RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14130
(494 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 70.2 bits (170), Expect = 7e-14
Identities = 39/234 (16%), Positives = 71/234 (30%), Gaps = 24/234 (10%)
Query: 14 WNPFNDNIIASCSDDCTFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVAVVTEV 73
N + I S S D T + + C R + +A +
Sbjct: 108 SIMPNGDHIVSASRDKTIKMW---EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 164
Query: 74 AGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVAV 133
R V + + + H C P + + S + K
Sbjct: 165 Q---------TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 215
Query: 134 VTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVA 193
G+ +K+W + G +M L GH V + +H +
Sbjct: 216 PGPFLLSGSR----DKTIKMWDVSTG-------MCLMTLVGHDNWVRGVLFHSG-GKFIL 263
Query: 194 SAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLD 247
S D + +WD + ++ H + L F++ +VT D+TV+V +
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 68.6 bits (166), Expect = 2e-13
Identities = 45/307 (14%), Positives = 89/307 (28%), Gaps = 24/307 (7%)
Query: 6 RGPVLDIKWNPFNDNIIASCSDDCTFR---------------HVYGVHSKRDGCYDNVPI 50
R PV + ++P +++ S S+D T + H V +
Sbjct: 17 RSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75
Query: 51 TRNAHDSHFCAANPKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYD 110
+ +A + F + T + I S R + Y
Sbjct: 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135
Query: 111 NVPITRNAHDSHFCAANPKFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIM 170
T + N + + + + + + + W
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195
Query: 171 D---LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSF 227
+ + + + S D I +WDV G L + H + + + F
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255
Query: 228 NRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSD 287
+ G +++ DKT+RV D + + H +S F +VT D
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS-LDFHKTAPYVVTGS----VD 310
Query: 288 RQVGLWD 294
+ V +W+
Sbjct: 311 QTVKVWE 317
Score = 49.0 bits (115), Expect = 6e-07
Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 9/178 (5%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH+ V + +HP +V+ SA D I +WD G+ + H D + +SF+ G
Sbjct: 13 LSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 232 SRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVG 291
L + D T+++ D + + + S + + IV+ +
Sbjct: 72 KLLASCSADMTIKLWDFQGF-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT------ 124
Query: 292 LWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTNERPYIHF 349
++ T ++T + + L + D +R + + +
Sbjct: 125 -IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
Score = 42.0 bits (97), Expect = 9e-05
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 203 LWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPG 262
W E + H + + F+ S +V+ +D T++V D TG H
Sbjct: 2 EWIPRPPE-KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 70.5 bits (171), Expect = 7e-14
Identities = 38/300 (12%), Positives = 72/300 (24%), Gaps = 25/300 (8%)
Query: 6 RGPVLDIKWNPFNDNIIASCSDDCTFRHVYGVHSKR----DGCYDNVPITRNAHDSHFCA 61
+ + W + ++ S S D + + V A ++ A
Sbjct: 55 LAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 62 ANPKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDS 121
V G + ++ + ++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 122 HFCAANPKFVAVVTEVAGGGAFLVLPI-----HRVKLWYIPDGGLSGNLNEWIMDLHGHK 176
L + KLW + +G GH+
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-------MCRQTFTGHE 226
Query: 177 RRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDV--INCLSFNRDGSRL 234
+ I + P N A+ D L+D+ + L + I +SF++ G L
Sbjct: 227 SDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 235 VTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWD 294
+ D V D H S D + T D + +W+
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSC-LGVTDDGMAVATGS----WDSFLKIWN 340
Score = 65.1 bits (157), Expect = 4e-12
Identities = 29/169 (17%), Positives = 47/169 (27%), Gaps = 6/169 (3%)
Query: 168 WIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSF 227
+ S D LWDV +G H IN + F
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234
Query: 228 NRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSD 287
+G+ T D T R+ D R + +V +GR++ G + D
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG---YDD 291
Query: 288 RQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIR 336
+WD + L + V D + D ++
Sbjct: 292 FNCNVWDALKADRAGVLA--GHDNRVSCLGVTDDGMAVATGSW-DSFLK 337
Score = 42.0 bits (97), Expect = 9e-05
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
L GH ++ + W ++ SA D +I+WD + I + ++ G
Sbjct: 51 LRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 232 SRLVTTCKDKTVRVLDPRT 250
+ + D + + +T
Sbjct: 110 NYVACGGLDNICSIYNLKT 128
Score = 35.1 bits (79), Expect = 0.017
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 218 HPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG 251
H I + + D LV+ +D + + D T
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT 87
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 62.1 bits (149), Expect = 4e-11
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 22/163 (13%)
Query: 149 HRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGK 208
V++W G L L+ GHK V + + V S D + LW++
Sbjct: 227 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQN 285
Query: 209 GEALT------------VIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQ 256
+ H D + ++ ++ +++ KD+ V D ++G +
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 345
Query: 257 GVCHPGTRSSKAV-----FIGDTGRIVTTGFSRHSDRQVGLWD 294
H + S AV + T D + +W
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGS----GDCKARIWK 384
Score = 53.3 bits (126), Expect = 3e-08
Identities = 34/268 (12%), Positives = 71/268 (26%), Gaps = 26/268 (9%)
Query: 6 RGPVLDIKWNPFNDNIIASCSDDCTFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPK 65
+ + ++P + +A+ ++D R + K + D
Sbjct: 121 DLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179
Query: 66 FVAVVTEV-----------------AGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGC 108
+ V G V P S R V S+
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239
Query: 109 YDNVPITRNAHDSHFCAANP-KFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNE 167
+ + + H + F V G + + ++ + N
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299
Query: 168 WIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCL-- 225
+ GHK V + + + S D ++ WD G L ++ H + + +
Sbjct: 300 CEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358
Query: 226 ----SFNRDGSRLVTTCKDKTVRVLDPR 249
S + + T D R+ +
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWKYK 386
Score = 36.3 bits (82), Expect = 0.008
Identities = 25/200 (12%), Positives = 51/200 (25%), Gaps = 29/200 (14%)
Query: 14 WNPFNDNIIASCSDDCTFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVAVVTEV 73
+P + IA+ S D R D+ + H + F V
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV--VFTRDGQSV 269
Query: 74 AGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVAV 133
G + + + + + + + + N +++
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ----NDEYILS 325
Query: 134 VTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTA----- 188
++ V W G ++ L GH+ V + +
Sbjct: 326 GSKD-----------RGVLFWDKKSG-------NPLLMLQGHRNSVISVAVANGSSLGPE 367
Query: 189 ENVVASAGFDYLIILWDVGK 208
NV A+ D +W K
Sbjct: 368 YNVFATGSGDCKARIWKYKK 387
Score = 35.5 bits (80), Expect = 0.012
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 218 HPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSS 266
H V+ C+ F+ DG L T C +KT +V G ++++
Sbjct: 61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108
Score = 32.8 bits (73), Expect = 0.086
Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 23/195 (11%)
Query: 168 WIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSF 227
I+ + + Y + + + + S D + +WD+ G+ + V
Sbjct: 154 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213
Query: 228 NRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRH-- 285
DG + D+ VRV D T G S G + + F+R
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSET------GFLVERLDSENESGTGHKDSVYSVVFTRDGQ 267
Query: 286 ------SDRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRI---------LFLAGK 330
DR V LW+ + N +T +S + + D + L+G
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327
Query: 331 GDGNIRYYELTNERP 345
D + +++ + P
Sbjct: 328 KDRGVLFWDKKSGNP 342
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 55.7 bits (132), Expect = 4e-09
Identities = 31/256 (12%), Positives = 55/256 (21%), Gaps = 16/256 (6%)
Query: 6 RGPVLDIKWNPFNDNIIASCSDDCTFRHVY------------GVHSKRDGCYDNVPITRN 53
K +P + AS R V S ++
Sbjct: 58 SHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116
Query: 54 AHDSHFCAANPKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVP 113
V + G S +
Sbjct: 117 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 176
Query: 114 ITRNAHDSHFCAANPKFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIMDLH 173
+ A + L+ DG +G + +
Sbjct: 177 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGTKTGVFEDDSLKNV 235
Query: 174 GHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVIN-CLSFNRDGS 232
H V + W P +ASA D I +W+V + I + + L
Sbjct: 236 AHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 294
Query: 233 RLVTTCKDKTVRVLDP 248
LV+ + + ++P
Sbjct: 295 ALVSISANGFINFVNP 310
Score = 42.6 bits (98), Expect = 6e-05
Identities = 9/74 (12%), Positives = 17/74 (22%), Gaps = 2/74 (2%)
Query: 178 RVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTT 237
+ P + + G + VG + H + G +
Sbjct: 19 TAVVLGNTPAGDKIQYCNGTS--VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76
Query: 238 CKDKTVRVLDPRTG 251
VR+ D
Sbjct: 77 DVHGNVRIWDTTQT 90
Score = 41.4 bits (95), Expect = 2e-04
Identities = 11/78 (14%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 217 CHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGR 276
H + L+++ DG+++ + DKT+++ + T V + I
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 295
Query: 277 IVTTGFSRHSDRQVGLWD 294
+V+ ++ + +
Sbjct: 296 LVSIS----ANGFINFVN 309
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 51.0 bits (120), Expect = 2e-07
Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 182 IEWHPTAENVVASAGFDYLIILWDV--GKGEALTVIDCHPDVINCLSFNRDGSRLVTTCK 239
W+ +A ++ + +++ K + + H + + + D +R+VT
Sbjct: 13 HAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71
Query: 240 DKTVRVLDP 248
D+ V
Sbjct: 72 DRNAYVWTL 80
Score = 47.2 bits (110), Expect = 2e-06
Identities = 36/322 (11%), Positives = 72/322 (22%), Gaps = 30/322 (9%)
Query: 6 RGPVLDIKWNPFNDNIIASCSDDCTFR----------HVYGVHSKRDGCYDNVPITRNAH 55
G V + W P + N I +C D +
Sbjct: 51 NGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 109
Query: 56 DSHFCAANPKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYD----- 110
+ + + + + V S + + + +
Sbjct: 110 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 169
Query: 111 -NVPITRNAHDSHFCAANPKFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWI 169
+ + F ++ E + ++ + +
Sbjct: 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 229
Query: 170 MDLHGHKRRVGYI-----EWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINC 224
D + E+ + +AG D +L+ DV
Sbjct: 230 ADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQ 289
Query: 225 LSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTG---RIVTTG 281
S +R DK + H + S +V G + TTG
Sbjct: 290 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL-HKNSVSQISVLSGGKAKCSQFCTTG 348
Query: 282 FSRHSDRQVGLWDENDLNTPLA 303
D + +WD L + L
Sbjct: 349 ----MDGGMSIWDVRSLESALK 366
Score = 45.2 bits (105), Expect = 1e-05
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 218 HPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRI 277
+ I+C ++N+D +++ + V + + + V
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 278 VTTGFSRHSDRQVGLWD 294
+ T +DR +W
Sbjct: 66 IVTC---GTDRNAYVWT 79
Score = 36.0 bits (81), Expect = 0.009
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 149 HRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWD 205
H V ++ SGN + +L H +V ++W P N + + G D +W
Sbjct: 29 HEVHIY-----EKSGNKWVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWT 79
Score = 35.2 bits (79), Expect = 0.013
Identities = 39/362 (10%), Positives = 88/362 (24%), Gaps = 37/362 (10%)
Query: 8 PVLDIKWNPFNDNIIASCSDDCTFRHVYGVHSKRDGCYDNVP--------ITRNAHDSHF 59
P+ WN + IA C ++ +Y + + + +
Sbjct: 9 PISCHAWNK-DRTQIAICPNNHEVH-IYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI 66
Query: 60 CAANPKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAH 119
A V + G L I R + I
Sbjct: 67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126
Query: 120 DSHFCAANPKFVAVVTEVAGGGAFLVLPIH-------RVKLWYIPDGGLSG--------- 163
++ + + + V + + +++ +
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 186
Query: 164 --NLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDV 221
E + + V + + + VA D + L D K A+ +
Sbjct: 187 KMPFGELMFESSSSCGWVHGVCFSAN-GSRVAWVSHDSTVCLADADKKMAVATLASETLP 245
Query: 222 INCLSFNRDGSRLVTTCKDKTVR-VLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTT 280
+ ++F + S + V D G + G +SS+
Sbjct: 246 LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR------- 298
Query: 281 GFSRHSDRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYEL 340
++ D++ L +S S + F DG + +++
Sbjct: 299 ERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
Query: 341 TN 342
+
Sbjct: 359 RS 360
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 50.2 bits (118), Expect = 3e-07
Identities = 49/332 (14%), Positives = 99/332 (29%), Gaps = 26/332 (7%)
Query: 17 FNDNIIASCSDDCTFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVAVVTEVAGG 76
F N I S SDD T + V+ + + T H + + +
Sbjct: 25 FCGNRIVSGSDDNTLK-VWSAVTGK------CLRTLVGHTGGVWS-----SQMRDNIIIS 72
Query: 77 GAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVAVVTE 136
G+ + R + + D+ + + +
Sbjct: 73 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132
Query: 137 VAGGGAFLVLPIHRVK--LWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVAS 194
+ G A + + + + D + E LH + + V S
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVS 192
Query: 195 AGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVI 254
D I +WDV G + + H + + + + LV+ D TV++ D +TG +
Sbjct: 193 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 250
Query: 255 SQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWDEND---LNTPLALETVDSSS 311
+S+ + ++T+ D V LWD + + LE+ S
Sbjct: 251 QTLQGPNKHQSAVTCLQFNKNFVITSS----DDGTVKLWDLKTGEFIRNLVTLESGGSGG 306
Query: 312 GVLFPYYDHDTRILFLA---GKGDGNIRYYEL 340
V + + + G + + +
Sbjct: 307 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
Score = 45.6 bits (106), Expect = 7e-06
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 204 WDVGKGEALTVIDCHPD-VINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPG 262
W G+ ++ V+ H D VI CL F G+R+V+ D T++V TG + V H G
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
Score = 40.2 bits (92), Expect = 4e-04
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRD 230
L GH V N + S D + +W G+ L + H + +
Sbjct: 12 LKGHDDHV-ITCLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 49.4 bits (116), Expect = 4e-07
Identities = 22/246 (8%), Positives = 54/246 (21%), Gaps = 15/246 (6%)
Query: 11 DIKWNPFNDNIIASCSDDCTFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVAVV 70
+P + S + V R YD A + +
Sbjct: 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD----AETLSRRKAFEAPRQITMLA 141
Query: 71 TEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKF 130
G + + + + S Y + +
Sbjct: 142 WARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP 201
Query: 131 VAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAEN 190
+ + + G + + ++ +P
Sbjct: 202 FYTARKDIDPADPTAYR-TGLLTMDLETGEM------AMREVRIMDVFYFSTAVNPAK-- 252
Query: 191 VVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRT 250
+ G ++ +D+ K ++ + P ++ + DGS + + D T
Sbjct: 253 -TRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310
Query: 251 GLVISQ 256
Q
Sbjct: 311 LEKKGQ 316
Score = 29.4 bits (64), Expect = 0.91
Identities = 10/117 (8%), Positives = 25/117 (21%), Gaps = 1/117 (0%)
Query: 234 LVTTCKDKTVRVLDPRTGLVISQ-GVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGL 292
++ + + V+D V + G + T S ++ L
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 293 WDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTNERPYIHF 349
L + + D + L + + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 49.0 bits (115), Expect = 7e-07
Identities = 24/247 (9%), Positives = 61/247 (24%), Gaps = 12/247 (4%)
Query: 9 VLDIKWNPFNDNIIASCSDDCTFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVA 68
+ +P + A+ + Y V R + F P+ V
Sbjct: 91 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVY 148
Query: 69 VVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANP 128
++ G ++ P V++ K+ + + Y +
Sbjct: 149 LMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 208
Query: 129 KFVAVVTEVAGGGAFLVLPI-HRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPT 187
+ + + + G P
Sbjct: 209 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------LTELYFTGLRSPK 262
Query: 188 AENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLD 247
N + + +D+ + + + + C++F++ G +L + V +
Sbjct: 263 DPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 319
Query: 248 PRTGLVI 254
P T +
Sbjct: 320 PDTLEKV 326
Score = 34.7 bits (78), Expect = 0.023
Identities = 11/118 (9%), Positives = 30/118 (25%), Gaps = 7/118 (5%)
Query: 225 LSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSR 284
+ ++ T + V+D + V V A+ D
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN--- 58
Query: 285 HSDRQVGLWD----ENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYY 338
+ + D +N + L+ + + D + ++ + +
Sbjct: 59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116
Score = 28.2 bits (61), Expect = 2.4
Identities = 20/183 (10%), Positives = 35/183 (19%), Gaps = 27/183 (14%)
Query: 174 GHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDC------HPDVINCLSF 227
K G P I D+ + + + +
Sbjct: 37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI 96
Query: 228 NRDGSRLVTTCKDKT------------VRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTG 275
+ DG + T + V GL P R + D G
Sbjct: 97 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156
Query: 276 RIVTTGFSRHSDRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNI 335
+ G + D+ T + + Y D +
Sbjct: 157 SLYVAG---------PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 207
Query: 336 RYY 338
Sbjct: 208 SML 210
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 47.5 bits (111), Expect = 2e-06
Identities = 51/294 (17%), Positives = 85/294 (28%), Gaps = 39/294 (13%)
Query: 17 FNDNIIASCSDDCTFR----------HVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKF 66
++D I S D T + + H+ C S
Sbjct: 23 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL-QYDERVIITGSSDSTVRVWD 81
Query: 67 VAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAA 126
V + +H + D R H A
Sbjct: 82 VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 141
Query: 127 NPKFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHP 186
N V+ G +K+W E++ L+GHKR + +++
Sbjct: 142 NVVDFDDKYIVSASGD------RTIKVWNTSTC-------EFVRTLNGHKRGIACLQYRD 188
Query: 187 TAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVL 246
+V S D I LWD+ G L V++ H +++ C D R+V+ D ++V
Sbjct: 189 ---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVW 243
Query: 247 DPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRH------SDRQVGLWD 294
D L P + +GR+ F D + +WD
Sbjct: 244 DLVAALDPRA----PAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
Score = 40.2 bits (92), Expect = 3e-04
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 212 LTVIDCHPDV---INCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPG 262
L I C + + CL + D ++V+ +D T+++ D T H G
Sbjct: 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG 56
Score = 37.9 bits (86), Expect = 0.002
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 169 IMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFN 228
I + V +++ + S D I +WD E ++ H + CL ++
Sbjct: 8 IHCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 47.5 bits (111), Expect = 2e-06
Identities = 7/81 (8%), Positives = 20/81 (24%), Gaps = 6/81 (7%)
Query: 173 HGHKRRVGYIEWHPTAEN--VVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRD 230
+ + E A +++ +DV + + + L + D
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSAD 325
Query: 231 GSRLVTTCKDKTVRVLDPRTG 251
++ D +
Sbjct: 326 RKTVMVRKDDGKIYTFPLEKP 346
Score = 38.7 bits (88), Expect = 0.001
Identities = 11/152 (7%), Positives = 30/152 (19%), Gaps = 15/152 (9%)
Query: 149 HRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHP------TAENVVASAGFDYLII 202
S + + + P E + I
Sbjct: 200 SLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPI 259
Query: 203 LWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPG 262
D G + ++ + + + + + D +T V
Sbjct: 260 NVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKN 315
Query: 263 TRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWD 294
+ D ++ D ++ +
Sbjct: 316 NLTDLR-LSADRKTVMVRK----DDGKIYTFP 342
Score = 27.1 bits (58), Expect = 5.1
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 154 WYIPDGGLSGNLNEWIMD---LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGE 210
Y G L ++ + + K + + + V D I + + K E
Sbjct: 289 AYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRK-TVMVRKDDGKIYTFPLEKPE 347
Query: 211 ALTVID 216
++
Sbjct: 348 DERTVE 353
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 47.5 bits (111), Expect = 2e-06
Identities = 34/297 (11%), Positives = 68/297 (22%), Gaps = 19/297 (6%)
Query: 5 YRGPVLDIKWNPFNDNIIASCSDDCTFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANP 64
+ V + + + + C V+ + + + N +
Sbjct: 50 HGEVVCAVTISN-PTRHVYTGGKGCV--KVWDISHPGNKSPVSQLDCLNRDNYIRSCK-- 104
Query: 65 KFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHFC 124
+ + GG L I + +
Sbjct: 105 -LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163
Query: 125 AANPKFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEW 184
+ T V G N R++ ++
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF 223
Query: 185 HPTAENVVASAGFDYLIILWDVGKGEALTVI-------DCHPDVINCLSFNRDGSRLVTT 237
++ ++L + + E L V H + L F G V+T
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST 283
Query: 238 CKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWD 294
KD + G I Q + S D IVT D++ +++
Sbjct: 284 GKDNLLNAWRTPYGASIFQ-SKESSSVLS-CDISVDDKYIVTGS----GDKKATVYE 334
Score = 32.1 bits (71), Expect = 0.15
Identities = 6/58 (10%), Positives = 15/58 (25%), Gaps = 9/58 (15%)
Query: 149 HRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDV 206
+ + W P G V + + + + D +++V
Sbjct: 287 NLLNAWRTPYGASIFQS--------KESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 45.2 bits (105), Expect = 1e-05
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 212 LTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSS--KAV 269
+ + D I+ + S L+ T D ++ V + +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 270 FIGDTGRIVTTGFSRH 285
FI +T + G +
Sbjct: 64 FIDNTDLQIYVGTVQG 79
Score = 44.8 bits (104), Expect = 1e-05
Identities = 29/267 (10%), Positives = 64/267 (23%), Gaps = 29/267 (10%)
Query: 5 YRGPVLDIKWNPFNDNIIASCS----------DDCTFRHVYGVHSKRDGCYDNVPITRNA 54
Y+ P+L + D I + + G +
Sbjct: 55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK 114
Query: 55 HDSHFCAANPKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYG---VHSKRDGCYDN 111
+ + + G A L + + + +
Sbjct: 115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQW 174
Query: 112 VPITRNAHDSHFCAANPKFVAVVTEVA----GGGAFLVLPIHRVKLWYIPDGGLSGNL-- 165
+ D+ + + G RV + + D G N
Sbjct: 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234
Query: 166 ------NEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEAL-TVIDCH 218
+ + V IE+ P + +AG D +I W++ + + +
Sbjct: 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPR-HKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293
Query: 219 PDVINCLSFNRDGSRLVTTCKDKTVRV 245
D + ++ + L D T +
Sbjct: 294 EDSVVKIAC--SDNILCLATSDDTFKT 318
Score = 41.8 bits (96), Expect = 1e-04
Identities = 6/70 (8%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDC---HPDVINCLSFN 228
K + I+ P+ ++++ +D + ++ + + + C +F
Sbjct: 7 EQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 229 RDGSRLVTTC 238
+ +
Sbjct: 66 DNTDLQIYVG 75
Score = 39.8 bits (91), Expect = 5e-04
Identities = 31/320 (9%), Positives = 78/320 (24%), Gaps = 40/320 (12%)
Query: 9 VLDIKWNPFNDNIIASCSDDCTFRHVYGVHSKRDGCYDNVPITRNAHDS-----HFCAAN 63
+ DIK P + +++ S D + V+ + + + +F
Sbjct: 14 ISDIKIIP-SKSLLLITSWDGSLT----VYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 64 PKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHF 123
+ V T ++ F+ + +++ K +
Sbjct: 69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128
Query: 124 CAAN------PKFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGL------SGNLNEWIMD 171
K + F + + + + + + ++
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVI---------------D 216
G K ++ + P + A + D + +
Sbjct: 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248
Query: 217 CHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGR 276
+N + F+ L T D + + +T I V I +
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN---FAKFNEDSVVKIACSDN 305
Query: 277 IVTTGFSRHSDRQVGLWDEN 296
I+ S + + D+
Sbjct: 306 ILCLATSDDTFKTNAAIDQT 325
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 44.1 bits (102), Expect = 2e-05
Identities = 29/291 (9%), Positives = 60/291 (20%), Gaps = 33/291 (11%)
Query: 7 GPVLDIKWNPFND-NIIASCSDDCTFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPK 65
V +K++P + S + N + A
Sbjct: 64 SVVTTVKFSPIKGSQYLCSGDESGKVIV----WGWTFDKESNSVEVNVKSEFQVLAGPIS 119
Query: 66 FVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHFCA 125
++ + R + V RD +
Sbjct: 120 DISW----------------------DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG 157
Query: 126 ANPKFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWH 185
+ + A + + + + ++Y + R V +
Sbjct: 158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS 217
Query: 186 PTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRV 245
V S + + D + T D T+RV
Sbjct: 218 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 277
Query: 246 LDPRTGLVIS--QGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWD 294
D T + V GRI++ D + ++
Sbjct: 278 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS----LDGTLNFYE 324
Score = 39.9 bits (91), Expect = 5e-04
Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 10/128 (7%)
Query: 175 HKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDC---HPDVINCLSF--NR 229
+ ++ + PT + G + D G + V+ V+ + F +
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 230 DGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQ 289
L + + V V + + K+ F G I + R
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFD-----KESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 130
Query: 290 VGLWDEND 297
+ + D
Sbjct: 131 CVVGEGRD 138
Score = 33.7 bits (75), Expect = 0.048
Identities = 5/58 (8%), Positives = 16/58 (27%), Gaps = 5/58 (8%)
Query: 149 HRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDV 206
+++W + L + + T + S D + +++
Sbjct: 273 ATIRVWDVTTSKCVQKWT-----LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 43.4 bits (100), Expect = 4e-05
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVI-DCHPDVINCLSFN 228
+GH + + + + SA + I WD+ G + V D H +I +
Sbjct: 8 RYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Score = 43.1 bits (99), Expect = 5e-05
Identities = 33/294 (11%), Positives = 73/294 (24%), Gaps = 14/294 (4%)
Query: 6 RGPVLDIKWNPFNDNIIASCSDDCTFRHVYGVHS----KRDGCYDNVPITRNAHDSHFCA 61
+ + + + + S + + + + + IT S
Sbjct: 12 NKAITALSSSA-DGKTLFSADAEGHIN-SWDISTGISNRVFPDVHATMITGIKTTSKGDL 69
Query: 62 ANPKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDS 121
+ + V GG+ + + S A S
Sbjct: 70 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY---KHIAIYS 126
Query: 122 HFCAANPKFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGY 181
H + VA + + +++E +H +
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186
Query: 182 IEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDK 241
+ + + + + H + C+S++ D RL T D
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246
Query: 242 TVRVLDPRTGLVISQGVCHPGTRSS-KAVFIGDTGRIVTTGFSRHSDRQVGLWD 294
+V V + + SS +V + IV+ G D + W+
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG----QDSNIKFWN 296
Score = 42.7 bits (98), Expect = 6e-05
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 209 GEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVI 254
G V H I LS + DG L + + + D TG+
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 47
Score = 42.3 bits (97), Expect = 7e-05
Identities = 21/249 (8%), Positives = 54/249 (21%), Gaps = 4/249 (1%)
Query: 1 LDKLYRGPVLDIKWNPFNDNIIASCSDDCTFRHVYGVHSKRDGCYDNVPITRNAHDSHFC 60
++ + IK D + + S D + V S D +
Sbjct: 50 FPDVHATMITGIKTTSKGD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 107
Query: 61 AANPKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHD 120
+A+ SS G D+
Sbjct: 108 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 167
Query: 121 SHFCAANPKFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVG 180
+ + + + ++ N +
Sbjct: 168 ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV 227
Query: 181 YIEWHPTAENVVASAGFDYLIILWDV--GKGEALTVIDCHPDVINCLSFNRDGSRLVTTC 238
+A+ D +I+W++ + + H + + +V+
Sbjct: 228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG 287
Query: 239 KDKTVRVLD 247
+D ++ +
Sbjct: 288 QDSNIKFWN 296
Score = 30.7 bits (67), Expect = 0.39
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 149 HRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDV 206
+ V +W + + + I+ V + W E + SAG D I W+V
Sbjct: 246 NSVIVWNMN----KPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSNIKFWNV 297
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 43.3 bits (100), Expect = 5e-05
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 8/154 (5%)
Query: 172 LHGHKRRV-GYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRD 230
L GH V +++ N V + D +I ++D + L + H + L +
Sbjct: 8 LRGHMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64
Query: 231 GSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQV 290
G LV+ D+TVRV D + G H T + + + TG D +
Sbjct: 65 G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG---SRDNTL 120
Query: 291 GLWDENDLNTPLALETVDSSSGVLFPYYDHDTRI 324
+W ++ V ++ +
Sbjct: 121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154
Score = 41.0 bits (94), Expect = 2e-04
Identities = 31/307 (10%), Positives = 70/307 (22%), Gaps = 26/307 (8%)
Query: 6 RGPVLDIKWNPFNDNIIASCSDDCTFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPK 65
G V +K+ I+ S S D T R ++ T D
Sbjct: 53 DGGVWALKYAH--GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 110
Query: 66 FV------------------AVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDG 107
V + H+ V +
Sbjct: 111 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170
Query: 108 CYDNVPITRNAHDSHFCAANPKFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNE 167
V + + + A K + +++ + R + +
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230
Query: 168 WIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSF 227
+L + + + + I + H ++ +F
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290
Query: 228 NRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSD 287
++ + + + + R+G ++ + + F G T +V D
Sbjct: 291 YVSD-NILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--LVAAV---EKD 344
Query: 288 RQVGLWD 294
Q L
Sbjct: 345 GQSFLEI 351
Score = 33.3 bits (74), Expect = 0.056
Identities = 12/108 (11%), Positives = 33/108 (30%), Gaps = 7/108 (6%)
Query: 149 HRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGK 208
++++ + ++++ L GH V +++ V S + G
Sbjct: 33 KMIRVYDSINK-------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC 85
Query: 209 GEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQ 256
+ + ++ +VT +D T+ V +
Sbjct: 86 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD 133
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 42.1 bits (97), Expect = 1e-04
Identities = 29/242 (11%), Positives = 71/242 (29%), Gaps = 13/242 (5%)
Query: 3 KLYRGPVLDIKWNPFND----NIIASCSDDCTFRHVYGVHSKRDGCYDNVPITRNAHDSH 58
+ + +KW ND + + + T + + +
Sbjct: 116 DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG 175
Query: 59 FCAANPKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNA 118
+ T V L+ V+ S+ + +++ + N+
Sbjct: 176 TVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYN----FESQHSMINNS 231
Query: 119 HDSHFCAANPKFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRR 178
+ +P+ + + I + + ++ + H
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291
Query: 179 VGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPD----VINCLSFNRDGSRL 234
V + ++ + + SAG+D + WDV E +T ++ H D + L+ + G L
Sbjct: 292 VMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 350
Query: 235 VT 236
Sbjct: 351 AE 352
Score = 39.8 bits (91), Expect = 5e-04
Identities = 22/164 (13%), Positives = 40/164 (24%), Gaps = 22/164 (13%)
Query: 213 TVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTG------------LVISQGVCH 260
H I +S S V+ D ++V D + V G+ H
Sbjct: 8 NAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65
Query: 261 PGTRSSKAVFIGDTGRIVTTGFS--------RHSDRQVGLWDENDLNTPLALETVDSSSG 312
+ + + TT FS D + E ++ +
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125
Query: 313 VLFPYYDHDTRILFLAGKGDGNIRYYELTNERPYIHFLNQSLSG 356
D +A G ++ + L + S
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 169
Score = 39.8 bits (91), Expect = 5e-04
Identities = 11/115 (9%), Positives = 26/115 (22%), Gaps = 16/115 (13%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDC------------HP 219
H + + + S D + +WD + D H
Sbjct: 10 GKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 220 DVINCLSFN-RDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGD 273
DV+ + + + + TT + + + +
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121
Score = 38.7 bits (88), Expect = 0.001
Identities = 17/170 (10%), Positives = 41/170 (24%), Gaps = 27/170 (15%)
Query: 151 VKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYI------EWHPTAENVVASAGFDYLIILW 204
+K+W + HK + ++ E +VA+ F ++ +
Sbjct: 36 LKVWDNKLLDNENPK-DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY 94
Query: 205 DVGKGEALTVI----------DCHPDVINCLSFNRDG-----SRLVTTCKDKTVRVLDPR 249
+ + + + D L + RLV T T +
Sbjct: 95 RITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 154
Query: 250 TG-----LVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWD 294
+ + + + + + S G +
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNN 204
Score = 30.6 bits (67), Expect = 0.40
Identities = 43/354 (12%), Positives = 86/354 (24%), Gaps = 57/354 (16%)
Query: 9 VLDIKWNPFNDNIIASCSDDCTFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVA 68
+ I+ + F ++A+ S Y + + + + + +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLL-FYRITREDE-------TKKVIFEKLDLLDSDMKKH 120
Query: 69 VVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGC----YDNVPITRNAHDSHFC 124
+ G + L HR +++ H D + P
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180
Query: 125 AANPKFVAVVT-----EVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRV 179
+F V +A G + I + S + + +
Sbjct: 181 MTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240
Query: 180 GYIEWHPTAENVVASAGFDYLIILWD-------------VGKGEALTVIDCHPDVINCLS 226
A + I L++ +A H + LS
Sbjct: 241 PQGSLLAIA----HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296
Query: 227 FNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPG--TRSSKAVFIGDTGRIVTTGFSR 284
FN G L + D +R D +T I+ H + + + G +
Sbjct: 297 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP--- 353
Query: 285 HSDRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYY 338
G++D L D D +IR++
Sbjct: 354 ------GVFDVKFLKKGWRSGMG------------ADLNESLCCVCLDRSIRWF 389
Score = 28.7 bits (62), Expect = 1.9
Identities = 31/312 (9%), Positives = 78/312 (25%), Gaps = 31/312 (9%)
Query: 6 RGPVLDIKWNPFNDNIIASCSDDCTFR----HVYGVHSKRDGCYDNVPITRNAHDSHFCA 61
+ + + SCS D + + + +D Y + H
Sbjct: 14 DADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 62 ANPKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDS 121
A + + VA L +R + D + A
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYR---ITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127
Query: 122 HFCAANPKFVAVVTEVAGGGAFL--VLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRV 179
+V G ++ P + + L + +
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187
Query: 180 GYIEWHPTAENVVASAGFDYLIIL------WDVGKGEALTVIDCHPDVINCLSFNRDGSR 233
++ ++A+ + + + + E+ + + + I + F+ GS
Sbjct: 188 TSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245
Query: 234 LVTTCKDKTV---RVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRH----- 285
L + + + G I + + + +++ F+
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305
Query: 286 ---SDRQVGLWD 294
D ++ WD
Sbjct: 306 SAGWDGKLRFWD 317
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 40.2 bits (92), Expect = 4e-04
Identities = 27/213 (12%), Positives = 60/213 (28%), Gaps = 13/213 (6%)
Query: 68 AVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNA---HDSHFC 124
+ A F+ V H++ D I A
Sbjct: 151 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV 210
Query: 125 AANPKFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEW 184
+++ G A + + + DG G + + + +
Sbjct: 211 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ- 269
Query: 185 HPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRL--VTTCKDKT 242
+ +++ D GE L + ++ + ++ ++D L + DKT
Sbjct: 270 ----RDEWRHKTASRFVVVLDAKTGERLAKFEMGHEI-DSINVSQDEKPLLYALSTGDKT 324
Query: 243 VRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTG 275
+ + D +G + V G + + D G
Sbjct: 325 LYIHDAESGEELRS-VNQLG-HGPQVITTADMG 355
Score = 33.2 bits (74), Expect = 0.062
Identities = 18/220 (8%), Positives = 40/220 (18%), Gaps = 19/220 (8%)
Query: 14 WNPFNDNIIASCSDDCTFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAA-NPKFVAVVTE 72
P + D + V A + K +V
Sbjct: 153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP 212
Query: 73 VAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVA 132
G + + + + + +
Sbjct: 213 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE 272
Query: 133 VVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAEN-V 191
+ A V + G + I + +
Sbjct: 273 WRHKTASR---------FVVVLDAKTGERLAKFE--------MGHEIDSINVSQDEKPLL 315
Query: 192 VASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
A + D + + D GE L ++ ++ G
Sbjct: 316 YALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 40.0 bits (92), Expect = 5e-04
Identities = 19/145 (13%), Positives = 36/145 (24%), Gaps = 23/145 (15%)
Query: 203 LWDVGKGEALTVIDCHPDVINCLSFNRDGSRLVTTC----------KDKTVRVLDPRTGL 252
++D + L ID + D V + V ++D T
Sbjct: 2 VYDADAKKLLGQIDGGF--GPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLD 59
Query: 253 VISQGVCHPGTRSSKAVFI----GDTGRIVTTGFSRHSDRQVGLWDENDLNTPLALETVD 308
+ V G+ + + + D + L +D
Sbjct: 60 HAGEIVIPAKHAQHVPSPYNTAFSADGKRLY---VANITPAASVTVI-DAVSKKMLSEID 115
Query: 309 SSSGVLFPYYDHDTRILFLAGKGDG 333
+++ VL F A G
Sbjct: 116 TAACVLA---YPAGDDRFTALCESG 137
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 38.4 bits (87), Expect = 0.001
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Query: 172 LHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDG 231
+ GH + + + +P + S +D I+ W H ++I L ++
Sbjct: 9 ISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ 58
Score = 37.6 bits (85), Expect = 0.002
Identities = 22/302 (7%), Positives = 57/302 (18%), Gaps = 42/302 (13%)
Query: 6 RGPVLDIKWNPFNDNIIASCSDDCTFR-------------HVYGVHSKRDGCYDNVPITR 52
+ + NP + S S D + + + + Y ++
Sbjct: 13 NKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDD 67
Query: 53 NAHDSHFCAANPKFVAVVTEVAGGGAFLVLPIHRFRGVRSSKFRHVYGVHSKRDGCYDNV 112
+ V G VL + S +
Sbjct: 68 TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS 127
Query: 113 PITRNAHDSHFCAANPKFVAVVTEVAGGGAFLVLPIHRVKLWYIPDGGLSGNLNEWIMDL 172
+ L L +
Sbjct: 128 LSQNYVAVGLEEGNTIQ-------------------VFKLSDLEVSFDLKTPLRAKPSYI 168
Query: 173 HGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGS 232
+ ++ + + + I P +
Sbjct: 169 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 228
Query: 233 RLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGL 292
+ T D + + + + I + + + +V++G +D +
Sbjct: 229 LVATGSLDTNIFIYSVKRPMKIIK-ALNAHKDGVNNLLWETPSTLVSSG----ADACIKR 283
Query: 293 WD 294
W+
Sbjct: 284 WN 285
Score = 37.2 bits (84), Expect = 0.003
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 149 HRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDV 206
+ ++ + + I L+ HK V + W + + S+G D I W+V
Sbjct: 237 TNIFIYSVKRPM------KIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWNV 286
Score = 35.3 bits (79), Expect = 0.012
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 207 GKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGL 252
G E L I H I L+ + L++ D + +
Sbjct: 1 GHDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMH 42
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 38.0 bits (87), Expect = 0.002
Identities = 15/161 (9%), Positives = 40/161 (24%), Gaps = 9/161 (5%)
Query: 97 HVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVAVVTEVAGGGAFLVLPIHRVKLWYI 156
V ++ G + A+ + ++ GA + I +
Sbjct: 198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRK 257
Query: 157 PDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVID 216
D S + + +E + + G+ I
Sbjct: 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN------TSSVTASVGQTSGPIS 311
Query: 217 CHPDVINCLSFNRDGSRL--VTTCKDKTVRVLDPRTGLVIS 255
+ + + +DG+ + + + + D + S
Sbjct: 312 -NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 36.4 bits (82), Expect = 0.005
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 2/88 (2%)
Query: 168 WIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSF 227
+ T V + + + D G + I PD ++
Sbjct: 193 IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP-AGIAV 251
Query: 228 NRDGSRLVTTC-KDKTVRVLDPRTGLVI 254
DG ++ TV V+D T +
Sbjct: 252 TPDGKKVYVALSFCNTVSVIDTATNTIT 279
Score = 34.8 bits (78), Expect = 0.016
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 192 VASAGFDYLIILWDVGKGEALTVIDCHPDVINCLSFNRDGSRL-VTTCKDKTVRVLDPRT 250
+A++ I + DV + I + + DG+++ V V ++D T
Sbjct: 6 IANSE-SDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 251 GLVISQGVCHPG 262
VI+
Sbjct: 64 NNVIATVPAGSS 75
Score = 26.4 bits (56), Expect = 9.5
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 5/60 (8%)
Query: 235 VTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGFSRHSDRQVGLWD 294
+ + + V+D + V + AV D ++ V + D
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNPMG--AVISPDGTKVYVANA---HSNDVSIID 60
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 34.5 bits (78), Expect = 0.029
Identities = 28/291 (9%), Positives = 66/291 (22%), Gaps = 45/291 (15%)
Query: 6 RGPVLDIKWNPFNDNIIASCSDDCTFRHVYG----VHSKRDGCYDNVPITRNAHDSHFC- 60
R + IA F + G V +
Sbjct: 108 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 167
Query: 61 -AANPKFVAVVTEVAGGGAFLVLP---IHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITR 116
A+ + + V G L++ I + Y
Sbjct: 168 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANN 227
Query: 117 NAHDSHFCAANPKFVAVVTEVAGGGAFLVLPIH----------------RVKLWYIPDGG 160
+ + + + + A+V + L
Sbjct: 228 SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN 287
Query: 161 LSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGF------DYLIILWDVGKGEA--- 211
+ + +L G +I+ HP + ++ F + ++D+ +A
Sbjct: 288 HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 347
Query: 212 ------LTVIDCHPDVINCLSFNRDGSRLVTTC-----KDKTVRVLDPRTG 251
+ + +N+ G + + + V+D +T
Sbjct: 348 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 398
Score = 29.2 bits (64), Expect = 1.3
Identities = 12/127 (9%), Positives = 32/127 (25%), Gaps = 5/127 (3%)
Query: 225 LSFNRDGSRL--VTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTGF 282
+ D L VT + ++D + ++ + + +GR +
Sbjct: 24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV---IDTGYAVHISRMSASGRYLLVIG 80
Query: 283 SRHSDRQVGLWDENDLNTPLALETVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYYELTN 342
+ LW + +++ S + ++ R +
Sbjct: 81 RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 140
Query: 343 ERPYIHF 349
P
Sbjct: 141 LEPKQIV 147
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 31.3 bits (70), Expect = 0.25
Identities = 12/131 (9%), Positives = 28/131 (21%), Gaps = 9/131 (6%)
Query: 222 INCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVISQGVCHPGTRSSKAVFIGDTGRIVTTG 281
++ + VT + ++D T + + S + G
Sbjct: 23 QQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHIS--RLSASGRYLFVIG 80
Query: 282 FSRHSDRQVGLWDENDLNTPLALE---TVDSSSGVLFPYYDHDTRILFLAGKGDGNIRYY 338
D +V + D E ++ S + +
Sbjct: 81 ----RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136
Query: 339 ELTNERPYIHF 349
+ P
Sbjct: 137 DGETLEPKKIQ 147
>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}
Length = 250
Score = 27.8 bits (60), Expect = 2.9
Identities = 17/142 (11%), Positives = 40/142 (28%), Gaps = 1/142 (0%)
Query: 82 LPIHRFRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVAVVTEVAGGG 141
L F + + G + + A+ + F A NP A G
Sbjct: 99 LYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGA 158
Query: 142 AFLVLPIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVA-SAGFDYL 200
+ + + + + + H + + + + AG + +
Sbjct: 159 LCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETI 218
Query: 201 IILWDVGKGEALTVIDCHPDVI 222
++L V + + + P I
Sbjct: 219 LVLSGVSSLDDIDSMPFRPSWI 240
>d1w9pa2 d.26.3.1 (A:299-360) Chitinase 1 {Aspergillus fumigatus
[TaxId: 5085]}
Length = 62
Score = 25.4 bits (56), Expect = 3.9
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 291 GLWDENDLNTPLALETVDSSSGVLFPY-YDHDTRIL 325
G+WD L A E V Y YD + L
Sbjct: 26 GVWDYKALPQAGATEHVLPDIMA--SYSYDATNKFL 59
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 27.2 bits (59), Expect = 5.2
Identities = 33/244 (13%), Positives = 68/244 (27%), Gaps = 20/244 (8%)
Query: 30 TFRHVYGVHSKRDGCYDNV-PITRNA--HDSHFCAANPKFVAVVTEVAGGGAFLVLPIHR 86
+F V+ S + ++ V P+ ++A + A + + T G V I R
Sbjct: 95 SFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPR 154
Query: 87 FRGVRSSKFRHVYGVHSKRDGCYDNVPITRNAHDSHFCAANPKFVAVVTEVAGGGAFLVL 146
F + G + ++ + + + + +A +
Sbjct: 155 T---VDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIY 211
Query: 147 PIHRVKLWYIPDGGLSGNLNEWIMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDV 206
+ + + + N +H K + + A +I
Sbjct: 212 VSNITEETVL-------DPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHA 264
Query: 207 GKGEALTVIDCHPDVINCLSFNRDGSRLVTTCKDKTVRVLDPRTGLVI---SQGVCHPGT 263
K E D+ S T ++++ L VI Q H
Sbjct: 265 EKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSEL----TNVILALLQKQDHIPY 320
Query: 264 RSSK 267
R+SK
Sbjct: 321 RNSK 324
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 26.2 bits (56), Expect = 9.5
Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 9/121 (7%)
Query: 169 IMDLHGHKRRVGYIEWHPTAENVVASAGFDYLIILWDVGK-----GEALTVIDCHPDVIN 223
I+ + +A + I L D G G + + +
Sbjct: 172 IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPD 231
Query: 224 CLSFNRDGSRLVTTCKDKTVRVLDPRTGLV----ISQGVCHPGTRSSKAVFIGDTGRIVT 279
+ D + V V V + R + I RS+ FI T +++
Sbjct: 232 SCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII 291
Query: 280 T 280
Sbjct: 292 C 292
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.451
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,948,177
Number of extensions: 92734
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 95
Length of query: 494
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,185,626
Effective search space: 480178530
Effective search space used: 480178530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)