjct: 29 DVVIIGAGAAGMMCAIEAGKRGR-RVL---VIDHARAPGE 64
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 29.9 bits (67), Expect = 1.6
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 320 VLITGAGPIGLVTLLT-ARALGASRVVI 346
VLI G GP GL A ++
Sbjct: 35 VLIVGCGPAGLTLAAQLAAFPDIRTCIV 62
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate
binding protein, transport protein; 1.71A {Escherichia
coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Length = 321
Score = 29.4 bits (66), Expect = 1.8
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 164 PLVLTMTKEIDIRGVFRYANDYPIALAMVASGKVDV 199
P + M K++ ++ +A DY + + KVD+
Sbjct: 35 PFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDI 70
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif,
SAM, NAD, phosphoserine,
transferase/oxidoreductase/lyase complex; HET: SEP PGE
SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11
c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Length = 457
Score = 29.5 bits (67), Expect = 1.9
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 15/77 (19%)
Query: 319 KVLITGAGP--IGLVTLLTARALGASRVVITDILEHK--LKTAKEMGADATVLID----- 369
+V++ GAGP GL+TL + + + +V+ D L + + DA +
Sbjct: 217 EVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRR---DAD-RVFVGKRA 272
Query: 370 RNHSL--EEISTHIIEL 384
H + EEI+ ++
Sbjct: 273 GYHCVPQEEINQILLRE 289
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 29.5 bits (67), Expect = 2.1
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 305 GVHACR--------RAGVTLGSK-VLITGAGPIGLVTLLTARALGASRVVI 346
GVHA R A + G+K ++ G G IGL G + ++
Sbjct: 131 GVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLL 181
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 29.1 bits (66), Expect = 2.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 317 GSKVLITGA--GPIGLVTLLTARALGASRVVITDILEHKLKTAKE 359
G KV++TGA G IG +GA VV+T + L+
Sbjct: 28 GKKVIVTGASKG-IGREMAYHLAKMGA-HVVVTARSKETLQKVVS 70
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE;
1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Length = 268
Score = 29.1 bits (65), Expect = 2.2
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 318 SKVLITGAGP--IGLVTLLTARALGASRVVI----TDILEHKLKTAKEMGADATVLIDRN 371
S + G G + +++ A+ + V T L ++ +E V ++R
Sbjct: 13 SLLTFVGLGLWDVKDISVKGLEAVREADEVYVEYYTSKLLSSIEEMEEFFGKRVVELER- 71
Query: 372 HSLEEISTHIIELLQGE 388
LEE S +IE + +
Sbjct: 72 SDLEENSFRLIERAKSK 88
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 29.4 bits (67), Expect = 2.5
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 319 KVLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAK 358
+ +I GAG GL LG V + ++ K +
Sbjct: 6 ENIIIGAGAAGLFCAAQLAKLGK-SVT---VFDNGKKIGR 41
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural
genomics, joint center for structural genomics; HET:
UNL; 1.97A {Pseudomonas aeruginosa}
Length = 310
Score = 29.0 bits (65), Expect = 2.6
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 164 PLVLTMTKEIDIRGVFRYANDYPIALAMVASGKVDV 199
P + M+++ + +A DY + + KVD+
Sbjct: 25 PFLKDMSQQTGYQVKAFFAPDYAGIIQGMRFDKVDI 60
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 29.4 bits (65), Expect = 2.6
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 319 KVLITGAGPIGLVT-LLTARALGASRVVI 346
K+L+ GAGP GLV +A + I
Sbjct: 2 KILVIGAGPAGLVFASQLKQARPLWAIDI 30
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 29.0 bits (66), Expect = 2.8
Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 24/109 (22%)
Query: 291 VSLEEGA--LLEPLS---------VGVHACRRA----GVTLGS-------KVLITGAGPI 328
V L + LL P+S G R GV LG KV+I G G +
Sbjct: 119 VELPNRSLPLLTPMSIIAGRLSVQFGARFLERQQGGRGVLLGGVPGVKPGKVVILGGGVV 178
Query: 329 GLVTLLTARALGASRVVITDILEHKLKTAKE-MGADATVLIDRNHSLEE 376
G A LGA +V I DI +L + G+ +L + +E
Sbjct: 179 GTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNSAEIET 226
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 29.0 bits (66), Expect = 3.1
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 24/109 (22%)
Query: 291 VSLEEGA--LLEPLS---------VGVHACRRA----GVTLGS-------KVLITGAGPI 328
V L +G LL P+S VG + GV LG V+I G G +
Sbjct: 118 VQLPDGTLPLLVPMSEVAGRMAPQVGAQFLEKPKGGRGVLLGGVPGVAPASVVILGGGTV 177
Query: 329 GLVTLLTARALGASRVVITDILEHKLKTAKE-MGADATVLIDRNHSLEE 376
G A +GA +V I D+ +L+ + G L ++++
Sbjct: 178 GTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLTATEANIKK 225
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH;
2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Length = 294
Score = 28.7 bits (65), Expect = 3.1
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 23/81 (28%)
Query: 319 KVLITGAGP--IGLVTLLTARALGASRVVITD------ILEHKLKTAKEMGADATVLID- 369
V + GAGP GL+TL L + VV+ D ++ ++ + I
Sbjct: 26 SVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQ--------RIYV 77
Query: 370 ----RNHSL--EEISTHIIEL 384
+HSL EEI+ ++ L
Sbjct: 78 GKRCGHHSLPQEEINELLVRL 98
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 28.8 bits (65), Expect = 3.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 320 VLITGAGPIGLVTLLTARALGASRVVI 346
V++ GAGP GL+ R G +V+
Sbjct: 15 VIVVGAGPAGLMLAGELRLGGVDVMVL 41
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 28.7 bits (64), Expect = 3.4
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 319 KVLITGAG-PIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEI 377
+LIT AG LV + RV D L +A M AD ++ + +E I
Sbjct: 6 HLLITSAGRRAKLVEYF-VKEFKTGRVSTADC--SPLASALYM-ADQHYIVPKIDEVEYI 61
Query: 378 STHIIELLQGEQPDKTIDCSGIE 400
H++ L Q E + E
Sbjct: 62 D-HLLTLCQDEGVTALLTLIDPE 83
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 28.8 bits (64), Expect = 3.6
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 319 KVLITGAGPIGLVTLLTARALGASRVVITD 348
V I G GP G+ L + V + +
Sbjct: 110 DVAIIGGGPAGIGAALELQQYL--TVALIE 137
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 28.6 bits (64), Expect = 3.6
Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 307 HACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADA 364
V G +VL G G IG + A A RV I ++ A A
Sbjct: 52 EMIALLDVRSGDRVLDVGCG-IGKPAVRLATARDV-RVTGISISRPQVNQANARATAA 107
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 28.7 bits (63), Expect = 3.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 319 KVLITGAGPIGLVTLLTARALGASRVVI 346
K++I GAGP GL + LG +
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHL 38
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 28.6 bits (63), Expect = 3.7
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 313 GVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADATVLID 369
G +G VL+ G+G + + T A V + + + + +D
Sbjct: 19 GRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLD 75
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 28.9 bits (65), Expect = 3.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 320 VLITGAGPIGLVTLLTARALGASRVVI 346
V++ G GP+GL+ RA G +V+
Sbjct: 52 VVVVGGGPVGLMLAGELRAGGVGALVL 78
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix
bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Length = 515
Score = 28.7 bits (63), Expect = 3.8
Identities = 8/75 (10%), Positives = 19/75 (25%), Gaps = 7/75 (9%)
Query: 259 RQIFFCATPPDHGNLSRYYRHAAD----FCHKLPDHVSLEEGALLEPLSVGVHACRRAGV 314
+Q N+ + + + D + + S + +
Sbjct: 121 KQSIGAEGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSPNLRIVEKTDD 180
Query: 315 TL---GSKVLITGAG 326
+ G K + TG
Sbjct: 181 GIIVNGVKAVGTGIA 195
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 28.5 bits (63), Expect = 4.5
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 314 VTLGSKVLITGAGPIGLVTL-LTAR--ALGASRVVITDILEHKLKTAKEMGADATVLIDR 370
+ ++ +I G G +G + L + S+V I K+ A++ G +
Sbjct: 10 ILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQIT 69
Query: 371 NHSLEEISTHIIELLQGEQPDKTIDCS 397
+ E+ + E+ D ID S
Sbjct: 70 PQNYLEVIGSTL-----EENDFLIDVS 91
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 28.6 bits (64), Expect = 4.5
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 289 DHVSLEEGALLEPLSVGVHACRRAGVTLGSKVLITGA-GPIGLVTLLTARAL---GASRV 344
D V++ + A A VLITG G IG AR L GA R+
Sbjct: 231 DQVAVRASGIYGRRVSRAAAAGAASWQPSGTVLITGGMGAIG---RRLARRLAAEGAERL 287
Query: 345 VIT 347
V+T
Sbjct: 288 VLT 290
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 28.3 bits (64), Expect = 4.6
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 320 VLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAK 358
V++ G GP GL+ + A GA V+ +L+ K +
Sbjct: 29 VIVIGGGPSGLMAAIGAAEEGA-NVL---LLDKGNKLGR 63
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 28.4 bits (64), Expect = 4.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 320 VLITGAGPIGLVTLLTARALGASRVVI 346
V++ GAGP G++ R G VV+
Sbjct: 14 VIVVGAGPAGMMLAGELRLAGVEVVVL 40
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 28.4 bits (64), Expect = 4.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 320 VLITGAGPIGLVTLLTARALGASRVVI 346
V++ G G G+ + A GA +V+
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVLVL 70
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 28.3 bits (64), Expect = 4.8
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 15/61 (24%)
Query: 165 LVLTMTKEIDIRG--VFRYANDYPIALA----MVASGKVDVKKLITHNYLLEDTLHAFET 218
+ + I V Y + + + GK+ +K E ++ E
Sbjct: 280 EAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIK---------ETVINGLEN 330
Query: 219 A 219
Sbjct: 331 M 331
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 28.2 bits (64), Expect = 4.9
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 24/109 (22%)
Query: 291 VSLEEGA--LLEPLS---------VGVHACRRA----GVTLGS-------KVLITGAGPI 328
V +GA LL P+S VG + R GV +G V++ GAG
Sbjct: 120 VQTADGALPLLAPMSEVAGRLAAQVGAYHLMRTQGGRGVLMGGVPGVEPADVVVIGAGTA 179
Query: 329 GLVTLLTARALGASRVVITDILEHKLKTAKE-MGADATVLIDRNHSLEE 376
G A +GA V + DI KL+ + LE
Sbjct: 180 GYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEG 227
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 27.7 bits (61), Expect = 5.4
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 317 GSKVLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEE 376
G V+ G G L + LGA V DI ++TAK ++ +
Sbjct: 52 GRSVIDAGTGNGIL--ACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISG 109
Query: 377 ISTHIIELLQGEQPDKTIDCSGIESTIKLG 406
I K D + I+ +
Sbjct: 110 KYDTWIMNPPFGSVVKHSDRAFIDKAFETS 139
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 28.0 bits (62), Expect = 5.5
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 319 KVLITGAGPIGLVTLLTARAL-GASRVVITDILEHKLKTAKEMGADATVLIDRNHSLEEI 377
KVLI GAG IG A L V I D+ L+ KE V L E+
Sbjct: 18 KVLILGAGNIGRA---IAWDLKDEFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEV 74
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 28.1 bits (62), Expect = 5.5
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 311 RAGVTLGSKVLITGAGPIGLVTLLTARALGAS-RVVITDILEHKLKTAKE 359
R G+ G +L G G G ++ AL + + + E LK A +
Sbjct: 105 RCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMD 153
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 28.0 bits (63), Expect = 5.8
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 17/92 (18%)
Query: 317 GSKVLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAKE----MGADA--TVLIDR 370
G V+ A P G T L ++ D+ + ++K K+ MG ++ D
Sbjct: 260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKD- 318
Query: 371 NHSLEEISTHIIELLQGEQPDKT-ID--CSGI 399
+ E++ E DK +D C+
Sbjct: 319 -------ARKAPEIIGEEVADKVLLDAPCTSS 343
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 27.8 bits (62), Expect = 6.0
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 308 ACRRAGVTLGSKVLITGAGPIGLVTLLTARALGASRVVITDILEHKLKTAKEMGADATVL 367
+ + G +L GAG G R L + V + E L + +AT +
Sbjct: 28 RALKGLLPPGESLLEVGAGT-GYWL----RRLPYPQKVGVEPSEAMLAVGRRRAPEATWV 82
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 28.2 bits (63), Expect = 6.3
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 319 KVLITGAGPIGLVTLLTARAL 339
V I G GP+G L A+ L
Sbjct: 28 NVAIIGGGPVG---LTMAKLL 45
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: c.90.1.1
Length = 235
Score = 27.8 bits (63), Expect = 6.5
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 319 KVLITGAGP--IGLVTLLTARALGASRVVITDIL 350
KV + GAG +TL R L + VV+ D L
Sbjct: 4 KVYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRL 37
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 27.7 bits (62), Expect = 6.7
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 318 SKVLITG-AGPIG--LVTLLTARALGASRVVITDIL 350
+++L+TG AG +G + L A V ++DI+
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTL---AHEVRLSDIV 35
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase;
HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2
c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 28.1 bits (62), Expect = 7.4
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 320 VLITGAGPIGLVT-LLTARALGASRVVITDILE 351
VLI GAGP GL+ + + + + I++
Sbjct: 11 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIID 43
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 27.2 bits (60), Expect = 7.4
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 306 VHACRRAGVTLGSKVLITGAGPIGLVTLLTARALGAS-RVVITDILEHKLKTAKE 359
H + V G V+ G G T A +G + RV DI + + +
Sbjct: 12 SHDYIKMFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTK 65
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET:
AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C*
3clt_C* 3clu_C*
Length = 264
Score = 27.6 bits (62), Expect = 7.5
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 354 LKTAKEMGADATVLI--DRNHSLEEISTHII--ELLQGEQPD 391
L+ GAD V + D + I I E+++ E PD
Sbjct: 73 LRKCLAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPD 114
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 27.8 bits (62), Expect = 8.5
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 311 RAGVTLGSKVLITGAGPIGL----VTLLTARALGASRVVI 346
+ I G G +G ARALG + +
Sbjct: 174 EKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQL 213
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 27.5 bits (61), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 320 VLITGAGPIGLVTLLTARALGASRVVI 346
V I GAG G+ +T + G + V+I
Sbjct: 7 VAIIGAGAAGIGMAITLKDFGITDVII 33
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 27.2 bits (60), Expect = 8.6
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 317 GSKVLITGAGPIGLVTLLTARALGA-SRVVITDILEHKLKTAKEMGADATVLID 369
++ G G G + L+ L S+ D E L A+E+ +
Sbjct: 23 PVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSE 75
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes,
beta-strands, lyase; HET: FAD; 1.60A {Clostridium
aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Length = 490
Score = 27.5 bits (60), Expect = 9.2
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 9/69 (13%)
Query: 267 PPDHGNLSRYYRHAAD----FCHKL--PDHVSLEEGALLEPLSVGVHACRRAGVTL---G 317
H N + Y ++ + + P + + + + + + G
Sbjct: 125 TNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRG 184
Query: 318 SKVLITGAG 326
+K TG+
Sbjct: 185 AKAHQTGSI 193
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 27.3 bits (61), Expect = 9.4
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 317 GSKVLITGAGPIGLVTLLTARALGA 341
G +LI G G IG T + G
Sbjct: 140 GRTLLILGTGSIGQHIAHTGKHFGM 164
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole,
S-adenosylmethi transferase; HET: SAH; 2.00A
{Chlorobaculum tepidum} PDB: 2e0k_A*
Length = 259
Score = 27.3 bits (61), Expect = 9.6
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 319 KVLITGAGP--IGLVTLLTARALGASRVVITDILEHKLKTAKEMGADA 364
++ GP GL+T+ L + V+ + D
Sbjct: 6 SIISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAVTSVALDI 53
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 27.4 bits (61), Expect = 9.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 320 VLITGAGPIGLVTLLTARALGASRVVI 346
VLI G GP+G+ L +V+
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVV 55
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 27.3 bits (60), Expect = 9.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 319 KVLITGAGPIGLVTLLTARALGASRVVITDI 349
+V++ GAG IGL T L S + DI
Sbjct: 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDI 32
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 27.2 bits (61), Expect = 9.9
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 7/48 (14%)
Query: 320 VLITGAGP-IGLVTLLTARALGAS--RVVITDILEHKL-KTAKEMGAD 363
V + GAG IG A+ A V KL E+ A
Sbjct: 10 VAVIGAGDYIGAE---IAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.424
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,492,887
Number of extensions: 421725
Number of successful extensions: 1825
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1616
Number of HSP's successfully gapped: 368
Length of query: 408
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 312
Effective length of database: 4,021,377
Effective search space: 1254669624
Effective search space used: 1254669624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.6 bits)