RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14136
(534 letters)
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 245 bits (626), Expect = 4e-75
Identities = 132/480 (27%), Positives = 207/480 (43%), Gaps = 24/480 (5%)
Query: 10 DAVPARVVLYMMSFTGFLVSFMMRTDINIAMVAMVKFQSNANNSNSNSSQPYCYVATEPG 69
+ V A L +SF++ I + + S + N
Sbjct: 2 ENVFASTKLPYFCSFRLFLSFLLHICNVIIIAQRICL-SLTMVAMVNKENSTDLACL--- 57
Query: 70 TSARGNVSELLFNDTMLLEKPNVNEEGEFDWDTTTQGAILSSFYWCYILSQVVGGVLTQR 129
+ N + + N F W QG ILSS ++ I+ Q+ G L +
Sbjct: 58 --SAENELDNIKN-------------PNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK 102
Query: 130 FGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGIASGLTWPAMYALVGHWIPS 189
+ K G ++++ S++IP AA ++ R IQG+A G PA + ++ W P
Sbjct: 103 YVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP 162
Query: 190 NERSRFMS-SFQGFSFGIGLTYPLCGFLIAHY-GWRSVFYTTGSLGAIWCVAWWFLAFDA 247
ERSR + S GF G + P+ G+L + GW +FY G +G W + W+ D
Sbjct: 163 KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222
Query: 248 PLKHPRITRKELDYIQENIEPTIVGSKGLKVPWVSILTSPPAWAIGITTFGRIWVHYIFI 307
P HP I++ E YI +++ GS +P +I S P WAI FG W++ I
Sbjct: 223 PSIHPCISKFEKKYINSSLQGQ-KGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILP 281
Query: 308 IPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFTA 367
P ++ +L S + NGLL+ P+L ++L S+ YLAD L +SLT RK+F
Sbjct: 282 TYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNG 341
Query: 368 ISQVIPALLVMLIGYLGCNVALVLITWFVAVTLITASYAGAMANVVDIGPNFAGPILAFA 427
I + P + + YL L +I +A + + AG + N +D+ P F G I
Sbjct: 342 IGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGIT 401
Query: 428 QTIHMTASFLSPMVAGYFLQDDETSLESWRQVFLIAGAVGSCTYFFYQVLGTSEVQPWNQ 487
++ +AG L D + W VFLI V FY + G++E Q W +
Sbjct: 402 GLPGFIGGLIASTLAGNILSQDSKN--VWLIVFLIMAFVNILCVIFYLIFGSAERQDWAK 459
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 126 bits (319), Expect = 6e-32
Identities = 83/359 (23%), Positives = 135/359 (37%), Gaps = 23/359 (6%)
Query: 97 EFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVL 156
+ G + S+F W Y++ Q GG L RFG + ++ + + L QA
Sbjct: 23 DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGL--QAFAG 80
Query: 157 HYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSF-QGFSFGIGLTYPLCGF 215
Y +L LR + G A +P + +V W P++ER+ +S F G + PL G+
Sbjct: 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGW 140
Query: 216 LIAHYGWRSVFYTTGSLGAIWCVAWWFLAFDAPLKHPRITRKELDYI---QENIEPTIVG 272
++ H+ W+ F G LG IW V W D P + + +E YI E G
Sbjct: 141 ILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP-QKAKWLTEEEKYIVVGGLLAEQQGKG 199
Query: 273 SKGLKVPWV-SILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGA 331
K + +L W + + F F+ P Y+ G SI G +
Sbjct: 200 PSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASL 259
Query: 332 PFLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALVL 391
P + ++ +L L+D L R + + A I A LV+ + N V
Sbjct: 260 PGIVGFIGMILGGRLSDLLLRRG-------KSLVFARKTAIIAGLVLSLLMFATN--YVN 310
Query: 392 ITW----FVAVTLITASYAGAMANVVD--IGPNFAGPILAFAQTIHMTASFLSPMVAGY 444
I + VA+ ++ N AG ++ + P+V G
Sbjct: 311 IPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGA 369
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 114 bits (288), Expect = 3e-28
Identities = 77/346 (22%), Positives = 128/346 (36%), Gaps = 28/346 (8%)
Query: 97 EFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVL 156
+ T G +L++F Y L+Q + G L+ RFG + V L+ A+ LL+
Sbjct: 26 DLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLL--LFAS 83
Query: 157 HYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQ-GFSFGIGLTYPLCGF 215
L+ LR +QG+ G +PA AL+ W P ER R + GF G L L G
Sbjct: 84 SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL 143
Query: 216 LIAHYGWRSVFYTTGSLGAIWCVAWWFLAFDAPLKHPRITRKELDYIQENIEPTIVGSKG 275
L + +GWR+ F L + V L P + R E +
Sbjct: 144 LASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAE-------------EAPA 190
Query: 276 LKVPWVSILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLC 335
VP +L P + + + + + P Y + LG S GLL G L
Sbjct: 191 PLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEV-LGLSALLAGLLLGLAGLL 249
Query: 336 SYLSSVLFCYLADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNV--ALVLIT 393
+ +L L+D+L R + + + ++ AL + L+ ++ + L+
Sbjct: 250 GAIGRLLLGRLSDRLGRRRRL-------LLALLLLILAALGLALLSLTESSLWLLVALLL 302
Query: 394 WFVAVTLITASYAGAMANVVDIGPNFAGPILAFAQTIHMTASFLSP 439
L+ + ++++ G T L P
Sbjct: 303 LGFGAGLVFPALNALVSDLA--PKEERGTASGLYNTAGSLGGALGP 346
Score = 42.0 bits (99), Expect = 5e-04
Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 17/177 (9%)
Query: 292 IGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYLADQLF 351
+ + F + P Y+ LG S GLL A L L+ L L+D+
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 352 VRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALVLITWFVAVTLITASYAGAMAN 411
R ++ + ++ L +L+ ++ L+L+ + A + A A
Sbjct: 61 RRRVLLIG-----------LLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAAL 109
Query: 412 VVDI-GPNFAGPILAFAQTIHMTASFLSPMVAGYFLQDDETSLESWRQVFLIAGAVG 467
+ D P G L + L P++ G SL WR FLI +
Sbjct: 110 IADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLA-----SLFGWRAAFLILAILA 161
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 113 bits (284), Expect = 1e-27
Identities = 84/371 (22%), Positives = 129/371 (34%), Gaps = 59/371 (15%)
Query: 97 EFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVL 156
+ + G I+S+F Y L ++ G L+ RFG + V L+ A+ SLL+ A
Sbjct: 28 DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL--AFAS 85
Query: 157 HYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQ-GFSFGIGLTYPLCGF 215
L+ R + G+ G +PA AL+ W P ER R + F GF G L L G
Sbjct: 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL 145
Query: 216 LIAHYGWRSVFYTTGSLGAIWCVAWWFLAFDAPLKHPRITRKELDYIQENIEPTIVGSKG 275
L GWR +F LG + + FL
Sbjct: 146 LAESLGWRWLFLILAILGLLLALLLLFLL------------------------------- 174
Query: 276 LKVPWVSILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLC 335
+ + F + +Y + P Y++ +LG S GLL L
Sbjct: 175 -----------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLG 223
Query: 336 SYLSSVLFCYLADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALVLITWF 395
L ++L L+D R++ I ++ AL ++L+ L++
Sbjct: 224 GILGALLGGLLSD---------RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL 274
Query: 396 VAVTLITASYAGAMANVVDIGPNFAGPILAFAQTIHMTASFLSPMVAGYFLQDDETSLES 455
+ L A A P G T L P++AG L
Sbjct: 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL-----DTGG 329
Query: 456 WRQVFLIAGAV 466
+ VFLI A+
Sbjct: 330 YGGVFLILAAL 340
Score = 50.4 bits (121), Expect = 1e-06
Identities = 37/149 (24%), Positives = 56/149 (37%), Gaps = 4/149 (2%)
Query: 98 FDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKT-VFGFSQLVTAICSLLIPQAAVL 156
G +LS F IL ++GG+L+ R G + + L+ A+ LL+ A
Sbjct: 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL--ALAP 263
Query: 157 HYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQGF-SFGIGLTYPLCGF 215
L+ + G G +PA+ L P R F F S G L L G
Sbjct: 264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL 323
Query: 216 LIAHYGWRSVFYTTGSLGAIWCVAWWFLA 244
L+ G+ VF +L + + L
Sbjct: 324 LLDTGGYGGVFLILAALALLAALLLLLLP 352
Score = 35.4 bits (82), Expect = 0.061
Identities = 36/183 (19%), Positives = 57/183 (31%), Gaps = 26/183 (14%)
Query: 290 WAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYLADQ 349
+ + F + P + LG S GL+ A L L S+L YL+D+
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 350 LFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALVLITWFVAVTLITASYAGAM 409
R ++ L LL+ +G L A L V L+
Sbjct: 61 FGRRRVLLL---------------GLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALY 105
Query: 410 ANVVDIGPNFAGP-----ILAFAQTIHMTASFLSPMVAGYFLQDDETSLESWRQVFLIAG 464
+ + P L + L P++ G + WR +FLI
Sbjct: 106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE-----SLGWRWLFLILA 160
Query: 465 AVG 467
+G
Sbjct: 161 ILG 163
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 111 bits (280), Expect = 8e-27
Identities = 76/351 (21%), Positives = 126/351 (35%), Gaps = 27/351 (7%)
Query: 97 EFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVL 156
E T G +LSSF Y +S+ V G ++ R + ++ AI +L
Sbjct: 24 EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF--FGFST 81
Query: 157 HYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQ-GFSFGIGLTYPLCGF 215
+ AL ++ GI G+ WP V W +ER ++S + + G GL PL F
Sbjct: 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF 141
Query: 216 LIA-HYGWRSVFYTTGSLGAIWCVAWWFLAFDAPLKHPRITRKELDYIQENIEPTIVGSK 274
IA Y W VF G + I + + L D+P + E +E +
Sbjct: 142 GIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQS-CGLPPAEEMPNEEPDGDAEKKEE 200
Query: 275 GLKVPWVS----ILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTG 330
L +L + W I + V + P Y+ GFS +
Sbjct: 201 ELT-KKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFT 259
Query: 331 APFLCSYLSSVLFCYLADQLFVRNIMSLTNIRK-----------VFTAISQVIPALLVML 379
L + ++L +L+D+LF L + A + ++ + +
Sbjct: 260 LYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFA 319
Query: 380 IGYLGCNVALVLITWFVAVTLITASYAGAMANVVD----IGPNFAGPILAF 426
+G+L ++ +A L AG A V +G AG L +
Sbjct: 320 LGFLV--YGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGY 368
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 90.4 bits (225), Expect = 2e-19
Identities = 65/272 (23%), Positives = 107/272 (39%), Gaps = 14/272 (5%)
Query: 97 EFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVL 156
+ T G + S+F Y +S+ V GVL+ R + F +++AI ++L + L
Sbjct: 58 DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSL 117
Query: 157 HYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQG-FSFGIGLTYPLC-- 213
L + G G+ WP + HW ER + S + + G L +
Sbjct: 118 --FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL 175
Query: 214 GFLIAHYGWRSVFYTTGSLGAIWCVAWWFLAFDAP--LKHPRITRKELDYIQENIEPTIV 271
F H GWR+ FY G + I + FL D P P I D + I
Sbjct: 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPL--EIYEEEK 233
Query: 272 GSKGL---KVPWVSILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLL 328
++GL ++ +L + W + + V Y GP Y+ + GFS+
Sbjct: 234 ENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWA 293
Query: 329 TGAPFLCSYLSSVLFCYLADQLFV--RNIMSL 358
+ ++L +L+D+LF R M+L
Sbjct: 294 ISLFEVAGLPGTLLAGWLSDKLFKGRRGPMAL 325
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 60.1 bits (146), Expect = 9e-10
Identities = 81/368 (22%), Positives = 141/368 (38%), Gaps = 33/368 (8%)
Query: 97 EFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVL 156
E+ D G + S+ + G L R G + V +S L+ ++ +LL A
Sbjct: 46 EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLC--ALAT 103
Query: 157 HYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSS-FQGFSFGIGLTYPLCGF 215
+ L+ LR + G+ G P + ALV + P R + F G+ G + L G+
Sbjct: 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW 163
Query: 216 LIAHYGWRSVFYTTGSLGAI--WCVAWW------FLAFDAPLKHPRITRKELDYIQENIE 267
LI +GWRS+FY G + + + FL P RI +Q +
Sbjct: 164 LIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQ 223
Query: 268 PTIVGSKGLKVPWVSILTSPPAWAIGITTFGRIWVHYIFIIPG--------PRYMKTILG 319
+ K + S+ + T +W+ Y ++ G P+ M LG
Sbjct: 224 SALPEQKATQGTKRSVFKALFQGKTARITVL-LWLLYFMLLVGVYFLTNWLPKLMVE-LG 281
Query: 320 FSIQTNGLLTGAPFLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFTAISQVIPALLVML 379
FS+ + S++F +LAD+L R L ++ A+ +L
Sbjct: 282 FSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL-----------LLGAVFAVL 330
Query: 380 IGYLGCNVALVLITWFVAVTLITASYAGAMANVVDIGPNFA-GPILAFAQTIHMTASFLS 438
+G + L+L+ +A + +G A + P + +A I + +
Sbjct: 331 VGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIG 390
Query: 439 PMVAGYFL 446
P++AGY L
Sbjct: 391 PILAGYLL 398
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 59.5 bits (145), Expect = 2e-09
Identities = 62/327 (18%), Positives = 119/327 (36%), Gaps = 37/327 (11%)
Query: 98 FDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLH 157
G +++++ L + +LT R + + + + +LL A
Sbjct: 43 LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP--S 100
Query: 158 YGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSS-FQGFSFGIGLTYPLCGFL 216
+ L+ R++ G+A G+ W AL +P +R R ++ F G + L PL FL
Sbjct: 101 FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL 160
Query: 217 IAHYGWRSVFYTTGSLGAI-WCVAWWFLAFDAPLKHPRITRKELDYIQENIEPTIVGSKG 275
+GWR+ F L + + W L + L
Sbjct: 161 GQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTL---------------- 204
Query: 276 LKVPWVSILTSPPAWAIGITTF---GRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAP 332
+ +L P + TF + Y +I P +++++ GFS+ L+ A
Sbjct: 205 -----LRLLRRPGVLLGLLATFLFMTGHFALYTYIRP---FLESVAGFSVSAVSLVLLAF 256
Query: 333 FLCSYLSSVLFCYLADQLFVRNIMSLTNIRKV------FTAISQVIPALLVMLIGYLGCN 386
+ ++ ++L LAD+ R +++ + + FT S + L+ L G+
Sbjct: 257 GIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSP 316
Query: 387 VALVLITWFVAVTLITASYAGAMANVV 413
L T + A AG++
Sbjct: 317 ALQGLQTRLARLAPDAADLAGSLNVAA 343
Score = 33.4 bits (77), Expect = 0.29
Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 9/128 (7%)
Query: 121 VVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGIASGLTWPAMY 180
++GG L R G + + L+ A+ L + AL L + PA+
Sbjct: 265 LLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALL----FLWGFAFSPALQ 319
Query: 181 ALVGHWIPSNERSR--FMSSFQG-FSFGIGLTYPLCGFLIAHYGWRSVFYTTGSLGAIWC 237
L + S F+ GI L L G ++ G+ + + +L +
Sbjct: 320 GLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLL-A 378
Query: 238 VAWWFLAF 245
+ L+
Sbjct: 379 LLLALLSA 386
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 55.0 bits (133), Expect = 6e-08
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 6/135 (4%)
Query: 110 SSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQG 169
S F+ +L V G L+ RFG K V S LVTA+ +L A +Y + R + G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVL--TAFSPNYTVFLVFRLLVG 191
Query: 170 IASGLTWPAMYALVGHWIPSNERSRF-MSSFQGFSFGIGLTYPLCGFLIAHYGWRSVFYT 228
+ G W L ++P +R+ FS G+ + PL + I WR +
Sbjct: 192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGL-VLLPLVAYFIPD--WRWLQLA 248
Query: 229 TGSLGAIWCVAWWFL 243
++ + WF+
Sbjct: 249 VSLPTFLFFLLSWFV 263
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 52.8 bits (127), Expect = 3e-07
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 4/133 (3%)
Query: 124 GVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGIASGLTWPAMYALV 183
G L +RFGT+ +F S + SLL A L +I R IQG G P ++ +
Sbjct: 58 GWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLE--LMIIFRVIQGFGGGPLIPLSFSTL 115
Query: 184 GHWIPSNERSRFMSSFQ-GFSFGIGLTYPLCGFLIAHYGWRSVFYTTGSLGAIWCV-AWW 241
+ P +R R M+ + L L G++I +Y WR +F +G I V A++
Sbjct: 116 LNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFF 175
Query: 242 FLAFDAPLKHPRI 254
L D P
Sbjct: 176 ILPRDKPAASENF 188
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 49.2 bits (118), Expect = 4e-07
Identities = 39/136 (28%), Positives = 50/136 (36%), Gaps = 13/136 (9%)
Query: 116 YILSQVVG----GVLTQRFGTKTVFGFSQLVTAICSLL-IPQAAVLHYGALIALRSIQGI 170
Y L Q++ G+LT RFG K V I L A + LI R +QG
Sbjct: 7 YALGQLIYSPLSGLLTDRFGRKPVLLVG---LFIFVLSTAMFALSSNITVLIIARFLQGF 63
Query: 171 ASGLTWPAMYALVGHWIPSNERSR---FMSSFQGFSFGIGLTYPLCGFLIAHYGWRSVFY 227
+ A AL+ P ER MS+ +G PL G L GWR+ F
Sbjct: 64 GAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGP--PLGGVLAQFLGWRAPFL 121
Query: 228 TTGSLGAIWCVAWWFL 243
L + FL
Sbjct: 122 FLAILALAAFILLAFL 137
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 45.4 bits (108), Expect = 6e-05
Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 14/152 (9%)
Query: 101 DTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGA 160
T G I+S F ++ + G L RFG K ++ I +LL A +
Sbjct: 44 STVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYM 103
Query: 161 LIALRSIQGIASGLTWPAMYALVGHWI----PSNERSRFMSSFQ-GFSFGIGLTYPLCGF 215
LI R I G+ G LV +I P R S +Q G +FGI + + G
Sbjct: 104 LIVGRVIVGLGVGGI----SVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAA-IIGL 158
Query: 216 LIAHY----GWRSVFYTTGSLGAIWCVAWWFL 243
+ Y GWR + + FL
Sbjct: 159 GLNKYSNSDGWRIPLGLQFVPAILLLIGLLFL 190
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 44.7 bits (104), Expect = 7e-05
Identities = 56/302 (18%), Positives = 105/302 (34%), Gaps = 14/302 (4%)
Query: 98 FDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLH 157
G +LS+F+ Y + ++ G L R+G + V L+ + +LL+ A +
Sbjct: 34 LSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVG 93
Query: 158 YGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQ---GFSFGIGLTYPLCG 214
L+ LR +QG+ G P AL+ W P + G+ L L G
Sbjct: 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAG 153
Query: 215 FLIAH--YGWRSVFYTTGSLGAIWCVAWW---------FLAFDAPLKHPRITRKELDYIQ 263
L+ +GWR+ F LG + + L L + + L +
Sbjct: 154 LLLGALLWGWRAAFLLAALLGLLLLILVLLLDLLLAAPRLPLAVGLALIELGKLLLLLLI 213
Query: 264 ENIEPTIVGSKGLKVPWVSILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQ 323
+ ++ GL + +G+ I ++ P + G S
Sbjct: 214 LLLGGLVLLLLGLYLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGAAGGLSAL 273
Query: 324 TNGLLTGAPFLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYL 383
+ L+ +L + L V + +R + A + ++ LL++L+ L
Sbjct: 274 VGAAGGLLALILLGLAGLLGTLVGGSLLVDRLGRSLGLRAILLAGALLLAILLLVLLLAL 333
Query: 384 GC 385
Sbjct: 334 VL 335
>gnl|CDD|183487 PRK12382, PRK12382, putative transporter; Provisional.
Length = 392
Score = 44.3 bits (105), Expect = 1e-04
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 106 GAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIAL- 164
G L++F ++L +V+ G + RFG V S LV + LL+ A A +AL
Sbjct: 252 GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP----TAWVALA 307
Query: 165 -RSIQGIASGLTWPAMYALVGHWIPSNERSRFM---SSFQGFSFGIGLTYPLCGFLIAHY 220
++ G L +PA+ V +PS R + ++FQ ++G+ + PL G L +
Sbjct: 308 GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGV--SGPLAGMLATSF 365
Query: 221 GWRSVFYTTG 230
G+ SVF
Sbjct: 366 GYPSVFLAGA 375
>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and
metabolism].
Length = 395
Score = 44.2 bits (105), Expect = 1e-04
Identities = 68/375 (18%), Positives = 117/375 (31%), Gaps = 61/375 (16%)
Query: 115 CYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLL--IPQAAVLHYGALIALRSIQGIAS 172
+ L L +RFG + + L+ A L+ + +L G L+A I + +
Sbjct: 59 AFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLLAGAGI-AVIN 117
Query: 173 GLTWPAMYALVGHWIPSNERSRFMSSFQGFSFGIG------LTYPLCGFLIAHYGWRSVF 226
L + +L+ P +R M+ S G G L PL GWR
Sbjct: 118 VL----LPSLIKRDFP--KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS---GGWRGAL 168
Query: 227 YTTGSLGAIWCVAWWFLAFDAPLKHPRITRKELDYIQENIEPTIVGSKGLKVPWVSILTS 286
L + + W P+ R V + S
Sbjct: 169 GFWALLALLALLIWL----------PQALR-----------EQAASIATKLVSVRKVWRS 207
Query: 287 PPAWAIGITTFGRI-WVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCY 345
P AW + + G ++YI I P + G S G L L+ +
Sbjct: 208 PLAWQVTL-FMGLQSLLYYIVIGWLPAILIDR-GLSAAEAGSLLSL----MQLAQLPTAL 261
Query: 346 LADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVA-LVLITWFVAV--TLIT 402
L L R N R + V+ ALL+ML+G +G +A L + +
Sbjct: 262 LIPLLARR----SKNQRPL------VVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQG 311
Query: 403 ASYAGAMANVVD--IGPNFAGPILAFAQTIHMTASFLSPMVAGYFLQDDETSLESWRQVF 460
++ A+ ++ A + AQ + + P + G+ + +
Sbjct: 312 GAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLA 371
Query: 461 LIAGAVGSCTYFFYQ 475
L + +
Sbjct: 372 LATLLMLIFGLRAGR 386
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 42.3 bits (100), Expect = 5e-04
Identities = 60/313 (19%), Positives = 97/313 (30%), Gaps = 69/313 (22%)
Query: 117 ILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLH-YGALIALRSIQGIASGLT 175
L ++ G LT RFG + S L+ I L + A L+ + + G+A
Sbjct: 63 ALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASF 122
Query: 176 WPAMYALVGHWIPSNERSRFMSSFQGFSFGI-----------GLTYPLCGFLIAHYGWRS 224
M + P + QG + GI L PL WR+
Sbjct: 123 AVGM-PNASFFFPKEK--------QGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRN 173
Query: 225 VFYTTGSLGAIWCVAWWFLAFDAPLKHPRITRKELDYIQENIEPTIVGSKGLKVPWVSIL 284
V AI V W D P E L ++
Sbjct: 174 VAGIYVVALAIAAVLAWLGMNDVP------------------EHRASVKPQLPAQLKAVF 215
Query: 285 TSPPAWAIGIT---TFGRIWVHYIFIIPG-PRYMKTILGFSIQTNGLLTGAPFLCSYLSS 340
++ W + + TFG ++ P Y+ T G S T GL+ FL + +
Sbjct: 216 SNKDTWLLSLLYFATFGG----FVGFSAYLPMYLVTQFGLSPVTAGLIA---FLFPLIGA 268
Query: 341 VLFCYLADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALVLITWFVAVTL 400
+ R + +S I V L ++G +A L++ F+
Sbjct: 269 L-------------------ARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFG 309
Query: 401 ITASYAGAMANVV 413
S+ +A +
Sbjct: 310 HGGSFVVFVAVFL 322
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 41.9 bits (99), Expect = 7e-04
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 3/110 (2%)
Query: 122 VGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGIASGLTWPAMYA 181
+GG L R G K + S + + SL QA + +L+ R + G+ G P + A
Sbjct: 69 LGGRLADRIGRKRILIVSVALFGLFSLATAQAW--DFPSLLVARLLTGVGLGGALPNLIA 126
Query: 182 LVGHWIPSNERSRFMSS-FQGFSFGIGLTYPLCGFLIAHYGWRSVFYTTG 230
L + R +S + G FG L + WR +FY G
Sbjct: 127 LTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGG 176
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 41.2 bits (97), Expect = 0.001
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 123 GGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGIASGLTWPAMYAL 182
G + R G K V + I SLL A L R +QGI +G + +A+
Sbjct: 58 AGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL-FLAG-RFLQGIGAGCCYVVAFAI 115
Query: 183 VGHWIPSNERSRFMSSFQGFSFGIGLTYPLCGFLI-AHYGWRSVFYTTGSLGAIWCV 238
+ + R++ +S G + I + P+ G LI + W+S+FYT ++G + +
Sbjct: 116 LRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLL 172
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 39.7 bits (93), Expect = 0.003
Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 12/161 (7%)
Query: 109 LSSFYWCYILSQVVGGVLTQRFGTKTVF---GFSQLVTAICSLLIPQAAVLHYGALIALR 165
L+ + + Q++ G L+ R+G + V F ++++ L L + LR
Sbjct: 46 LTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETL-----LVLR 100
Query: 166 SIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQGFSFGIGLTYPLCG-FLIAHYGWRS 224
+Q + ALV P E SR S PL G +++ W +
Sbjct: 101 FVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHA 160
Query: 225 VFYTTGSLGAIWCVAWWFLAFDAPLKHPRITRKELDYIQEN 265
+F G + +F+ P P R ++ E
Sbjct: 161 IFAFLSLAGILLSALIFFI---LPETLPYEARIQISTYFET 198
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 38.7 bits (91), Expect = 0.006
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 109 LSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQ 168
LS++ + + Q+ G + FG K V LV A+ ++ A LI +R +
Sbjct: 32 LSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVAC--ALAQTIDQLIYMRFLH 89
Query: 169 GIASGLTWPAMYALVGHWIPSNERSRFMSSFQGFSFGIG-LTYP-LCGFLIAHYGWRSVF 226
G+A+ + AL+ P E SR MS F I L P + G+L+ + W ++F
Sbjct: 90 GLAAAAASVVINALMRDMFPKEEFSRMMS-FVTLVMTIAPLLAPIIGGWLLVWFSWHAIF 148
Query: 227 YTTGSLGAIWCVAWWFL 243
+ + +F
Sbjct: 149 WVLALAAILAAALVFFF 165
>gnl|CDD|183266 PRK11663, PRK11663, regulatory protein UhpC; Provisional.
Length = 434
Score = 38.9 bits (91), Expect = 0.006
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
Query: 106 GAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALR 165
G + + FY Y +S+ V G+++ R + G + T I ++L ++ L A L
Sbjct: 61 GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSL--WAFALLW 118
Query: 166 SIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQ-GFSFGIGLTYPLCGFLIAHYGWRS 224
+ G WP L+ W ER + + + + G L + G + HYGWR
Sbjct: 119 VLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRY 178
Query: 225 VFYTTGSLG 233
G +
Sbjct: 179 GMMIAGIIA 187
>gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter. This model
describes a very hydrophobic protein, predicted to span
the membrane at least 8 times. The two members confirmed
experimentally as glycerol-3-phosphate transporters,
from E. coli and B. subtilis, share more than 50 % amino
acid identity. Proteins of the hexose phosphate and
phosphoglycerate transport systems are also quite
similar [Transport and binding proteins, Other].
Length = 438
Score = 38.7 bits (90), Expect = 0.007
Identities = 57/274 (20%), Positives = 101/274 (36%), Gaps = 23/274 (8%)
Query: 87 LEKPNVNEEGEFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAIC 146
L P + E+G + G LS+ Y S+ + G ++ R + +++A
Sbjct: 48 LAMPYLVEQG---FSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV 104
Query: 147 SLLIPQA--AVLHYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQ-GFS 203
LL+ A + L + G G+ WP + HW +ER +S + +
Sbjct: 105 MLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHN 164
Query: 204 FGIGLTYPLCGFLIAHY-GWRSVFYTTGSLGAIWCVAWWFLAFDAPLK--HPRITRKELD 260
G G+ L +A + W + Y I + + + D P P I D
Sbjct: 165 IGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRND 224
Query: 261 Y---IQENIEPTIVGSKGLKVPWVSILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTI 317
Y E E + +K + + +V L + W I I + Y + P Y+K +
Sbjct: 225 YPDDYNEKAEQELT-AKEIFMQYV--LPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEV 281
Query: 318 LGFSIQTNGL------LTGAP--FLCSYLSSVLF 343
F++ + G P LC ++S +F
Sbjct: 282 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF 315
>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter;
Provisional.
Length = 399
Score = 38.3 bits (90), Expect = 0.007
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 109 LSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLI-----PQAAVLHYGALIA 163
L+ F ++ ++++ G L R G V S LV + LL+ P A++ GA +
Sbjct: 255 LTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALI--GAALT 312
Query: 164 LRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQGF-SFGIGLTYPLCGFLIAHYGW 222
G L +PA+ +P R + ++ F +G+T PL G + + +G+
Sbjct: 313 -----GFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGY 367
Query: 223 RSVFYTTGSLGAI 235
S+F +
Sbjct: 368 PSIFLAAALAALL 380
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
and metabolism].
Length = 498
Score = 37.3 bits (87), Expect = 0.022
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 9/147 (6%)
Query: 104 TQGAILSSFY--WCYILSQVVGGVLTQRF-GTKTVFGFSQLVTAICSLLIPQAAVLHYGA 160
T L S Y Y L+ ++GG L R GT+ ++ AI L++ ++V G
Sbjct: 61 THATGLFSAYGSLVY-LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG 119
Query: 161 LIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQGFSFGI---GLTYPL-CGFL 216
L ++ + +GL P + +L+G P ++ R F F GI L P+ G L
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRR-DGGFTLFYMGINIGSLIAPIITGLL 178
Query: 217 IAHYGWRSVFYTTGSLGAIWCVAWWFL 243
+YGW F I V +
Sbjct: 179 AINYGWHVGFGLAAVGMIIGLVIFLLG 205
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 36.4 bits (84), Expect = 0.031
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 111 SFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGI 170
+F + I S GG L R G K + S L I +L+ A + + LR++ G+
Sbjct: 63 TFLFSAIASPFWGG-LADRKGRKIMLLRSALGMGIVMVLMGLAQ--NIWQFLILRALLGL 119
Query: 171 ASGLTWPAMYALVGHWIPSNERSRFMSSFQGFSFGIGLTYPLCGFLIA-HYGWRSVFYTT 229
G P AL+ +P N+ + + L PL G L+A YG R VF+ T
Sbjct: 120 LGGFV-PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178
Query: 230 GSL 232
S+
Sbjct: 179 ASV 181
Score = 35.3 bits (81), Expect = 0.080
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 124 GVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGIASGLTWPAMYALV 183
G L R G + + + + + + LLIP + V L LR + G A G PA+ L+
Sbjct: 279 GKLGDRIGPEKILITALIFSVL--LLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLL 336
Query: 184 GHWIPSNERSRFMSSFQGFSFGIGLTYPLCGFLI-AHYGWRSVFYTT 229
+ + R S Q F +T PL G I A+YG+R+VF T
Sbjct: 337 VYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVT 383
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 35.3 bits (82), Expect = 0.068
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 14/128 (10%)
Query: 110 SSFYWCYILSQVVG----GVLTQRFGTKTVFGFSQLVTAICSLLI----PQAAVLHYGAL 161
S ++ ++G L +RFG K F L+ AI +L+ P + L +
Sbjct: 260 SVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLV 319
Query: 162 IALRSIQGIASGLTWPAMYALV---GHWIPSNERSRFMSSFQGFS--FGIGLTYPLCGFL 216
+ G+A+ L W AM A V G W R S F+ G L + G L
Sbjct: 320 VLAGIGLGLATLLPW-AMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGAIVGLL 378
Query: 217 IAHYGWRS 224
+A G+ +
Sbjct: 379 LAFAGYVA 386
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 34.5 bits (80), Expect = 0.12
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 18/136 (13%)
Query: 103 TTQGAI---LSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYG 159
T+ A+ LS F + L Q++ G L+ R+G K V + A+ SL + V
Sbjct: 38 TSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGM--LWVESAA 95
Query: 160 ALIALRSIQGI---ASGLTWPAMYALVGHWIPSNERSRFMSSFQGFSFGIGLT---YPLC 213
L+ LR +Q + ++ + W A+ V P+ + +R ++ + L+ PL
Sbjct: 96 QLLVLRFVQAVGVCSAAVIWQAL---VIDRYPAQKANRVFATIMPL---VALSPALAPLL 149
Query: 214 G-FLIAHYGWRSVFYT 228
G +L+ H+GW+++F T
Sbjct: 150 GAWLLNHFGWQAIFAT 165
>gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed.
Length = 394
Score = 34.1 bits (78), Expect = 0.16
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 133 KTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGIASGLTWPAMYALVGHWIPSNER 192
V F+ L+T C LL+ A + L+ R+ G+A G W +L +P
Sbjct: 86 YVVILFAVLLTLSC-LLVSFAN--SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTV 142
Query: 193 SRFMSS-FQGFSFGIGLTYPLCGFLIAHYGWRSVFYTTGSLGAIWCVAW 240
+ +S F S + + PL FL GWR+VF +G + C+ W
Sbjct: 143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVL-CIFW 190
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 33.9 bits (78), Expect = 0.20
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 8/147 (5%)
Query: 97 EFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVL 156
EF T +++S+ + ++ G + R+G + S ++ ++ +L A
Sbjct: 49 EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP-- 106
Query: 157 HYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSF--QGFSFGIGLTYPLCG 214
Y L R + G+ + + V P + R++ S F GFS G + +
Sbjct: 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNK-ASGFLISGFSIGAVVAAQVYS 165
Query: 215 FLIAHYGWRSVFYTTGSLGAIWCVAWW 241
++ +GWR++F+ G L I A W
Sbjct: 166 LVVPVWGWRALFF-IGILPII--FALW 189
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 33.6 bits (77), Expect = 0.29
Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 10/161 (6%)
Query: 104 TQGAILSSFYWCYILSQVV-------GGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVL 156
T G ++ + L V G ++G + V F ++ + +L A L
Sbjct: 32 THGWGRAAIQVAFTLFVVTETWLVPIEGWFVDKYGPRIVVMFGGIMCGLGWVLNAYADSL 91
Query: 157 HYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQGFSFGIGLTYPLCGFL 216
AL A + GI +G + W P + GF G LT +
Sbjct: 92 --PALYAAAVVAGIGAGAVYGTCVGNALKWFPDKRGLAAGLTAAGFGAGAALTVVPIAAM 149
Query: 217 IAHYGWRSVFYTTGSL-GAIWCVAWWFLAFDAPLKHPRITR 256
I G+++ F G G + + L +P + P+ +
Sbjct: 150 IKVSGYQAAFMYFGLGQGIVIVLLALLLRAPSPGQVPKQAK 190
>gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional.
Length = 832
Score = 33.7 bits (77), Expect = 0.29
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 103 TTQGAILSSFYWCYILSQV-VGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGAL 161
T +G S FY C IL+ V + G +T GT +VFG + L+IP + +
Sbjct: 263 TPEGETFSEFYICLILTGVMISGFITDAIGTHSVFG-----AFVFGLVIPNGPL----GV 313
Query: 162 IALRSIQGIASGLTWPAMYALVG 184
+ ++ SGL P +A+ G
Sbjct: 314 TLIEKLEDFVSGLLLPLFFAISG 336
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 33.4 bits (77), Expect = 0.32
Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 19/159 (11%)
Query: 126 LTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGIASGLTWPAMYALV-- 183
L ++FG K +F L+ A+ LL+ ++ I G+ +G+ P +A+V
Sbjct: 295 LVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVAD 354
Query: 184 ----GHWIPSNERSRFMSSFQGFSFGIGLTYPLCGFLIA----HYGWRSVFY--TTGSLG 233
G W R + S F +GL L GF+ G+ + +L
Sbjct: 355 TVDYGEWKTGVRREGIVYSGMTFFRKLGLA--LAGFIPGWILGAIGYVPNVSAQSASALF 412
Query: 234 AI-WCVAWW----FLAFDAPLKHPRITRKELDYIQENIE 267
I + L + ++ K I E +E
Sbjct: 413 GIRFLFIILPALLLLLAAIIIFFYKLNEKMHKEIIEELE 451
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 32.6 bits (75), Expect = 0.50
Identities = 66/309 (21%), Positives = 106/309 (34%), Gaps = 46/309 (14%)
Query: 121 VVGGVLTQRFGTKTVFGFSQLVTAICSLLI---PQAAVLHYGA---LIALRSIQGIASGL 174
+V G R G K + L+ I +LLI P A + A L+ R IQG + G
Sbjct: 53 IVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGG 112
Query: 175 TWPAMYALVGHWIPSNERSRFMSSFQGFSFGIG-----LTYPLCGFLIAH-----YGWRS 224
W + + P +R F SFQ +G LT L +L+ +GWR
Sbjct: 113 EWGGAALYLAEYAPPGKRG-FYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRI 171
Query: 225 VFYTTGSLGAIWCVAWWFLAFDAPLKHPRITRKELDYIQENIEPTIVGSKGLKVPWVSIL 284
F + L I L L+ + K + K + P L
Sbjct: 172 PFLVSAVLVLI------GLYLRRNLEETPVFEKAQEK-----------HKKKRGPIAETL 214
Query: 285 TSPPAWAIGITTFGRIWVH---YIFIIPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSSV 341
T + I Y+ P Y+ LG S + L+ + +++
Sbjct: 215 TKHR-KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIP 273
Query: 342 LFCYLADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALVLITWFVAVTLI 401
L L+D++ R ++ + + A+ LL+ L+ + L+ LI
Sbjct: 274 LSGALSDRIGRRPVLIIFTVLAALLAVP-----LLMALLDSGSFTLFFFLVLGM---ALI 325
Query: 402 TASYAGAMA 410
Y G M
Sbjct: 326 GGMYTGPMG 334
>gnl|CDD|184957 PRK14995, PRK14995, methyl viologen resistance protein SmvA;
Provisional.
Length = 495
Score = 32.8 bits (75), Expect = 0.55
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 30/118 (25%)
Query: 124 GVLTQRFGTK-------TVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGIASGLTW 176
G L R G K T+FG + L A P A LIA R++ I + +
Sbjct: 62 GALGDRIGFKRLLMLGGTLFGLASLAAA----FSPTA-----SWLIATRALLAIGAAMIV 112
Query: 177 PAMYALVGHWIPSNERSRFMS-------SFQGFSFGIGLTYPLCG-FLIAHYGWRSVF 226
PA A + + E+ R M+ G +FG PL G L+ H+ W SVF
Sbjct: 113 PATLAGIRA-TFTEEKQRNMALGVWAAVGSGGAAFG-----PLVGGILLEHFYWGSVF 164
>gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional.
Length = 471
Score = 32.0 bits (73), Expect = 0.78
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 13/136 (9%)
Query: 116 YILSQVV----GGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGIA 171
Y+L+ V G L R G + +F + ++ + SL + L+ L+ R +QG+
Sbjct: 54 YVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLN--ELLLARVLQGVG 111
Query: 172 SGLTWPAMYALVGHWIPSNERSRFMS--SFQGFSFGIG--LTYPLCGFLIAHYGWRSVFY 227
+ P V +P R ++M+ +F +G L L G L+ + W +F
Sbjct: 112 GAMMVPVGRLTVMKIVP---REQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL 168
Query: 228 TTGSLGAIWCVAWWFL 243
+G I +A L
Sbjct: 169 INIPVGIIGAIATLML 184
>gnl|CDD|129974 TIGR00896, CynX, cyanate transporter. This family of proteins is
involved in active transport of cyanate. The cyanate
transporter in E.Coli is used to transport cyanate into
the cell so it can be metabolized into ammonia and
bicarbonate. This process is used to overcome the
toxicity of environmental cyanate [Transport and binding
proteins, Other].
Length = 355
Score = 31.3 bits (71), Expect = 1.3
Identities = 66/346 (19%), Positives = 114/346 (32%), Gaps = 58/346 (16%)
Query: 115 CYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLL--IPQAAVLHYGALIALRSIQGIAS 172
C+ + + L +RFG + L+ A L+ P A+L G + I I +
Sbjct: 47 CFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALIGVGI-AIIN 105
Query: 173 GLTWPAMYALVGHWIPSNERSRFMSSFQ------GFSFGIGLTYPLCGFLIAHYGWRSVF 226
L + +L+ P +R M+ G + T PL H W+
Sbjct: 106 VL----LPSLIKRDFP--QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGH--WQQAL 157
Query: 227 YTTGSLGAIWCVAWWFLAFDAPLKHPRITRKELDYIQENIEPTIVGSKGLKVPWVSILTS 286
+ +AW P++ R+ ++ V I S
Sbjct: 158 AWWALPALLALLAWI----------PQVRRRV-----------AANQTTTRLTPVRIWRS 196
Query: 287 PPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYL 346
P AW + + + ++Y I P + + G S T G L L S++L L
Sbjct: 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILISH-GASAATAGSLLALMQLAQAASALLIPAL 255
Query: 347 ADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALVLITWFVAVTL-----I 401
A ++ + R + V ++ L+G G A + W A+ L
Sbjct: 256 ARRVKDQ--------RGI------VAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQGG 301
Query: 402 TASYAGAMANVVDIGPNFAGPILAFAQTIHMTASFLSPMVAGYFLQ 447
A + + A + A AQ+I + L P+ G
Sbjct: 302 AFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD 347
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
Length = 394
Score = 31.4 bits (72), Expect = 1.3
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 19/146 (13%)
Query: 107 AILSSFYWCYILSQVVGGVLTQRFGTKTV--FGFSQ-LVTAICSLLIPQAAVLHYGALIA 163
A+++++ Y LSQ+ G L+ R G + V G S ++ + +L LIA
Sbjct: 47 AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS-----LTVLIA 101
Query: 164 LRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQGFSFGI---GLTYPLCGFLIAHY 220
+IQG+ +G+ M + + + R +S + GI L PL G L+
Sbjct: 102 ASAIQGLGTGVG-GVMARTLPRDLYEGTQLRHANSL--LNMGILVSPLLAPLIGGLLTTL 158
Query: 221 -GWRSVFYTTGSLGAIWCVAWWFLAF 245
GWR+ + + F
Sbjct: 159 FGWRACY----LFLLLLGAGVTFSMA 180
>gnl|CDD|131722 TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10
family. CRISPR is a widespread repeat family in
prokaryotes. At least 45 different protein families
occur in prokaryotes only when these repeats are
present. This family, a minor CRISPR-associated protein
family, seems largely restricted to the Cyanobacteria.
It belongs to the RAMP superfamily ( pfam03787) [Mobile
and extrachromosomal element functions, Other].
Length = 393
Score = 30.6 bits (69), Expect = 2.0
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 14/102 (13%)
Query: 53 SNSNSSQPYCYVATEPGTSARGNVSELLFNDTMLLEKPNVNEEGEFDWDTTTQGAILSSF 112
+ + PY PG+ RG + +L + E + +
Sbjct: 23 GSIGEAYPYI-----PGSVLRGAAAAMLLRQGRGIVAVAARGEDAARLFFDGRTRYFNYA 77
Query: 113 YWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAA 154
Y + +KT GF + LI A
Sbjct: 78 YPVLPATA---------SSSKTNPGFRSEFHGVFDTLIDDFA 110
>gnl|CDD|219016 pfam06417, DUF1077, Protein of unknown function (DUF1077). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 124
Score = 29.2 bits (66), Expect = 2.1
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 349 QLFVRNIMSLTNIRKVFTAI---SQVIPALLVMLIGYLGCNVALVLI 392
L I ++ + F + S LL L+ Y+ + + +
Sbjct: 52 MLLWNPIKAILSTNSAFKPLENNSNRSQLLLQKLV-YVLGQLLALAL 97
>gnl|CDD|188453 TIGR03938, deacetyl_PgaB, poly-beta-1,6-N-acetyl-D-glucosamine
N-deacetylase PgaB. Two well-characterized systems
produce polysaccharide based on N-acetyl-D-glucosamine
in straight chains with beta-1,6 linkages. These are
encoded by the icaADBC operon in Staphylococcus species,
where the system is designated polysaccharide
intercellular adhesin (PIA), and the pgaABCD operon in
Gram-negative bacteria such as E. coli. Both systems
include a putative polysaccharide deacetylase. The PgaB
protein, described here, contains an additional domain
lacking from its Gram-positive counterpart IcaB
(TIGR03933). Deacetylation by this protein appears
necessary to allow export through the porin PgaA [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 619
Score = 30.7 bits (70), Expect = 2.2
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 12/34 (35%)
Query: 176 WPAMYALVGHWI--PSNE----------RSRFMS 197
+PA+ ALVG W+ P+N+ R RF++
Sbjct: 88 YPAVLALVGSWLDTPANQKVDYGGEKLPRDRFLT 121
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 30.4 bits (69), Expect = 2.4
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 98 FDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLI------- 150
F T GA S L++ +GG ++ R G S L A+ + L+
Sbjct: 256 FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSP 315
Query: 151 PQAAVLHYGALIALRSIQGIASGLTWPAM 179
AV +AL G +G T+ +
Sbjct: 316 LSLAVF-IVLFVALFFFSGAGNGSTFALV 343
>gnl|CDD|236564 PRK09556, uhpT, sugar phosphate antiporter; Reviewed.
Length = 467
Score = 30.0 bits (68), Expect = 3.1
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 132 TKTVFGFSQLVTAICSLLIPQAAVL-----HYGALIALRSIQGIASGLTWPAMYALVGHW 186
TK F +++AIC L A L G +IAL ++ G P Y+ + W
Sbjct: 93 TKQFLPFLLILSAICMLGF--GASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRW 150
Query: 187 IPSNERSRFM 196
P +R RF+
Sbjct: 151 TPRRKRGRFL 160
>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease. This protein is
a part of the Major Facilitator Superfamily (Pfam family
pfam07690). Member of this family are found in a number
of proteobacterial genomes, but only in the context of
having genes for 4-hydroxyphenylacetate (4-HPA)
degradation. The protein is characterized by Prieto, et
al. (PMID:9315705) as 4-hydroxyphenylacetate permease in
E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are
shown to competitively inhibit 4-HPA transport and
therefore also interact specificially.
Length = 412
Score = 30.0 bits (67), Expect = 3.6
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 160 ALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQ-GFSFGIGLTYPLCGFLIA 218
+L LR + GIA P + + W P+ R+R + F + L L G+++A
Sbjct: 98 SLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA 157
Query: 219 H------YGWRSVFYTTGSLGAIWCVAWWFLAFDAPLKHPRITRKELDYIQENI 266
GW+ +F G I V WF D+P K + ++ ++E I
Sbjct: 158 LDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMI 211
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 29.7 bits (67), Expect = 4.6
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 6/135 (4%)
Query: 98 FDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLH 157
F T + +S VGG+L +FG + V ++ + A
Sbjct: 33 FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG--FTFYAIADS 90
Query: 158 YGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQGFSFGIG--LTYPLCGF 215
AL + G+ + W P ++ S +G+G + PL
Sbjct: 91 LAALYLTYGLASAGVGIAYGIALNTAVKWFP--DKRGLASGIIIGGYGLGSFILSPLITS 148
Query: 216 LIAHYGWRSVFYTTG 230
+I G + F G
Sbjct: 149 VINLEGVPAAFIYMG 163
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
[Inorganic ion transport and metabolism].
Length = 681
Score = 29.5 bits (67), Expect = 5.8
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 346 LADQLFVRN-IMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALVLITWFVAVTLITAS 404
L ++ V+N +M + + + T + P L G N+A+ +I WF T++ A+
Sbjct: 24 LNPRVLVKNPVMFVVEVGSILTTFLTIFPDLFGGTGGSRLFNLAITIILWF---TVLFAN 80
Query: 405 YAGAMA 410
+A A+A
Sbjct: 81 FAEAVA 86
>gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional.
Length = 438
Score = 28.9 bits (65), Expect = 8.0
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 118 LSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLI---PQAAVLHYGA---LIALRSIQGIA 171
L VV G R G K + + + I + LI P + + + A L+ LR+IQG A
Sbjct: 79 LGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFA 138
Query: 172 SGLTWPAMYALVGHWIPSNERSRFMSSFQ-GFSFGIGLTYPLCGFLI--------AHYGW 222
G W L P N+++ + S Q G+ G+ L+ L + +GW
Sbjct: 139 VGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGW 198
Query: 223 RS--VFYTTGSLGAIW 236
R +F L A+W
Sbjct: 199 RIPFLFSIVLVLIALW 214
>gnl|CDD|112098 pfam03268, DUF267, Caenorhabditis protein of unknown function,
DUF267.
Length = 353
Score = 28.5 bits (64), Expect = 9.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 108 ILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSL 148
I +F CY L Q+ G L+ + +FGF L + +C+L
Sbjct: 35 IALTFRRCYTLFQLEGKPLSLGWAECNMFGFMGLQSFVCAL 75
>gnl|CDD|224361 COG1444, COG1444, Predicted P-loop ATPase fused to an
acetyltransferase [General function prediction only].
Length = 758
Score = 28.5 bits (64), Expect = 10.0
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 280 WVSILTSPPA-WAIGITTFGRIWVHYIFIIPGPRY 313
+ +L P W T R F PR+
Sbjct: 121 LLVLLLPPWEEWKTLPTADSRRLSVPPFPDVTPRF 155
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.436
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,152,359
Number of extensions: 2670891
Number of successful extensions: 3579
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3476
Number of HSP's successfully gapped: 163
Length of query: 534
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 433
Effective length of database: 6,457,848
Effective search space: 2796248184
Effective search space used: 2796248184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.3 bits)