RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14130
(494 letters)
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 272 bits (698), Expect = 5e-86
Identities = 140/407 (34%), Positives = 214/407 (52%), Gaps = 46/407 (11%)
Query: 93 SKFRHVYGVHSKRDGCYDNV-PITRNAHDSHFCAANPKFVAVVTEVAGGGAFL------- 144
S+FRH GV ++ D + NV P T S+ A N +F+AV + G A L
Sbjct: 4 SRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGK 63
Query: 145 -------VL----PIHRVKL-------------------WYIPDGGLSGNLNEWIMDLHG 174
+L PI V W IP+ GL+ N+++ I+ L G
Sbjct: 64 LASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG 123
Query: 175 HKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRL 234
H ++VG + +HP+A NV+ASAG D ++ +WDV +G+A+ VI CH D I L +N DGS L
Sbjct: 124 HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLL 183
Query: 235 VTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWD 294
TT KDK + ++DPR G ++S H +S + ++ I+T G S+ RQ+ LWD
Sbjct: 184 CTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243
Query: 295 ENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTNERPYIHFLNQSL 354
+ +P + +D SS + P++D DT +L++ KG+GNIR +EL NER + F +
Sbjct: 244 TRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER--LTFCSSYS 301
Query: 355 SGAPQRGLGFMPKRGCDVTQCEIFRFFKLHTTRNMCEPISMIVPRKS--DQFQDDLYPDT 412
S P +GL MPK D +CEI RF+ L T ++ I M++PRK + Q D+YP T
Sbjct: 302 SVEPHKGLCMMPKWSLDTRKCEIARFYAL-TYHSLY-TIQMLLPRKQADSELQVDVYPPT 359
Query: 413 AAPVPALSAADWYKGVNRPPVLMSMRTGVNVCTHKPKAFRPNEATRS 459
A PA++A +++ G N P++ M + P+ + + S
Sbjct: 360 FADHPAITADEYFSGGNAEPLVYDMSAVFD--GTSPELMGASALSPS 404
Score = 30.2 bits (68), Expect = 2.9
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 6 RGPVLDIKWNPFNDNIIASCSDDCT 30
GP++D+ +NPF+ + + S+D T
Sbjct: 75 EGPIIDVAFNPFDPQKLFTASEDGT 99
>gnl|CDD|220080 pfam08954, DUF1900, Domain of unknown function (DUF1900). This
domain is predominantly found in the structural protein
coronin, and is duplicated in some sequences. It has no
known function.
Length = 136
Score = 228 bits (585), Expect = 7e-74
Identities = 81/138 (58%), Positives = 103/138 (74%), Gaps = 3/138 (2%)
Query: 301 PLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSGAPQR 360
PLA E +D+SSGVL P+YD DT +L+LAGKGDGNIRYYE+T+E PY+H+L++ S PQ+
Sbjct: 1 PLATEELDTSSGVLIPFYDEDTGLLYLAGKGDGNIRYYEVTDEEPYLHYLSEYTSTEPQK 60
Query: 361 GLGFMPKRGCDVTQCEIFRFFKLHTTRNMCEPISMIVPRK-SDQFQDDLYPDTAAPVPAL 419
G F+PKR DV +CEI RF+KL EPIS IVPRK S+ FQ+DLYPDTA PAL
Sbjct: 61 GFCFLPKRALDVKKCEIARFYKLTNDS--IEPISFIVPRKNSELFQEDLYPDTAGTEPAL 118
Query: 420 SAADWYKGVNRPPVLMSM 437
+A +W G N+ P L+S+
Sbjct: 119 TAEEWLSGKNKEPQLISL 136
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 186 bits (473), Expect = 2e-52
Identities = 127/395 (32%), Positives = 200/395 (50%), Gaps = 44/395 (11%)
Query: 45 YDNVPITRNAHDSHFCAANPKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSK 104
+D++ I DS A + FVAV EV GGG L+ I +R + G S
Sbjct: 19 FDDLRICSRVIDSCGIACSSGFVAVPWEVEGGG--LIGAIRLENQMRKPPVIKLKGHTS- 75
Query: 105 RDGCYDNVPITRNAHDSHFCAANPKFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGN 164
I D F NP F ++ A G L +++W IP +
Sbjct: 76 --------SIL----DLQF---NPCFSEIL---ASGSEDLT-----IRVWEIPHN--DES 110
Query: 165 LNEWIMD----LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDV-GKGEALTVIDCHP 219
+ E I D L GHK+++ I+W+P ++ S+GFD + +WD+ + A + P
Sbjct: 111 VKE-IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MP 167
Query: 220 DVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFI----GDTG 275
++ L +N G+ L TC K + ++DPR + S H G +++K ++I GD
Sbjct: 168 KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN 227
Query: 276 RIVTTGFSRHSDRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNI 335
I++TGFS+++ R++ LWD + + L ++D++S L P+YD T +++L GKGDGN
Sbjct: 228 YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287
Query: 336 RYYELTNERPYIHFLNQSLSGAPQRGLGFMPKRGCDVTQCEIFRFFKLHTTRNMCEPISM 395
RYY+ + I +N+ S +P R GF+PK+ CDV +CEI R +K ++ PIS
Sbjct: 288 RYYQ--HSLGSIRKVNEYKSCSPFRSFGFLPKQICDVYKCEIGRVYKNENNSSI-RPISF 344
Query: 396 IVPRK-SDQFQDDLYPDTAAPVPALSAADWYKGVN 429
VPRK +FQ+DLYP P S+ +W G +
Sbjct: 345 YVPRKNPTKFQEDLYPPILMHDPERSSRNWIDGKD 379
Score = 33.0 bits (75), Expect = 0.38
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 3 KLYRGPVLDIKWNPFNDNIIASCSDDCTFR 32
K + +LD+++NP I+AS S+D T R
Sbjct: 71 KGHTSSILDLQFNPCFSEILASGSEDLTIR 100
>gnl|CDD|149883 pfam08953, DUF1899, Domain of unknown function (DUF1899). This set
of domains is found in various eukaryotic proteins.
Function is unknown.
Length = 65
Score = 119 bits (300), Expect = 5e-33
Identities = 37/64 (57%), Positives = 53/64 (82%)
Query: 88 RGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVAVVTEVAGGGAFLVLP 147
R VRSSKFRHV+G +K++ CY+++ I++NA DS+FCA NPKF+AV+ E +GGGAF VLP
Sbjct: 1 RFVRSSKFRHVFGQPAKKEQCYEDIRISKNAWDSNFCAVNPKFLAVIWEASGGGAFAVLP 60
Query: 148 IHRV 151
+++
Sbjct: 61 LNKT 64
Score = 105 bits (265), Expect = 5e-28
Identities = 31/56 (55%), Positives = 47/56 (83%)
Query: 31 FRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVAVVTEVAGGGAFLVLPIHR 86
FRHV+G +K++ CY+++ I++NA DS+FCA NPKF+AV+ E +GGGAF VLP+++
Sbjct: 8 FRHVFGQPAKKEQCYEDIRISKNAWDSNFCAVNPKFLAVIWEASGGGAFAVLPLNK 63
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 87.0 bits (216), Expect = 5e-19
Identities = 53/196 (27%), Positives = 95/196 (48%), Gaps = 18/196 (9%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
++LW + G + L GH V + + P +++S+ D I +WDV G+
Sbjct: 75 IRLWDLETGEC-------VRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGK 126
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVF 270
LT + H D +N ++F+ DG+ + ++ +D T+++ D RTG ++ H G +S F
Sbjct: 127 CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS-VAF 185
Query: 271 IGDTGRIVTTGFSRHSDRQVGLWDENDLNTPLALETVDS-SSGVLFPYYDHDTRILFLAG 329
D +++++ SD + LW DL+T L T+ +GV + D +L +G
Sbjct: 186 SPDGEKLLSSS----SDGTIKLW---DLSTGKCLGTLRGHENGVNSVAFSPDGYLLA-SG 237
Query: 330 KGDGNIRYYELTNERP 345
DG IR ++L
Sbjct: 238 SEDGTIRVWDLRTGEC 253
Score = 74.7 bits (184), Expect = 7e-15
Identities = 48/197 (24%), Positives = 81/197 (41%), Gaps = 18/197 (9%)
Query: 149 HRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGK 208
+K+W + G L + L GH V + +AS D I LWD+
Sbjct: 31 GTIKVWDLETGEL-------LRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLET 82
Query: 209 GEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKA 268
GE + + H ++ ++F+ DG L ++ +DKT++V D TG ++ H T +
Sbjct: 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH--TDWVNS 140
Query: 269 VFIGDTGRIVTTGFSRHSDRQVGLWDENDLNTPLALET-VDSSSGVLFPYYDHDTRILFL 327
V G V + D + LW DL T + T + V + D L
Sbjct: 141 VAFSPDGTFVASS---SQDGTIKLW---DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS 194
Query: 328 AGKGDGNIRYYELTNER 344
+ DG I+ ++L+ +
Sbjct: 195 SS-SDGTIKLWDLSTGK 210
Score = 65.0 bits (159), Expect = 1e-11
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+KLW + G + + L GH+ V + + P ++AS D I +WD+ GE
Sbjct: 201 IKLWDLSTG-------KCLGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGE 252
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV 245
+ + H + + L+++ DG RL + D T+R+
Sbjct: 253 CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287
Score = 63.9 bits (156), Expect = 3e-11
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 15/145 (10%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
+KLW + G + L GH V + + P E +++S+ D I LWD+ G+
Sbjct: 159 IKLWDLRTGKC-------VATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGK 210
Query: 211 ALTVIDCHPDVINCLSFNRDGSRLVTTC-KDKTVRVLDPRTGLVISQGVCHPGTRSSKAV 269
L + H + +N ++F+ DG L+ + +D T+RV D RTG + H + +S A
Sbjct: 211 CLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLA- 268
Query: 270 FIGDTGRIVTTGFSRHSDRQVGLWD 294
+ D R+ + D + +WD
Sbjct: 269 WSPDGKRLASGSA----DGTIRIWD 289
Score = 61.2 bits (149), Expect = 2e-10
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 11/173 (6%)
Query: 174 GHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSR 233
GH V + + P ++A+ D I +WD+ GE L + H + ++ + DG+
Sbjct: 7 GHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65
Query: 234 LVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLW 293
L + DKT+R+ D TG + H SS V GRI+++ D+ + +W
Sbjct: 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSS--VAFSPDGRILSSSS---RDKTIKVW 120
Query: 294 DENDLNTPLALETVDSS-SGVLFPYYDHDTRILFLAGKGDGNIRYYELTNERP 345
D L + V F D + + DG I+ ++L +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAF---SPDGTFVA-SSSQDGTIKLWDLRTGKC 169
Score = 57.7 bits (140), Expect = 3e-09
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 10/133 (7%)
Query: 214 VIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGD 273
+ H + C++F+ DG L T D T++V D TG ++ H G D
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPV-RDVAASAD 62
Query: 274 TGRIVTTGFSRHSDRQVGLWDENDLNTPLALETVDSS-SGVLFPYYDHDTRILFLAGKGD 332
+ + SD+ + LWD L S S V F D RIL + D
Sbjct: 63 GTYLASGS----SDKTIRLWDLETGECVRTLTGHTSYVSSVAF---SPDGRIL-SSSSRD 114
Query: 333 GNIRYYELTNERP 345
I+ +++ +
Sbjct: 115 KTIKVWDVETGKC 127
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 72.4 bits (176), Expect = 1e-13
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 8/180 (4%)
Query: 164 NLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVIN 223
+ I L GH V + + P + + + + D I LWD+ G+ L+ + H D ++
Sbjct: 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS 202
Query: 224 CLSFNRDGSRLVTTC-KDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGF 282
L+F+ DG L+ + D T+R+ D TG ++ + S + F D + +
Sbjct: 203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSVVSSFSPDGSLLASGS- 260
Query: 283 SRHSDRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTN 342
SD + LWD ++ L + SSS VL + D ++L DG +R ++L
Sbjct: 261 ---SDGTIRLWDLRSSSSLLRTLSGHSSS-VLSVAFSPDGKLLASGSS-DGTVRLWDLET 315
Score = 61.3 bits (147), Expect = 5e-10
Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 15/193 (7%)
Query: 149 HRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDV-G 207
++LW + G L GH V + P +++AS D I LWD+
Sbjct: 221 GTIRLWDLSTG------KLLRSTLSGHSDSV-VSSFSPD-GSLLASGSSDGTIRLWDLRS 272
Query: 208 KGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSK 267
L + H + ++F+ DG L + D TVR+ D TG ++S
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332
Query: 268 AVFIGDTGRIVTTGFSRHSDRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFL 327
++ G ++ +G S D + LWD LE + V F +
Sbjct: 333 SLSFSPDGSLLVSGGS--DDGTIRLWDLRTGKPLKTLEGHSNVLSVSF----SPDGRVVS 386
Query: 328 AGKGDGNIRYYEL 340
+G DG +R ++L
Sbjct: 387 SGSTDGTVRLWDL 399
Score = 60.1 bits (144), Expect = 1e-09
Identities = 55/304 (18%), Positives = 97/304 (31%), Gaps = 25/304 (8%)
Query: 6 RGPVLDIKWNPFNDNIIASCSDDCTFR-------HVYGVHSKRDGCYDNVPITRNAHDSH 58
V + ++P + + S D T + + ++ + +
Sbjct: 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214
Query: 59 FCAANPKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNA 118
++ + + G L H V S DG + +
Sbjct: 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDG---TIRLWDLR 271
Query: 119 HDSHFCAANPKFVAVVTEVAGGGAFLVLPI----HRVKLWYIPDGGLSGNLNEWIMDLHG 174
S + V VA +L V+LW L + L G
Sbjct: 272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW-----DLETGKLLSSLTLKG 326
Query: 175 HKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRL 234
H+ V + + P +V+ D I LWD+ G+ L ++ H + +SF+ DG +
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVV 385
Query: 235 VTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWD 294
+ D TVR+ D TG ++ H R + F D + + SD + LWD
Sbjct: 386 SSGSTDGTVRLWDLSTGSLLRNLDGHTS-RVTSLDFSPDGKSLASGS----SDNTIRLWD 440
Query: 295 ENDL 298
Sbjct: 441 LKTS 444
Score = 47.4 bits (111), Expect = 1e-05
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 5/134 (3%)
Query: 215 IDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG--LVISQGVCHPGTRSSKAVFIG 272
+ H D I ++F+ DG L++ D T+++ D G L+ S H + S A+
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 273 DTGRIVTTGFSRHSDRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGD 332
D I+ S D V LWD + + S V + D ++L D
Sbjct: 121 DGNSILLASSSL--DGTVKLWDLSTPGKLIR-TLEGHSESVTSLAFSPDGKLLASGSSLD 177
Query: 333 GNIRYYELTNERPY 346
G I+ ++L +P
Sbjct: 178 GTIKLWDLRTGKPL 191
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 41.5 bits (98), Expect = 2e-05
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 208 KGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLD 247
GE L + H + ++F+ DG L + D T+++ D
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 33.4 bits (77), Expect = 0.013
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 169 IMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWD 205
+ L GH V + + P +AS D I LWD
Sbjct: 5 LKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
Score = 30.7 bits (70), Expect = 0.11
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 6 RGPVLDIKWNPFNDNIIASCSDDCTFR 32
GPV + ++P + +AS SDD T +
Sbjct: 12 TGPVTSVAFSP-DGKYLASGSDDGTIK 37
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 40.4 bits (95), Expect = 4e-05
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 209 GEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV 245
G+ L + H + ++F+ DG+ L + D TVRV
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37
Score = 33.9 bits (78), Expect = 0.009
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 169 IMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWD 205
+ L GH V + + P N++AS D + +WD
Sbjct: 4 LRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
Score = 30.8 bits (70), Expect = 0.099
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 7 GPVLDIKWNPFNDNIIASCSDDCTFR 32
GPV + ++P + N++AS SDD T R
Sbjct: 12 GPVTSVAFSP-DGNLLASGSDDGTVR 36
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 38.9 bits (90), Expect = 0.006
Identities = 41/197 (20%), Positives = 86/197 (43%), Gaps = 26/197 (13%)
Query: 169 IMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFN 228
+++L + G I W+ ++ VAS+ F+ ++ +WDV + + +T + H + + ++
Sbjct: 526 VVELASRSKLSG-ICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYS 584
Query: 229 R-DGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKA-----VFIGDTGRIVTTGF 282
D + L + D +V++ G+ I GT +KA F ++GR + G
Sbjct: 585 SADPTLLASGSDDGSVKLWSINQGVSI-------GTIKTKANICCVQFPSESGRSLAFG- 636
Query: 283 SRHSDRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELT- 341
+D +V +D + PL S + + D T ++ D ++ ++L+
Sbjct: 637 --SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSST---LVSSSTDNTLKLWDLSM 691
Query: 342 -----NERPYIHFLNQS 353
NE P F+ +
Sbjct: 692 SISGINETPLHSFMGHT 708
Score = 32.8 bits (74), Expect = 0.48
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 166 NEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCL 225
++ + ++ H++RV I++ ++AS D + LW + +G ++ I ++ C+
Sbjct: 565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANIC-CV 623
Query: 226 SFNRDGSR-LVTTCKDKTVRVLDPRT-GLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFS 283
F + R L D V D R L + + H T S V D+ +V S
Sbjct: 624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSY--VRFVDSSTLV----S 677
Query: 284 RHSDRQVGLWD 294
+D + LWD
Sbjct: 678 SSTDNTLKLWD 688
>gnl|CDD|188579 TIGR04064, rSAM_nif11, nif11-like peptide radical SAM maturase.
Members of this family are radical SAM enzymes that
occur co-clustered with nif11-related ribosomal natural
product (RNP) precursors described by TIGRFAMs model
TIGR03798. Homology within the bacteriocin family
reflects largely constraints on the leader peptide, tied
to processes such as cleavage and export, and members
associate with various families of maturation enzyme.
The gene symbol assigned is nlpM, for Nif11-class Leader
Peptide family Radical SAM Maturase [Cellular processes,
Toxin production and resistance].
Length = 458
Score = 37.5 bits (87), Expect = 0.015
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 58 HFCAANPKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRN 117
FC A +VAV +V GG + P HRF G+R K V R Y P+T +
Sbjct: 331 FFCGAGRNYVAV--DVTGG----IYPCHRFVGLREYKLGGVGAEDPNRGL-YLESPVTTS 383
Query: 118 AH 119
Sbjct: 384 EE 385
>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional.
Length = 856
Score = 30.3 bits (69), Expect = 3.0
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 276 RIVTTGFSRHSDRQ-VGLWDENDLNTPLALETVDS-SSGVLFPYYDHDTRILFLAGKGDG 333
+ SR D+ LW E L AL V G LFPY D D +L L D
Sbjct: 35 TALLHALSRLVDQALRRLWQECGLPAGAALVAVGGYGRGELFPYSDVDLLVL-LPDAPDA 93
Query: 334 NIR 336
+
Sbjct: 94 ALD 96
>gnl|CDD|224091 COG1169, MenF, Isochorismate synthase [Coenzyme metabolism /
Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 423
Score = 28.8 bits (65), Expect = 6.5
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 9/89 (10%)
Query: 338 YELTNERPYIHFLNQSLSGAPQRGLGFMPKRGCDVTQCEIFRFFKLHTTRNMCEPISMIV 397
+ FL + A R F ++G + + R F T P +V
Sbjct: 62 ARFQDPGKARFFLREEFEQALLRLFAFAGRQGFRLPRLVGARPFDPKT------PALFVV 115
Query: 398 PRKSDQFQDDLYPDTAA---PVPALSAAD 423
P + + A P+ L +
Sbjct: 116 PEEQLRTDAQQPLLFARTFVPLQTLQVLE 144
>gnl|CDD|234377 TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated
beta-propeller protein. Members of this protein family
consist of seven repeats each of the YVTN family
beta-propeller repeat (see TIGR02276). Members occur
invariably as part of a transport operon that is
associated with PQQ-dependent catabolism of alcohols
such as phenylethanol.
Length = 300
Score = 28.9 bits (65), Expect = 6.8
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 225 LSFNRDGSRL-VTTCKDKTVRVLDPRTGLVI 254
++F++DG L V TV+V+DP TG V+
Sbjct: 36 ITFSKDGKLLYVCASDSDTVQVIDPATGEVL 66
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.451
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,376,940
Number of extensions: 2434046
Number of successful extensions: 1772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1742
Number of HSP's successfully gapped: 35
Length of query: 494
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 393
Effective length of database: 6,457,848
Effective search space: 2537934264
Effective search space used: 2537934264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.3 bits)