BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14130
(494 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/393 (46%), Positives = 251/393 (63%), Gaps = 45/393 (11%)
Query: 90 VRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFXXXXXXXXXXXXFLVLPIH 149
VRSSKFRHV+G +K D CY++V +++ DS FCA NPKF FLVLP+
Sbjct: 6 VRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLG 65
Query: 150 R---------------------------------------VKLWYIPDGGLSGNLNEWIM 170
+ V +W IPDGGL L E ++
Sbjct: 66 KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 171 DLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVI--DCHPDVINCLSFN 228
L GH +RVG + WHPTA+NV+ SAG D +I++WDVG G A+ + D HPD I + ++
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 229 RDGSRLVTTCKDKTVRVLDPRTGLVISQG-VCHPGTRSSKAVFIGDTGRIVTTGFSRHSD 287
RDG+ + T+C+DK VRV++PR G V+++ H GTR AVF+ + G+I+TTGFSR S+
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE-GKILTTGFSRMSE 244
Query: 288 RQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTNERPYI 347
RQV LWD L PL+L+ +D+SSGVL P++D DT I++L GKGD +IRY+E+T+E P++
Sbjct: 245 RQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFL 304
Query: 348 HFLNQSLSGAPQRGLGFMPKRGCDVTQCEIFRFFKLHTTRNMCEPISMIVPRKSDQFQDD 407
H+L+ S QRG+G+MPKRG +V +CEI RF+KLH + CEPI+M VPRKSD FQ+D
Sbjct: 305 HYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERK--CEPIAMTVPRKSDLFQED 362
Query: 408 LYPDTAAPVPALSAADWYKGVNRPPVLMSMRTG 440
LYP TA P PAL+A +W G + P+L+S++ G
Sbjct: 363 LYPPTAGPDPALTAEEWLGGRDAGPLLISLKDG 395
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 5 YRGPVLDIKWNPFNDNIIASCSDDCT 30
+ PVLDI W P NDN+IAS S+DCT
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCT 105
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 357 bits (917), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 182/393 (46%), Positives = 251/393 (63%), Gaps = 45/393 (11%)
Query: 90 VRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFXXXXXXXXXXXXFLVLPIH 149
VRSSKFRHV+G +K D CY++V +++ DS FCA NPKF FLVLP+
Sbjct: 6 VRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALIXEASGGGAFLVLPLG 65
Query: 150 R---------------------------------------VKLWYIPDGGLSGNLNEWIM 170
+ V +W IPDGGL L E ++
Sbjct: 66 KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 171 DLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVI--DCHPDVINCLSFN 228
L GH +RVG + WHPTA+NV+ SAG D +I++WDVG G A+ + D HPD I + ++
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 229 RDGSRLVTTCKDKTVRVLDPRTGLVISQG-VCHPGTRSSKAVFIGDTGRIVTTGFSRHSD 287
RDG+ + T+C+DK VRV++PR G V+++ H GTR AVF+ + G+I+TTGFSR S+
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE-GKILTTGFSRMSE 244
Query: 288 RQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTNERPYI 347
RQV LWD L PL+L+ +D+SSGVL P++D DT I++L GKGD +IRY+E+T+E P++
Sbjct: 245 RQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFL 304
Query: 348 HFLNQSLSGAPQRGLGFMPKRGCDVTQCEIFRFFKLHTTRNMCEPISMIVPRKSDQFQDD 407
H+L+ S QRG+G+MPKRG +V + EI RF+KLH + CEPI+M VPRKSD FQ+D
Sbjct: 305 HYLSMFSSKESQRGMGYMPKRGLEVNKXEIARFYKLHERK--CEPIAMTVPRKSDLFQED 362
Query: 408 LYPDTAAPVPALSAADWYKGVNRPPVLMSMRTG 440
LYP TA P PAL+A +W G + P+L+S++ G
Sbjct: 363 LYPPTAGPDPALTAEEWLGGRDAGPLLISLKDG 395
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 5 YRGPVLDIKWNPFNDNIIASCSDDCT 30
+ PVLDI W P NDN+IAS S+DCT
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCT 105
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 50 IKIWGAYDGKFEKTIS-------GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK 101
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG+ + H S+ F
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSA-VHF 160
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 161 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 252
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 19/176 (10%)
Query: 169 IMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFN 228
+ L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 229 RDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRS-SKAVFIGD----TGRIVTTGFS 283
D + LV+ DKT+++ D +S G C + S VF + + IV+ F
Sbjct: 78 SDSNLLVSASDDKTLKIWD------VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF- 130
Query: 284 RHSDRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
D V +W D+ T + L+T+ + S + + + L ++ DG R ++
Sbjct: 131 ---DESVRIW---DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 111 LKIWDVSSGKC-------LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 162
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 69 IKIWGAYDGKFEKTIS-------GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGK 120
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 121 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 179
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 180 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 235
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 236 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 271
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 41 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRS-SKAVFIGD----TGRIVTTGFSRHS 286
+ LV+ DKT+++ D +S G C + S VF + + IV+ F
Sbjct: 100 NLLVSASDDKTLKIWD------VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---- 149
Query: 287 DRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
D V +W D+ T L+T+ + S + + + L ++ DG R ++
Sbjct: 150 DESVRIW---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 113 LKIWDVSSGKC-------LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 164
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 71 IKIWGAYDGKFEKTIS-------GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGK 122
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 123 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 181
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 182 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 237
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 238 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 273
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 43 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRS-SKAVFIGD----TGRIVTTGFSRHS 286
+ LV+ DKT+++ D +S G C + S VF + + IV+ F
Sbjct: 102 NLLVSASDDKTLKIWD------VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---- 151
Query: 287 DRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
D V +W D+ T L+T+ + S + + + L ++ DG R ++
Sbjct: 152 DESVRIW---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 95 LKIWDVSSGKC-------LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 146
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 53 IKIWGAYDGKFEKTIS-------GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGK 104
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 163
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 164 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 220 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 255
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 25 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRS-SKAVFIGD----TGRIVTTGFSRHS 286
+ LV+ DKT+++ D +S G C + S VF + + IV+ F
Sbjct: 84 NLLVSASDDKTLKIWD------VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---- 133
Query: 287 DRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
D V +W D+ T L+T+ + S + + + L ++ DG R ++
Sbjct: 134 DESVRIW---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 106 LKIWDVSSGKC-------LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 157
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 158 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 64 IKIWGAYDGKFEKTIS-------GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK 115
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 116 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 174
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 175 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 230
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 231 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 266
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 36 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRS-SKAVFIGD----TGRIVTTGFSRHS 286
+ LV+ DKT+++ D +S G C + S VF + + IV+ F
Sbjct: 95 NLLVSASDDKTLKIWD------VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---- 144
Query: 287 DRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
D V +W D+ T L+T+ + S + + + L ++ DG R ++
Sbjct: 145 DESVRIW---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 92 LKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 143
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 50 IKIWGAYDGKFEKTIS-------GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK 101
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 160
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 161 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 252
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 22 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 232 SRLVTTCKDKTVRVLDPRTG 251
+ LV+ DKT+++ D +G
Sbjct: 81 NLLVSASDDKTLKIWDVSSG 100
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 92 LKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 143
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 50 IKIWGAYDGKFEKTIS-------GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK 101
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 160
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 161 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 252
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 22 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 232 SRLVTTCKDKTVRVLDPRTG 251
+ LV+ DKT+++ D +G
Sbjct: 81 NLLVSASDDKTLKIWDVSSG 100
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 95 LKIWDVSSGKC-------LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 146
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 53 IKIWGAYDGKFEKTIS-------GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK 104
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 163
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 164 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 220 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 255
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 25 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRS-SKAVFIGD----TGRIVTTGFSRHS 286
+ LV+ DKT+++ D +S G C + S VF + + IV+ F
Sbjct: 84 NLLVSASDDKTLKIWD------VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---- 133
Query: 287 DRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
D V +W D+ T L+T+ + S + + + L ++ DG R ++
Sbjct: 134 DESVRIW---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 89 LKIWDVSSGKC-------LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 140
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 47 IKIWGAYDGKFEKTIS-------GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK 98
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 157
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 158 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 214 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 249
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 19 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRS-SKAVFIGD----TGRIVTTGFSRHS 286
+ LV+ DKT+++ D +S G C + S VF + + IV+ F
Sbjct: 78 NLLVSASDDKTLKIWD------VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---- 127
Query: 287 DRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
D V +W D+ T L+T+ + S + + + L ++ DG R ++
Sbjct: 128 DESVRIW---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 95/218 (43%), Gaps = 26/218 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 50 IKIWGAYDGKFEKTIS-------GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK 101
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG+ + H S+ F
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSA-VHF 160
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSG-VLFPYYD 319
D IV++ + D +WD +D N P++ + +L D
Sbjct: 161 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 320 HDTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+D + L+ KG Y NE+ Y F N S++G
Sbjct: 217 NDLK-LWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 252
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 19/176 (10%)
Query: 169 IMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFN 228
+ L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 229 RDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRS-SKAVFIGD----TGRIVTTGFS 283
D + LV+ DKT+++ D +S G C + S VF + + IV+ F
Sbjct: 78 SDSNLLVSASDDKTLKIWD------VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF- 130
Query: 284 RHSDRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
D V +W D+ T + L+T+ + S + + + L ++ DG R ++
Sbjct: 131 ---DESVRIW---DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 90 LKIWDVSSGKC-------LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 141
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 142 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 48 IKIWGAYDGKFEKTIS-------GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK 99
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 100 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 158
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 159 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 214
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 215 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 250
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 20 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRS-SKAVFIGD----TGRIVTTGFSRHS 286
+ LV+ DKT+++ D +S G C + S VF + + IV+ F
Sbjct: 79 NLLVSASDDKTLKIWD------VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---- 128
Query: 287 DRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
D V +W D+ T L+T+ + S + + + L ++ DG R ++
Sbjct: 129 DESVRIW---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 94 LKIWDVSSGKC-------LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 145
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 146 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 52 IKIWGAYDGKFEKTIS-------GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK 103
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 104 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 162
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 163 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 218
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 219 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 254
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 24 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRS-SKAVFIGD----TGRIVTTGFSRHS 286
+ LV+ DKT+++ D +S G C + S VF + + IV+ F
Sbjct: 83 NLLVSASDDKTLKIWD------VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---- 132
Query: 287 DRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
D V +W D+ T L+T+ + S + + + L ++ DG R ++
Sbjct: 133 DESVRIW---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 85 LKIWDVSSGKC-------LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 136
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 43 IKIWGAYDGKFEKTIS-------GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK 94
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 95 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 153
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 154 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 209
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 210 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 245
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 15 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRS-SKAVFIGD----TGRIVTTGFSRHS 286
+ LV+ DKT+++ D +S G C + S VF + + IV+ F
Sbjct: 74 NLLVSASDDKTLKIWD------VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---- 123
Query: 287 DRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
D V +W D+ T L+T+ + S + + + L ++ DG R ++
Sbjct: 124 DESVRIW---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 95 LKIWDVSSGKC-------LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 146
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 53 IKIWGAYDGKFEKTIS-------GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK 104
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 163
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 164 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 220 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 255
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 25 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRS-SKAVFIGD----TGRIVTTGFSRHS 286
+ LV+ DKT+++ D +S G C + S VF + + IV+ F
Sbjct: 84 NLLVSASDDKTLKIWD------VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---- 133
Query: 287 DRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
D V +W D+ T L+T+ + S + + + L ++ DG R ++
Sbjct: 134 DESVRIW---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 92 LKIWDVSSGKC-------LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 143
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 50 IKIWGAYDGKFEKTIS-------GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK 101
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 160
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 161 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 252
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E + AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSA-DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 232 SRLVTTCKDKTVRVLDPRTG 251
+ LV+ DKT+++ D +G
Sbjct: 81 NLLVSASDDKTLKIWDVSSG 100
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 88 LKIWDVSSGKC-------LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 139
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 140 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 46 IKIWGAYDGKFEKTIS-------GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK 97
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 98 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 156
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 157 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 212
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 213 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 248
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 18 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRS-SKAVFIGD----TGRIVTTGFSRHS 286
+ LV+ DKT+++ D +S G C + S VF + + IV+ F
Sbjct: 77 NLLVSASDDKTLKIWD------VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---- 126
Query: 287 DRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
D V +W D+ T L+T+ + S + + + L ++ DG R ++
Sbjct: 127 DESVRIW---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G + L GH V ++P + N++ S FD + +WDV G+
Sbjct: 89 LKIWDVSSGKC-------LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK 140
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
L + H D ++ + FNRDGS +V++ D R+ D +G
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W DG ++ GHK + + W + N++ SA D + +WDV G+
Sbjct: 47 IKIWGAYDGKFEKTIS-------GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGK 98
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + + C +FN + +V+ D++VR+ D +TG + H S+ F
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA-VHF 157
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDE----------NDLNTPLALETVDSSSGVLFPYYDH 320
D IV++ + D +WD +D N P++ + +
Sbjct: 158 NRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 321 DTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGA 357
+T L+ KG Y NE+ Y F N S++G
Sbjct: 214 NTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 249
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH + V +++ P E +AS+ D LI +W G+ I H I+ ++++ D
Sbjct: 19 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRS-SKAVFIGD----TGRIVTTGFSRHS 286
+ LV+ DKT+++ D +S G C + S VF + + IV+ F
Sbjct: 78 NLLVSASDDKTLKIWD------VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---- 127
Query: 287 DRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
D V +W D+ T L+T+ + S + + + L ++ DG R ++
Sbjct: 128 DESVRIW---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 91/210 (43%), Gaps = 39/210 (18%)
Query: 192 VASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
+A+ D LI +WD+ + + ++ H I L + G +LV+ D+TVR+ D RTG
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 197
Query: 252 -----LVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWDENDLNTPLALET 306
L I GV ++ AV GD G+ + G DR V +WD T +E
Sbjct: 198 QCSLTLSIEDGV------TTVAVSPGD-GKYIAAG---SLDRAVRVWDS---ETGFLVER 244
Query: 307 VDSSSGVLFPYYDHDTRILF-------LAGKGDGNIRYYELTNERPYIHFLNQSLSGAPQ 359
+DS + + D ++F ++G D +++ + L N N+S S P
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN------NKSDSKTPN 298
Query: 360 RGLGFMPKRGCDVTQCEIFRF-FKLHTTRN 388
G C+VT F + TT+N
Sbjct: 299 SGT-------CEVTYIGHKDFVLSVATTQN 321
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 27/141 (19%)
Query: 218 HPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVIS------------QGVCHPGTRS 265
H V+ C+ F+ DG L T C +KT +V G +++ + + + S
Sbjct: 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 266 S----KAVFIGDTGRIVTTGFSRHSDRQVGLWDENDLNTPLALE--TVDSSSGVLFPYYD 319
S ++V G+ + TG DR + +WD + + L+ D S FP D
Sbjct: 122 SDLYIRSVCFSPDGKFLATG---AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 178
Query: 320 HDTRILFLAGKGDGNIRYYEL 340
++G GD +R ++L
Sbjct: 179 K-----LVSGSGDRTVRIWDL 194
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Query: 167 EWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLS 226
E++ L+GHKR + +++ + +V S D I LWD+ G L V++ H +++ C+
Sbjct: 287 EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 343
Query: 227 FNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGF---- 282
F D R+V+ D ++V D LV + P + +GR+ F
Sbjct: 344 F--DNKRIVSGAYDGKIKVWD----LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ 397
Query: 283 --SRHSDRQVGLWDENDLNTPLA 303
S D + +WD LN P A
Sbjct: 398 IVSSSHDDTILIWDF--LNDPAA 418
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 14/169 (8%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH V +++ E V+ + D + +WDV GE L + H + + L FN
Sbjct: 169 LTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--N 223
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVG 291
+VT KD+++ V D + I+ G R++ V D IV S DR +
Sbjct: 224 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV----SASGDRTIK 279
Query: 292 LWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYEL 340
+W+ + L L Y D L ++G D IR +++
Sbjct: 280 VWNTSTCEFVRTLNGHKRGIACL-QYRDR----LVVSGSSDNTIRLWDI 323
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 73/182 (40%), Gaps = 10/182 (5%)
Query: 149 HRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGK 208
H V LW I G G + + GH V + WH E++ S D +++WD
Sbjct: 202 HTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRS 261
Query: 209 GEALT---VIDCHPDVINCLSFNRDGS-RLVTTCKDKTVRVLDPRTGLVISQGVCHPGTR 264
++D H +NCLSFN L T DKTV + D R + H
Sbjct: 262 NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----KLHTFES 317
Query: 265 SSKAVF-IGDTGRIVTTGFSRHSDRQVGLWDENDLNTPLALETV-DSSSGVLFPYYDHDT 322
+F + + T S +DR++ +WD + + + E D +LF + H
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377
Query: 323 RI 324
+I
Sbjct: 378 KI 379
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 18/184 (9%)
Query: 170 MDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKG-------EALTVIDCHPDVI 222
+ L GH++ + W+ + SA D+ + LWD+ G +A + H V+
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV 232
Query: 223 NCLSFNRDGSRLV-TTCKDKTVRVLDPRTGLVI--SQGVCHPGTRSSKAVFIGDTGRIVT 279
++++ L + D+ + + D R+ S V + F + I+
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 280 TGFSRHSDRQVGLWDENDLNTPLALETVDSSSGVLFP--YYDHDTRILFLAGKGDGNIRY 337
TG +D+ V LWD +L L L T +S +F + H+ IL +G D +
Sbjct: 293 TG---SADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSPHNETILASSGT-DRRLNV 346
Query: 338 YELT 341
++L+
Sbjct: 347 WDLS 350
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 72/182 (39%), Gaps = 10/182 (5%)
Query: 149 HRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGK 208
H V LW I G G + + GH V + WH E++ S D + +WD
Sbjct: 202 HTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRS 261
Query: 209 GEALT---VIDCHPDVINCLSFNRDGS-RLVTTCKDKTVRVLDPRTGLVISQGVCHPGTR 264
++D H +NCLSFN L T DKTV + D R + H
Sbjct: 262 NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----KLHTFES 317
Query: 265 SSKAVF-IGDTGRIVTTGFSRHSDRQVGLWDENDLNTPLALETV-DSSSGVLFPYYDHDT 322
+F + + T S +DR++ +WD + + + E D +LF + H
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377
Query: 323 RI 324
+I
Sbjct: 378 KI 379
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 18/184 (9%)
Query: 170 MDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKG-------EALTVIDCHPDVI 222
+ L GH++ + W+ + SA D+ + LWD+ G +A + H V+
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV 232
Query: 223 NCLSFNRDGSRLV-TTCKDKTVRVLDPRTGLVI--SQGVCHPGTRSSKAVFIGDTGRIVT 279
++++ L + D+ + + D R+ S V + F + I+
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 280 TGFSRHSDRQVGLWDENDLNTPLALETVDSSSGVLFP--YYDHDTRILFLAGKGDGNIRY 337
TG +D+ V LWD +L L L T +S +F + H+ IL +G D +
Sbjct: 293 TG---SADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSPHNETILASSGT-DRRLNV 346
Query: 338 YELT 341
++L+
Sbjct: 347 WDLS 350
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH V + H N+V S +D +I+WDV + + L ++ H D I ++ +
Sbjct: 266 LRGHXASVRTVSGHG---NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHER 322
Query: 232 SRLVTTCKDKTVRVLDPRTG 251
R ++ D T+R+ D G
Sbjct: 323 KRCISASXDTTIRIWDLENG 342
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 167 EWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLS 226
++++ L GH V +++ ++ S D + +WD+ KG V + H + CL
Sbjct: 153 KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210
Query: 227 F--NRDGSRLVTTCKDKTVRV 245
++ +VT +D T+ V
Sbjct: 211 IVEYKNIKYIVTGSRDNTLHV 231
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH V + H N+V S +D +I+WDV + + L ++ H D I ++ +
Sbjct: 266 LRGHMASVRTVSGHG---NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 322
Query: 232 SRLVTTCKDKTVRVLDPRTG 251
R ++ D T+R+ D G
Sbjct: 323 KRCISASMDTTIRIWDLENG 342
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 167 EWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLS 226
++++ L GH V +++ ++ S D + +WD+ KG V + H + CL
Sbjct: 153 KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210
Query: 227 F--NRDGSRLVTTCKDKTVRV 245
++ +VT +D T+ V
Sbjct: 211 IVEYKNIKYIVTGSRDNTLHV 231
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 30/219 (13%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
VKLW +G L + L GH V + + P + +ASA D + LW+ G+
Sbjct: 204 VKLWN-----RNGQL---LQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQ 253
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H +N ++F DG + + DKTV++ + R G ++ H + S V
Sbjct: 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH--SSSVWGVA 310
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDENDLNTPLALETVDS-SSGVLFPYYDHDTRILFLAG 329
G+ + S D+ V LW+ N + L+T+ SS V + D + + A
Sbjct: 311 FSPDGQTIA---SASDDKTVKLWNRNGQH----LQTLTGHSSSVWGVAFSPDGQTIASAS 363
Query: 330 KGDGNIRYYELTNERPYIHFLNQSLSG--APQRGLGFMP 366
D ++ + + L Q+L+G + RG+ F P
Sbjct: 364 D-DKTVKLWNRNGQ------LLQTLTGHSSSVRGVAFSP 395
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
VKLW +G L + L GH V + + P + +ASA D + LW+ G+
Sbjct: 409 VKLWN-----RNGQL---LQTLTGHSSSVWGVAFSPD-DQTIASASDDKTVKLWNR-NGQ 458
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + ++F+ DG + + DKTV++ + R G ++ H + S + V
Sbjct: 459 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH--SSSVRGVA 515
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDEN 296
G+ + S D+ V LW+ N
Sbjct: 516 FSPDGQTIA---SASDDKTVKLWNRN 538
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
VKLW +G L + L GH V + + P + +ASA D + LW+ G+
Sbjct: 122 VKLWN-----RNGQL---LQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQ 171
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + ++F+ DG + + DKTV++ + R G ++ H + S + V
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH--SSSVRGVA 228
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDEN 296
G+ + S D+ V LW+ N
Sbjct: 229 FSPDGQTIA---SASDDKTVKLWNRN 251
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 30/219 (13%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
VKLW +G L + L GH V + + P + +ASA D + LW+ G+
Sbjct: 40 VKLWN-----RNGQL---LQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQ 89
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
L + H + ++F+ DG + + DKTV++ + R G ++ H + S V
Sbjct: 90 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH--SSSVWGVA 146
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDENDLNTPLALETVDS-SSGVLFPYYDHDTRILFLAG 329
G+ + S D+ V LW+ N L+T+ SS V + D + + A
Sbjct: 147 FSPDGQTIA---SASDDKTVKLWNRN----GQLLQTLTGHSSSVWGVAFSPDGQTIASAS 199
Query: 330 KGDGNIRYYELTNERPYIHFLNQSLSG--APQRGLGFMP 366
D ++ + + L Q+L+G + RG+ F P
Sbjct: 200 D-DKTVKLWNRNGQ------LLQTLTGHSSSVRGVAFSP 231
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 169 IMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFN 228
+ L GH V + + P + +ASA D + LW+ G+ L + H + ++F+
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 394
Query: 229 RDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDR 288
DG + + DKTV++ + R G ++ H + A F D I S D+
Sbjct: 395 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA-FSPDDQTIA----SASDDK 448
Query: 289 QVGLWDEN 296
V LW+ N
Sbjct: 449 TVKLWNRN 456
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
VKLW +G L + L GH V + + P + +ASA D + LW+ G+
Sbjct: 491 VKLWN-----RNGQL---LQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQ 540
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV 245
L + H + ++F+ DG + + DKTV++
Sbjct: 541 LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 215 IDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDT 274
++ H + ++F+ DG + + DKTV++ + R G ++ H + S V
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH--SSSVWGVAFSPD 68
Query: 275 GRIVTTGFSRHSDRQVGLWDEN 296
G+ + S D+ V LW+ N
Sbjct: 69 GQTIA---SASDDKTVKLWNRN 87
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 39/203 (19%)
Query: 167 EWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLS 226
E I +HGH V + P +++V SA D I +W+V G + H + + +
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241
Query: 227 FNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTR--------------SSKAVFIG 272
N+DG+ + + D+TVRV V++ C R SS +
Sbjct: 242 PNQDGTLIASCSNDQTVRV------WVVATKECKAELREHRHVVECISWAPESSYSSISE 295
Query: 273 DTGRIVTTG-------FSRHSDRQVGLWDENDLNTPLALETV----DSSSGVLFPYYDHD 321
TG S D+ + +W D++T + L T+ + GVLF H
Sbjct: 296 ATGSETKKSGKPGPFLLSGSRDKTIKMW---DVSTGMCLMTLVGHDNWVRGVLF----HS 348
Query: 322 TRILFLAGKGDGNIRYYELTNER 344
L+ D +R ++ N+R
Sbjct: 349 GGKFILSCADDKTLRVWDYKNKR 371
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH+ V + +HP +V+ SA D I +WD G+ + H D + +SF+ G
Sbjct: 104 LSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 232 SRLVTTCKDKTVRVLD 247
L + D T+++ D
Sbjct: 163 KLLASCSADMTIKLWD 178
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH V I + + + ++AS D I LWD E + + H ++ +S +G
Sbjct: 146 LKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCH 260
+V+ +DKT+++ + +TG + H
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCVKTFTGH 233
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W + G +M L GH V + +H + +++ A D + +WD
Sbjct: 320 IKMWDVSTGMC-------LMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLRVWDYKNKR 371
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPR 249
+ ++ H + L F++ +VT D+TV+V + R
Sbjct: 372 CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/210 (18%), Positives = 79/210 (37%), Gaps = 38/210 (18%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAE-NVVASAGFDYLIILWDVGKG 209
+K+W + G + GH+ V + P + ++AS D + +W V
Sbjct: 216 IKMWEVQTGYC-------VKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATK 266
Query: 210 EALTVIDCHPDVINCLSF--------------------NRDGSRLVTTCKDKTVRVLDPR 249
E + H V+ C+S+ + G L++ +DKT+++ D
Sbjct: 267 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 250 TGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWDENDLNTPLALETVDS 309
TG+ + V H + V G+ + S D+ + +W D ++T+++
Sbjct: 327 TGMCLMTLVGHDNW--VRGVLFHSGGKFI---LSCADDKTLRVW---DYKNKRCMKTLNA 378
Query: 310 SSGVLFPYYDHDTRILFLAGKGDGNIRYYE 339
+ H T + G D ++ +E
Sbjct: 379 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 11/169 (6%)
Query: 174 GHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSR 233
GHK+ V +I++ + +++S+ D +I +W+ G+ + + H + + +D SR
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQD-SR 1057
Query: 234 LVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLW 293
L++ D TV+V + TG + CH GT S A+ D + +T +D+ +W
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS-SDATKFSSTS----ADKTAKIW 1112
Query: 294 DENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTN 342
DL +PL E + V + D IL G +G IR + +++
Sbjct: 1113 -SFDLLSPLH-ELKGHNGCVRCSAFSLDG-ILLATGDDNGEIRIWNVSD 1158
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 192 VASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
+AS G D + ++ GE L I H D + C +F+ D S + T DK V++ D TG
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689
Query: 252 LVI 254
++
Sbjct: 690 KLV 692
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 143 FLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLII 202
+V ++V L+ I GL ++ GH + Y ++ P +++ A Y +
Sbjct: 813 IIVAAKNKVLLFDIHTSGLLAEIHT------GHHSTIQYCDFSPY-DHLAVIALSQYCVE 865
Query: 203 LWDVGKGEALTVIDC--HPDVINCLSFNRDGSRLVTTCKDKTVRVLDPR-----TGLVIS 255
LW++ L V DC H ++ + F+ DGS +T D+T+RV + + + +V+
Sbjct: 866 LWNIDS--RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923
Query: 256 QGV 258
Q +
Sbjct: 924 QEI 926
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 214 VIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGD 273
V+ H D + F++DG R+ + DKT++V TG + H A F D
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA-FSSD 668
Query: 274 TGRIVTTGFSRHSDRQVGLWD 294
I T +D++V +WD
Sbjct: 669 DSYIATCS----ADKKVKIWD 685
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 167 EWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLS 226
E ++D+ H+ V + + ++ +A+ D + +WD G+ + D H + +NC
Sbjct: 648 EKLLDIKAHEDEVLCCAF-SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH 706
Query: 227 FNRDGSRLV 235
F + L+
Sbjct: 707 FTNKSNHLL 715
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 24/129 (18%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+KLW + N E + GH V + + P E ++AS D + LWDV
Sbjct: 725 LKLWDL-------NQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSAN 776
Query: 211 ALTVIDCH---------PD----VINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQG 257
I+ P+ ++ C S++ DG +++ K+K V + D T ++++
Sbjct: 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAE- 834
Query: 258 VCHPGTRSS 266
H G S+
Sbjct: 835 -IHTGHHST 842
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 11/169 (6%)
Query: 174 GHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSR 233
GHK+ V +I++ + +++S+ D +I +W+ G+ + + H + + +D SR
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQD-SR 1064
Query: 234 LVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLW 293
L++ D TV+V + TG + CH GT S A+ D + +T +D+ +W
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS-SDATKFSSTS----ADKTAKIW 1119
Query: 294 DENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTN 342
DL +PL E + V + D IL G +G IR + +++
Sbjct: 1120 -SFDLLSPLH-ELKGHNGCVRCSAFSLDG-ILLATGDDNGEIRIWNVSD 1165
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 192 VASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
+AS G D + ++ GE L I H D + C +F+ D S + T DK V++ D TG
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 696
Query: 252 LVI 254
++
Sbjct: 697 KLV 699
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 143 FLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLII 202
+V ++V L+ I GL ++ GH + Y ++ P +++ A Y +
Sbjct: 820 IIVAAKNKVLLFDIHTSGLLAEIHT------GHHSTIQYCDFSPY-DHLAVIALSQYCVE 872
Query: 203 LWDVGKGEALTVIDC--HPDVINCLSFNRDGSRLVTTCKDKTVRVLDPR-----TGLVIS 255
LW++ L V DC H ++ + F+ DGS +T D+T+RV + + + +V+
Sbjct: 873 LWNIDS--RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 930
Query: 256 QGV 258
Q +
Sbjct: 931 QEI 933
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 214 VIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGD 273
V+ H D + F++DG R+ + DKT++V TG + H A F D
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA-FSSD 675
Query: 274 TGRIVTTGFSRHSDRQVGLWD 294
I T +D++V +WD
Sbjct: 676 DSYIATCS----ADKKVKIWD 692
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 167 EWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLS 226
E ++D+ H+ V + + ++ +A+ D + +WD G+ + D H + +NC
Sbjct: 655 EKLLDIKAHEDEVLCCAF-SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH 713
Query: 227 FNRDGSRLV 235
F + L+
Sbjct: 714 FTNKSNHLL 722
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 24/129 (18%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+KLW + N E + GH V + + P E ++AS D + LWDV
Sbjct: 732 LKLWDL-------NQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSAN 783
Query: 211 ALTVIDCH---------PD----VINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQG 257
I+ P+ ++ C S++ DG +++ K+K V + D T ++++
Sbjct: 784 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAE- 841
Query: 258 VCHPGTRSS 266
H G S+
Sbjct: 842 -IHTGHHST 849
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+K+W G E I L+GH V + H E V S D + +WD+ G+
Sbjct: 181 LKVWNAETG-------ECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQ 230
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRT 250
L V+ H + C+ + DG R+V+ D V+V DP T
Sbjct: 231 CLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET 268
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 155 YIPDGGLSGNLNEW-------IMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVG 207
++ G L ++ W I L GH+ +E +N++ S D + +WD+
Sbjct: 291 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME---LKDNILVSGNADSTVKIWDIK 347
Query: 208 KGEALTVI---DCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVI 254
G+ L + + H + CL FN++ ++T+ D TV++ D +TG I
Sbjct: 348 TGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFI 395
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 19/153 (12%)
Query: 192 VASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
V S +D+++ +WD L + H + + L F DG +V+ D ++RV D TG
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG 309
Query: 252 LVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWDENDLNTPLALETVDS-- 309
I H S + I+ +G ++D V +W D+ T L+T+
Sbjct: 310 NCIHTLTGHQSLTSGMEL----KDNILVSG---NADSTVKIW---DIKTGQCLQTLQGPN 359
Query: 310 --SSGVLFPYYDHDTRILFLAGKGDGNIRYYEL 340
S V ++ + + DG ++ ++L
Sbjct: 360 KHQSAVTCLQFNKN---FVITSSDDGTVKLWDL 389
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 189 ENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDP 248
+N++ S D + +W+ GE + + H + C+ + R+V+ +D T+RV D
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDI 226
Query: 249 RTG 251
TG
Sbjct: 227 ETG 229
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 204 WDVGKGEALTVIDCHPD-VINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPG 262
W G+ ++ V+ H D VI CL F G+R+V+ D T++V TG + V H G
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 160
Query: 263 TRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDT 322
S + I+ +G +DR + +W+ T + T+ + + + H+
Sbjct: 161 GVWSSQM----RDNIIISG---STDRTLKVWNA---ETGECIHTLYGHTSTVRCMHLHEK 210
Query: 323 RILFLAGKGDGNIRYYEL 340
R+ ++G D +R +++
Sbjct: 211 RV--VSGSRDATLRVWDI 226
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 169 IMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDV----GKGEALTVIDCHPDVINC 224
+ +L HK++V ++ +P + +A+A D + +WD+ GK L + H +N
Sbjct: 243 LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNA 301
Query: 225 LSFNRDGSRLVTTCKDKTVRV 245
F+ DG+RL+TT + +RV
Sbjct: 302 ACFSPDGARLLTTDQKSEIRV 322
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 169 IMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDV----GKGEALTVIDCHPDVINC 224
+ +L HK++V ++ +P + +A+A D + +WD+ GK L + H +N
Sbjct: 243 LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNA 301
Query: 225 LSFNRDGSRLVTTCKDKTVRV 245
F+ DG+RL+TT + +RV
Sbjct: 302 ACFSPDGARLLTTDQKSEIRV 322
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 169 IMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDV----GKGEALTVIDCHPDVINC 224
+ +L HK++V ++ +P + +A+A D + +WD+ GK L + H +N
Sbjct: 244 LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNA 302
Query: 225 LSFNRDGSRLVTTCKDKTVRV 245
F+ DG+RL+TT + +RV
Sbjct: 303 ACFSPDGARLLTTDQKSEIRV 323
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 174 GHKRRVGYIEWHPTAEN-VVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGS 232
H V + + P+ + V+ S G+D L+ +WD+ G +T + H + + ++ + DGS
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 233 RLVTTCKDKTVRVLDPRTGLVISQ 256
++ KD R+ D G +S+
Sbjct: 210 LCASSDKDGVARLWDLTKGEALSE 233
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 143 FLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLII 202
V I ++K+W D GN I+ L G + + ++ HP ++VVA+ G D ++
Sbjct: 206 LTVNSIGQLKIW---DFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLS 262
Query: 203 LWDVGKGEA-LTVIDCHPDVINCLSFNRDGSRLVTTC-KDKTVRVLDPRTGLVISQGVCH 260
+WDV +G ++++ H + + F+ + TC +D ++ D T + + H
Sbjct: 263 IWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFH 322
Query: 261 PGTRSS 266
G RSS
Sbjct: 323 QGGRSS 328
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 19/115 (16%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEA-LTVID-------------- 216
L GH++ + + W P + ++A+A D + LWDV + L +D
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 217 -CHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG---LVISQGVCHPGTRSSK 267
H +N L F DG L+T D +R+ + G LV VC+ + K
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLK 296
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE--ALTVIDCHPDVINCLSFNR 229
L+ H + V ++ WHP+ E ++ASA +D + L+ + + ++ H + L+F+
Sbjct: 146 LNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP 204
Query: 230 DGSRLVTTCKDKTVRV 245
G RL + D+TVR+
Sbjct: 205 SGQRLASCSDDRTVRI 220
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 167 EWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKG---EALTVIDCHPDVIN 223
E + L GH+ V + W P+ N++A+ D + +W+V + E ++V++ H +
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 224 CLSFNRDGSRLVTTCKDKTVRV 245
+ ++ L + D TV++
Sbjct: 155 HVVWHPSQELLASASYDDTVKL 176
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 30/175 (17%)
Query: 192 VASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCK-DKTVRVLDPRT 250
+AS G D + ++ GE L I H D + C +F+ D R + TC DK V++ + T
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD-DRFIATCSVDKKVKIWNSMT 694
Query: 251 GLVI-------SQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWDENDLNTPLA 303
G ++ Q C T SS + + TG SD + LW DLN
Sbjct: 695 GELVHTYDEHSEQVNCCHFTNSSHHLLLA-TGS---------SDCFLKLW---DLNQKEC 741
Query: 304 LETV-DSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELT--NERPYIH----FLN 351
T+ ++ V + D ++L + DG ++ ++ T NER I+ FLN
Sbjct: 742 RNTMFGHTNSVNHCRFSPDDKLL-ASCSADGTLKLWDATSANERKSINVKQFFLN 795
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 143 FLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLII 202
+V +++ L+ I GL G ++ GH + Y ++ P V + Y +
Sbjct: 819 IMVAAKNKIFLFDIHTSGLLGEIHT------GHHSTIQYCDFSPQNHLAVVALS-QYCVE 871
Query: 203 LWDVGKGEALTVIDC--HPDVINCLSFNRDGSRLVTTCKDKTVRVLDPR 249
LW+ V DC H ++ + F+ DGS +T+ D+T+R+ + +
Sbjct: 872 LWNTDSRSK--VADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 8/132 (6%)
Query: 214 VIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGD 273
V+ H D + F+ DG R+ + DKT++V TG + + H A F D
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCA-FSTD 674
Query: 274 TGRIVTTGFSRHSDRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLA-GKGD 332
I T D++V +W N + L + S V ++ + + L LA G D
Sbjct: 675 DRFIATCSV----DKKVKIW--NSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSD 728
Query: 333 GNIRYYELTNER 344
++ ++L +
Sbjct: 729 CFLKLWDLNQKE 740
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 21/195 (10%)
Query: 168 WIMD----LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVIN 223
W +D L GH+ V ++ + + S FD + +W++ G CH +
Sbjct: 1038 WQLDKCIFLRGHQETVK--DFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVL 1095
Query: 224 CLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFS 283
+ D ++ +T DKT ++ L + + H G A + T ++ TG
Sbjct: 1096 SCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST--LLATG-- 1151
Query: 284 RHSDRQVGLWDEND-----LNTPLALETVDSSSG-VLFPYYDHDTRILFLAGKGDGNIRY 337
+ ++ +W+ ++ L PL+ E + G V + D ++L AG G I++
Sbjct: 1152 -DDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG---GYIKW 1207
Query: 338 YE-LTNERPYIHFLN 351
+ +T E + N
Sbjct: 1208 WNVVTGESSQTFYTN 1222
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 24/129 (18%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+KLW + N E + GH V + + P + ++AS D + LWD
Sbjct: 731 LKLWDL-------NQKECRNTMFGHTNSVNHCRFSPD-DKLLASCSADGTLKLWDATSAN 782
Query: 211 A----------LTVIDCHPD---VINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQG 257
L + D D ++ C S++ DG+R++ K+K +GL+ G
Sbjct: 783 ERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLL---G 839
Query: 258 VCHPGTRSS 266
H G S+
Sbjct: 840 EIHTGHHST 848
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 213 TVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG--LVISQGVCHPGTRSSKAVF 270
TV H D+I+ + G+RL T D++V++ D R G ++I+ H G A
Sbjct: 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWA 66
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDENDLNTPLALETVDSSSGV-LFPYYDHDTRILFLAG 329
G I+ S DR+V +W E + + E S V + HD ++ G
Sbjct: 67 HPMYGNILA---SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG 123
Query: 330 KGDGNIRYYELTNERPY 346
DG I T E +
Sbjct: 124 SSDGAISLLTYTGEGQW 140
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 169 IMDLHGHKRRVGYIEW-HPTAENVVASAGFDYLIILW 204
I DL GH+ V + W HP N++AS +D +I+W
Sbjct: 50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 169 IMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEA---------LTVIDCHP 219
++D HK+ + + W P +++A+ FD + +W K E+ L +I+ H
Sbjct: 51 VLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIW--AKEESADRTFEMDLLAIIEGHE 107
Query: 220 DVINCLSFNRDGSRLVTTCKDKTVRVLDP 248
+ + ++++ DG L T +DK+V + +
Sbjct: 108 NEVKGVAWSNDGYYLATCSRDKSVWIWET 136
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 155 YIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWD--VGKGEAL 212
+I + SG E I L H + V ++ WHP+ E ++AS+ +D + +W E +
Sbjct: 132 WIWETDESGEEYECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDWECV 190
Query: 213 TVIDCHPDVINCLSFNRDGS--RLVTTCKDKTVRV 245
V++ H + F++ RL + D TVRV
Sbjct: 191 AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 26/188 (13%)
Query: 187 TAENVVA-SAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV 245
TA+ A SA +D + LWDV GE H + + ++ S +++ +DKT++V
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 246 LDPRTGLV---------ISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWDEN 296
+ + +SQ P ++ D+ I++ G +D+ V W+ N
Sbjct: 134 WTIKGQCLATLLGHNDWVSQVRVVPNEKADD-----DSVTIISAG----NDKMVKAWNLN 184
Query: 297 DLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTNERPYIHFLNQ---- 352
+ + + +S + D ++ AGK DG I + L ++ Q
Sbjct: 185 QFQ--IEADFIGHNSNINTLTASPDGTLIASAGK-DGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 353 SLSGAPQR 360
SL+ +P R
Sbjct: 242 SLAFSPNR 249
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILW-----DVGKGEALTVIDCHPDVINCLS 226
L GH V + N++ SA D +I W D G + H ++ +
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 227 FNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHS 286
DG+ ++ DKT+R+ D TG + V H S V I ++ +G SR
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS--VDIDKKASMIISG-SR-- 127
Query: 287 DRQVGLW 293
D+ + +W
Sbjct: 128 DKTIKVW 134
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 164 NLNEWIM--DLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDV 221
NLN++ + D GH + + P ++ASAG D I+LW++ +A+ + +V
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 222 INCLSFNRDGSRL-VTTCKDKTVRVLDPR 249
+ L+F+ + L T V LDP+
Sbjct: 241 FS-LAFSPNRYWLAAATATGIKVFSLDPQ 268
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 26/188 (13%)
Query: 187 TAENVVA-SAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV 245
TA+ A SA +D + LWDV GE H + + ++ S +++ +DKT++V
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 246 LDPRTGLV---------ISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWDEN 296
+ + +SQ P ++ D+ I++ G +D+ V W+ N
Sbjct: 134 WTIKGQCLATLLGHNDWVSQVRVVPNEKADD-----DSVTIISAG----NDKMVKAWNLN 184
Query: 297 DLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTNERPYIHFLNQ---- 352
+ + + +S + D ++ AGK DG I + L ++ Q
Sbjct: 185 QFQ--IEADFIGHNSNINTLTASPDGTLIASAGK-DGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 353 SLSGAPQR 360
SL+ +P R
Sbjct: 242 SLAFSPNR 249
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILW-----DVGKGEALTVIDCHPDVINCLS 226
L GH V + N++ SA D +I W D G + H ++ +
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 227 FNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHS 286
DG+ ++ DKT+R+ D TG + V H S V I ++ +G SR
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS--VDIDKKASMIISG-SR-- 127
Query: 287 DRQVGLW 293
D+ + +W
Sbjct: 128 DKTIKVW 134
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 164 NLNEWIM--DLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDV 221
NLN++ + D GH + + P ++ASAG D I+LW++ +A+ + +V
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 222 INCLSFNRDGSRL-VTTCKDKTVRVLDPR 249
+ L+F+ + L T V LDP+
Sbjct: 241 FS-LAFSPNRYWLAAATATGIKVFSLDPQ 268
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 18/167 (10%)
Query: 174 GHKRRVGYIEWHPTAENVVASAGFDYLIILWDVG-KGEALTVIDCHPDVINCLSFNRDGS 232
GH V + + N+ S D + LWD+ A+ H IN + F DG
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 233 RLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSK-----AVFIGDTGRIVTTGFSRHSD 287
R T D T R+ D RTG + P ++ +V +GR++ F+ +S+
Sbjct: 263 RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL---FAGYSN 319
Query: 288 RQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGN 334
+WD L L T+ +S H+ RI L DG+
Sbjct: 320 GDCYVWDTLLAEMVLNLGTLQNS---------HEGRISCLGLSSDGS 357
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDC-----HPDVINCLS 226
L GHK ++ P E + + D +LWDV G+ +++ H + LS
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212
Query: 227 FNR-DGSRLVTTCKDKTVRVLDPR 249
N + + ++ D TVR+ D R
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLR 236
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCH-PDVINC 224
L GH +V ++W P +N + SA D +I+W+ + I H P V+ C
Sbjct: 62 LQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMEC 114
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 26/188 (13%)
Query: 187 TAENVVA-SAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV 245
TA+ A SA +D + LWDV GE H + + ++ S +++ +DKT++V
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 246 LDPRTGLV---------ISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWDEN 296
+ + +SQ P ++ D+ I++ G +D+ V W+ N
Sbjct: 134 WTIKGQCLATLLGHNDWVSQVRVVPNEKADD-----DSVTIISAG----NDKMVKAWNLN 184
Query: 297 DLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTNERPYIHFLNQ---- 352
+ + + +S + D ++ AGK DG I + L ++ Q
Sbjct: 185 QFQ--IEADFIGHNSNINTLTASPDGTLIASAGK-DGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 353 SLSGAPQR 360
SL+ +P R
Sbjct: 242 SLAFSPNR 249
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILW-----DVGKGEALTVIDCHPDVINCLS 226
L GH V + N++ SA D +I W D G + H ++ +
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 227 FNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHS 286
DG+ ++ DKT+R+ D TG + V H S V I ++ +G SR
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS--VDIDKKASMIISG-SR-- 127
Query: 287 DRQVGLW 293
D+ + +W
Sbjct: 128 DKTIKVW 134
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 164 NLNEWIM--DLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDV 221
NLN++ + D GH + + P ++ASAG D I+LW++ +A+ + +V
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 222 INCLSFNRDGSRL-VTTCKDKTVRVLDPR 249
+ L+F+ + L T V LDP+
Sbjct: 241 FS-LAFSPNRYWLAAATATGIKVFSLDPQ 268
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 26/188 (13%)
Query: 187 TAENVVA-SAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV 245
TA+ A SA +D + LWDV GE H + + ++ S +++ +DKT++V
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV 133
Query: 246 LDPRTGLV---------ISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWDEN 296
+ + +SQ P ++ D+ I++ G +D+ V W+ N
Sbjct: 134 WTIKGQCLATLLGHNDWVSQVRVVPNEKADD-----DSVTIISAG----NDKXVKAWNLN 184
Query: 297 DLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTNERPYIHFLNQ---- 352
+ + + +S + D ++ AGK DG I + L ++ Q
Sbjct: 185 QFQ--IEADFIGHNSNINTLTASPDGTLIASAGK-DGEIXLWNLAAKKAXYTLSAQDEVF 241
Query: 353 SLSGAPQR 360
SL+ +P R
Sbjct: 242 SLAFSPNR 249
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILW-----DVGKGEALTVIDCHPDVINCLS 226
L GH V + N++ SA D +I W D G + H ++ +
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 227 FNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCH 260
DG+ ++ DKT+R+ D TG + V H
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 26/188 (13%)
Query: 187 TAENVVA-SAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV 245
TA+ A SA +D + LWDV GE H + + ++ S +++ +DKT++V
Sbjct: 68 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 127
Query: 246 LDPRTGLV---------ISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWDEN 296
+ + +SQ P ++ D+ I++ G +D+ V W+ N
Sbjct: 128 WTIKGQCLATLLGHNDWVSQVRVVPNEKADD-----DSVTIISAG----NDKMVKAWNLN 178
Query: 297 DLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTNERPYIHFLNQ---- 352
+ + + +S + D ++ AGK DG I + L ++ Q
Sbjct: 179 QFQ--IEADFIGHNSNINTLTASPDGTLIASAGK-DGEIMLWNLAAKKAMYTLSAQDEVF 235
Query: 353 SLSGAPQR 360
SL+ +P R
Sbjct: 236 SLAFSPNR 243
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILW-----DVGKGEALTVIDCHPDVINCLS 226
L GH V + N++ SA D +I W D G + H ++ +
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 227 FNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHS 286
DG+ ++ DKT+R+ D TG + V H S V I ++ +G SR
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS--VDIDKKASMIISG-SR-- 121
Query: 287 DRQVGLW 293
D+ + +W
Sbjct: 122 DKTIKVW 128
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 164 NLNEWIM--DLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDV 221
NLN++ + D GH + + P ++ASAG D I+LW++ +A+ + +V
Sbjct: 176 NLNQFQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 234
Query: 222 INCLSFNRDGSRL-VTTCKDKTVRVLDPR 249
+ L+F+ + L T V LDP+
Sbjct: 235 FS-LAFSPNRYWLAAATATGIKVFSLDPQ 262
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 26/188 (13%)
Query: 187 TAENVVA-SAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV 245
TA+ A SA +D + LWDV GE H + + ++ S +++ +DKT++V
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 246 LDPRTGLV---------ISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWDEN 296
+ + +SQ P ++ D+ I++ G +D+ V W+ N
Sbjct: 134 WTIKGQCLATLLGHNDWVSQVRVVPNEKADD-----DSVTIISAG----NDKMVKAWNLN 184
Query: 297 DLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTNERPYIHFLNQ---- 352
+ + + +S + D ++ AGK DG I + L ++ Q
Sbjct: 185 QFQ--IEADFIGHNSNINTLTASPDGTLIASAGK-DGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 353 SLSGAPQR 360
SL+ +P R
Sbjct: 242 SLAFSPNR 249
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILW-----DVGKGEALTVIDCHPDVINCLS 226
L GH V + N++ SA D +I W D G + H ++ +
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 227 FNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHS 286
DG+ ++ DKT+R+ D TG + V H S V I ++ +G SR
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS--VDIDKKASMIISG-SR-- 127
Query: 287 DRQVGLW 293
D+ + +W
Sbjct: 128 DKTIKVW 134
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 164 NLNEWIM--DLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDV 221
NLN++ + D GH + + P ++ASAG D I+LW++ +A+ + +V
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 222 INCLSFNRDGSRL-VTTCKDKTVRVLDPR 249
+ L+F+ + L T V LDP+
Sbjct: 241 FS-LAFSPNRYWLAAATATGIKVFSLDPQ 268
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 174 GHKRRVGYIEWHPTAENVVASAGF---DYLIILWDVGKGEA--LTVIDCHPDVINCLSF- 227
G K+++ +EWHP VA+A D I++WD+ T+ H I L +
Sbjct: 212 GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWC 271
Query: 228 NRDGSRLVTTCKDKTVRVLDPRTGLVISQ 256
++D L+++ +D TV + +P + +SQ
Sbjct: 272 HQDEHLLLSSGRDNTVLLWNPESAEQLSQ 300
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 173 HGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCH-------------P 219
GH++ + ++W E+++ S+G D ++LW+ E L+ P
Sbjct: 259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAP 318
Query: 220 DVINCLSFNR 229
D+ C SF+
Sbjct: 319 DLFACASFDN 328
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVG-KGEALTVIDCHPDVINCLSFNRD 230
+ GH+ RVG + W+ +V++S I DV + + H + L++ D
Sbjct: 172 MAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD 228
Query: 231 GSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQV 290
G +L + D V++ D R+ + H + A + + T G + D+Q+
Sbjct: 229 GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM--DKQI 286
Query: 291 GLWDENDLNTPLALETVDSSSGVL-FPYYDHDTRILFLAGKGDGNIRYYELTNE 343
W+ T + TVD+ S V + H I+ G D N+ + ++
Sbjct: 287 HFWNA---ATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 18/182 (9%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDV------GK-GEALTVIDCHPDVINC 224
L GH++ + W+P + SA D+ I LWD+ GK +A T+ H V+
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 225 LSFNRDGSRLV-TTCKDKTVRVLDPRTGLVI--SQGVCHPGTRSSKAVFIGDTGRIVTTG 281
+S++ L + D+ + + D R+ S V + F + I+ TG
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 282 FSRHSDRQVGLWDENDLNTPLALETVDSSSGVLF--PYYDHDTRILFLAGKGDGNIRYYE 339
+D+ V LWD +L L L + +S +F + H+ IL +G D + ++
Sbjct: 293 ---SADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGT-DRRLNVWD 346
Query: 340 LT 341
L+
Sbjct: 347 LS 348
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 164 NLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGK-GEALTVIDC 217
NL + HK + ++W P E ++AS+G D + +WD+ K GE + D
Sbjct: 305 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 160 GLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHP 219
G+ E+ +D G + + I + P + +AS D +I ++D+ G+ L ++ H
Sbjct: 150 GVESGKKEYSLDTRG--KFILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHA 206
Query: 220 DVINCLSFNRDGSRLVTTCKDKTVRVLDPR 249
I L+F+ D LVT D +++ D +
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH+ V ++ T + AS+ D I LWD+ G+ + ID P L+F+ D
Sbjct: 76 LEGHQLGVVSVDISHTLP-IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 232 SRLVTTCKDKTVRVLDPRTG 251
L T V + +G
Sbjct: 135 QYLATGTHVGKVNIFGVESG 154
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 204 WDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLD 247
WDVG + H D + + +N +GS++V+ D+ + + D
Sbjct: 275 WDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 10/128 (7%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEA-----LTVIDCHPDVINCLS 226
L GH V I P +++ SA D II+W + + E + H ++ +
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 227 FNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHS 286
+ DG ++ D T+R+ D TG + V H S A F D +IV S
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA-FSSDNRQIV----SGSR 148
Query: 287 DRQVGLWD 294
D+ + LW+
Sbjct: 149 DKTIKLWN 156
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 175 HKRRVGYIEWHPTAEN-VVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSR 233
H V + + P + N ++ S G+D L+ +W++ + T H +N ++ + DGS
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 229
Query: 234 LVTTCKDKTVRVLDPRTG 251
+ KD + D G
Sbjct: 230 CASGGKDGQAMLWDLNEG 247
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 191 VVASAGFDYLIILWDVGKGEA-------LTVIDCHPDVINCLSFNRDGSRLVTTCKDKTV 243
V+ S D +++W + + E + H ++ L+ +++ +++ DKT+
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 244 RVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWD 294
R+ D RTG + V H S A F D +I++ G ++R++ LW+
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVA-FSPDNRQILSAG----AEREIKLWN 146
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 10/128 (7%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEA-----LTVIDCHPDVINCLS 226
L GH V I P +++ SA D II+W + + E + H ++ +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 227 FNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHS 286
+ DG ++ D T+R+ D TG + V H S A F D +IV S
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA-FSSDNRQIV----SGSR 125
Query: 287 DRQVGLWD 294
D+ + LW+
Sbjct: 126 DKTIKLWN 133
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 173 HGHKRRVGYIEWHPTAEN-VVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
H V + + P + N ++ S G+D L+ +W++ + T H +N ++ + DG
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 232 SRLVTTCKDKTVRVLDPRTG 251
S + KD + D G
Sbjct: 205 SLCASGGKDGQAMLWDLNEG 224
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 189 ENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDP 248
V S D I +WD+ + H D +C+ + DG++L T D TVR D
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Query: 249 RTGLVISQ 256
R G + Q
Sbjct: 213 REGRQLQQ 220
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 175 HKRRVGYIEWHPTAENVVASAG--FDYLIILWDVGKGEALTVIDCHPDVINCL 225
H+ V + W P NV+A+ G D I +W+V G L+ +D H V + L
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 338
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 175 HKRRVGYIEWHPTAENVVASAG--FDYLIILWDVGKGEALTVIDCHPDVINCL 225
H+ V + W P NV+A+ G D I +W+V G L+ +D H V + L
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 327
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 164 NLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGK-GEALTVIDC 217
NL + HK + ++W P E ++AS+G D + +WD+ K GE + D
Sbjct: 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 17/170 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKG-------EALTVIDCHPDVINC 224
L GH++ + W+P + SA D+ I LWD+ +A + H V+
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 225 LSFNRDGSRLV-TTCKDKTVRVLDPRTGLVI--SQGVCHPGTRSSKAVFIGDTGRIVTTG 281
++++ L + D+ + + D R S V + F + I+ TG
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 282 FSRHSDRQVGLWDENDLNTPLALETVDSSSGVLF--PYYDHDTRILFLAG 329
+D+ V LWD +L L L + +S +F + H+ IL +G
Sbjct: 297 ---SADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSG 341
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 164 NLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGK-GEALTVIDC 217
NL + HK + ++W P E ++AS+G D + +WD+ K GE + D
Sbjct: 311 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 365
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 17/170 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKG-------EALTVIDCHPDVINC 224
L GH++ + W+P + SA D+ I LWD+ +A + H V+
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 225 LSFNRDGSRLV-TTCKDKTVRVLDPRTGLVI--SQGVCHPGTRSSKAVFIGDTGRIVTTG 281
++++ L + D+ + + D R S V + F + I+ TG
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 282 FSRHSDRQVGLWDENDLNTPLALETVDSSSGVLF--PYYDHDTRILFLAG 329
+D+ V LWD +L L L + +S +F + H+ IL +G
Sbjct: 299 ---SADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSG 343
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 175 HKRRVGYIEWHPTAENVVASAG--FDYLIILWDVGKGEALTVIDCHPDVINCL 225
H+ V + W P NV+A+ G D I +W+V G L+ +D H V + L
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 247
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 175 HKRRVGYIEWHPTAENVVASAGFDYLIILWD---VGKGEALTVIDCHPDVINCLSFN-RD 230
HK +V + E++P + ++A++ D + LWD + + H +N FN D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 231 GSRLVTTCKDKTVRVLDPRTGLVISQGVCHP 261
++L+TT + +RV Q + HP
Sbjct: 262 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 292
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 177 RRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCH--PDVINCLSFNRDGSRL 234
RRV +EWHPT VA IILWD + I D I + FN+ +
Sbjct: 73 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 132
Query: 235 VTTCKDKTVRVLDPRTGLVIS 255
+ + L +G VI
Sbjct: 133 LFVSSIRGATTLRDFSGSVIQ 153
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 164 NLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGK-GEALTVIDC 217
NL + HK + ++W P E ++AS+G D + +WD+ K GE + D
Sbjct: 313 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 367
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 17/170 (10%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKG-------EALTVIDCHPDVINC 224
L GH++ + W+P + SA D+ I LWD+ +A + H V+
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 225 LSFNRDGSRLV-TTCKDKTVRVLDPRTGLVI--SQGVCHPGTRSSKAVFIGDTGRIVTTG 281
++++ L + D+ + + D R S V + F + I+ TG
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 282 FSRHSDRQVGLWDENDLNTPLALETVDSSSGVLF--PYYDHDTRILFLAG 329
+D+ V LWD +L L L + +S +F + H+ IL +G
Sbjct: 301 ---SADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSG 345
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 175 HKRRVGYIEWHPTAENVVASAGFDYLIILWD---VGKGEALTVIDCHPDVINCLSFN-RD 230
HK +V + E++P + ++A++ D + LWD + + H +N FN D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 231 GSRLVTTCKDKTVRVLDPRTGLVISQGVCHP 261
++L+TT + +RV Q + HP
Sbjct: 263 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 177 RRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCH--PDVINCLSFNRDGSRL 234
RRV +EWHPT VA IILWD + I D I + FN+ +
Sbjct: 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133
Query: 235 VTTCKDKTVRVLDPRTGLVIS 255
+ + L +G VI
Sbjct: 134 LFVSSIRGATTLRDFSGSVIQ 154
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 195 AGF-DYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV 245
AG+ DY I +WDV KG ++++ H + ++ L + DG+ + D T+RV
Sbjct: 301 AGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV 352
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 192 VASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSF--NRDGSRLVTTCKDKTVRVLDPR 249
+ +A D LWDV G+ L H + CL + G+ V+ DK V D R
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 250 TGLVI 254
+G +
Sbjct: 229 SGQCV 233
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp)
pdb|1NB8|B Chain B, Structure Of The Catalytic Domain Of Usp7 (Hausp)
Length = 353
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 4 LYRGPVLDIKWNPFNDNIIASCSDDCTFRHVYGVH 38
+Y P D KW F+D++++ C+ + H YG H
Sbjct: 260 VYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGH 294
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|B Chain B, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|E Chain E, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
Length = 353
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 4 LYRGPVLDIKWNPFNDNIIASCSDDCTFRHVYGVH 38
+Y P D KW F+D++++ C+ + H YG H
Sbjct: 260 VYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGH 294
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 174 GHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDC----HPDVINCLSFNR 229
G + G + +E + A + LW++ + E+L V H D++ LS
Sbjct: 90 GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149
Query: 230 DGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQ 289
DG++ V+ KD +V+V D V+ H + A G ++ G D +
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG----EDGR 205
Query: 290 VGLWD 294
+ LWD
Sbjct: 206 ILLWD 210
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 4 LYRGPVLDIKWNPFNDNIIASCSDDCTFRHVYGVH 38
+Y P D KW F+D++++ C+ + H YG H
Sbjct: 429 VYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGH 463
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 10/137 (7%)
Query: 209 GEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV--LDPRTGLVISQGVCHPGTRSS 266
G + + + H ++I+ + G RL T DKT+++ ++ T +I H G
Sbjct: 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG---- 56
Query: 267 KAVFIGDTG--RIVTTGFSRHSDRQVGLW-DENDLNTPLALETVDSSSGVLFPYYDHDTR 323
V+ D + T S D +V +W +EN + +A+ V S+S + H+
Sbjct: 57 -PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 115
Query: 324 ILFLAGKGDGNIRYYEL 340
L L DG + E
Sbjct: 116 PLLLVASSDGKVSVVEF 132
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 161 LSGNLNEWIMDLHGHKRRVGYIEW-HPTAENVVASAGFDYLIILW--DVGKGEALTVIDC 217
+ G ++ I L GH+ V ++W HP ++AS +D +++W + G+ + V
Sbjct: 40 VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV 99
Query: 218 HPDVINCLSF--NRDGSRLVTTCKDKTVRVLD 247
H +N + + + G L+ D V V++
Sbjct: 100 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131
>pdb|1HG3|A Chain A, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|B Chain B, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|C Chain C, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|D Chain D, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|E Chain E, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|F Chain F, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|G Chain G, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|H Chain H, Crystal Structure Of Tetrameric Tim From Pyrococcus Woesei
Length = 225
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 28/152 (18%)
Query: 156 IPDGGLSGNL-----NEWIM-DLHGHKRR---VGYIEW----HPTAENVVASAGFDYLII 202
+ + G G L N I+ DL RR VG + +P VA+ DY+ +
Sbjct: 84 VKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSNNPAVSAAVAALNPDYVAV 143
Query: 203 LWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPG 262
G + V P+VI T + V+ ++P ++ G+ G
Sbjct: 144 EPPELIGTGIPVSKAKPEVI--------------TNTVELVKKVNPEVKVLCGAGIST-G 188
Query: 263 TRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWD 294
KA+ +G G ++ +G ++ D + +WD
Sbjct: 189 EDVKKAIELGTVGVLLASGVTKAKDPEKAIWD 220
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 173 HGHKRRVGYIEWHP-TAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
GH+ V + + P T + + SA +D + +W++ + + + H ++ ++ + DG
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 232 SRLVTTCKDKTVRVLDPRTG 251
S + KD V + D G
Sbjct: 574 SLCASGGKDGVVLLWDLAEG 593
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 190 NVVASAGFDYLIILWDVGK-----GEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVR 244
+++ SA D IILW + K G A + H + + + DG ++ D +R
Sbjct: 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455
Query: 245 VLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWD 294
+ D G+ + V H S A F D +IV S DR + LW+
Sbjct: 456 LWDLAAGVSTRRFVGHTKDVLSVA-FSLDNRQIV----SASRDRTIKLWN 500
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 161 LSGNLNEWIMDLHGHKRRVGYIEW-HPTAENVVASAGFDYLIILW--DVGKGEALTVIDC 217
+ G ++ I L GH+ V ++W HP ++AS +D +++W + G+ + V
Sbjct: 38 VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV 97
Query: 218 HPDVINCLSF--NRDGSRLVTTCKDKTVRVLD 247
H +N + + + G L+ D V V++
Sbjct: 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 212 LTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV--LDPRTGLVISQGVCHPGTRSSKAV 269
+ + + H ++I+ + G RL T DKT+++ ++ T +I H G V
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PV 56
Query: 270 FIGDTG--RIVTTGFSRHSDRQVGLW-DENDLNTPLALETVDSSSGVLFPYYDHDTRILF 326
+ D + T S D +V +W +EN + +A+ V S+S + H+ L
Sbjct: 57 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL 116
Query: 327 LAGKGDGNIRYYEL 340
L DG + E
Sbjct: 117 LVASSDGKVSVVEF 130
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 161 LSGNLNEWIMDLHGHKRRVGYIEW-HPTAENVVASAGFDYLIILW--DVGKGEALTVIDC 217
+ G ++ I L GH+ V ++W HP ++AS +D +++W + G+ + V
Sbjct: 38 VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV 97
Query: 218 HPDVINCLSF--NRDGSRLVTTCKDKTVRVLD 247
H +N + + + G L+ D V V++
Sbjct: 98 HSASVNSVQWAPHEYGPMLLVASSDGKVSVVE 129
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 212 LTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV--LDPRTGLVISQGVCHPGTRSSKAV 269
+ + + H ++I+ + G R+ T DKT+++ ++ T +I H G V
Sbjct: 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PV 56
Query: 270 FIGDTG--RIVTTGFSRHSDRQVGLW-DENDLNTPLALETVDSSSGVLFPYYDHDTRILF 326
+ D + T S D +V +W +EN + +A+ V S+S + H+ +
Sbjct: 57 WRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPML 116
Query: 327 LAGKGDGNIRYYEL 340
L DG + E
Sbjct: 117 LVASSDGKVSVVEF 130
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 161 LSGNLNEWIMDLHGHKRRVGYIEW-HPTAENVVASAGFDYLIILW--DVGKGEALTVIDC 217
+ G ++ I L GH+ V ++W HP ++AS +D +++W + G+ + V
Sbjct: 38 VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV 97
Query: 218 HPDVINCLSF--NRDGSRLVTTCKDKTVRVLD 247
H +N + + + G L+ D V V++
Sbjct: 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 212 LTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV--LDPRTGLVISQGVCHPGTRSSKAV 269
+ + + H ++I+ + G RL T DKT+++ ++ T +I H G V
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PV 56
Query: 270 FIGDTG--RIVTTGFSRHSDRQVGLW-DENDLNTPLALETVDSSSGVLFPYYDHDTRILF 326
+ D + T S D +V +W +EN + +A+ V S+S + H+ L
Sbjct: 57 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL 116
Query: 327 LAGKGDGNIRYYEL 340
L DG + E
Sbjct: 117 LVASSDGKVSVVEF 130
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 175 HKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVID-------CHPDVINCLSF 227
H + V + ++P ++ AS G D I+L++ G V + H + L++
Sbjct: 189 HTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 247
Query: 228 NRDGSRLVTTCKDKTVRVLDPRT 250
+ DG+++ + DKT+++ + T
Sbjct: 248 SPDGTKIASASADKTIKIWNVAT 270
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 161 LSGNLNEWIMDLHGHKRRVGYIEW-HPTAENVVASAGFDYLIILW--DVGKGEALTVIDC 217
+ G ++ I L GH+ V ++W HP ++AS +D + +W + G+ + V
Sbjct: 38 VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAV 97
Query: 218 HPDVINCLSF--NRDGSRLVTTCKDKTVRVLD 247
H +N + + + G L+ D V V++
Sbjct: 98 HSASVNSVQWAPHEYGPXLLVASSDGKVSVVE 129
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 173 HGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGS 232
H + +++ P+ E +++S+ D + +W V G + H + ++ G
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQ-DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR 191
Query: 233 RLVTTCKDKTVRVLDPRTGLVI----SQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDR 288
+++ D T+R+ + TG I + H G +S A+F+G ++ S+ ++
Sbjct: 192 NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV-NSIALFVGTDRQLHEISTSKKNNL 250
Query: 289 QVGLW 293
+ G +
Sbjct: 251 EFGTY 255
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 173 HGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGS 232
H + +++ P+ E +++S+ D + +W V G + H + ++ G
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQ-DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR 194
Query: 233 RLVTTCKDKTVRVLDPRTGLVI----SQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDR 288
+++ D T+R+ + TG I + H G +S A+F+G ++ S+ ++
Sbjct: 195 NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV-NSIALFVGTDRQLHEISTSKKNNL 253
Query: 289 QVGLW 293
+ G +
Sbjct: 254 EFGTY 258
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 243 VRVLDP-RTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGL 292
VR+ DP + G +S +C PGT S + GD G I G + DR V L
Sbjct: 178 VRLKDPVKMGPTVSP-ICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRL 227
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 174 GHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTV---IDCHPDVINCLSFNRD 230
GH + +++HP N++ S D+ + LW++ + + ++ H D + ++
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 231 GSRLVTTCKDKTVRV 245
G ++++ D ++++
Sbjct: 209 GEKIMSCGMDHSLKL 223
>pdb|2NVG|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 156 IPDGGLSGNLNEWIMDLHG-HKRRVGYIEWHPTAENV 191
+P GG+SG+ W HG H G I P EN+
Sbjct: 89 VPIGGVSGDFGGWFCPCHGAHYDSAGRIRKGPAPENL 125
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 174 GHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTV---IDCHPDVINCLSFNRD 230
GH + +++HP N++ S D+ + LW++ + + ++ H D + ++
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 231 GSRLVTTCKDKTVRV 245
G ++++ D ++++
Sbjct: 168 GEKIMSCGMDHSLKL 182
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 174 GHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTV---IDCHPDVINCLSFNRD 230
GH + +++HP N++ S D+ + LW++ + + ++ H D + ++
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 231 GSRLVTTCKDKTVRV 245
G ++++ D ++++
Sbjct: 172 GEKIMSCGMDHSLKL 186
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 174 GHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTV---IDCHPDVINCLSFNRD 230
GH + +++HP N++ S D+ + LW++ + + ++ H D + ++
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 231 GSRLVTTCKDKTVRV 245
G ++++ D ++++
Sbjct: 173 GEKIMSCGMDHSLKL 187
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 174 GHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTV---IDCHPDVINCLSFNRD 230
GH + +++HP N++ S D+ + LW++ + + ++ H D + ++
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 231 GSRLVTTCKDKTVRV 245
G ++++ D ++++
Sbjct: 172 GEKIMSCGMDHSLKL 186
>pdb|2NWF|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 28.9 bits (63), Expect = 7.1, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 156 IPDGGLSGNLNEWIMDLHG-HKRRVGYIEWHPTAENV 191
+P GG+SG+ W HG H G I P EN+
Sbjct: 89 VPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAPENL 125
>pdb|2NUM|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein
Length = 141
Score = 28.9 bits (63), Expect = 7.4, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 156 IPDGGLSGNLNEWIMDLHG-HKRRVGYIEWHPTAENV 191
+P GG+SG+ W HG H G I P EN+
Sbjct: 89 VPIGGVSGDFGGWFCPCHGSHFDSAGRIRKGPAPENL 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,519,107
Number of Sequences: 62578
Number of extensions: 644544
Number of successful extensions: 1426
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1097
Number of HSP's gapped (non-prelim): 290
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)