Query psy14136
Match_columns 534
No_of_seqs 426 out of 2287
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 20:27:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 8.2E-41 2.8E-45 343.5 24.3 400 13-479 24-435 (451)
2 3o7q_A L-fucose-proton symport 100.0 7.9E-38 2.7E-42 320.1 23.7 375 13-472 22-427 (438)
3 2gfp_A EMRD, multidrug resista 100.0 1.1E-35 3.8E-40 297.9 15.3 334 95-466 27-365 (375)
4 4gc0_A D-xylose-proton symport 100.0 4.3E-35 1.5E-39 304.5 18.0 425 13-492 8-478 (491)
5 4aps_A DI-OR tripeptide H+ sym 100.0 6.7E-34 2.3E-38 295.5 22.3 371 96-479 47-473 (491)
6 2cfq_A Lactose permease; trans 100.0 9.8E-31 3.4E-35 265.7 21.1 355 95-477 35-399 (417)
7 2xut_A Proton/peptide symporte 100.0 2.4E-28 8.3E-33 255.7 17.3 367 100-478 51-503 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.6E-13 5.6E-18 139.9 15.5 173 287-477 28-206 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.4 1.5E-12 5E-17 134.6 17.7 175 287-477 13-196 (491)
10 3o7q_A L-fucose-proton symport 99.4 2.1E-12 7.2E-17 131.2 18.5 177 288-476 27-228 (438)
11 2xut_A Proton/peptide symporte 99.4 2E-12 6.9E-17 134.7 14.6 175 287-476 12-197 (524)
12 2gfp_A EMRD, multidrug resista 99.4 3.4E-12 1.2E-16 126.9 13.1 166 291-473 4-170 (375)
13 2cfq_A Lactose permease; trans 99.2 9.7E-12 3.3E-16 125.6 6.5 145 101-247 257-403 (417)
14 4gc0_A D-xylose-proton symport 99.0 9.3E-10 3.2E-14 113.4 12.5 152 97-249 306-468 (491)
15 3mkt_A Multi antimicrobial ext 48.2 2E+02 0.0067 27.8 28.6 25 173-197 139-163 (460)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=8.2e-41 Score=343.54 Aligned_cols=400 Identities=15% Similarity=0.206 Sum_probs=320.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcccEEEeeeecccccCCCCCCCCCCCcccccCCCCCCCCCCcchhhhccccccCCCCC
Q psy14136 13 PARVVLYMMSFTGFLVSFMMRTDINIAMVAMVKFQSNANNSNSNSSQPYCYVATEPGTSARGNVSELLFNDTMLLEKPNV 92 (534)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 92 (534)
+++|..+..++++++..++++..++..+|.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 54 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYL------------------------------------------------- 54 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHT-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 3456777778889999999999999888877
Q ss_pred CCCccccCChhhHHHHHHHHHHHHHHhhcccchhhcccCCeehhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhh
Q psy14136 93 NEEGEFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAA--VLHYGALIALRSIQGI 170 (534)
Q Consensus 93 ~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~~l~~~a~--~~~~~~l~~~r~l~G~ 170 (534)
.+++ .++.+.|++.+++.++..++++++|+++||+|||++++++.++.+++.+++++.. +++++.++++|+++|+
T Consensus 55 --~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 131 (451)
T 1pw4_A 55 --VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW 131 (451)
T ss_dssp --TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH
T ss_pred --HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 4478 9999999999999999999999999999999999999999999999999976611 3689999999999999
Q ss_pred hhcchhhhHHHHHhcccCCCcchhhhhh-hhhhhhHHHhhhhHHHHhhhhcC-CchhhhhhchhhHHHHHHhhhhccCCC
Q psy14136 171 ASGLTWPAMYALVGHWIPSNERSRFMSS-FQGFSFGIGLTYPLCGFLIAHYG-WRSVFYTTGSLGAIWCVAWWFLAFDAP 248 (534)
Q Consensus 171 g~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~i~~~~~li~~i~~~~~~~~~p 248 (534)
+.+...+...+++.|++|+++|++++++ ..+.++|.++++.+++++.+..| ||++|++.+++.++..++.++++||+|
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 132 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 9999999999999999999999999994 57899999999999999888898 999999999988888777777888877
Q ss_pred CCCcccchhhhhhhhh-ccCcccc-CCCCCcccHHHhhcCHHHHHHHHHHHHHHHHHHHHHhchhhhhHhhhCCccccch
Q psy14136 249 LKHPRITRKELDYIQE-NIEPTIV-GSKGLKVPWVSILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNG 326 (534)
Q Consensus 249 ~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~ 326 (534)
++....++++.+...+ ....++. +....+..+++++++|.++...+..++.......+..+.|.|+++.+|++..+.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 291 (451)
T 1pw4_A 212 QSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS 291 (451)
T ss_dssp TTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHH
T ss_pred hhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 6543222111110000 0000000 0111111257788999999999999999999999999999999998899999999
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHH--hhhcccchhHHHHHHHHHHHHHHH-HHHHHHhhcCC-chhHHHHHHHHHHHHhh
Q psy14136 327 LLTGAPFLCSYLSSVLFCYLADQL--FVRNIMSLTNIRKVFTAISQVIPA-LLVMLIGYLGC-NVALVLITWFVAVTLIT 402 (534)
Q Consensus 327 ~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 402 (534)
++.+...++.+++.++.|++.||+ ++|+.+ .++..+.. ++++.+...+. +.+......++.+++.+
T Consensus 292 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 361 (451)
T 1pw4_A 292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT----------GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY 361 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH----------HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH----------HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 876542 23333333 44555544432 44555555566666666
Q ss_pred hcccccchhhhccCCCc-hhHHHHHHhHHHHh-hhhHHhHhhhhcccccccChhhHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14136 403 ASYAGAMANVVDIGPNF-AGPILAFAQTIHMT-ASFLSPMVAGYFLQDDETSLESWRQVFLIAGAVGSCTYFFYQVLGT 479 (534)
Q Consensus 403 ~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~-g~~i~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 479 (534)
...+....+..+..|++ ||+++|+.+...++ |..++|.+.|.+.+. .+|...|++.+++.+++.++.+...+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 362 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-----FGWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677778888988876 99999999999999 999999999999998 78999999988888887777666543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=7.9e-38 Score=320.13 Aligned_cols=375 Identities=12% Similarity=0.119 Sum_probs=300.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcccEEEeeeecccccCCCCCCCCCCCcccccCCCCCCCCCCcchhhhccccccCCCCC
Q psy14136 13 PARVVLYMMSFTGFLVSFMMRTDINIAMVAMVKFQSNANNSNSNSSQPYCYVATEPGTSARGNVSELLFNDTMLLEKPNV 92 (534)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 92 (534)
++++..+..+++.++...++...++..+|.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 52 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQF------------------------------------------------- 52 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------------------------------------------------
Confidence 3455666667888888999988888888877
Q ss_pred CCCccccCChhhHHHHHHHHHHHHHHhhcccchhhcccCCeehhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q psy14136 93 NEEGEFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQ-AAVLHYGALIALRSIQGIA 171 (534)
Q Consensus 93 ~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~~l~~~-a~~~~~~~l~~~r~l~G~g 171 (534)
++++|+++.+.|++.+++.+++.+++++.|+++||+|||++++++.++.+++.+++.+ ..+++++.++++|++.|++
T Consensus 53 --~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~ 130 (438)
T 3o7q_A 53 --QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAG 130 (438)
T ss_dssp --HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhh
Confidence 5589999999999999999999999999999999999999999999999999988622 3447999999999999999
Q ss_pred hcchhhhHHHHHhcccCCCcchhhhh-hhhhhhhHHHhhhhHHHHhh-hhcC-------------------------Cch
Q psy14136 172 SGLTWPAMYALVGHWIPSNERSRFMS-SFQGFSFGIGLTYPLCGFLI-AHYG-------------------------WRS 224 (534)
Q Consensus 172 ~g~~~~~~~~~i~~~~~~~~r~~~~~-~~~~~~~G~~~g~~l~~~l~-~~~g-------------------------wr~ 224 (534)
.+...+...+++.|++|+++|+++++ ...+.++|.++++.+++.+. +..+ ||+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 210 (438)
T 3o7q_A 131 LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQT 210 (438)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHH
Confidence 99999999999999999999999999 55789999999999999998 5554 999
Q ss_pred hhhhhchhhHHHHHHhhhh-ccCCCCCCcccchhhhhhhhhccCccccCCCCCcccHHHhhcCHHHHHHHHHHHHHHHHH
Q psy14136 225 VFYTTGSLGAIWCVAWWFL-AFDAPLKHPRITRKELDYIQENIEPTIVGSKGLKVPWVSILTSPPAWAIGITTFGRIWVH 303 (534)
Q Consensus 225 ~f~i~~~~~li~~i~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (534)
.|++.+++.++..++.++. .||++++.+ ++ +++++.+.++++++++|.++...+..++.....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (438)
T 3o7q_A 211 PYMIIVAIVLLVALLIMLTKFPALQSDNH---SD-------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ 274 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCCTTTCC---CC-------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccc---cc-------------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHH
Confidence 9988877766655544432 222221110 00 011223346788999999999999999998889
Q ss_pred HHHHhchhhh-hHhhhCCccccchhHhhhHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy14136 304 YIFIIPGPRY-MKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGY 382 (534)
Q Consensus 304 ~~~~~~~~~~-l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (534)
..+..+.|.| +++.+|.+..+++.+.+...++.+++.++.+++.||+++|+.+ .++.++..+.++++.+
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~----------~~~~~~~~~~~~~~~~ 344 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL----------AAYALIAMALCLISAF 344 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH----------HHHHHHHHHHHHHHHH
Confidence 9999999999 8887899999999999999999999999999999999998753 4445555555555555
Q ss_pred cCCchhHHHHHHHHHHHHhhhcccccchhhhccCCCchhHHHHHHhHHHHhhhhHHhHhhhhcccccccChhh-HHHHHH
Q psy14136 383 LGCNVALVLITWFVAVTLITASYAGAMANVVDIGPNFAGPILAFAQTIHMTASFLSPMVAGYFLQDDETSLES-WRQVFL 461 (534)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~-~~~~f~ 461 (534)
.+ +... ....++.+++.+...+....+..+..|++++++.++.. ...+|+.++|.+.|.+.|. .+ ++..|+
T Consensus 345 ~~-~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~-----~g~~~~~~~ 416 (438)
T 3o7q_A 345 AG-GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDA-----AGNIPTAEL 416 (438)
T ss_dssp CC-HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHH-----HTSSGGGGH
T ss_pred cC-CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHH-----hcchHHHHH
Confidence 54 3333 33445566677777788888888888877888888877 6779999999999999998 66 888888
Q ss_pred HHHHHHHHHHH
Q psy14136 462 IAGAVGSCTYF 472 (534)
Q Consensus 462 ~~~~~~~~~~~ 472 (534)
+.+++.++..+
T Consensus 417 ~~~~~~~~~~~ 427 (438)
T 3o7q_A 417 IPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76655544433
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=1.1e-35 Score=297.90 Aligned_cols=334 Identities=14% Similarity=0.101 Sum_probs=275.3
Q ss_pred CccccCChhhHHHHHHHHHHHHHHhhcccchhhcccCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14136 95 EGEFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGIASGL 174 (534)
Q Consensus 95 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~~l~~~a~~~~~~~l~~~r~l~G~g~g~ 174 (534)
.+++|.++.+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.+.
T Consensus 27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~ 104 (375)
T 2gfp_A 27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASAMQGMGTGV 104 (375)
T ss_dssp HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999999999999999999999999999999996655 6999999999999999999
Q ss_pred hhhhHHHHHhcccCCCcchhhhh-hhhhhhhHHHhhhhHHHHhhhhcCCchhhhhhchhhHHHHHHhhhhccCCCCCCcc
Q psy14136 175 TWPAMYALVGHWIPSNERSRFMS-SFQGFSFGIGLTYPLCGFLIAHYGWRSVFYTTGSLGAIWCVAWWFLAFDAPLKHPR 253 (534)
Q Consensus 175 ~~~~~~~~i~~~~~~~~r~~~~~-~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~i~~~~~li~~i~~~~~~~~~p~~~~~ 253 (534)
..+...+++.|++|+++|+++++ ...+..+|..+++.+++++.+..|||+.|++.+++.++..+..++.+||+++++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
T 2gfp_A 105 GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP 184 (375)
T ss_dssp HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC
T ss_pred hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc
Confidence 99999999999999999999999 55789999999999999999989999999999888887776566666765433211
Q ss_pred cchhhhhhhhhccCccccCCCCCcccHHHhhcCHHHHHHHHHHHHHHHHHHHHHhchhhhhHhhhCCccccchhHhhhHH
Q psy14136 254 ITRKELDYIQENIEPTIVGSKGLKVPWVSILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPF 333 (534)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~ 333 (534)
. ++.+.++++++|+|+++...+..++.......+..+.|.|+++.+|.++.+.+.+.....
T Consensus 185 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 245 (375)
T 2gfp_A 185 R-------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPI 245 (375)
T ss_dssp C-------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHH
T ss_pred c-------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 0 112335677889999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH---HHHHHHHHhhc-CCchhHHHHHHHHHHHHhhhcccccc
Q psy14136 334 LCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFTAISQVI---PALLVMLIGYL-GCNVALVLITWFVAVTLITASYAGAM 409 (534)
Q Consensus 334 ~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (534)
++.+++.++.+++.||.+++. ..+..+ .+..+...... ..+.+......++.+++.+...+...
T Consensus 246 ~~~~~~~~~~~~l~~r~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 313 (375)
T 2gfp_A 246 PAAFFGAWFAGRPNKRFSTLM------------WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLAT 313 (375)
T ss_dssp HHHHHHHHHHHTTTTHHHHHH------------HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999998731 122111 11111111111 11344445556666777788888888
Q ss_pred hhhhccCCCchhHHHHHHhHHHHhhhhHHhHhhhhcccccccChhhHHHHHHHHHHH
Q psy14136 410 ANVVDIGPNFAGPILAFAQTIHMTASFLSPMVAGYFLQDDETSLESWRQVFLIAGAV 466 (534)
Q Consensus 410 ~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~f~~~~~~ 466 (534)
....|..|++||++.|+.+....+|..++|.+.|.+.+. .++...+++.+..
T Consensus 314 ~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-----~~~~~~~~~~~~~ 365 (375)
T 2gfp_A 314 SGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQT-----GQGSLGLLMTLMG 365 (375)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcC-----CcccHHHHHHHHH
Confidence 999998896699999999999999999999999999887 7887777765433
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=4.3e-35 Score=304.46 Aligned_cols=425 Identities=15% Similarity=0.119 Sum_probs=280.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcccEEEeeeecccccCCCCCCCCCCCcccccCCCCCCCCCCcchhhhccccccCCCCC
Q psy14136 13 PARVVLYMMSFTGFLVSFMMRTDINIAMVAMVKFQSNANNSNSNSSQPYCYVATEPGTSARGNVSELLFNDTMLLEKPNV 92 (534)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 92 (534)
++-|.+.++..++.++..+|...++.++|.+.++...
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~------------------------------------------- 44 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVA------------------------------------------- 44 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTG-------------------------------------------
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------------------------------
Confidence 3445555556778889999999999888777432100
Q ss_pred CCCccccCChhhHHHHHHHHHHHHHHhhcccchhhcccCCeehhHHHHHHHHHHHHHHHHH----------------HHH
Q psy14136 93 NEEGEFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQA----------------AVL 156 (534)
Q Consensus 93 ~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~~l~~~a----------------~~~ 156 (534)
+...+.+.+..+.|++.+++.+|.++|++++|+++||+|||++++++.+++.+++++++++ .++
T Consensus 45 ~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~ 124 (491)
T 4gc0_A 45 PQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG 124 (491)
T ss_dssp GGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh
Confidence 0011234566788999999999999999999999999999999999999999999998742 247
Q ss_pred HHHHHHHHHHHHhhhhcchhhhHHHHHhcccCCCcchhhhhhh-hhhhhHHHhhhhHHHHhhhh--------cCCchhhh
Q psy14136 157 HYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSF-QGFSFGIGLTYPLCGFLIAH--------YGWRSVFY 227 (534)
Q Consensus 157 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~G~~~g~~l~~~l~~~--------~gwr~~f~ 227 (534)
+++.++++|+++|++.|...+....+++|+.|+++|++..++. .+..+|.++++.++..+... .+||+.+.
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA 204 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence 9999999999999999999999999999999999999999954 67888888888877666543 34777777
Q ss_pred hhchhhHHHHHHhhhhccCCCCCCcccc-hhh-hhhhhhc---------cCc--cccCCCCCcccHHHhhcCHHHHHHHH
Q psy14136 228 TTGSLGAIWCVAWWFLAFDAPLKHPRIT-RKE-LDYIQEN---------IEP--TIVGSKGLKVPWVSILTSPPAWAIGI 294 (534)
Q Consensus 228 i~~~~~li~~i~~~~~~~~~p~~~~~~~-~~~-~~~~~~~---------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (534)
+..+..++.. ...++.||+|+...... .++ .+..++. ..+ +.....++.......++.++......
T Consensus 205 ~~~~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (491)
T 4gc0_A 205 SECIPALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVM 283 (491)
T ss_dssp TTHHHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHH
T ss_pred hhhhhhhhhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHH
Confidence 7666655544 44556788875321111 010 0000000 000 00000111112233344444443333
Q ss_pred H-HHHHHHHHHHHHhchhhhhHhhhCCccccchhHhhhHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Q psy14136 295 T-TFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFTAISQVIP 373 (534)
Q Consensus 295 ~-~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~ 373 (534)
. .+........+..+.|.+.+. .+.+...........++..+++.++++++.||+|||+.+ ..+....
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~----------~~~~~~~ 352 (491)
T 4gc0_A 284 LSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ----------IIGALGM 352 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH----------HHHHHHH
T ss_pred HHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh----------ccchHHH
Confidence 3 333444455566666666655 677777777777788899999999999999999998764 2333333
Q ss_pred HHHHHHHh---hcCCchhHHHHHHHHHHHH-hhhcccccchhhhccCCCc-hhHHHHHHhHHHHhhhhHHhHhhhhcccc
Q psy14136 374 ALLVMLIG---YLGCNVALVLITWFVAVTL-ITASYAGAMANVVDIGPNF-AGPILAFAQTIHMTASFLSPMVAGYFLQD 448 (534)
Q Consensus 374 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 448 (534)
.++++.+. .............++...+ .....+..+.+..|++|.+ |+++.|+.+..+++++++++.+.+.+.+.
T Consensus 353 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~ 432 (491)
T 4gc0_A 353 AIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN 432 (491)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222 2221223333333332222 2233456678899999987 99999999999999999999988877654
Q ss_pred cc-cChhhHHHHHHHHHHHHHHHHHH-HHhhcCCccccCCCCCCCC
Q psy14136 449 DE-TSLESWRQVFLIAGAVGSCTYFF-YQVLGTSEVQPWNQLKPAT 492 (534)
Q Consensus 449 ~~-~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 492 (534)
.. ....++...|++.+++++++.+. +++++|++.++.+|.++..
T Consensus 433 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f 478 (491)
T 4gc0_A 433 SWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALW 478 (491)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGT
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHh
Confidence 00 00023344566767666666654 4567898888777655443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=6.7e-34 Score=295.52 Aligned_cols=371 Identities=13% Similarity=0.099 Sum_probs=265.4
Q ss_pred ccccCChhhHHHHHHHHHHHHHHhhcccchhhcc-cCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14136 96 GEFDWDTTTQGAILSSFYWCYILSQVVGGVLTQR-FGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGIASGL 174 (534)
Q Consensus 96 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~i~~~l~~~a~~~~~~~l~~~r~l~G~g~g~ 174 (534)
+|+|++..+.|++.+++.++..++++++|+++|| +|||+++..+.++.+++.++++++ ++++.++++|+++|++.+.
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~ 124 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--FGASALFGSIILIIIGTGF 124 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--CSTTHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHh
Confidence 4699999999999999999999999999999999 899999999999999999986554 6899999999999999999
Q ss_pred hhhhHHHHHhcccCCCc--chhhhh-hhhhhhhHHHhhhhHHHHhhhhcCCchhhhhhchhhHHHHHHhhhhccCCCCCC
Q psy14136 175 TWPAMYALVGHWIPSNE--RSRFMS-SFQGFSFGIGLTYPLCGFLIAHYGWRSVFYTTGSLGAIWCVAWWFLAFDAPLKH 251 (534)
Q Consensus 175 ~~~~~~~~i~~~~~~~~--r~~~~~-~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~i~~~~~li~~i~~~~~~~~~p~~~ 251 (534)
..+...+++.|++|+++ |+.+++ ...+.++|..++|.+++.+.+..|||+.|++.++..++..++.++..++..++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (491)
T 4aps_A 125 LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPH 204 (491)
T ss_dssp HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 99999999999999988 666777 447889999999999999999999999999988777766665554434322111
Q ss_pred -----cccchhhhhhhhhc----------------cCccccC----------------------CCCCcccHHHhhcCHH
Q psy14136 252 -----PRITRKELDYIQEN----------------IEPTIVG----------------------SKGLKVPWVSILTSPP 288 (534)
Q Consensus 252 -----~~~~~~~~~~~~~~----------------~~~~~~~----------------------~~~~~~~~~~~~~~~~ 288 (534)
...++++.++..+. ..+.... .+..+....+..+...
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (491)
T 4aps_A 205 YLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVS 284 (491)
T ss_dssp CSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTT
T ss_pred ccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 01111111110000 0000000 0000000011111122
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhHhhhCCccccchhHhhhHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q psy14136 289 AWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFTAI 368 (534)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~ 368 (534)
.+...+..++....+.....++|.|.++..+.+....+.+.....++.+++.++.+++.||++||+.... .....
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~-----~~~~~ 359 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP-----TKFAV 359 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCch-----HHHHH
Confidence 4444555555566666677788889988788887888999999999999999999999999999865321 12234
Q ss_pred HHHHHHHHHHHHhhc--------CCchhHHHHHHHHHHHHhhhcccccchhhhccCCCc-hhHHHHHHhHHHHhhhhHHh
Q psy14136 369 SQVIPALLVMLIGYL--------GCNVALVLITWFVAVTLITASYAGAMANVVDIGPNF-AGPILAFAQTIHMTASFLSP 439 (534)
Q Consensus 369 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~ 439 (534)
+..+.++++.++... +.+.+......++.+++.+...+....+..|..|++ ||++.|+.+....+|..++|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~ 439 (491)
T 4aps_A 360 GLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA 439 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433331 124555666667777777777888888999999877 99999999999999999999
Q ss_pred HhhhhcccccccChhhHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14136 440 MVAGYFLQDDETSLESWRQVFLIAGAVGSCTYFFYQVLGT 479 (534)
Q Consensus 440 ~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 479 (534)
.+.+.+.+. ++...|.+.+++.+++.++.++..+
T Consensus 440 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 440 QLVTLYNAK------SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHGGGGGGS------STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHhcc------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988766 4556677777766666665555443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=9.8e-31 Score=265.73 Aligned_cols=355 Identities=12% Similarity=0.095 Sum_probs=242.3
Q ss_pred CccccCChhhHHHHHHHHHHHHHHhhcccchhhcccCCeehhHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHhhhh
Q psy14136 95 EGEFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIP-QAAVLHY-GALIALRSIQGIAS 172 (534)
Q Consensus 95 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~~l~~-~a~~~~~-~~l~~~r~l~G~g~ 172 (534)
++++|+|+.+.|++.+.+.++..++++++|+++||+|||++++++.++++++..... ....+.. ..++..+++.|++.
T Consensus 35 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (417)
T 2cfq_A 35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114 (417)
T ss_dssp HTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSST
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999999999999999999999999999999999999999887765322110 1111111 12345677777766
Q ss_pred cchhhhHHHHHhcccCC--Ccchhhhh-hhhhhhhHHHhhhhHHHHhhhhcCCchhhhhhchhhHHHHHHhhhhccCCCC
Q psy14136 173 GLTWPAMYALVGHWIPS--NERSRFMS-SFQGFSFGIGLTYPLCGFLIAHYGWRSVFYTTGSLGAIWCVAWWFLAFDAPL 249 (534)
Q Consensus 173 g~~~~~~~~~i~~~~~~--~~r~~~~~-~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~i~~~~~li~~i~~~~~~~~~p~ 249 (534)
+...+.....+.++.++ ++|+...+ ...+..+|..++|.+++++.+ .+||+.|++.+++.++..+..++..||+++
T Consensus 115 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T 2cfq_A 115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS 193 (417)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC
T ss_pred HHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 66555555555555543 35566677 446788999999999999887 589999998887766554444333333321
Q ss_pred CCcccchhhhhhhhhccCccccCCCCCcccHHHhhcCHHHHHHHHHHHHHHHHHHHHHhchhhhhHhhhCC---ccccch
Q psy14136 250 KHPRITRKELDYIQENIEPTIVGSKGLKVPWVSILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGF---SIQTNG 326 (534)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~---s~~~~~ 326 (534)
.. + +++.+ ++++++....++++++++|+++...+..++....+..+..+.|.|+.+.++. +....+
T Consensus 194 ~~-~--~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 262 (417)
T 2cfq_A 194 SA-T--VANAV--------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFG 262 (417)
T ss_dssp SS-C--SSSSS--------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHH
T ss_pred cc-c--ccccc--------ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHH
Confidence 11 0 00000 0000111223456788999998877766665556666667788888765442 234456
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhccc
Q psy14136 327 LLTGAPFLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALVLITWFVAVTLITASYA 406 (534)
Q Consensus 327 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (534)
++.++..++.+++.++.+++.||++||+.+ ..+..+.++.++.+.+.+ +.+...+..++.+++.+...+
T Consensus 263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 331 (417)
T 2cfq_A 263 YVTTMGELLNASIMFFAPLIINRIGGKNAL----------LLAGTIMSVRIIGSSFAT-SALEVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHH----------HHHHHHHHHHHHHHTTCC-SHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHHHHH----------HHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHH
Confidence 777777888899999999999999998753 344455555555555444 444444443334444444445
Q ss_pred ccchhhhccCCCc-hhHHHHHH-hHHHHhhhhHHhHhhhhcccccccChhhHHHHHHHHHHHHHHHHHHHHhh
Q psy14136 407 GAMANVVDIGPNF-AGPILAFA-QTIHMTASFLSPMVAGYFLQDDETSLESWRQVFLIAGAVGSCTYFFYQVL 477 (534)
Q Consensus 407 ~~~~~~~~~~p~~-~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 477 (534)
....+..|..|++ ||++.++. +....+|+.++|.+.|.+.+. .++...|.+.+++.+++.++.+..
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-----~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-----SHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-----cCcHHHHHHHHHHHHHHHHHHHhh
Confidence 5567888988877 99999994 888899999999999999988 678889998888887777665543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=2.4e-28 Score=255.74 Aligned_cols=367 Identities=11% Similarity=0.078 Sum_probs=226.7
Q ss_pred CChhhHHHHHHHHHHHHHHhhcccchhhccc-CCeehhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhcchhh
Q psy14136 100 WDTTTQGAILSSFYWCYILSQVVGGVLTQRF-GTKTVFGFSQLVTAICSLLIPQAAVL-HYGALIALRSIQGIASGLTWP 177 (534)
Q Consensus 100 ~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~i~~~l~~~a~~~-~~~~l~~~r~l~G~g~g~~~~ 177 (534)
+++.+.|++.+++.++..++.+++|+++||+ |||+++.++.++.+++.++++++ + +++.+++.|++.|++.+...+
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~ 128 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--EHSVQGFYTGLFLIALGSGGIKP 128 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHTTHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999 99999999999999999886544 6 899999999999999999999
Q ss_pred hHHHHHhcccCCCcchhhhhh---h-hhhhhHHHhhhhHHHHhhhhcCCchhhhhhchhhHHHHHHhhhhccCCCCCCcc
Q psy14136 178 AMYALVGHWIPSNERSRFMSS---F-QGFSFGIGLTYPLCGFLIAHYGWRSVFYTTGSLGAIWCVAWWFLAFDAPLKHPR 253 (534)
Q Consensus 178 ~~~~~i~~~~~~~~r~~~~~~---~-~~~~~G~~~g~~l~~~l~~~~gwr~~f~i~~~~~li~~i~~~~~~~~~p~~~~~ 253 (534)
...+++.|++|+++|+++.+. + .+.++|..+++.+++.+.+..|||+.|++.+++.++..++.++..++.++++++
T Consensus 129 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (524)
T 2xut_A 129 LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPE 208 (524)
T ss_dssp HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--
T ss_pred hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 999999999999999876554 4 578899999999999999889999999998887776655544433322211111
Q ss_pred cch--hhhhhhhhccCcccc------------------------C----------------CCCCcccHH----------
Q psy14136 254 ITR--KELDYIQENIEPTIV------------------------G----------------SKGLKVPWV---------- 281 (534)
Q Consensus 254 ~~~--~~~~~~~~~~~~~~~------------------------~----------------~~~~~~~~~---------- 281 (534)
.++ +..+...+..++.+. . +++.+.+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (524)
T 2xut_A 209 PKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHP 288 (524)
T ss_dssp ------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCC
T ss_pred CccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhcccc
Confidence 000 000000000000000 0 000000010
Q ss_pred --HhhcCHHHHHHHHHHHHHHHHHHH-HHhchhhhhHhhhCCcc---ccchhHhhhHHHHHHHHHHHHHHHH----HHHh
Q psy14136 282 --SILTSPPAWAIGITTFGRIWVHYI-FIIPGPRYMKTILGFSI---QTNGLLTGAPFLCSYLSSVLFCYLA----DQLF 351 (534)
Q Consensus 282 --~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~s~---~~~~~~~~~~~~~~~~~~~~~g~l~----dr~~ 351 (534)
+....++.+........ ....+. ...+.+.+.....+.+. ...+.+.....++.++...+.+++. +|.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (524)
T 2xut_A 289 DAAVDGVRSVLRILVLFAL-VTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG 367 (524)
T ss_dssp SSSSTTTTTHHHHHHHHTT-SHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC---------
T ss_pred HhHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC
Confidence 00111222222111111 111111 12222223222222222 1345555555555666665555543 4433
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHHhhcC--------CchhHHHHHHHHHHHHhhhcccccchhhhccCCCc-hhH
Q psy14136 352 VRNIMSLTNIRKVFTAISQVIPALLVMLIGYLG--------CNVALVLITWFVAVTLITASYAGAMANVVDIGPNF-AGP 422 (534)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~ 422 (534)
++... +....++.++.+++++.+.... .+.++.....++.+++.+...+....+..+..|++ ||+
T Consensus 368 ~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~ 441 (524)
T 2xut_A 368 VKLTA------LRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT 441 (524)
T ss_dssp ---CC------HHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTT
T ss_pred CCCCh------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhH
Confidence 32211 0113345555555555554421 24555666667777777788888888899988866 999
Q ss_pred HHHHHhHHHHhhhhHHhHhhhhcccccccChhhH---------HHHHHHHHHHHHHHHHHHHhhc
Q psy14136 423 ILAFAQTIHMTASFLSPMVAGYFLQDDETSLESW---------RQVFLIAGAVGSCTYFFYQVLG 478 (534)
Q Consensus 423 ~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~---------~~~f~~~~~~~~~~~~~~~~~~ 478 (534)
++|+.++...+|+.++|.+.|.+.+. .+ .+| ...|++.+++.+++.++.+++.
T Consensus 442 ~~g~~~~~~~~g~~~g~~~~g~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 442 IMSFWTLSVTVGNLWVLLANVSVKSP--TV-TEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYA 503 (524)
T ss_dssp THHHHGGGHHHHHHHHHHHHHHTTSC--HH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--cc-ccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875 10 122 2336666666666666555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.51 E-value=1.6e-13 Score=139.94 Aligned_cols=173 Identities=12% Similarity=0.144 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhHhhhCCccccchhHhhhHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Q psy14136 287 PPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFT 366 (534)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~ 366 (534)
+.++...+..+........+...+|.+.++ + .+..+.+++.+...++..++.++.|+++||+|||+.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l---------- 95 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL---------- 95 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH----------
Confidence 445555566666666666667778888777 6 9999999999999999999999999999999998763
Q ss_pred HHHHHHHHHHHHHHhh----cCCchhHHHHHHHHHHHHhhhcccccchhhhccCCCc-hhHHHHHHhHHHHhhhhHHhHh
Q psy14136 367 AISQVIPALLVMLIGY----LGCNVALVLITWFVAVTLITASYAGAMANVVDIGPNF-AGPILAFAQTIHMTASFLSPMV 441 (534)
Q Consensus 367 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~ 441 (534)
.++.++.+++.++..+ .+ +.+.+++..++.+++.+...+....++.|..|++ |++++|+.+....+|..++|.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 174 (451)
T 1pw4_A 96 PAGLILAAAVMLFMGFVPWATS-SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL 174 (451)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHS-SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccc-cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666 55 6777777788888888888888999999999855 9999999999999999999999
Q ss_pred hhhcccccccChhh-HHHHHHHHHHHHHHHHHHHHhh
Q psy14136 442 AGYFLQDDETSLES-WRQVFLIAGAVGSCTYFFYQVL 477 (534)
Q Consensus 442 ~g~l~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~ 477 (534)
.+.+.+. .+ |+..|++.+++.++..++.++.
T Consensus 175 ~~~l~~~-----~g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 175 FLLGMAW-----FNDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHHHH-----TCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----hccHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998877 67 9999999888777666554444
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.45 E-value=1.5e-12 Score=134.59 Aligned_cols=175 Identities=12% Similarity=0.021 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhHhh-----hCCccccchhHhhhHHHHHHHHHHHHHHHHHH-HhhhcccchhH
Q psy14136 287 PPAWAIGITTFGRIWVHYIFIIPGPRYMKTI-----LGFSIQTNGLLTGAPFLCSYLSSVLFCYLADQ-LFVRNIMSLTN 360 (534)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~ 360 (534)
+.++...+..++..+.++....+++.|+++. +|.+..+.+++.+...++..++.++.|+++|| +|||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~---- 88 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV---- 88 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH----
Confidence 4567777788888888899999999999988 89999999999999999999999999999999 8998763
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcccccchhhhccCC-Cc--hhHHHHHHhHHHHhhhhH
Q psy14136 361 IRKVFTAISQVIPALLVMLIGYLGCNVALVLITWFVAVTLITASYAGAMANVVDIGP-NF--AGPILAFAQTIHMTASFL 437 (534)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~--~g~~~g~~~~~~~~g~~i 437 (534)
.++.++.+++.++..+.+ +.+..++..++.+++.+...+....++.|..| ++ |+.+.++.+....+|..+
T Consensus 89 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 161 (491)
T 4aps_A 89 ------FWGGVLIMLGHIVLALPF-GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI 161 (491)
T ss_dssp ------HHHHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH
Confidence 566666666666666665 67777777788888888888888999999886 44 777888899999999999
Q ss_pred HhHhhhhcccccccChhhHHHHHHHHHHHHHHHHHHHHhh
Q psy14136 438 SPMVAGYFLQDDETSLESWRQVFLIAGAVGSCTYFFYQVL 477 (534)
Q Consensus 438 ~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 477 (534)
+|.+.+.+.+. .+|+..|++.++..+++.++.+..
T Consensus 162 ~~~~~~~l~~~-----~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 162 APLIVGAAQEA-----AGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988 789999999888777766665544
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.45 E-value=2.1e-12 Score=131.20 Aligned_cols=177 Identities=15% Similarity=0.139 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhHhhhCCccccchhHhhhHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q psy14136 288 PAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFTA 367 (534)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~ 367 (534)
.++.+.+..+.............|.+.+ .+|.+..+.+++.+...++..++.++.|+++||+|||+.+ .
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l----------~ 95 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQ-AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI----------I 95 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH----------H
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH----------H
Confidence 3444455555555555666666777555 4899999999999999999999999999999999999764 4
Q ss_pred HHHHHHHHHHHHH---hhcCCchhHHHHHHHHHHHHhhhcccccchhhhccCCCc-hhHHHHHHhHHHHhhhhHHhHhhh
Q psy14136 368 ISQVIPALLVMLI---GYLGCNVALVLITWFVAVTLITASYAGAMANVVDIGPNF-AGPILAFAQTIHMTASFLSPMVAG 443 (534)
Q Consensus 368 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g 443 (534)
++.++.+++.++. ...+ +.+..++..++.+++.+...+....++.|..|++ |++++++.+....+|..++|.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 96 TGLFLYALGAALFWPAAEIM-NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccccc-cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555 4545 7777888888888888988888999999998866 999999999999999999999999
Q ss_pred hcc-cccccC--------------------hhhHHHHHHHHHHHHHHHHHHHHh
Q psy14136 444 YFL-QDDETS--------------------LESWRQVFLIAGAVGSCTYFFYQV 476 (534)
Q Consensus 444 ~l~-~~~~~~--------------------~~~~~~~f~~~~~~~~~~~~~~~~ 476 (534)
.+. +..+.. ..+|+..|++.+++.++..++.++
T Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 988 541000 001888888777766655555444
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.40 E-value=2e-12 Score=134.71 Aligned_cols=175 Identities=11% Similarity=-0.030 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhHhhhC------CccccchhHhhhHHHHHHHHHHHHHHHHHHH-hhhcccchh
Q psy14136 287 PPAWAIGITTFGRIWVHYIFIIPGPRYMKTILG------FSIQTNGLLTGAPFLCSYLSSVLFCYLADQL-FVRNIMSLT 359 (534)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~ 359 (534)
|.++.+.+..++..+.++....+++.|+++.+| ++..+.+++.+...++..++.++.|+++||+ |||+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~--- 88 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI--- 88 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---
Confidence 456677777888888888889999999998889 9999999999999999999999999999999 998763
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcccccchhhhccCCCc-hhHHHHH---HhHHHHhhh
Q psy14136 360 NIRKVFTAISQVIPALLVMLIGYLGCNVALVLITWFVAVTLITASYAGAMANVVDIGPNF-AGPILAF---AQTIHMTAS 435 (534)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~---~~~~~~~g~ 435 (534)
.++.++.+++.++..+.+.+.+..++..++.+++.+...+....++.|..|++ |+++.+. .+...++|.
T Consensus 89 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 89 -------LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp -------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555425666666777778888888888889999998866 8766555 888999999
Q ss_pred hHHhHhhhhcccccccChhhHHHHHHHHHHHHHHHHHHHHh
Q psy14136 436 FLSPMVAGYFLQDDETSLESWRQVFLIAGAVGSCTYFFYQV 476 (534)
Q Consensus 436 ~i~~~~~g~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 476 (534)
.++|.+.+.+.+. .+|+..|++.+++.+++.+..+.
T Consensus 162 ~~g~~~~~~l~~~-----~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 162 FFASLSMPLLLKN-----FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHTSTHHHHT-----SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887 78999999988877766655544
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.36 E-value=3.4e-12 Score=126.90 Aligned_cols=166 Identities=12% Similarity=0.089 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhHhhhCCccccchhHhhhHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q psy14136 291 AIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFTAISQ 370 (534)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 370 (534)
.+.+..++.......+...+|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+ ..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----------~~~~ 72 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI----------LVGM 72 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC----------HHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH----------HHHH
Confidence 44555566666666667777777665 899999999999999999999999999999999999986 4555
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhcccccchhhhccCCC-chhHHHHHHhHHHHhhhhHHhHhhhhccccc
Q psy14136 371 VIPALLVMLIGYLGCNVALVLITWFVAVTLITASYAGAMANVVDIGPN-FAGPILAFAQTIHMTASFLSPMVAGYFLQDD 449 (534)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 449 (534)
.+..+........+ +.+......++.+.+.+...+....++.|..|+ +|++++++.+....+|..++|.+.+.+.+.
T Consensus 73 ~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~- 150 (375)
T 2gfp_A 73 SIFMLATLVAVTTS-SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM- 150 (375)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-
Confidence 55555555555554 666677777777888888888888899998875 499999999999999999999999999988
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHH
Q psy14136 450 ETSLESWRQVFLIAGAVGSCTYFF 473 (534)
Q Consensus 450 ~~~~~~~~~~f~~~~~~~~~~~~~ 473 (534)
.+|+..|++.+++.++..+.
T Consensus 151 ----~~~~~~~~~~~~~~~~~~~~ 170 (375)
T 2gfp_A 151 ----WNWRACYLFLLVLCAGVTFS 170 (375)
T ss_dssp ----HHHHHHHHHHHHHHHHHHCC
T ss_pred ----ccHHHHHHHHHHHHHHHHHH
Confidence 89999999888777666553
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.21 E-value=9.7e-12 Score=125.61 Aligned_cols=145 Identities=8% Similarity=0.056 Sum_probs=120.3
Q ss_pred ChhhHHHHHHHHHHHHHHhhcccchhhcccCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHH
Q psy14136 101 DTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGIASGLTWPAMY 180 (534)
Q Consensus 101 s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~~l~~~a~~~~~~~l~~~r~l~G~g~g~~~~~~~ 180 (534)
+..+.+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++ .++.+.+++..++.+++.+...+...
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--ATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--CCSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888999999999999999999999999999888888877655433 34677777888888888777778888
Q ss_pred HHHhcccCCCcchhhhhh-h-hhhhhHHHhhhhHHHHhhhhcCCchhhhhhchhhHHHHHHhhhhccCC
Q psy14136 181 ALVGHWIPSNERSRFMSS-F-QGFSFGIGLTYPLCGFLIAHYGWRSVFYTTGSLGAIWCVAWWFLAFDA 247 (534)
Q Consensus 181 ~~i~~~~~~~~r~~~~~~-~-~~~~~G~~~g~~l~~~l~~~~gwr~~f~i~~~~~li~~i~~~~~~~~~ 247 (534)
.++.|.+|++.|+++.++ + ....+|..++|.+++++.+..|++..|.+.+++.++..++.++..||+
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 999999999999999885 4 567799999999999999888899999988888887777666655554
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.04 E-value=9.3e-10 Score=113.41 Aligned_cols=152 Identities=14% Similarity=0.068 Sum_probs=112.1
Q ss_pred cccCChhhHHHHHHHHHHHHHHhhcccchhhcccCCeehhHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHhhhh
Q psy14136 97 EFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVL---HYGAL-IALRSIQGIAS 172 (534)
Q Consensus 97 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~~l~~~a~~~---~~~~l-~~~r~l~G~g~ 172 (534)
..+.+............+...++.++.+++.||+|||+.++.+....+++.+..+..... +...+ ...-+..+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
T 4gc0_A 306 TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM 385 (491)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh
Confidence 445566677777778888889999999999999999999999998888877765444222 11222 22222233332
Q ss_pred cchhhhHHHHHhcccCCCcchhhhhhh-hhhhhHHHhhhhHHHHhhh------hcCCchhhhhhchhhHHHHHHhhhhcc
Q psy14136 173 GLTWPAMYALVGHWIPSNERSRFMSSF-QGFSFGIGLTYPLCGFLIA------HYGWRSVFYTTGSLGAIWCVAWWFLAF 245 (534)
Q Consensus 173 g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~G~~~g~~l~~~l~~------~~gwr~~f~i~~~~~li~~i~~~~~~~ 245 (534)
...+....+.+|.+|.+.|++++++. ....+|..+++.+...+.+ ..++...|++.++++++..+..++++|
T Consensus 386 -~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 386 -SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp -TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 34577889999999999999999954 6677888877776655433 356788899999999999888888999
Q ss_pred CCCC
Q psy14136 246 DAPL 249 (534)
Q Consensus 246 ~~p~ 249 (534)
|+..
T Consensus 465 ETkg 468 (491)
T 4gc0_A 465 ETKG 468 (491)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 8754
No 15
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=48.25 E-value=2e+02 Score=27.77 Aligned_cols=25 Identities=0% Similarity=-0.019 Sum_probs=13.0
Q ss_pred cchhhhHHHHHhcccCCCcchhhhh
Q psy14136 173 GLTWPAMYALVGHWIPSNERSRFMS 197 (534)
Q Consensus 173 g~~~~~~~~~i~~~~~~~~r~~~~~ 197 (534)
+................+++.+...
T Consensus 139 ~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 139 AVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp HHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 3333444455555665566655554
Done!