RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14136
         (534 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 92.4 bits (228), Expect = 1e-20
 Identities = 63/400 (15%), Positives = 123/400 (30%), Gaps = 17/400 (4%)

Query: 97  EFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLL--IPQAA 154
           E  +     G  LS     Y  S+ + G ++ R   +       ++ A   L       A
Sbjct: 53  EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 112

Query: 155 VLHYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQG-FSFGIGLTYPLC 213
                 +  L  + G   G+ WP     + HW    ER   +S +    + G G+   L 
Sbjct: 113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 172

Query: 214 GFLIA-HYGWRSVFYTTGSLGAIWCVAWWFLAFDAP--LKHPRITRKELDYIQENIEPTI 270
              +A    W +  Y       +  +  + +  D P     P I   + DY  +  E   
Sbjct: 173 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE 232

Query: 271 VGSKGLKVPWVSILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTG 330
                 ++    +L +   W I I       + Y  +   P Y+K +  F++  +     
Sbjct: 233 QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYF 292

Query: 331 APFLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALV 390
                    ++L  +++D++F  N  +          I     A +V  +   G     +
Sbjct: 293 LYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI-----ATIVYWMNPAGNPTVDM 347

Query: 391 LITWFVAVTLITASYAGAMANVVDIGPNFAGPILAFAQTI-HMTASFLSPMVAGYFLQDD 449
           +    +   +        +  +       AG    F     ++  S  +  + GY +   
Sbjct: 348 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD-- 405

Query: 450 ETSLESWRQVFLIAGAVGSCTYFFYQVLGTSEVQPWNQLK 489
                 W   F++             V+   E +   QL 
Sbjct: 406 ---FFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLL 442



 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 13/169 (7%), Positives = 38/169 (22%), Gaps = 2/169 (1%)

Query: 91  NVNEEGEFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLI 150
               +      ++    +         L          R        F   +  I +++ 
Sbjct: 276 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 335

Query: 151 PQAAVLHYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQGFSF--GIGL 208
                 +    +    + G         +        P             F +  G   
Sbjct: 336 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 395

Query: 209 TYPLCGFLIAHYGWRSVFYTTGSLGAIWCVAWWFLAFDAPLKHPRITRK 257
              + G+ +  +GW   F        +  +    +      +H ++ ++
Sbjct: 396 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 38/333 (11%), Positives = 88/333 (26%), Gaps = 4/333 (1%)

Query: 97  EFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLL--IPQAA 154
                 +  G I ++     +L Q + G+L+ + G +    +      +      I    
Sbjct: 37  INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96

Query: 155 VLHYGALIALRSIQGIASGLTWPAMYALVG--HWIPSNERSRFMSSFQGFSFGIGLTYPL 212
            L    ++    + GI  G  + A    V       S   +      + F          
Sbjct: 97  PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS 156

Query: 213 CGFLIAHYGWRSVFYTTGSLGAIWCVAWWFLAFDAPLKHPRITRKELDYIQENIEPTIVG 272
              ++     + VF+       I  V  +F   DAP           ++   +++  +  
Sbjct: 157 IVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALEL 216

Query: 273 SKGLKVPWVSILTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAP 332
            +  K+ ++S+     +    +           F   G +  +     +     L     
Sbjct: 217 FRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM 276

Query: 333 FLCSYLSSVLFCYLADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALVLI 392
           F    + + +    A  L    +          T+  +V+    + +       V     
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336

Query: 393 TWFVAVTLITASYAGAMANVVDIGPNFAGPILA 425
                    +A+                  +LA
Sbjct: 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369



 Score = 47.5 bits (111), Expect = 3e-06
 Identities = 13/150 (8%), Positives = 39/150 (26%), Gaps = 4/150 (2%)

Query: 96  GEFDWDTTTQGAILSSFYWCYILSQVVGGVLTQRFGTKTVFGFSQLVTAICSLLIPQAAV 155
              +  T   G + +              ++  R G K     +  + ++  +    A  
Sbjct: 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT- 310

Query: 156 LHYGALIALRSIQGIASGLTWPAMYALVGHWIPSNERSRFMSSFQGFSFGIG--LTYPLC 213
                ++ L+++            +  +         +        F   +       L 
Sbjct: 311 -SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369

Query: 214 GFLIAHYGWRSVFYTTGSLGAIWCVAWWFL 243
           G +    G++  +   G +   + +   F 
Sbjct: 370 GNMYESIGFQGAYLVLGLVALGFTLISVFT 399



 Score = 37.1 bits (84), Expect = 0.005
 Identities = 25/191 (13%), Positives = 55/191 (28%), Gaps = 7/191 (3%)

Query: 284 LTSPPAWAIGITTFGRIWVHYIFIIPGPRYMKTILGFSIQTNGLLTGAPFLCSYLSSVLF 343
           L +   W  G+  F   ++   +    P ++  I   S    G++  A  L S L   LF
Sbjct: 4   LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLF 63

Query: 344 CYLADQLFVRNIMSLTNIRKVFTAISQVIPALLVMLIGYLGCNVALVLITWFVAVTLITA 403
             L+D+L +R  +       ++     ++      +  +       +L+   V    +  
Sbjct: 64  GLLSDKLGLRKYL-------LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGF 116

Query: 404 SYAGAMANVVDIGPNFAGPILAFAQTIHMTASFLSPMVAGYFLQDDETSLESWRQVFLIA 463
            +      V       +           M       + A         + +    +    
Sbjct: 117 CFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGC 176

Query: 464 GAVGSCTYFFY 474
             + +   FF 
Sbjct: 177 ALILAVLLFFA 187


>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
           {Rhodothermus marinus [TaxId: 29549]}
          Length = 381

 Score = 28.4 bits (63), Expect = 2.3
 Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 7/67 (10%)

Query: 177 PAMYALVGHWIPSNERSRFMSSFQGFSFGIGLTYPLCGFLIAHYGWRSVFYTTGSLGAIW 236
            +  A++   I         +     +    +  PL G L+     R V         + 
Sbjct: 131 ASTDAMITWMI----TRTGFALLWPHTELSWIEQPLGGELLMR---REVAAMLYEDERVR 183

Query: 237 CVAWWFL 243
             + W +
Sbjct: 184 RRSDWGI 190


>d3coxa2 d.16.1.1 (A:319-450) Cholesterol oxidase {Brevibacterium
           sterolicum [TaxId: 1702]}
          Length = 132

 Score = 25.6 bits (56), Expect = 9.8
 Identities = 5/27 (18%), Positives = 11/27 (40%)

Query: 84  TMLLEKPNVNEEGEFDWDTTTQGAILS 110
           ++ L      E   F +++ T    L+
Sbjct: 56  SLYLAITKNPERARFQFNSGTGKVDLT 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,963,019
Number of extensions: 88225
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 13
Length of query: 534
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 444
Effective length of database: 1,171,896
Effective search space: 520321824
Effective search space used: 520321824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.2 bits)