RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14136
(534 letters)
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 180 bits (458), Expect = 3e-51
Identities = 68/390 (17%), Positives = 129/390 (33%), Gaps = 20/390 (5%)
Query: 97 EFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLI--PQAA 154
E + G LS Y S+ + G ++ R + ++ A L + A
Sbjct: 56 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 115
Query: 155 VLHYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQ-GFSFGIGLTYPLC 213
+ L + G G+ WP + HW ER +S + + G G+ L
Sbjct: 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175
Query: 214 GFLIAH-YGWRSVFYTTGSLGAIWCVAWWFLAFDAP--LKHPRITRKELDYIQENIEPTI 270
+A W + Y + + + + D P P I + DY + E
Sbjct: 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE 235
Query: 271 VGSKGLKVPWVSILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTG 330
++ +L + W I I + Y + P Y+K + F++ +
Sbjct: 236 QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYF 295
Query: 331 APFLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALV 390
++L +++D++F N T + + V A +V + G N +
Sbjct: 296 LYEYAGIPGTLLCGWMSDKVFRGN-RGATGVFFMTL----VTIATIVYWMNPAG-NPTVD 349
Query: 391 LITWFVAVTLITASYAGAMANVVDIGP-NFAGPILAFAQTI-HMTASFLSPMVAGYFLQD 448
+I V LI + +++ P AG F ++ S + + GY +
Sbjct: 350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD- 408
Query: 449 DETSLESWRQVFL-IAGAVGSCTYFFYQVL 477
W F+ + G V+
Sbjct: 409 ----FFGWDGGFMVMIGGSILAVILLIVVM 434
Score = 43.9 bits (104), Expect = 9e-05
Identities = 15/169 (8%), Positives = 41/169 (24%), Gaps = 8/169 (4%)
Query: 97 EFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRF---GTKTVFGFSQLVTAICSLLIPQA 153
+ + + I ++ G ++ + F + I +++
Sbjct: 282 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN 341
Query: 154 AVLHYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQGFS---FGIGLTY 210
+ + + G + P + F G G
Sbjct: 342 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG-TAAGFTGLFGYLGGSVAAS 400
Query: 211 PLCGFLIAHYGWRSVFYTTGSLGAIWCVAWWFLAFDAPLKHPRITRKEL 259
+ G+ + +GW F + + + + +EL
Sbjct: 401 AIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI-GEKRRHEQLLQEL 448
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 60.7 bits (148), Expect = 4e-10
Identities = 52/346 (15%), Positives = 106/346 (30%), Gaps = 30/346 (8%)
Query: 109 LSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQ 168
+ ++ Y +SQ+ G ++ R G + V + + +L+ LIA ++Q
Sbjct: 41 MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA--VTTSSLTVLIAASAMQ 98
Query: 169 GIASGLTWPAMYALVGHWIPSNERSRFMSSFQGFSFGIGLTYPLCG-FLIAHYGWRSVFY 227
G+ +G+ L + S L PL G L + WR+ +
Sbjct: 99 GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYL 158
Query: 228 TTGSLGAIWCVAWWFLAFDAPLKHPRITRKELDYIQENIEPTIVGSKGLKVPWVSILTSP 287
L A + +A P P + ++ S + ++ +
Sbjct: 159 FLLVLCA---GVTFSMARWMPETRPVDAPR----------TRLLTS------YKTLFGNS 199
Query: 288 PAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYLA 347
+ G + F M +LG S T +L P + +
Sbjct: 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILP--------IPAAFFG 251
Query: 348 DQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALVLITWFVAVTLITASYAG 407
R + + + L+ + + NV +L+ + +
Sbjct: 252 AWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPL 311
Query: 408 AMANVVDIGPNFAGPILAFAQTIHMTASFLSPMVAGYFLQDDETSL 453
A + ++ P AG A + S + ++ Q + SL
Sbjct: 312 ATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSL 357
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 1e-08
Identities = 71/482 (14%), Positives = 135/482 (28%), Gaps = 169/482 (35%)
Query: 63 YVATEPGTSARGNVSELL------FNDTMLLEKPNVNE-----EGEFDWDTTTQGAILSS 111
YV++ S G ++L F + L +++ E D ++ +
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-DIHALAAKLLQENDTTLVKTKELIKN 125
Query: 112 FYWCYIL----------SQVVGGVLTQRFGTKTVFG--------FSQLV------TAICS 147
+ I+ S + V +FG F +L +
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 148 LLIPQAAVLHYGALIALRSIQGIASGLTWPAMYAL---VGHWI------PSNERSRFMSS 198
LI +A L L I + L ++ + W+ P + ++ S
Sbjct: 186 DLIKFSAET----LSEL-----IRTTLDAEKVFTQGLNILEWLENPSNTPDKD---YLLS 233
Query: 199 FQGFSF-GIGLTYPLCGFLIAHYGWRSVFYTTGSL-----GAIWCVA------------- 239
S IG+ L +++ + + +T G L GA
Sbjct: 234 IP-ISCPLIGVI-QLAHYVVTA---KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 240 W--WFLAFDAPLK------------HPRITRKELDYIQENIE-----PT-IVGSKGLKVP 279
W +F++ + +P + +++++E P+ ++ L
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSL-PPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 280 WV-SILTS-----PPAWAIGITTF-GRIWVHYIFIIPGP-----------RYMKTILG-- 319
V + P + I+ G ++ GP R K G
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGA----KNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 320 -----FS-----IQTNGLLTGAPFLCSYLSSVLFCYLADQLFVRNIM----SL------- 358
FS L +PF L D L N+ +
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD-LVKNNVSFNAKDIQIPVYDT 462
Query: 359 ---TNIRKVFTAISQVIPALLVMLIGYLGCNVALVLITWFVAVTLITASYAGAMANVVDI 415
+++R + S I +V I L W T A++ ++D
Sbjct: 463 FDGSDLRVL----SGSISERIVDCIIRLPVK-------W-ETTTQFKATH------ILDF 504
Query: 416 GP 417
GP
Sbjct: 505 GP 506
Score = 39.6 bits (92), Expect = 0.003
Identities = 37/242 (15%), Positives = 70/242 (28%), Gaps = 90/242 (37%)
Query: 312 RYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYLADQLFVRNIMSLT---------NIR 362
+ K GFSI ++ P ++ F + N ++
Sbjct: 1651 NHFKDTYGFSIL--DIVINNP----VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 363 KVF---------------------TAISQVIPALLVMLIGYLGCNVAL--VLITWFVAVT 399
K+F T +Q PAL +M A L + +
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQ--PALTLM-------EKAAFEDLKSKGLIPA 1755
Query: 400 LITASYAG-------AMANVVDIGPNFAGPILAFAQTIHMTASFLSPMVA--GYFLQD-- 448
A++AG A+A++ A +++ + +V G +Q
Sbjct: 1756 --DATFAGHSLGEYAALASL-------AD-VMSIESLVE--------VVFYRGMTMQVAV 1797
Query: 449 --DETSLESWRQVFLIAGAVGSCTYFFYQVLGTSEVQPW-NQLKPATG---SPRN-NKSP 501
DE ++ + + G V + +Q ++ TG N N
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAA-------SFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Query: 502 EQ 503
+Q
Sbjct: 1851 QQ 1852
Score = 32.7 bits (74), Expect = 0.41
Identities = 32/164 (19%), Positives = 46/164 (28%), Gaps = 57/164 (34%)
Query: 56 NSSQPYCYVATEPGTSARGNVSELLFN---DTMLLEKPNVNEEGEFDWDTTTQG--AILS 110
N + E G R N S ++F D L + E E T + +LS
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 111 SFYWCYILSQVVGGVLTQRFGTKTVFGFSQ--LVT---AICSLL-----IPQAAVL--H- 157
TQ F+Q L A L IP A H
Sbjct: 1728 ---------------ATQ---------FTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 158 ---YGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSS 198
Y AL + +A ++ ++ +V R M
Sbjct: 1764 LGEYAALAS------LADVMSIESLVEVV------FYRGMTMQV 1795
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 53.8 bits (129), Expect = 8e-08
Identities = 14/146 (9%), Positives = 41/146 (28%), Gaps = 5/146 (3%)
Query: 117 ILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAVLHYGALIALRSIQGIASGLTW 176
++ R G K + + ++ + + ++ L+++
Sbjct: 273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS--SFATSALEVVILKTLHMFEVPFLL 330
Query: 177 PAMYALVGHWIPSNERSRFMSSFQGFSFGIG--LTYPLCGFLIAHYGWRSVFYTTGSLGA 234
+ + + F + L G + G++ + G +
Sbjct: 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVAL 390
Query: 235 I-WCVAWWFLAFDAPLKHPRITRKEL 259
++ + L+ PL R E+
Sbjct: 391 GFTLISVFTLSGPGPLSLLRRQVNEV 416
Score = 42.2 bits (99), Expect = 3e-04
Identities = 52/379 (13%), Positives = 106/379 (27%), Gaps = 40/379 (10%)
Query: 106 GAILSSFYWCYILSQVVGGVLTQRFGT-KTVFGFSQLVTAICSLLIP-QAAVLHYGALIA 163
G I ++ +L Q + G+L+ + G K + + + + L ++
Sbjct: 46 GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105
Query: 164 LRSIQGIASGLTWPAMYALVGHWIPSNERSRF--MSSFQGF-SFGIGLTYPLCGFLIAHY 220
+ GI G + A V +I R + F G L + G +
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN 165
Query: 221 GWRSVFYTTGSLGAIWCVAWWFLAFDAPLKHPRITRKELDYIQENIEPTIVGSKGLKVPW 280
+ VF+ I V +F DAP + S
Sbjct: 166 N-QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN-----------HSAFSLKLA 213
Query: 281 VSILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSS 340
+ + P W + + G + +F + T + + + G L +
Sbjct: 214 LELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFF-TSFFATGEQGTRVFGYVTTMGELLN 272
Query: 341 VLFCYLADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALVLITWFVAVTL 400
+ A + R + ++ A +M + +G + A + + TL
Sbjct: 273 ASIMFFAPLIINR-----------IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTL 321
Query: 401 ITASYAGAMANVVD-IGPNFAGPILAFAQTIHMTASF-----LSPMVAGYFLQDDETSLE 454
+ I F A + ++AG +
Sbjct: 322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-----SI 376
Query: 455 SWRQVFLIAGAVGSCTYFF 473
++ +L+ G V
Sbjct: 377 GFQGAYLVLGLVALGFTLI 395
Score = 30.7 bits (69), Expect = 1.2
Identities = 26/161 (16%), Positives = 46/161 (28%), Gaps = 6/161 (3%)
Query: 311 PRYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYLADQLF-VRNIMSLTNIRKVFTAIS 369
P ++ I S G++ A L S L LF L+D+L + ++ + V A
Sbjct: 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF 90
Query: 370 QVIPALLVMLIGYLGCNVALVLITWFVAVTLITASYAGAMANVVDIGPNFAGPILAFAQT 429
+ ++ L ++ + F A A F G F
Sbjct: 91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEF-GRARMFG-- 147
Query: 430 IHMTASFLSPMVAGYFLQDDETSLESWRQVFLIAGAVGSCT 470
L + G + + + AV
Sbjct: 148 --CVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 1e-04
Identities = 34/276 (12%), Positives = 75/276 (27%), Gaps = 63/276 (22%)
Query: 246 DAPLKHPR-ITRKEL-DYIQE---NIEP----TIVGSKGL-KVPWVSILTSPPAWAIGIT 295
D + ++R + +++ + P I G G K + + + +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK----TWVALDVCLSYKVQ 177
Query: 296 T---FGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYLADQLF- 351
F W++ L +L L + + +D
Sbjct: 178 CKMDFKIFWLN--------------LKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSSN 222
Query: 352 -VRNIMSLTNIRKVFTAISQVIPALLVM-------LIGY--LGCNVALVLITWFVAVTLI 401
I S+ + LLV+ L C + +L T F VT
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI--LLTTRFKQVTDF 280
Query: 402 TASYAGAMANVVDIGPNFAGPILA--FAQTIHMTASFL-------SPMV---AGYFLQDD 449
++ ++ + + + L +P ++D
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 450 ETSLESWRQVFL--IAGAVGSCTYFFYQVLGTSEVQ 483
+ ++W+ V + + S VL +E +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESS----LNVLEPAEYR 372
Score = 32.5 bits (73), Expect = 0.37
Identities = 37/217 (17%), Positives = 80/217 (36%), Gaps = 33/217 (15%)
Query: 254 ITRKELDYIQENIEPTIVGSKGLKVPWVSILTSPPAWAIGITTF--GRIWVHYIFIIPGP 311
++++E+D+I V S L++ W +L+ + F + ++Y F+
Sbjct: 46 LSKEEIDHIIM--SKDAV-SGTLRLFWT-LLSKQEE---MVQKFVEEVLRINYKFL---- 94
Query: 312 RYMKTILGFSIQTNGLLTGAPFLCSYLSSVLFCYLADQLFV-RNIMSLTNIRKVFTAISQ 370
M I Q + + Y+ Y +Q+F N+ L K+ A+ +
Sbjct: 95 --MSPIKTEQRQPSMMTR------MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 371 VIPALLVMLIGYLGCNVALVLITWFVAVTLITASYAGAMANVV---DIGP-NFAGPILAF 426
+ PA V++ G LG TW ++ M + ++ N +L
Sbjct: 147 LRPAKNVLIDGVLGSGK-----TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 427 AQTI--HMTASFLSPMVAGYFLQDDETSLESWRQVFL 461
Q + + ++ S ++ S+++ + L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
transport, major facilitator SUPE transporter, MFS;
3.30A {Streptococcus thermophilus}
Length = 491
Score = 36.6 bits (85), Expect = 0.021
Identities = 53/305 (17%), Positives = 111/305 (36%), Gaps = 32/305 (10%)
Query: 95 EGEFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRF-GTKTVFGFSQLVTAI--CSLLIP 151
G+ T +I++ + LS +GG + R G + + ++ + L +P
Sbjct: 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP 105
Query: 152 QAAVLHYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQGFSFGI---GL 208
A +G++I + I +G P + LVG ++R R + F F FGI
Sbjct: 106 FGASALFGSIILI----IIGTGFLKPNVSTLVGTLYDEHDRRR-DAGFSIFVFGINLGAF 160
Query: 209 TYPL-CGFLIAHYGWRSVFYTTGSLGAIWCVAWWF-----LAFDAPLKHPRITRKELDYI 262
PL G G+ F I + ++F L + +E+ +
Sbjct: 161 IAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPL 220
Query: 263 QENIEPTIVGSKGLKVPWVSILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFS- 321
+ + G + V + + I + T I + + +M + + +
Sbjct: 221 LVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFA----WMISSVKVTS 276
Query: 322 IQTNGLLTGAPFLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVF-----TAISQVIPALL 376
+ +++ P +++VLF + +Q V +++ +V + Q + L
Sbjct: 277 TEHLRVVSYIPLF---IAAVLFWAIEEQGSV--VLATFAAERVDSSWFPVSWFQSLNPLF 331
Query: 377 VMLIG 381
+ML
Sbjct: 332 IMLYT 336
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 33.0 bits (75), Expect = 0.24
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 2/114 (1%)
Query: 97 EFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAI-CSLLIPQAAV 155
F G I S+FY+ Y + + G+L ++ K + A+ +L P A +
Sbjct: 55 AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI 114
Query: 156 LHYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQGFSFGIGLT 209
++Y + I G A V P + ++ Q F G
Sbjct: 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF-NSFGAI 167
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin
fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A
4afr_A
Length = 367
Score = 31.1 bits (69), Expect = 0.97
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 447 QDDETSLE---SWRQVFLIAGAVGSCTYFFYQVLGTSEVQPWNQLKPATGSPRNNKSPEQ 503
D++TS + + GA G+ T +L ++ + +L T K +Q
Sbjct: 279 ADEQTSADVKNTATFGTGSTGAGGAATQCITCMLMNNQSLSYGKLLIETRDMLKRKRFKQ 338
Query: 504 KP 505
P
Sbjct: 339 VP 340
>1ppr_M PCP, peridinin-chlorophyll protein; light harvesting protein,
photosynthesis, carotenoids, dinoflagellates,
light-harvesting protein; HET: CLA PID DGD; 2.00A
{Amphidinium carterae} SCOP: a.131.1.1 a.131.1.1
Length = 312
Score = 29.5 bits (65), Expect = 2.4
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 149 LIPQAAVLHYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQGFSFGIGL 208
+ AA H+ A+ ++ + G+ S + A+ A +G I S +S M + +
Sbjct: 221 ALKAAAEAHHKAIGSIDA-TGVTSAADYAAVNAALGRVIASVPKSTVMDVYNAMAGVTDT 279
Query: 209 TYPLCGF 215
+ PL F
Sbjct: 280 SIPLNMF 286
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE PG4; 2.35A
{Clostridium novyi}
Length = 393
Score = 28.0 bits (63), Expect = 8.7
Identities = 12/84 (14%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 383 LGCNVALVLITWFVAVTLITASYAGAMANVVDIGPNFAGPILAFAQTIHMTASFLSPMVA 442
+ +++ ++IT L + + ++ + P FA MT SF + +++
Sbjct: 134 IVDDISHLIITCNSEGKLALHAKRNYNSFLL-LMPE-ESNDKGFA----MTGSFSTMLLS 187
Query: 443 GYFLQDDETSLESWRQVFLIAGAV 466
+ + + +Q+ I+
Sbjct: 188 CLLIFNLDKLESIGKQIESISMQG 211
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.436
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,063,974
Number of extensions: 470054
Number of successful extensions: 1027
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1006
Number of HSP's successfully gapped: 31
Length of query: 534
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 436
Effective length of database: 3,965,535
Effective search space: 1728973260
Effective search space used: 1728973260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.4 bits)