Query psy14139
Match_columns 327
No_of_seqs 364 out of 1683
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 20:30:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0153|consensus 100.0 2E-102 4E-107 714.2 22.4 281 5-287 4-302 (377)
2 KOG0145|consensus 99.8 1.5E-21 3.3E-26 174.4 1.5 191 88-316 38-237 (360)
3 KOG0148|consensus 99.6 2.5E-16 5.5E-21 141.8 6.1 81 210-291 161-241 (321)
4 PLN03134 glycine-rich RNA-bind 99.6 1.9E-14 4.1E-19 121.9 11.6 79 212-291 33-117 (144)
5 KOG0144|consensus 99.6 2.2E-16 4.7E-21 149.9 -1.6 176 88-293 28-211 (510)
6 TIGR01659 sex-lethal sex-letha 99.5 3E-15 6.5E-20 143.9 1.3 78 212-290 192-277 (346)
7 PF00076 RRM_1: RNA recognitio 99.5 3.9E-13 8.4E-18 98.3 8.6 65 216-281 1-70 (70)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 6.3E-13 1.4E-17 127.6 12.0 76 214-290 270-351 (352)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 6.4E-13 1.4E-17 127.5 11.8 77 213-290 3-85 (352)
10 TIGR01659 sex-lethal sex-letha 99.4 5.6E-13 1.2E-17 128.2 11.3 95 209-310 103-203 (346)
11 KOG0122|consensus 99.4 3.8E-12 8.3E-17 113.5 10.9 77 211-288 187-269 (270)
12 PLN03120 nucleic acid binding 99.4 3.9E-12 8.5E-17 116.1 10.5 74 213-288 4-80 (260)
13 KOG0149|consensus 99.4 5.5E-12 1.2E-16 112.1 10.9 78 208-287 7-90 (247)
14 KOG0145|consensus 99.3 3.8E-12 8.2E-17 114.5 9.0 98 209-313 37-140 (360)
15 KOG0107|consensus 99.3 5.4E-12 1.2E-16 107.5 8.5 78 213-291 10-88 (195)
16 KOG0105|consensus 99.3 6.3E-12 1.4E-16 108.0 7.8 76 212-288 5-83 (241)
17 PF14259 RRM_6: RNA recognitio 99.3 2.1E-11 4.6E-16 89.7 8.5 65 216-281 1-70 (70)
18 TIGR01628 PABP-1234 polyadenyl 99.3 2.2E-11 4.9E-16 124.4 11.4 91 214-309 1-97 (562)
19 TIGR01648 hnRNP-R-Q heterogene 99.3 3E-11 6.5E-16 122.6 11.6 77 212-291 232-310 (578)
20 smart00362 RRM_2 RNA recogniti 99.3 4.4E-11 9.6E-16 86.3 9.5 68 215-283 1-72 (72)
21 KOG0125|consensus 99.3 1.7E-11 3.7E-16 113.4 8.7 75 213-288 96-174 (376)
22 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 3.2E-11 6.8E-16 121.2 11.2 77 213-289 2-79 (481)
23 TIGR01645 half-pint poly-U bin 99.2 3.9E-11 8.5E-16 122.1 11.4 75 212-287 106-186 (612)
24 TIGR01645 half-pint poly-U bin 99.2 3.7E-11 8.1E-16 122.2 11.0 78 212-290 203-286 (612)
25 KOG0121|consensus 99.2 1.7E-11 3.8E-16 99.5 6.5 75 211-286 34-114 (153)
26 KOG0117|consensus 99.2 5.2E-11 1.1E-15 114.1 10.7 80 211-293 257-336 (506)
27 PF13893 RRM_5: RNA recognitio 99.2 6.4E-11 1.4E-15 83.7 8.4 55 230-285 1-56 (56)
28 KOG0144|consensus 99.2 2.8E-11 6.1E-16 115.5 7.9 84 209-292 30-121 (510)
29 PLN03121 nucleic acid binding 99.2 8.4E-11 1.8E-15 105.9 10.3 72 212-285 4-78 (243)
30 PLN03213 repressor of silencin 99.2 6E-11 1.3E-15 114.8 9.7 76 211-287 8-87 (759)
31 KOG0151|consensus 99.2 1.2E-10 2.6E-15 116.8 10.5 110 209-325 170-289 (877)
32 TIGR01628 PABP-1234 polyadenyl 99.2 1.1E-10 2.5E-15 119.2 10.8 78 211-289 283-365 (562)
33 KOG4207|consensus 99.2 5.6E-11 1.2E-15 103.8 7.0 80 207-287 7-92 (256)
34 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 1.8E-10 3.9E-15 115.8 11.7 77 211-288 273-351 (481)
35 TIGR01622 SF-CC1 splicing fact 99.2 1.8E-10 4E-15 114.5 11.5 78 210-289 86-169 (457)
36 TIGR01622 SF-CC1 splicing fact 99.1 1.8E-10 3.9E-15 114.6 10.8 73 213-286 186-264 (457)
37 KOG0132|consensus 99.1 1.2E-10 2.5E-15 118.0 8.1 79 213-292 421-499 (894)
38 TIGR01648 hnRNP-R-Q heterogene 99.1 2.7E-10 5.8E-15 115.7 10.6 74 212-286 57-136 (578)
39 KOG0113|consensus 99.1 6.2E-10 1.3E-14 102.0 11.7 77 211-288 99-181 (335)
40 KOG0111|consensus 99.1 5.6E-11 1.2E-15 104.6 4.6 81 212-293 9-95 (298)
41 TIGR01642 U2AF_lg U2 snRNP aux 99.1 5.8E-10 1.3E-14 112.4 12.6 78 212-290 294-377 (509)
42 cd00590 RRM RRM (RNA recogniti 99.1 7E-10 1.5E-14 80.3 9.7 69 215-284 1-74 (74)
43 KOG0148|consensus 99.1 1.8E-10 3.9E-15 104.3 7.4 77 213-290 62-144 (321)
44 KOG0130|consensus 99.1 2.3E-10 4.9E-15 93.8 6.4 78 212-290 71-154 (170)
45 smart00360 RRM RNA recognition 99.1 9.6E-10 2.1E-14 78.8 8.3 64 218-282 1-70 (71)
46 TIGR01642 U2AF_lg U2 snRNP aux 99.0 1.3E-09 2.9E-14 109.8 12.0 77 208-286 170-258 (509)
47 COG0724 RNA-binding proteins ( 99.0 1.4E-09 3.1E-14 97.8 10.1 74 213-287 115-194 (306)
48 KOG0114|consensus 99.0 1.5E-09 3.3E-14 85.2 8.5 76 213-289 18-96 (124)
49 KOG0109|consensus 99.0 7.4E-10 1.6E-14 101.3 6.6 73 214-289 3-75 (346)
50 KOG0147|consensus 98.9 7.5E-10 1.6E-14 108.7 4.8 170 96-286 180-356 (549)
51 KOG0117|consensus 98.9 4.3E-09 9.3E-14 101.1 9.6 76 211-287 81-163 (506)
52 KOG0131|consensus 98.9 3.4E-09 7.4E-14 91.1 6.7 74 212-286 8-87 (203)
53 KOG0109|consensus 98.9 3.2E-10 6.9E-15 103.6 0.1 77 211-290 76-152 (346)
54 KOG0126|consensus 98.9 3.1E-10 6.7E-15 97.4 -0.2 75 211-286 33-113 (219)
55 KOG0108|consensus 98.9 5.4E-09 1.2E-13 102.7 7.6 77 214-291 19-101 (435)
56 KOG4206|consensus 98.8 1.3E-08 2.8E-13 90.4 8.5 76 214-290 10-92 (221)
57 KOG0127|consensus 98.8 1.1E-08 2.4E-13 100.5 8.5 77 213-290 117-198 (678)
58 KOG0146|consensus 98.8 4.3E-09 9.2E-14 95.3 5.0 80 213-292 19-105 (371)
59 KOG0124|consensus 98.7 6.6E-09 1.4E-13 97.6 4.1 69 214-283 114-188 (544)
60 KOG0127|consensus 98.7 6.4E-08 1.4E-12 95.2 9.4 79 211-289 290-379 (678)
61 smart00361 RRM_1 RNA recogniti 98.7 7.7E-08 1.7E-12 71.2 7.4 55 227-282 2-69 (70)
62 KOG0146|consensus 98.7 2.4E-08 5.3E-13 90.5 4.8 81 209-290 281-367 (371)
63 KOG0131|consensus 98.6 4.7E-08 1E-12 84.1 6.1 80 214-294 97-183 (203)
64 KOG0123|consensus 98.5 2.6E-07 5.7E-12 89.7 8.1 77 215-293 78-158 (369)
65 KOG1457|consensus 98.5 9.8E-07 2.1E-11 78.3 10.7 80 211-291 32-121 (284)
66 KOG0415|consensus 98.5 3.2E-07 7E-12 86.1 7.8 78 212-290 238-321 (479)
67 KOG4205|consensus 98.5 1.7E-07 3.6E-12 88.6 5.2 94 212-309 5-106 (311)
68 KOG0123|consensus 98.4 5.9E-07 1.3E-11 87.3 8.2 73 214-290 2-77 (369)
69 KOG0110|consensus 98.4 2.5E-07 5.5E-12 93.5 5.0 81 209-290 609-695 (725)
70 KOG4212|consensus 98.4 8.4E-07 1.8E-11 85.4 7.9 76 211-287 42-123 (608)
71 KOG0110|consensus 98.4 1.1E-06 2.3E-11 89.1 8.2 72 214-286 516-596 (725)
72 KOG0116|consensus 98.4 8.6E-07 1.9E-11 86.9 7.4 76 213-290 288-369 (419)
73 KOG4660|consensus 98.3 9.6E-07 2.1E-11 87.3 6.1 72 209-281 71-143 (549)
74 KOG4208|consensus 98.3 2.9E-06 6.4E-11 74.5 8.4 80 208-288 44-130 (214)
75 KOG0124|consensus 98.3 1.6E-06 3.6E-11 81.7 6.7 74 211-285 208-287 (544)
76 KOG1190|consensus 98.2 1.3E-05 2.7E-10 76.9 11.4 78 213-291 297-376 (492)
77 KOG0106|consensus 98.2 1.8E-06 3.9E-11 77.2 5.2 72 214-288 2-73 (216)
78 KOG4205|consensus 98.2 2.8E-06 6E-11 80.4 5.5 79 212-292 96-180 (311)
79 KOG4212|consensus 98.1 5E-06 1.1E-10 80.2 6.7 75 209-284 532-607 (608)
80 KOG4661|consensus 98.1 5.6E-06 1.2E-10 82.0 7.2 76 213-289 405-486 (940)
81 KOG0533|consensus 98.1 1.2E-05 2.6E-10 73.4 8.4 79 210-289 80-163 (243)
82 KOG2202|consensus 98.1 1.8E-06 3.9E-11 78.2 2.5 117 145-287 16-147 (260)
83 KOG4454|consensus 98.0 2.7E-06 5.8E-11 75.4 2.3 71 214-285 10-84 (267)
84 KOG1548|consensus 98.0 2.3E-05 5E-10 73.7 8.5 84 205-289 126-222 (382)
85 KOG2135|consensus 98.0 7.7E-06 1.7E-10 79.6 5.2 78 212-291 371-449 (526)
86 PF14605 Nup35_RRM_2: Nup53/35 97.9 3.6E-05 7.9E-10 53.9 5.4 52 214-266 2-53 (53)
87 PF08777 RRM_3: RNA binding mo 97.7 0.00012 2.6E-09 58.6 6.9 68 215-282 3-74 (105)
88 PF11608 Limkain-b1: Limkain b 97.7 0.0002 4.4E-09 54.5 7.3 69 214-287 3-76 (90)
89 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00025 5.4E-09 56.2 7.8 72 213-287 6-91 (100)
90 KOG4209|consensus 97.6 0.0002 4.3E-09 65.3 7.3 77 210-288 98-180 (231)
91 PF04059 RRM_2: RNA recognitio 97.5 0.00057 1.2E-08 53.9 8.1 75 214-289 2-88 (97)
92 KOG4206|consensus 97.5 0.00045 9.8E-09 61.7 8.2 76 210-286 143-220 (221)
93 COG5175 MOT2 Transcriptional r 97.4 0.00037 8E-09 65.5 6.3 72 214-286 115-201 (480)
94 KOG0106|consensus 97.3 0.00017 3.8E-09 64.6 3.1 72 210-284 96-167 (216)
95 KOG1457|consensus 97.3 0.0003 6.4E-09 62.8 4.4 64 211-275 208-273 (284)
96 KOG1190|consensus 97.3 0.00027 5.8E-09 68.0 4.2 77 211-288 412-491 (492)
97 KOG0112|consensus 97.2 0.00022 4.8E-09 74.4 3.3 85 205-290 447-533 (975)
98 KOG4211|consensus 97.1 0.0029 6.3E-08 62.3 9.2 72 212-286 9-84 (510)
99 smart00356 ZnF_C3H1 zinc finge 97.0 0.00048 1E-08 40.8 2.3 24 143-166 3-26 (27)
100 KOG0120|consensus 97.0 0.0008 1.7E-08 67.3 4.4 96 212-310 288-389 (500)
101 KOG0147|consensus 96.9 0.00053 1.2E-08 68.2 2.4 82 208-291 174-261 (549)
102 KOG0226|consensus 96.9 0.0013 2.8E-08 59.8 4.5 75 210-285 187-267 (290)
103 PF00642 zf-CCCH: Zinc finger 96.6 0.00056 1.2E-08 41.0 0.1 23 144-166 3-26 (27)
104 KOG0129|consensus 96.4 0.014 3E-07 58.0 8.6 56 213-269 259-326 (520)
105 KOG1855|consensus 96.3 0.0042 9E-08 60.3 4.3 58 211-268 229-305 (484)
106 KOG1456|consensus 96.2 0.025 5.5E-07 54.2 8.5 76 213-289 120-200 (494)
107 PF08952 DUF1866: Domain of un 96.0 0.03 6.5E-07 47.2 7.4 71 214-288 28-107 (146)
108 KOG0120|consensus 95.9 0.022 4.7E-07 57.2 7.2 60 228-288 424-492 (500)
109 KOG1456|consensus 95.9 0.051 1.1E-06 52.2 9.2 77 211-288 285-363 (494)
110 KOG1995|consensus 95.8 0.0098 2.1E-07 56.6 4.2 80 210-290 63-156 (351)
111 KOG4676|consensus 95.7 0.039 8.4E-07 53.2 7.7 67 215-283 9-84 (479)
112 KOG4210|consensus 95.7 0.0076 1.6E-07 56.7 2.9 76 214-291 186-267 (285)
113 KOG3152|consensus 95.7 0.0066 1.4E-07 55.3 2.3 66 212-278 73-156 (278)
114 KOG4211|consensus 95.7 0.038 8.1E-07 54.7 7.6 70 214-285 104-179 (510)
115 KOG1548|consensus 95.7 0.048 1E-06 51.8 8.0 75 211-286 263-350 (382)
116 PF04847 Calcipressin: Calcipr 95.6 0.049 1.1E-06 48.0 7.3 64 226-290 8-73 (184)
117 KOG1365|consensus 95.0 0.06 1.3E-06 51.9 6.4 73 213-286 280-360 (508)
118 KOG2193|consensus 94.9 0.018 4E-07 55.9 2.7 79 214-292 2-80 (584)
119 PF15023 DUF4523: Protein of u 94.8 0.14 3.1E-06 43.0 7.4 75 209-286 82-160 (166)
120 KOG0129|consensus 94.5 0.15 3.2E-06 50.9 8.0 56 213-268 370-432 (520)
121 KOG4285|consensus 94.4 0.17 3.6E-06 47.4 7.7 68 214-284 198-266 (350)
122 KOG0112|consensus 94.3 0.015 3.2E-07 61.2 0.6 76 210-286 369-449 (975)
123 PF14608 zf-CCCH_2: Zinc finge 94.0 0.035 7.6E-07 30.4 1.5 18 146-165 1-18 (19)
124 KOG2314|consensus 93.7 0.16 3.4E-06 51.3 6.5 70 214-284 59-140 (698)
125 KOG0115|consensus 93.4 0.16 3.6E-06 46.5 5.5 56 214-269 32-92 (275)
126 KOG2416|consensus 93.2 0.085 1.8E-06 53.4 3.7 77 210-287 441-521 (718)
127 KOG0105|consensus 93.0 0.98 2.1E-05 39.7 9.5 69 205-275 107-175 (241)
128 PF10309 DUF2414: Protein of u 92.9 0.67 1.5E-05 33.4 7.0 53 214-268 6-61 (62)
129 KOG4307|consensus 92.2 0.45 9.8E-06 49.3 7.3 70 214-284 868-943 (944)
130 PF08675 RNA_bind: RNA binding 91.4 0.81 1.7E-05 35.0 6.2 52 214-268 10-61 (87)
131 KOG1996|consensus 91.0 0.74 1.6E-05 43.1 6.8 60 227-287 300-366 (378)
132 KOG4849|consensus 90.5 1.1 2.3E-05 43.0 7.5 65 214-279 81-153 (498)
133 KOG2068|consensus 89.9 0.11 2.4E-06 49.3 0.5 72 214-286 78-161 (327)
134 KOG0128|consensus 89.8 0.23 5E-06 52.3 2.7 77 213-290 736-817 (881)
135 KOG4574|consensus 88.1 0.69 1.5E-05 48.9 4.8 75 215-290 300-376 (1007)
136 PF07576 BRAP2: BRCA1-associat 87.3 4.6 0.0001 32.5 8.2 63 214-277 13-81 (110)
137 KOG0128|consensus 87.3 0.035 7.6E-07 58.2 -5.0 60 209-268 663-728 (881)
138 PF03880 DbpA: DbpA RNA bindin 85.7 1.3 2.7E-05 32.9 3.9 67 215-285 2-74 (74)
139 PF03467 Smg4_UPF3: Smg-4/UPF3 85.1 2 4.3E-05 37.6 5.4 74 212-286 6-96 (176)
140 KOG4307|consensus 85.0 0.51 1.1E-05 48.9 1.9 73 212-285 433-511 (944)
141 PF10013 DUF2256: Uncharacteri 84.4 0.43 9.3E-06 31.5 0.7 12 24-35 8-19 (42)
142 KOG1365|consensus 81.4 1.7 3.7E-05 42.1 3.8 67 214-282 162-237 (508)
143 KOG4410|consensus 80.3 5 0.00011 37.6 6.2 50 213-262 330-380 (396)
144 KOG0804|consensus 80.2 4.7 0.0001 40.0 6.4 67 210-277 71-142 (493)
145 KOG2494|consensus 79.6 0.6 1.3E-05 44.2 0.1 23 144-166 37-60 (331)
146 smart00782 PhnA_Zn_Ribbon PhnA 79.3 1.7 3.6E-05 29.6 2.1 41 19-59 2-45 (47)
147 KOG4019|consensus 78.2 3.4 7.4E-05 36.1 4.3 76 214-290 11-92 (193)
148 KOG1040|consensus 77.2 0.93 2E-05 43.4 0.6 25 143-167 76-100 (325)
149 PF09963 DUF2197: Uncharacteri 75.8 0.59 1.3E-05 32.9 -0.9 32 26-57 4-38 (56)
150 KOG1040|consensus 72.9 2 4.3E-05 41.2 1.6 28 142-169 103-131 (325)
151 PF10650 zf-C3H1: Putative zin 72.1 2.6 5.6E-05 24.2 1.3 20 146-166 2-22 (23)
152 KOG2591|consensus 71.7 9 0.0002 39.1 5.9 68 212-280 174-244 (684)
153 KOG1677|consensus 68.7 3.3 7.2E-05 39.5 2.2 28 143-170 176-204 (332)
154 PF10567 Nab6_mRNP_bdg: RNA-re 67.1 11 0.00023 35.6 5.0 76 211-286 13-106 (309)
155 KOG1595|consensus 66.2 3.6 7.8E-05 41.6 1.9 24 144-167 236-259 (528)
156 COG4338 Uncharacterized protei 65.4 1.9 4.1E-05 29.3 -0.2 12 24-35 12-23 (54)
157 smart00064 FYVE Protein presen 64.7 4 8.6E-05 29.4 1.4 33 24-58 10-42 (68)
158 KOG1763|consensus 62.8 2.5 5.4E-05 39.6 0.1 28 142-169 90-117 (343)
159 cd00065 FYVE FYVE domain; Zinc 61.9 4.6 9.9E-05 27.9 1.3 34 25-70 3-36 (57)
160 PF11767 SET_assoc: Histone ly 60.9 52 0.0011 24.0 6.7 55 224-282 11-65 (66)
161 KOG2253|consensus 60.6 5.1 0.00011 41.5 1.8 68 213-284 40-107 (668)
162 KOG1924|consensus 60.5 12 0.00025 39.9 4.4 25 59-85 311-335 (1102)
163 KOG2185|consensus 60.3 4.3 9.4E-05 39.7 1.2 24 145-168 141-164 (486)
164 KOG4660|consensus 59.7 12 0.00026 38.1 4.1 42 248-290 430-475 (549)
165 KOG2202|consensus 58.4 4.7 0.0001 37.1 1.0 26 143-168 151-176 (260)
166 KOG1039|consensus 58.1 4.1 8.8E-05 39.4 0.6 25 145-169 9-33 (344)
167 smart00291 ZnF_ZZ Zinc-binding 56.4 6.2 0.00013 26.1 1.1 37 23-72 3-39 (44)
168 PF01363 FYVE: FYVE zinc finge 55.6 4.1 9E-05 29.4 0.2 20 21-40 6-25 (69)
169 COG5152 Uncharacterized conser 50.9 6.7 0.00014 34.8 0.7 24 143-166 140-164 (259)
170 PF02318 FYVE_2: FYVE-type zin 50.6 3.3 7.1E-05 33.6 -1.2 36 23-69 53-88 (118)
171 KOG4210|consensus 50.4 13 0.00027 35.1 2.6 74 211-285 86-165 (285)
172 KOG2494|consensus 49.9 9.3 0.0002 36.4 1.6 27 141-168 68-94 (331)
173 cd02341 ZZ_ZZZ3 Zinc finger, Z 49.6 7.8 0.00017 26.4 0.7 32 26-69 2-35 (48)
174 KOG2318|consensus 48.6 1.1E+02 0.0024 31.7 8.8 77 207-284 168-304 (650)
175 PF15513 DUF4651: Domain of un 48.0 35 0.00076 24.6 3.9 19 228-246 9-27 (62)
176 PF04423 Rad50_zn_hook: Rad50 47.5 6.4 0.00014 27.2 0.1 16 19-35 16-31 (54)
177 COG5084 YTH1 Cleavage and poly 46.0 13 0.00027 35.1 1.8 23 146-168 136-159 (285)
178 PF00096 zf-C2H2: Zinc finger, 42.9 7.6 0.00016 21.4 -0.1 10 26-35 2-11 (23)
179 PF13913 zf-C2HC_2: zinc-finge 42.2 12 0.00025 21.7 0.6 11 25-35 3-13 (25)
180 cd02334 ZZ_dystrophin Zinc fin 40.9 16 0.00035 25.0 1.2 31 26-69 2-33 (49)
181 PF07292 NID: Nmi/IFP 35 domai 40.0 60 0.0013 25.1 4.4 61 252-313 1-65 (88)
182 PF00569 ZZ: Zinc finger, ZZ t 38.8 9 0.0002 25.6 -0.3 33 23-68 3-36 (46)
183 KOG4537|consensus 38.0 15 0.00033 31.3 0.9 22 50-71 40-68 (178)
184 TIGR03636 L23_arch archaeal ri 37.2 1.2E+02 0.0026 22.8 5.5 54 215-268 15-73 (77)
185 KOG3002|consensus 37.1 16 0.00035 34.7 1.0 41 25-70 49-90 (299)
186 PF14634 zf-RING_5: zinc-RING 37.0 25 0.00054 23.0 1.7 36 26-66 1-42 (44)
187 PF06827 zf-FPG_IleRS: Zinc fi 36.5 20 0.00044 21.4 1.1 29 24-58 1-29 (30)
188 PRK14548 50S ribosomal protein 35.6 1.2E+02 0.0026 23.2 5.4 54 215-268 22-80 (84)
189 KOG4676|consensus 35.5 5.4 0.00012 38.9 -2.4 76 214-291 152-229 (479)
190 PF13746 Fer4_18: 4Fe-4S diclu 34.8 9.8 0.00021 27.8 -0.6 17 50-71 3-19 (69)
191 KOG1074|consensus 34.7 14 0.0003 39.5 0.2 11 26-36 635-645 (958)
192 COG5552 Uncharacterized conser 33.5 97 0.0021 23.2 4.4 48 73-135 15-66 (88)
193 PF13408 Zn_ribbon_recom: Reco 33.5 40 0.00087 22.9 2.4 33 26-63 7-39 (58)
194 cd02338 ZZ_PCMF_like Zinc fing 32.9 27 0.00058 23.7 1.3 31 26-69 2-33 (49)
195 KOG3049|consensus 32.3 25 0.00055 31.7 1.4 12 33-44 48-59 (288)
196 KOG3476|consensus 31.4 13 0.00027 28.6 -0.5 35 22-67 49-86 (100)
197 KOG4483|consensus 31.1 95 0.002 30.7 5.1 53 214-267 392-445 (528)
198 KOG1492|consensus 30.7 22 0.00048 32.1 0.8 24 143-166 205-229 (377)
199 PF10235 Cript: Microtubule-as 30.7 20 0.00044 27.8 0.5 37 20-67 37-76 (90)
200 PF13465 zf-H2C2_2: Zinc-finge 30.6 16 0.00035 21.1 -0.0 11 25-35 15-25 (26)
201 PF13790 DUF4182: Domain of un 29.9 13 0.00028 24.1 -0.6 7 50-56 3-9 (38)
202 PTZ00303 phosphatidylinositol 29.2 25 0.00054 37.6 0.9 63 24-86 460-545 (1374)
203 PF07292 NID: Nmi/IFP 35 domai 26.2 37 0.00079 26.2 1.2 26 210-235 49-74 (88)
204 PF00403 HMA: Heavy-metal-asso 26.0 2.2E+02 0.0047 19.4 6.4 54 215-268 1-58 (62)
205 KOG2891|consensus 26.0 86 0.0019 29.5 3.8 33 214-246 150-194 (445)
206 KOG2500|consensus 25.9 1.1E+02 0.0024 27.8 4.3 11 276-286 154-164 (253)
207 cd02345 ZZ_dah Zinc finger, ZZ 25.8 42 0.00092 22.7 1.3 30 26-68 2-32 (49)
208 COG5084 YTH1 Cleavage and poly 25.2 47 0.001 31.3 1.9 27 142-168 102-128 (285)
209 PF10217 DUF2039: Uncharacteri 24.8 31 0.00068 26.9 0.6 17 51-67 72-88 (92)
210 PF12874 zf-met: Zinc-finger o 24.0 24 0.00052 19.7 -0.1 10 26-35 2-11 (25)
211 COG5252 Uncharacterized conser 23.7 42 0.0009 30.7 1.2 25 143-167 84-108 (299)
212 KOG1813|consensus 23.0 28 0.00061 32.8 0.1 24 143-166 185-209 (313)
213 PF02714 DUF221: Domain of unk 20.0 1.3E+02 0.0029 28.2 4.0 33 252-287 1-33 (325)
No 1
>KOG0153|consensus
Probab=100.00 E-value=2e-102 Score=714.21 Aligned_cols=281 Identities=67% Similarity=1.224 Sum_probs=273.5
Q ss_pred CCCCcccccchhhh------------------hccccCCcccccCCcceeEEecCCCCCcccchhhhhhhhcccCccccc
Q psy14139 5 KTSSTYNRQSWEDA------------------TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTC 66 (327)
Q Consensus 5 ~~~~~~~~~~~e~~------------------~k~~~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c 66 (327)
.+.+|||+++||++ ||++||+||||||||||+|||+||+++|||||+||||||++|||||||
T Consensus 4 ~~~~~~n~~~wEd~dfPiiCe~CLGdnpyvRMtK~~~gkECKICtrPfT~Frw~pgr~~r~kKTeICqtCaklKNvCQ~C 83 (377)
T KOG0153|consen 4 GPKRDYNRQNWEDADFPIICETCLGDNPYVRMTKEPYGKECKICTRPFTIFRWCPGRGARFKKTEICQTCAKLKNVCQTC 83 (377)
T ss_pred ccccccccccccccCccHHHHHhcCCCceeeeeccccCCccceecCcceEEEeccccccccccchHHHHHHHHHhHHHHh
Confidence 34569999999997 999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcHHHHHHHhhhcCCCCCccccHHHHHHHHHHhhhcCCCCCCccccCCCcChHHHHHHHhhcCCCccCCCccc
Q psy14139 67 LLDLEYGLPIQVRDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPYYKRNRPHI 146 (327)
Q Consensus 67 ~ldl~~~lp~~~rd~~l~~~~~~p~s~~n~ey~~~~~e~~l~~~~~~~~~~~~g~~~~~~~~l~kl~~~~p~y~r~~~~~ 146 (327)
||||+|||||||||++|++++.+|+|++|+|||+|++++++.++++++..++.++...++++|++|+++.|||+||++||
T Consensus 84 mLDle~glPiqvRD~~l~l~dn~p~~dvnre~f~qn~~r~l~~G~~~q~~~~~~~a~~~~d~l~~l~rt~p~ykrn~p~I 163 (377)
T KOG0153|consen 84 MLDLEYGLPIQVRDAALSLVDNVPTSDVNREYFAQNHDRKLSNGDDTQPASAKARALAPNDMLRKLQRTTPYYKRNRPHI 163 (377)
T ss_pred hhhhccCCcceehhhhhhhhhccchhhhhHHHHHHHHHhhcccCCCcccccchhcccchHHHHHHHhccCccccCCCCcc
Confidence 99999999999999999999999999999999999999999999988777777888899999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCcccCccccCCCCCChhHHHHHHhhcCCCCCCCCCCCCccEEEEcCCCCCCC
Q psy14139 147 CSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLGDKLT 226 (327)
Q Consensus 147 C~ff~kG~C~rG~~Cpy~H~~p~~~~~~l~~qni~dr~~G~~~p~~~k~~~~~~~~p~~~~p~d~~~~tLfVgnLp~~it 226 (327)
||||++|+|+||++|+|+|++| ++++++.|||+|||+|.++|++.|++.++..++.++||+|.++++||||+|.+.++
T Consensus 164 csf~v~geckRG~ec~yrhEkp--~d~~L~~qni~dryyg~ndPva~kil~ra~~~~~lepPeD~~I~tLyIg~l~d~v~ 241 (377)
T KOG0153|consen 164 CSFFVKGECKRGAECPYRHEKP--PDDPLSLQNIKDRYYGLNDPVALKILNRAGSAGTLEPPEDTSIKTLYIGGLNDEVL 241 (377)
T ss_pred ccceeeccccccccccccccCC--CCcchhhcccccccccccChHHHHHHhhcccccccCCCcccceeEEEecccccchh
Confidence 9999999999999999999999 67889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 227 EQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 227 e~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
|.+|+++|.+||+|++|++...++||||+|.++++||.|++..++.+.|+|++|+|.|+++
T Consensus 242 e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 242 EQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred HHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999
No 2
>KOG0145|consensus
Probab=99.82 E-value=1.5e-21 Score=174.38 Aligned_cols=191 Identities=23% Similarity=0.387 Sum_probs=147.2
Q ss_pred CCCCccccHHHHHHHH-HHhhhcCCCCCCccccCCCcChHHHHHHHhhcCCCccCCCccccccccccccCCCCCCCCCCC
Q psy14139 88 DIPKSDVNKEYYIQNM-DHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPYYKRNRPHICSFWVKGECRRGEECPYRHE 166 (327)
Q Consensus 88 ~~p~s~~n~ey~~~~~-e~~l~~~~~~~~~~~~g~~~~~~~~l~kl~~~~p~y~r~~~~~C~ff~kG~C~rG~~Cpy~H~ 166 (327)
++.++++.++|.+|+| ++++.. ||+++|++|+++.+++|++..+-+|+ |+ +..
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rS-----LF~SiGeiEScKLvRDKitGqSLGYG---------FV------------NYv 91 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRS-----LFGSIGEIESCKLVRDKITGQSLGYG---------FV------------NYV 91 (360)
T ss_pred CcccceeeeeecccccCHHHHHH-----Hhhcccceeeeeeeeccccccccccc---------ee------------eec
Confidence 4567888999999999 788876 79999999999999999999999998 76 345
Q ss_pred CCCCCCCCCcccCccccCCCCCChhHHHHHHhhcCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEe
Q psy14139 167 KPTDPDDPLADQNIKDRYYGVNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTIL 246 (327)
Q Consensus 167 ~p~~~~~~l~~qni~dr~~G~~~p~~~k~~~~~~~~p~~~~p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~ 246 (327)
.|.|++.+++..| |. .++.|..+.....|+.+...| .+|||++||..++..+|+.+|++||.|..-+|+
T Consensus 92 ~p~DAe~AintlN------GL--rLQ~KTIKVSyARPSs~~Ik~---aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL 160 (360)
T KOG0145|consen 92 RPKDAEKAINTLN------GL--RLQNKTIKVSYARPSSDSIKD---ANLYVSGLPKTMTQKELEQIFSPFGRIITSRIL 160 (360)
T ss_pred ChHHHHHHHhhhc------ce--eeccceEEEEeccCChhhhcc---cceEEecCCccchHHHHHHHHHHhhhhhhhhhh
Confidence 6666665554443 11 245677788888887654434 799999999999999999999999999888887
Q ss_pred cC------CCeEEEEeCCHHHHHHHHHHhcCCeEECC--eeEEEEeccCCCCCCCCcccccccccCCCCCCCCCCCCC
Q psy14139 247 SK------QQCAFIQYTSRPAAEAAVEHSFNKVILGG--RRLNIKWGRAQANRGEDTAELKVRLEPVPGLPGALPPPP 316 (327)
Q Consensus 247 ~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G--~~L~V~~ak~~~~~~~~~~~~~~~~~pv~Glp~~~p~pp 316 (327)
.+ +|.+||.|+.+.+|+.|+.. +||..-.| .+|.|+|+............+.....|..+.+|++..++
T Consensus 161 ~dqvtg~srGVgFiRFDKr~EAe~AIk~-lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~ 237 (360)
T KOG0145|consen 161 VDQVTGLSRGVGFIRFDKRIEAEEAIKG-LNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQA 237 (360)
T ss_pred hhcccceecceeEEEecchhHHHHHHHh-ccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchh
Confidence 64 89999999999999999998 79988888 689999998765443322222222233444445544443
No 3
>KOG0148|consensus
Probab=99.63 E-value=2.5e-16 Score=141.78 Aligned_cols=81 Identities=31% Similarity=0.621 Sum_probs=76.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCC
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~ 289 (327)
.++++++||||++..++|++||+.|++||.|.+|+|..++|||||.|++.|+|.+||.+ .|+..+.|..+++.|++...
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~-mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQ-MNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHH-hcCceeCceEEEEeccccCC
Confidence 45679999999999999999999999999999999999999999999999999999998 59999999999999999765
Q ss_pred CC
Q psy14139 290 NR 291 (327)
Q Consensus 290 ~~ 291 (327)
..
T Consensus 240 ~~ 241 (321)
T KOG0148|consen 240 DG 241 (321)
T ss_pred CC
Confidence 43
No 4
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=1.9e-14 Score=121.88 Aligned_cols=79 Identities=23% Similarity=0.463 Sum_probs=72.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+|||.+++|++|+++|++||.|.++.|+.+ ++||||+|.+.++|+.|++. +++..|+|+.|+|.|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~-lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE-MDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH-cCCCEECCEEEEEEeC
Confidence 3479999999999999999999999999999999853 79999999999999999997 6999999999999999
Q ss_pred cCCCCC
Q psy14139 286 RAQANR 291 (327)
Q Consensus 286 k~~~~~ 291 (327)
+++...
T Consensus 112 ~~~~~~ 117 (144)
T PLN03134 112 NDRPSA 117 (144)
T ss_pred CcCCCC
Confidence 876543
No 5
>KOG0144|consensus
Probab=99.56 E-value=2.2e-16 Score=149.91 Aligned_cols=176 Identities=22% Similarity=0.354 Sum_probs=125.9
Q ss_pred CCCCccccHHHHHHHHHHhhhcCCCCCCccccCCCcChHHHHHHHhhcCCCccCCCccccccccccccCCCCCCCCCCCC
Q psy14139 88 DIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPYYKRNRPHICSFWVKGECRRGEECPYRHEK 167 (327)
Q Consensus 88 ~~p~s~~n~ey~~~~~e~~l~~~~~~~~~~~~g~~~~~~~~l~kl~~~~p~y~r~~~~~C~ff~kG~C~rG~~Cpy~H~~ 167 (327)
+.|++++. ..|+..+.|...+.|...+|+.||.+.++..+.+|..+.+-++ | |++. .|.+
T Consensus 28 d~~d~~~v-KlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gc-------C--Fv~~----------~trk 87 (510)
T KOG0144|consen 28 DNPDGSAV-KLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGC-------C--FVKY----------YTRK 87 (510)
T ss_pred CCCCchhh-hheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccce-------E--EEEe----------ccHH
Confidence 34444444 3567778777777777778999999999999999988854443 2 4422 2222
Q ss_pred CCC-CCCCCcccCccccCCCCCChhHHHHHHhhcCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEe
Q psy14139 168 PTD-PDDPLADQNIKDRYYGVNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTIL 246 (327)
Q Consensus 168 p~~-~~~~l~~qni~dr~~G~~~p~~~k~~~~~~~~p~~~~p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~ 246 (327)
..+ +-.++.++ --+.|...|+..|........- ....+||||-|+...+|.+|+++|++||.|+++.|+
T Consensus 88 ~a~~a~~Alhn~---ktlpG~~~pvqvk~Ad~E~er~-------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~il 157 (510)
T KOG0144|consen 88 EADEAINALHNQ---KTLPGMHHPVQVKYADGERERI-------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYIL 157 (510)
T ss_pred HHHHHHHHhhcc---cccCCCCcceeecccchhhhcc-------ccchhhhhhhccccccHHHHHHHHHhhCccchhhhe
Confidence 111 11122222 2345666777665543221110 234799999999999999999999999999999999
Q ss_pred cC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECC--eeEEEEeccCCCCCCC
Q psy14139 247 SK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGG--RRLNIKWGRAQANRGE 293 (327)
Q Consensus 247 ~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G--~~L~V~~ak~~~~~~~ 293 (327)
++ ||||||+|.+++.|..|+++|.+-..+.| .+|.|+|+++++.+..
T Consensus 158 rd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 158 RDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred ecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 84 89999999999999999999544467887 6999999999887644
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.51 E-value=3e-15 Score=143.85 Aligned_cols=78 Identities=29% Similarity=0.524 Sum_probs=70.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECC--eeEEEE
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGG--RRLNIK 283 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G--~~L~V~ 283 (327)
..++|||+|||.+++|++|+++|++||+|.+++|+.+ +++|||+|.++++|++|++. +++..+.| ++|+|+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~-lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA-LNNVIPEGGSQPLTVR 270 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH-hCCCccCCCceeEEEE
Confidence 4578999999999999999999999999999999875 48999999999999999998 79988876 799999
Q ss_pred eccCCCC
Q psy14139 284 WGRAQAN 290 (327)
Q Consensus 284 ~ak~~~~ 290 (327)
|++....
T Consensus 271 ~a~~~~~ 277 (346)
T TIGR01659 271 LAEEHGK 277 (346)
T ss_pred ECCcccc
Confidence 9987544
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.45 E-value=3.9e-13 Score=98.25 Aligned_cols=65 Identities=42% Similarity=0.760 Sum_probs=61.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 216 LfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
|||+|||.++++++|+++|++||.|..+.+..+ +++|||+|.+.++|+.|++. ++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~-l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEE-LNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHH-HTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHH-cCCCEECccCcC
Confidence 799999999999999999999999999999884 79999999999999999998 699999999885
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.45 E-value=6.3e-13 Score=127.58 Aligned_cols=76 Identities=26% Similarity=0.400 Sum_probs=71.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
.+|||+|||.++++++|+++|++||.|.+++|+.+ +|||||+|.+.++|..|+.+ +||..++|+.|+|.|..+
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~-lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILS-LNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHH-hCCCEECCeEEEEEEccC
Confidence 47999999999999999999999999999999864 79999999999999999998 799999999999999987
Q ss_pred CCC
Q psy14139 288 QAN 290 (327)
Q Consensus 288 ~~~ 290 (327)
+..
T Consensus 349 ~~~ 351 (352)
T TIGR01661 349 KAY 351 (352)
T ss_pred CCC
Confidence 754
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.44 E-value=6.4e-13 Score=127.53 Aligned_cols=77 Identities=26% Similarity=0.484 Sum_probs=71.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
.++|||+|||.+++|++|+++|++||+|.+|+|+.+ +|||||+|.+.++|++|++. ++|..+.|+.|+|.|++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~-l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNS-LNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhh-cccEEECCeeEEEEeec
Confidence 479999999999999999999999999999999864 58999999999999999997 79999999999999998
Q ss_pred CCCC
Q psy14139 287 AQAN 290 (327)
Q Consensus 287 ~~~~ 290 (327)
+...
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 7654
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.44 E-value=5.6e-13 Score=128.19 Aligned_cols=95 Identities=22% Similarity=0.395 Sum_probs=80.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
.+...++|||++||.+++|++|+++|+.||+|++|+|+.+ ++||||+|.+.++|++|++. +++..+.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~-LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKN-LNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHH-cCCCccCCceeee
Confidence 3456789999999999999999999999999999999764 58999999999999999997 7999999999999
Q ss_pred EeccCCCCCCCCcccccccccCCCCCCC
Q psy14139 283 KWGRAQANRGEDTAELKVRLEPVPGLPG 310 (327)
Q Consensus 283 ~~ak~~~~~~~~~~~~~~~~~pv~Glp~ 310 (327)
.|+++..... ....+| |.+||.
T Consensus 182 ~~a~p~~~~~----~~~~lf--V~nLp~ 203 (346)
T TIGR01659 182 SYARPGGESI----KDTNLY--VTNLPR 203 (346)
T ss_pred eccccccccc----ccceeE--EeCCCC
Confidence 9998754322 122345 777763
No 11
>KOG0122|consensus
Probab=99.37 E-value=3.8e-12 Score=113.54 Aligned_cols=77 Identities=27% Similarity=0.472 Sum_probs=72.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
.+..+|-|.||+.+++|++|+++|.+||.|..+.+..+ +|||||+|.+|+.|.+|++. |||.-++.-.|+|.|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~-LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIAD-LNGYGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHH-ccCcccceEEEEEEe
Confidence 35678999999999999999999999999999999875 79999999999999999997 899999999999999
Q ss_pred ccCC
Q psy14139 285 GRAQ 288 (327)
Q Consensus 285 ak~~ 288 (327)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9986
No 12
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.36 E-value=3.9e-12 Score=116.12 Aligned_cols=74 Identities=24% Similarity=0.363 Sum_probs=68.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK---QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
.++|||+||+..++|++|+++|+.||+|.+|.|..+ ++||||+|.+.++|+.|+. ++|..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All--LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL--LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH--hcCCeeCCceEEEEeccCC
Confidence 479999999999999999999999999999999875 6999999999999999995 7999999999999997744
No 13
>KOG0149|consensus
Probab=99.35 E-value=5.5e-12 Score=112.10 Aligned_cols=78 Identities=28% Similarity=0.470 Sum_probs=70.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
-.|...++||||||++++..++|+++|++||+|.+..|+.+ +|++||+|.+.++|++|.+. ..-+|+||+-+
T Consensus 7 ~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d--p~piIdGR~aN 84 (247)
T KOG0149|consen 7 FGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD--PNPIIDGRKAN 84 (247)
T ss_pred CCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC--CCCcccccccc
Confidence 36778899999999999999999999999999999988864 79999999999999999985 66799999998
Q ss_pred EEeccC
Q psy14139 282 IKWGRA 287 (327)
Q Consensus 282 V~~ak~ 287 (327)
+.+|.-
T Consensus 85 cnlA~l 90 (247)
T KOG0149|consen 85 CNLASL 90 (247)
T ss_pred cchhhh
Confidence 888754
No 14
>KOG0145|consensus
Probab=99.34 E-value=3.8e-12 Score=114.47 Aligned_cols=98 Identities=27% Similarity=0.485 Sum_probs=86.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCC------CeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQ------QCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~k------g~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
.+.+.++|.|.-||..+++++++.+|+..|+|+++++++++ ||+||.|.+.++|++|+.. +||+.+..+.|+|
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~Aint-lNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINT-LNGLRLQNKTIKV 115 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhh-hcceeeccceEEE
Confidence 45667899999999999999999999999999999999863 8999999999999999997 8999999999999
Q ss_pred EeccCCCCCCCCcccccccccCCCCCCCCCC
Q psy14139 283 KWGRAQANRGEDTAELKVRLEPVPGLPGALP 313 (327)
Q Consensus 283 ~~ak~~~~~~~~~~~~~~~~~pv~Glp~~~p 313 (327)
.+++|....-++. ..| |+|||..+.
T Consensus 116 SyARPSs~~Ik~a----NLY--vSGlPktMt 140 (360)
T KOG0145|consen 116 SYARPSSDSIKDA----NLY--VSGLPKTMT 140 (360)
T ss_pred EeccCChhhhccc----ceE--EecCCccch
Confidence 9999987665432 356 889875543
No 15
>KOG0107|consensus
Probab=99.32 E-value=5.4e-12 Score=107.51 Aligned_cols=78 Identities=28% Similarity=0.515 Sum_probs=72.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCCC
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~~ 291 (327)
.+.||||||+..+++.||...|..||.|.+|.|..+ .|||||+|++..+|+.|+.. |+|..|.|..|+|+++.-....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~-LDG~~~cG~r~rVE~S~G~~r~ 88 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRY-LDGKDICGSRIRVELSTGRPRG 88 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhh-cCCccccCceEEEEeecCCccc
Confidence 589999999999999999999999999999999875 79999999999999999997 8999999999999998766553
No 16
>KOG0105|consensus
Probab=99.30 E-value=6.3e-12 Score=107.97 Aligned_cols=76 Identities=28% Similarity=0.559 Sum_probs=69.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK---QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
..++|||||||.++.|.+|.++|.+||.|..|.+... -.||||+|++..+|+.|+.. -+|..++|..|+|++++.-
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiyg-RdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYG-RDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhc-ccccccCcceEEEEeccCC
Confidence 4579999999999999999999999999999988764 47999999999999999997 6999999999999998754
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.28 E-value=2.1e-11 Score=89.72 Aligned_cols=65 Identities=34% Similarity=0.649 Sum_probs=59.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 216 LfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
|||+|||.++++++|+++|+.||.|..+.+..+ +++|||+|.+.++|++|++. +++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~-~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALEL-LNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHH-HTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHH-CCCcEECCEEcC
Confidence 799999999999999999999999999999886 59999999999999999996 688999999875
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.27 E-value=2.2e-11 Score=124.38 Aligned_cols=91 Identities=29% Similarity=0.496 Sum_probs=75.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
.+|||||||.+++|++|+++|++||.|.+|+|..+ +|||||+|.+.++|++|++. +++..+.|+.|+|.|+..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~-ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALET-MNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH-hCCCEECCeeEEeecccc
Confidence 38999999999999999999999999999999864 57999999999999999997 799999999999999865
Q ss_pred CCCCCCCcccccccccCCCCCC
Q psy14139 288 QANRGEDTAELKVRLEPVPGLP 309 (327)
Q Consensus 288 ~~~~~~~~~~~~~~~~pv~Glp 309 (327)
....... ....+| |.+||
T Consensus 80 ~~~~~~~--~~~~vf--V~nLp 97 (562)
T TIGR01628 80 DPSLRRS--GVGNIF--VKNLD 97 (562)
T ss_pred ccccccc--CCCceE--EcCCC
Confidence 4332211 122344 66775
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.26 E-value=3e-11 Score=122.56 Aligned_cols=77 Identities=25% Similarity=0.479 Sum_probs=71.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhc--CCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCC
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQF--GEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~f--G~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~ 289 (327)
..++|||+||+.+++|++|+++|++| |+|++|.++ ++||||+|.++++|++|++. +|+..|+|+.|+|.|+++..
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~-lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDE-LNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHH-hCCCEECCEEEEEEEccCCC
Confidence 45789999999999999999999999 999999877 67999999999999999998 79999999999999999865
Q ss_pred CC
Q psy14139 290 NR 291 (327)
Q Consensus 290 ~~ 291 (327)
..
T Consensus 309 ~~ 310 (578)
T TIGR01648 309 KK 310 (578)
T ss_pred cc
Confidence 43
No 20
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=4.4e-11 Score=86.29 Aligned_cols=68 Identities=44% Similarity=0.720 Sum_probs=63.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCC----CeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQ----QCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 215 tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~k----g~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
+|||+|||..+++++|+++|.+||.|..+.+..+. ++|||+|.+.++|+.|++. +++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~-~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA-LNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH-hCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 9999999999999999997 79999999998873
No 21
>KOG0125|consensus
Probab=99.26 E-value=1.7e-11 Score=113.41 Aligned_cols=75 Identities=23% Similarity=0.425 Sum_probs=70.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec----CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS----KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~----~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
-+.|+|+|||....|-||+.+|.+||.|.+|.|+- +|||+||+|++.++|++|-++ |+|.++.||+|.|..+.++
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~-LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAE-LHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHH-hhcceeeceEEEEeccchh
Confidence 47999999999999999999999999999999986 389999999999999999998 7999999999999988765
No 22
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.25 E-value=3.2e-11 Score=121.20 Aligned_cols=77 Identities=21% Similarity=0.369 Sum_probs=71.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHh-cCCeEECCeeEEEEeccCCC
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS-FNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~-l~g~~i~G~~L~V~~ak~~~ 289 (327)
.++|||+|||.+++|++|+++|++||.|.++.++.++++|||+|.+.++|+.|++.+ +++..+.|++|+|.|+..+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 369999999999999999999999999999999999999999999999999999864 47899999999999997653
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.24 E-value=3.9e-11 Score=122.08 Aligned_cols=75 Identities=31% Similarity=0.563 Sum_probs=68.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++||||||+.+++|++|+++|++||.|.+|+|+. ++|||||+|.+.++|++|++. +||..++|+.|+|.+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~-lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQ-MNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHh-cCCeEEecceeeeccc
Confidence 457999999999999999999999999999999975 389999999999999999998 6999999999999865
Q ss_pred cC
Q psy14139 286 RA 287 (327)
Q Consensus 286 k~ 287 (327)
..
T Consensus 185 ~~ 186 (612)
T TIGR01645 185 SN 186 (612)
T ss_pred cc
Confidence 43
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.24 E-value=3.7e-11 Score=122.22 Aligned_cols=78 Identities=24% Similarity=0.445 Sum_probs=71.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+||+.++++++|+++|+.||.|.+++|..+ +|||||+|.+.++|.+|++. +|+..++|+.|+|.++
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a-mNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS-MNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH-hCCCeeCCeEEEEEec
Confidence 4579999999999999999999999999999999863 79999999999999999998 6999999999999999
Q ss_pred cCCCC
Q psy14139 286 RAQAN 290 (327)
Q Consensus 286 k~~~~ 290 (327)
.+.+.
T Consensus 282 i~pP~ 286 (612)
T TIGR01645 282 VTPPD 286 (612)
T ss_pred CCCcc
Confidence 86543
No 25
>KOG0121|consensus
Probab=99.23 E-value=1.7e-11 Score=99.46 Aligned_cols=75 Identities=31% Similarity=0.497 Sum_probs=68.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
.+.+|||||||+..++|+.|.++|+..|+|+.|.|-.+ -||+||+|.++++|+.|+.- ++|..++.++|+|.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alry-isgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRY-ISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHH-hccCcccccceeeec
Confidence 34579999999999999999999999999999998765 48999999999999999996 899999999999998
Q ss_pred cc
Q psy14139 285 GR 286 (327)
Q Consensus 285 ak 286 (327)
.-
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 64
No 26
>KOG0117|consensus
Probab=99.23 E-value=5.2e-11 Score=114.07 Aligned_cols=80 Identities=25% Similarity=0.456 Sum_probs=73.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQAN 290 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~ 290 (327)
...+-|||.||+.++||+.|++.|++||.|+.|+.+ +.||||.|.+|++|-+|++. +||..|+|..|.|.+|+|..+
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~--rDYaFVHf~eR~davkAm~~-~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP--RDYAFVHFAEREDAVKAMKE-TNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecc--cceeEEeecchHHHHHHHHH-hcCceecCceEEEEecCChhh
Confidence 446789999999999999999999999999999888 55999999999999999998 699999999999999999876
Q ss_pred CCC
Q psy14139 291 RGE 293 (327)
Q Consensus 291 ~~~ 293 (327)
+..
T Consensus 334 ~k~ 336 (506)
T KOG0117|consen 334 KKK 336 (506)
T ss_pred hcc
Confidence 544
No 27
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.22 E-value=6.4e-11 Score=83.69 Aligned_cols=55 Identities=31% Similarity=0.620 Sum_probs=51.2
Q ss_pred HHHHHhhcCCeEEEEEecCC-CeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 230 LRDHFYQFGEIRSVTILSKQ-QCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 230 Lr~~F~~fG~I~~v~i~~~k-g~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
|+++|++||+|.++.+..++ ++|||+|.+.++|+.|++. ++|..++|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~-l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQ-LNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHH-HTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHH-hCCCEECCcEEEEEEC
Confidence 67899999999999999987 9999999999999999998 7999999999999986
No 28
>KOG0144|consensus
Probab=99.21 E-value=2.8e-11 Score=115.45 Aligned_cols=84 Identities=25% Similarity=0.578 Sum_probs=76.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECC--eeE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGG--RRL 280 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G--~~L 280 (327)
.|.+.-+||||.+|..++|.||+++|++||.|.+|.|+++ +||+||.|.++++|.+|+.++.|.+.+.| .+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 4577789999999999999999999999999999999985 69999999999999999999888889988 789
Q ss_pred EEEeccCCCCCC
Q psy14139 281 NIKWGRAQANRG 292 (327)
Q Consensus 281 ~V~~ak~~~~~~ 292 (327)
.|++++....+.
T Consensus 110 qvk~Ad~E~er~ 121 (510)
T KOG0144|consen 110 QVKYADGERERI 121 (510)
T ss_pred eecccchhhhcc
Confidence 999998876653
No 29
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.21 E-value=8.4e-11 Score=105.94 Aligned_cols=72 Identities=29% Similarity=0.324 Sum_probs=66.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK---QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
...+|||+||++.++|++|+++|+.||+|.+|+|..+ +++|||+|.+.++|+.|+. |+|..|.+++|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll--LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL--LSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh--cCCCeeCCceEEEEeC
Confidence 4479999999999999999999999999999999985 5899999999999999995 8999999999988753
No 30
>PLN03213 repressor of silencing 3; Provisional
Probab=99.20 E-value=6e-11 Score=114.82 Aligned_cols=76 Identities=21% Similarity=0.410 Sum_probs=69.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCeEEEEeCCH--HHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK--QQCAFIQYTSR--PAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~--kg~aFV~F~~~--~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
....+||||||+.++++++|+.+|.+||.|.+|.|++. +|||||+|.+. .++.+|+.. |||..+.|+.|+|.-|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISa-LNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFST-YNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHH-hcCCeecCceeEEeecc
Confidence 34579999999999999999999999999999999974 89999999987 789999998 79999999999999987
Q ss_pred C
Q psy14139 287 A 287 (327)
Q Consensus 287 ~ 287 (327)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 4
No 31
>KOG0151|consensus
Probab=99.17 E-value=1.2e-10 Score=116.84 Aligned_cols=110 Identities=32% Similarity=0.541 Sum_probs=91.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec---------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCee
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS---------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRR 279 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~---------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~ 279 (327)
.|+..++|||+||++.++|+.|...|..||.|.+|+|+. .+.|+||.|.++.+|++|++. ++|.++.+..
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~-lqg~iv~~~e 248 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKE-LQGIIVMEYE 248 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHH-hcceeeeeee
Confidence 367889999999999999999999999999999999985 368999999999999999997 7999999999
Q ss_pred EEEEeccCCCCCCCCcccccccccCCCCCCCCCCCCC-CCCCCCCCC
Q psy14139 280 LNIKWGRAQANRGEDTAELKVRLEPVPGLPGALPPPP-KDFFNLSNP 325 (327)
Q Consensus 280 L~V~~ak~~~~~~~~~~~~~~~~~pv~Glp~~~p~pp-~~~~~~~pp 325 (327)
+++-|+++-.-.. ..++.|.+++...+|+|| +..||..|+
T Consensus 249 ~K~gWgk~V~ip~------~p~~ipp~~h~~~lp~p~s~Lpfnaqp~ 289 (877)
T KOG0151|consen 249 MKLGWGKAVPIPN------IPIYIPPPLHEATLPPPPSNLPFNAQPG 289 (877)
T ss_pred eeeccccccccCC------ccccCCChhhhccCCCCccCCcccCCCC
Confidence 9999998765332 234455666666777666 667777665
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.17 E-value=1.1e-10 Score=119.18 Aligned_cols=78 Identities=28% Similarity=0.511 Sum_probs=71.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
....+|||+||+.++++++|+++|++||.|.+++++.+ +|+|||+|.+.++|++|+.. ++|..++|++|.|.|+
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~-~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTE-MHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHH-hcCCeeCCceeEEEec
Confidence 34578999999999999999999999999999999864 69999999999999999998 6999999999999999
Q ss_pred cCCC
Q psy14139 286 RAQA 289 (327)
Q Consensus 286 k~~~ 289 (327)
..+.
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 8653
No 33
>KOG4207|consensus
Probab=99.17 E-value=5.6e-11 Score=103.81 Aligned_cols=80 Identities=30% Similarity=0.560 Sum_probs=72.9
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeE
Q psy14139 207 PPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRL 280 (327)
Q Consensus 207 ~p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L 280 (327)
||+-...++|-|-||...++-++|+.+|++||.|-+|.|..+ +|||||.|....+||.|+++ ++|.+|+|+.|
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~da-mDG~~ldgRel 85 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDA-MDGAVLDGREL 85 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHh-hcceeecccee
Confidence 444456789999999999999999999999999999999875 79999999999999999998 69999999999
Q ss_pred EEEeccC
Q psy14139 281 NIKWGRA 287 (327)
Q Consensus 281 ~V~~ak~ 287 (327)
+|++|+-
T Consensus 86 rVq~ary 92 (256)
T KOG4207|consen 86 RVQMARY 92 (256)
T ss_pred eehhhhc
Confidence 9988763
No 34
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.17 E-value=1.8e-10 Score=115.79 Aligned_cols=77 Identities=25% Similarity=0.355 Sum_probs=71.1
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEEecC-CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 211 KTITTLYVGNLGD-KLTEQDLRDHFYQFGEIRSVTILSK-QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 211 ~~~~tLfVgnLp~-~ite~~Lr~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
...++|||+||+. .+++++|+++|++||.|.+|+++.+ +++|||+|.+.++|+.|+.. ++|..|.|+.|+|.+++..
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~-lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTH-LNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHH-hCCCEECCceEEEEEcccc
Confidence 4567999999998 6999999999999999999999875 69999999999999999997 7999999999999998764
No 35
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.16 E-value=1.8e-10 Score=114.53 Aligned_cols=78 Identities=22% Similarity=0.392 Sum_probs=70.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
....++|||+|||..+++++|+++|++||.|.+|+|+.+ +|+|||+|.+.++|++|+. ++|..+.|++|.|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~--l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA--LTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH--hCCCEECCeeeEEe
Confidence 455789999999999999999999999999999999864 7999999999999999997 69999999999999
Q ss_pred eccCCC
Q psy14139 284 WGRAQA 289 (327)
Q Consensus 284 ~ak~~~ 289 (327)
++....
T Consensus 164 ~~~~~~ 169 (457)
T TIGR01622 164 SSQAEK 169 (457)
T ss_pred ecchhh
Confidence 876543
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.15 E-value=1.8e-10 Score=114.59 Aligned_cols=73 Identities=36% Similarity=0.600 Sum_probs=68.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
.++|||+|||..++|++|+++|++||.|.+|.+.. .+|||||+|.+.++|+.|++. ++|..|.|+.|+|.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~-l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEV-MNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh-cCCcEECCEEEEEEEcc
Confidence 68999999999999999999999999999999985 368999999999999999997 79999999999999976
No 37
>KOG0132|consensus
Probab=99.13 E-value=1.2e-10 Score=117.97 Aligned_cols=79 Identities=33% Similarity=0.661 Sum_probs=74.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCCCC
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRG 292 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~~~ 292 (327)
.+|||||+|+..++|.||..+|+.||+|.+|.++..++||||....|.+|++|+.+ ++...+.++.|+|.||....-+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqk-l~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQK-LSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHH-HhcccccceeeEEeeeccCCcch
Confidence 47999999999999999999999999999999999999999999999999999998 58899999999999998766554
No 38
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.12 E-value=2.7e-10 Score=115.70 Aligned_cols=74 Identities=23% Similarity=0.382 Sum_probs=66.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCeEEEEeCCHHHHHHHHHHhcCCeEEC-CeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS-----KQQCAFIQYTSRPAAEAAVEHSFNKVILG-GRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~-----~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~-G~~L~V~~a 285 (327)
..++|||+|||.+++|++|+++|++||.|.+++|+. +++||||+|.+.++|++|++. +++..+. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~-lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKL-LNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHH-cCCCeecCCcccccccc
Confidence 458999999999999999999999999999999975 479999999999999999997 6888774 788888776
Q ss_pred c
Q psy14139 286 R 286 (327)
Q Consensus 286 k 286 (327)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 4
No 39
>KOG0113|consensus
Probab=99.12 E-value=6.2e-10 Score=102.03 Aligned_cols=77 Identities=26% Similarity=0.501 Sum_probs=70.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
..-+||||+-|+.+++|.+|+..|+.||.|+.|+|+.+ +|||||+|.+..+...|.+. .+|+.|+|+.|.|.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~-adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKD-ADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHh-ccCceecCcEEEEEe
Confidence 45689999999999999999999999999999999985 79999999999999999998 799999999998887
Q ss_pred ccCC
Q psy14139 285 GRAQ 288 (327)
Q Consensus 285 ak~~ 288 (327)
-+.+
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 6643
No 40
>KOG0111|consensus
Probab=99.11 E-value=5.6e-11 Score=104.65 Aligned_cols=81 Identities=28% Similarity=0.527 Sum_probs=74.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++||||+|.++++|.-|...|-+||.|..|.+.. +++||||+|..+++|..|+.. +|+.++.|+.|+|.++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDN-MnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDN-MNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhc-CchhhhcceeEEEeec
Confidence 347999999999999999999999999999999976 489999999999999999998 5999999999999999
Q ss_pred cCCCCCCC
Q psy14139 286 RAQANRGE 293 (327)
Q Consensus 286 k~~~~~~~ 293 (327)
+|.+-+.+
T Consensus 88 kP~kikeg 95 (298)
T KOG0111|consen 88 KPEKIKEG 95 (298)
T ss_pred CCccccCC
Confidence 99775543
No 41
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.11 E-value=5.8e-10 Score=112.36 Aligned_cols=78 Identities=22% Similarity=0.465 Sum_probs=71.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+|||..+++++|+++|+.||.|..+.++. .+|||||+|.+.++|+.|++. ++|..+.|+.|.|.++
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~-l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAA-LNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH-cCCCEECCeEEEEEEC
Confidence 457999999999999999999999999999999875 379999999999999999997 7999999999999999
Q ss_pred cCCCC
Q psy14139 286 RAQAN 290 (327)
Q Consensus 286 k~~~~ 290 (327)
.....
T Consensus 373 ~~~~~ 377 (509)
T TIGR01642 373 CVGAN 377 (509)
T ss_pred ccCCC
Confidence 76543
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=7e-10 Score=80.34 Aligned_cols=69 Identities=42% Similarity=0.739 Sum_probs=64.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 215 tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
+|+|+|||..+++++|+++|..||.|..+.+..+ +++|||+|.+.++|..|+.. +++..++|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~-~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEA-LNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHH-hCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999875 68999999999999999997 799999999999875
No 43
>KOG0148|consensus
Probab=99.10 E-value=1.8e-10 Score=104.29 Aligned_cols=77 Identities=23% Similarity=0.586 Sum_probs=71.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
.-.+|||.|..+++-++|++.|.+||+|.+.+|+++ +||+||.|-++++||.|+.. +||.+|++|.|+..|+.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~-MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ-MNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHH-hCCeeeccceeeccccc
Confidence 468999999999999999999999999999999985 89999999999999999999 59999999999999997
Q ss_pred CCCC
Q psy14139 287 AQAN 290 (327)
Q Consensus 287 ~~~~ 290 (327)
.++.
T Consensus 141 RKp~ 144 (321)
T KOG0148|consen 141 RKPS 144 (321)
T ss_pred cCcc
Confidence 6654
No 44
>KOG0130|consensus
Probab=99.08 E-value=2.3e-10 Score=93.79 Aligned_cols=78 Identities=23% Similarity=0.479 Sum_probs=71.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..=-|||.++..+.+|++|.+.|..||+|+.|.+..+ +|||+|+|++.+.|++|+.+ +||..+-|+.|.|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~-~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDA-LNGAELLGQNVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHh-ccchhhhCCceeEEEE
Confidence 3457999999999999999999999999999999875 69999999999999999998 7999999999999999
Q ss_pred cCCCC
Q psy14139 286 RAQAN 290 (327)
Q Consensus 286 k~~~~ 290 (327)
..+.+
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 87655
No 45
>smart00360 RRM RNA recognition motif.
Probab=99.05 E-value=9.6e-10 Score=78.80 Aligned_cols=64 Identities=41% Similarity=0.677 Sum_probs=58.9
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 218 VGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 218 VgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
|+|||..+++++|+++|.+||.|..+.+..+ +++|||+|.+.++|..|+.. +++..++|+.|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~-~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA-LNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH-cCCCeeCCcEEEe
Confidence 5799999999999999999999999998875 46999999999999999996 7899999999887
No 46
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.05 E-value=1.3e-09 Score=109.77 Aligned_cols=77 Identities=22% Similarity=0.412 Sum_probs=67.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhc------------CCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQF------------GEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVIL 275 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~f------------G~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i 275 (327)
..+...++|||||||..+++++|+++|.++ +.|..+.+..+++||||+|.+.++|..|+. ++|..+
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~--l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA--LDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc--CCCeEe
Confidence 345667899999999999999999999975 467778888889999999999999999995 799999
Q ss_pred CCeeEEEEecc
Q psy14139 276 GGRRLNIKWGR 286 (327)
Q Consensus 276 ~G~~L~V~~ak 286 (327)
.|+.|+|.+..
T Consensus 248 ~g~~l~v~r~~ 258 (509)
T TIGR01642 248 SNVFLKIRRPH 258 (509)
T ss_pred eCceeEecCcc
Confidence 99999997544
No 47
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.02 E-value=1.4e-09 Score=97.84 Aligned_cols=74 Identities=36% Similarity=0.627 Sum_probs=69.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
..+|||+|||.++++++|+++|.+||.|..+.+..+ +|+|||.|.+.+.|..|+.. +++..+.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~-~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEE-LNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHH-cCCCeECCceeEeeccc
Confidence 589999999999999999999999999999988775 59999999999999999997 79999999999999965
Q ss_pred C
Q psy14139 287 A 287 (327)
Q Consensus 287 ~ 287 (327)
+
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 3
No 48
>KOG0114|consensus
Probab=99.02 E-value=1.5e-09 Score=85.15 Aligned_cols=76 Identities=26% Similarity=0.412 Sum_probs=69.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCC
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK---QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~ 289 (327)
++-|||.|||.++|.+++.++|.+||.|..|+|... +|-|||.|++..+|.+|+.+ ++|..+.++.|.|-+-.+..
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh-lsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH-LSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH-hcccccCCceEEEEecCHHH
Confidence 478999999999999999999999999999999764 79999999999999999999 79999999999998765543
No 49
>KOG0109|consensus
Probab=98.99 E-value=7.4e-10 Score=101.25 Aligned_cols=73 Identities=29% Similarity=0.565 Sum_probs=68.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~ 289 (327)
.+|||||||.+.++.+|+.+|++||+|.++.|+ +.+|||..++...|+.|+.. |++..|+|..|+|+-++++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairN-LhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRN-LHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhh-cccceecceEEEEEeccccC
Confidence 379999999999999999999999999999999 88999999999999999998 79999999999999888773
No 50
>KOG0147|consensus
Probab=98.93 E-value=7.5e-10 Score=108.70 Aligned_cols=170 Identities=24% Similarity=0.267 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhhhcCCCCCCccccCCCcChHHHHHHHhhcCCCccCCCccccccccccccCCCCCCCCCCCCCCCCCCCC
Q psy14139 96 KEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPYYKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPL 175 (327)
Q Consensus 96 ~ey~~~~~e~~l~~~~~~~~~~~~g~~~~~~~~l~kl~~~~p~y~r~~~~~C~ff~kG~C~rG~~Cpy~H~~p~~~~~~l 175 (327)
|--|..++-..+..-|.+..|+..|++-.+..|.++..+.+-+-. |+ +|. |+.-....-+|
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~---------Yv--ef~--------D~~sVp~aiaL 240 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIA---------YV--EFC--------DEQSVPLAIAL 240 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhccee---------EE--EEe--------cccchhhHhhh
Confidence 344555554444444555578888999889999998887644422 22 111 22222111123
Q ss_pred cccCccccCCCCCChhHHHHHHhhcCCCCCCC-CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------
Q psy14139 176 ADQNIKDRYYGVNDPVAEKLMARASTMPKLDP-PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------ 248 (327)
Q Consensus 176 ~~qni~dr~~G~~~p~~~k~~~~~~~~p~~~~-p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------ 248 (327)
+.|-+...+--.--+.++|... +...+.+.. ........||||||..+++|++|+.+|++||.|+.|.+..+
T Consensus 241 sGqrllg~pv~vq~sEaeknr~-a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~s 319 (549)
T KOG0147|consen 241 SGQRLLGVPVIVQLSEAEKNRA-ANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRS 319 (549)
T ss_pred cCCcccCceeEecccHHHHHHH-HhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccc
Confidence 3332211111111233444442 222222221 11122234999999999999999999999999999998764
Q ss_pred CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 249 QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 249 kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
+||+||+|.+.+.|.+|++. +||++|.|+.|+|....
T Consensus 320 kgfGfi~f~~~~~ar~a~e~-lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 320 KGFGFITFVNKEDARKALEQ-LNGFELAGRLIKVSVVT 356 (549)
T ss_pred cCcceEEEecHHHHHHHHHH-hccceecCceEEEEEee
Confidence 79999999999999999998 79999999999987654
No 51
>KOG0117|consensus
Probab=98.93 E-value=4.3e-09 Score=101.11 Aligned_cols=76 Identities=20% Similarity=0.390 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEE-CCeeEEEE
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVIL-GGRRLNIK 283 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i-~G~~L~V~ 283 (327)
...+.+|||.||.++.|++|..+|++.|+|-+++++.+ +|||||+|.+.+.|+.|++. ||+.+| .|+.|.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~-lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKE-LNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHH-hhCccccCCCEeEEE
Confidence 56689999999999999999999999999999999874 89999999999999999997 788877 57888887
Q ss_pred eccC
Q psy14139 284 WGRA 287 (327)
Q Consensus 284 ~ak~ 287 (327)
.+-.
T Consensus 160 ~Sva 163 (506)
T KOG0117|consen 160 VSVA 163 (506)
T ss_pred Eeee
Confidence 6643
No 52
>KOG0131|consensus
Probab=98.89 E-value=3.4e-09 Score=91.07 Aligned_cols=74 Identities=31% Similarity=0.469 Sum_probs=68.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
...|||||||+..++++-|.++|-+.|.|.++++.++ +||||++|.++++|+-|++- +|.+.+.|++|+|.-+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAiki-ln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKI-LNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHH-HHHHHhcCceeEEEec
Confidence 3479999999999999999999999999999999874 79999999999999999996 7999999999999876
Q ss_pred c
Q psy14139 286 R 286 (327)
Q Consensus 286 k 286 (327)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 53
>KOG0109|consensus
Probab=98.88 E-value=3.2e-10 Score=103.62 Aligned_cols=77 Identities=25% Similarity=0.494 Sum_probs=71.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQAN 290 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~ 290 (327)
+..++|+||||.+..+..+|+..|.+||.+.++.|+ ++++||.|.-.+.|..|+.. |++.++.|++++|..+.++-+
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~air~-l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIRG-LDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHHhc-ccccccccceeeeeeeccccc
Confidence 456899999999999999999999999999999999 88999999999999999998 799999999999999876543
No 54
>KOG0126|consensus
Probab=98.87 E-value=3.1e-10 Score=97.38 Aligned_cols=75 Identities=28% Similarity=0.487 Sum_probs=69.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
.+..-|||||||.+++|.||.-.|++||+|..|.++++ +||||+.|++..+.--|+.. +||+.|.|+.|+|.-
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN-~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDN-LNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEec-cCCceecceeEEeee
Confidence 45579999999999999999999999999999999985 79999999999999999998 799999999999975
Q ss_pred cc
Q psy14139 285 GR 286 (327)
Q Consensus 285 ak 286 (327)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 44
No 55
>KOG0108|consensus
Probab=98.85 E-value=5.4e-09 Score=102.70 Aligned_cols=77 Identities=23% Similarity=0.465 Sum_probs=72.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
.++||||+|.+++|++|.++|+..|.|.+++++.+ +||||++|.+.+.|+.|++. |||..+.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~-lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRN-LNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHh-cCCcccCCceEEeecccc
Confidence 79999999999999999999999999999999985 79999999999999999997 899999999999999987
Q ss_pred CCCC
Q psy14139 288 QANR 291 (327)
Q Consensus 288 ~~~~ 291 (327)
...+
T Consensus 98 ~~~~ 101 (435)
T KOG0108|consen 98 RKNA 101 (435)
T ss_pred cchh
Confidence 6653
No 56
>KOG4206|consensus
Probab=98.83 E-value=1.3e-08 Score=90.36 Aligned_cols=76 Identities=26% Similarity=0.545 Sum_probs=70.5
Q ss_pred cEEEEcCCCCCCCHHHHHH----HHhhcCCeEEEEEec---CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 214 TTLYVGNLGDKLTEQDLRD----HFYQFGEIRSVTILS---KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~----~F~~fG~I~~v~i~~---~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
.||||.||++.+..++|+. +|++||+|..|.... -+|-|||.|.+.++|-.|+.+ ++|..+-|++++|.+|+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~-l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRA-LQGFPFYGKPMRIQYAK 88 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHH-hcCCcccCchhheeccc
Confidence 4999999999999999988 999999999999875 389999999999999999998 79999999999999999
Q ss_pred CCCC
Q psy14139 287 AQAN 290 (327)
Q Consensus 287 ~~~~ 290 (327)
.+..
T Consensus 89 s~sd 92 (221)
T KOG4206|consen 89 SDSD 92 (221)
T ss_pred Cccc
Confidence 7764
No 57
>KOG0127|consensus
Probab=98.82 E-value=1.1e-08 Score=100.46 Aligned_cols=77 Identities=30% Similarity=0.498 Sum_probs=71.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
.-.|.|.|||..+.+.+|+.+|+.||.|..|.|... .|||||+|....+|+.|++. +|+..|+|++|-|.||-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~-~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEF-FNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHh-ccCceecCceeEEeeecc
Confidence 358999999999999999999999999999999864 59999999999999999997 799999999999999987
Q ss_pred CCC
Q psy14139 288 QAN 290 (327)
Q Consensus 288 ~~~ 290 (327)
+..
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 654
No 58
>KOG0146|consensus
Probab=98.82 E-value=4.3e-09 Score=95.32 Aligned_cols=80 Identities=30% Similarity=0.565 Sum_probs=70.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCeEEEEeCCHHHHHHHHHHhcCCeEECC--eeEEEEec
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS-----KQQCAFIQYTSRPAAEAAVEHSFNKVILGG--RRLNIKWG 285 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~-----~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G--~~L~V~~a 285 (327)
.++||||-|...-+|+|++.+|..||.|.++.+++ .+|||||.|.+..+|..||.++.....+.| ..|.|+++
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A 98 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA 98 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec
Confidence 37999999999999999999999999999999987 489999999999999999998544466777 68999999
Q ss_pred cCCCCCC
Q psy14139 286 RAQANRG 292 (327)
Q Consensus 286 k~~~~~~ 292 (327)
+..+.+.
T Consensus 99 DTdkER~ 105 (371)
T KOG0146|consen 99 DTDKERT 105 (371)
T ss_pred cchHHHH
Confidence 9877653
No 59
>KOG0124|consensus
Probab=98.75 E-value=6.6e-09 Score=97.61 Aligned_cols=69 Identities=33% Similarity=0.620 Sum_probs=65.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
+.+|||.+..++.|+.||..|..||.|++|.+.. +++||||+|+-.+.|.-|++. +||..++|+.|+|.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEq-MNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQ-MNGQMLGGRNIKVG 188 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHH-hccccccCcccccc
Confidence 7999999999999999999999999999999875 489999999999999999998 59999999999994
No 60
>KOG0127|consensus
Probab=98.70 E-value=6.4e-08 Score=95.16 Aligned_cols=79 Identities=29% Similarity=0.529 Sum_probs=69.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHh----cCC-eEECCee
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHS----FNK-VILGGRR 279 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~----l~g-~~i~G~~ 279 (327)
....++||.|||.+++|++|.++|++||+|..+.++.+ +|+|||.|.+..+|..++++. -.| +.+.|+.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 33489999999999999999999999999999988763 799999999999999999863 134 8899999
Q ss_pred EEEEeccCCC
Q psy14139 280 LNIKWGRAQA 289 (327)
Q Consensus 280 L~V~~ak~~~ 289 (327)
|+|..+-++.
T Consensus 370 Lkv~~Av~Rk 379 (678)
T KOG0127|consen 370 LKVTLAVTRK 379 (678)
T ss_pred EeeeeccchH
Confidence 9999987654
No 61
>smart00361 RRM_1 RNA recognition motif.
Probab=98.68 E-value=7.7e-08 Score=71.19 Aligned_cols=55 Identities=24% Similarity=0.504 Sum_probs=48.2
Q ss_pred HHHHHHHHh----hcCCeEEEE-E-ec-------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 227 EQDLRDHFY----QFGEIRSVT-I-LS-------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 227 e~~Lr~~F~----~fG~I~~v~-i-~~-------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
+++|+++|+ +||.|.++. | +. .+|+|||+|.+.++|++|+.. ++|..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~-l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVD-LNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHH-hCCCEECCEEEEe
Confidence 578899998 999999985 3 22 379999999999999999997 7999999999886
No 62
>KOG0146|consensus
Probab=98.66 E-value=2.4e-08 Score=90.48 Aligned_cols=81 Identities=22% Similarity=0.443 Sum_probs=73.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
+.++.++|||-.||.+..+.+|..+|-.||.|.+.++..+ +.|+||.|++..+|+.||.+ +||..|+-++|+|
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqA-MNGFQIGMKRLKV 359 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA-MNGFQIGMKRLKV 359 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHH-hcchhhhhhhhhh
Confidence 4567899999999999999999999999999999888653 78999999999999999998 5999999999999
Q ss_pred EeccCCCC
Q psy14139 283 KWGRAQAN 290 (327)
Q Consensus 283 ~~ak~~~~ 290 (327)
.+.+|+..
T Consensus 360 QLKRPkda 367 (371)
T KOG0146|consen 360 QLKRPKDA 367 (371)
T ss_pred hhcCcccc
Confidence 99888753
No 63
>KOG0131|consensus
Probab=98.65 E-value=4.7e-08 Score=84.15 Aligned_cols=80 Identities=31% Similarity=0.516 Sum_probs=70.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEE-EEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSV-TILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v-~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
.+|||+||.+++.|..|.+.|+.||.|.+. .+++ .++||||.|++.+++.+|+++ ++|..+.++++.|.++.
T Consensus 97 anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s-~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 97 ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS-MNGQYLCNRPITVSYAF 175 (203)
T ss_pred ccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH-hccchhcCCceEEEEEE
Confidence 799999999999999999999999998663 3333 368999999999999999997 69999999999999998
Q ss_pred CCCCCCCC
Q psy14139 287 AQANRGED 294 (327)
Q Consensus 287 ~~~~~~~~ 294 (327)
.+..++..
T Consensus 176 k~~~kg~~ 183 (203)
T KOG0131|consen 176 KKDTKGER 183 (203)
T ss_pred ecCCCccc
Confidence 87776643
No 64
>KOG0123|consensus
Probab=98.52 E-value=2.6e-07 Score=89.72 Aligned_cols=77 Identities=25% Similarity=0.533 Sum_probs=69.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCC
Q psy14139 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQAN 290 (327)
Q Consensus 215 tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~ 290 (327)
.+||-||+++++..+|.++|+.||+|.++++..+ +|+ ||+|++.++|.+|++. +||..+.|+.|.|.....+..
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~-~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEK-LNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHH-hcCcccCCCeeEEeeccchhh
Confidence 3999999999999999999999999999999874 788 9999999999999996 799999999999988777666
Q ss_pred CCC
Q psy14139 291 RGE 293 (327)
Q Consensus 291 ~~~ 293 (327)
+..
T Consensus 156 r~~ 158 (369)
T KOG0123|consen 156 REA 158 (369)
T ss_pred hcc
Confidence 543
No 65
>KOG1457|consensus
Probab=98.51 E-value=9.8e-07 Score=78.35 Aligned_cols=80 Identities=25% Similarity=0.419 Sum_probs=66.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec--C-----CCeEEEEeCCHHHHHHHHHHhcCCeEEC---CeeE
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS--K-----QQCAFIQYTSRPAAEAAVEHSFNKVILG---GRRL 280 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~--~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~---G~~L 280 (327)
..++||||.|||.++.-.+|..+|..|-.-+...+.. . +.+|||+|.+...|+.|+.+ |||+.++ +..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamna-LNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNA-LNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHH-hcCeeeccccCcee
Confidence 4578999999999999999999999985555444332 2 36899999999999999996 8999997 5789
Q ss_pred EEEeccCCCCC
Q psy14139 281 NIKWGRAQANR 291 (327)
Q Consensus 281 ~V~~ak~~~~~ 291 (327)
++.++++..++
T Consensus 111 hiElAKSNtK~ 121 (284)
T KOG1457|consen 111 HIELAKSNTKR 121 (284)
T ss_pred EeeehhcCccc
Confidence 99999976654
No 66
>KOG0415|consensus
Probab=98.50 E-value=3.2e-07 Score=86.14 Aligned_cols=78 Identities=26% Similarity=0.497 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
...-|||-.|.+-++.++|.-+|+.||.|.++.|+++ -.+|||+|.+.++.|+|.-. ++++.|+.++|.|.|+
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFK-MdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFK-MDNVLIDDRRIHVDFS 316 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhh-hcceeeccceEEeehh
Confidence 3458999999999999999999999999999999986 37999999999999999998 4889999999999998
Q ss_pred cCCCC
Q psy14139 286 RAQAN 290 (327)
Q Consensus 286 k~~~~ 290 (327)
.+-.+
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 76443
No 67
>KOG4205|consensus
Probab=98.47 E-value=1.7e-07 Score=88.60 Aligned_cols=94 Identities=24% Similarity=0.444 Sum_probs=79.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
+..+||||+|+++++++.|+++|++||+|..+.++.+ ++|+||+|++.+...+++.. .-+.|+|+.|.++-+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~--~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA--RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc--cccccCCccccceec
Confidence 4589999999999999999999999999999999874 79999999999888888763 667899999999999
Q ss_pred cCCCCCCCCcc--cccccccCCCCCC
Q psy14139 286 RAQANRGEDTA--ELKVRLEPVPGLP 309 (327)
Q Consensus 286 k~~~~~~~~~~--~~~~~~~pv~Glp 309 (327)
.++..+..... .+.+++ |.|+|
T Consensus 83 v~r~~~~~~~~~~~tkkiF--vGG~~ 106 (311)
T KOG4205|consen 83 VSREDQTKVGRHLRTKKIF--VGGLP 106 (311)
T ss_pred cCcccccccccccceeEEE--ecCcC
Confidence 88876655433 244556 78885
No 68
>KOG0123|consensus
Probab=98.44 E-value=5.9e-07 Score=87.29 Aligned_cols=73 Identities=27% Similarity=0.515 Sum_probs=67.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK---QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQAN 290 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~ 290 (327)
.+|||| ++++|..|.+.|+++|.+.++++.++ -|||||+|.+.++|++|+.+ +|...+.|++|+|.|+...+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~-~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDT-MNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHH-cCCcccCCcEEEeehhccCCc
Confidence 479999 89999999999999999999999875 58999999999999999998 699999999999999876553
No 69
>KOG0110|consensus
Probab=98.41 E-value=2.5e-07 Score=93.53 Aligned_cols=81 Identities=26% Similarity=0.498 Sum_probs=73.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
.+...+.|.|.|||...+-.+|+.+|..||.|.+|+|... +|||||.|-+..+|.+|+.+ |....+.|+.|.+
T Consensus 609 ~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a-l~STHlyGRrLVL 687 (725)
T KOG0110|consen 609 KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA-LGSTHLYGRRLVL 687 (725)
T ss_pred cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh-hcccceechhhhe
Confidence 3455789999999999999999999999999999999864 89999999999999999998 5799999999999
Q ss_pred EeccCCCC
Q psy14139 283 KWGRAQAN 290 (327)
Q Consensus 283 ~~ak~~~~ 290 (327)
.|++....
T Consensus 688 EwA~~d~~ 695 (725)
T KOG0110|consen 688 EWAKSDNT 695 (725)
T ss_pred ehhccchH
Confidence 99987654
No 70
>KOG4212|consensus
Probab=98.40 E-value=8.4e-07 Score=85.38 Aligned_cols=76 Identities=25% Similarity=0.426 Sum_probs=67.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHh-hcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFY-QFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~-~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
...+++||.|||.+....+|+++|. +-|+|+.|.++.+ ++||.|+|.+++.+++|++. +|...++|++|.|+-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~-lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEK-LNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHH-hhhccccCceEEEec
Confidence 3446799999999999999999996 4799999999874 89999999999999999998 799999999999986
Q ss_pred ccC
Q psy14139 285 GRA 287 (327)
Q Consensus 285 ak~ 287 (327)
...
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 543
No 71
>KOG0110|consensus
Probab=98.37 E-value=1.1e-06 Score=89.12 Aligned_cols=72 Identities=31% Similarity=0.495 Sum_probs=67.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC---------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK---------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~---------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
++|||.||+.+.+.+++..+|...|.|.++.|... .|||||+|.+.++|+.|++. ++|..|+|+.|.|++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~-lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKA-LQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHH-hcCceecCceEEEEe
Confidence 34999999999999999999999999999988764 29999999999999999998 699999999999999
Q ss_pred cc
Q psy14139 285 GR 286 (327)
Q Consensus 285 ak 286 (327)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 88
No 72
>KOG0116|consensus
Probab=98.36 E-value=8.6e-07 Score=86.85 Aligned_cols=76 Identities=28% Similarity=0.455 Sum_probs=67.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCC------CeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQ------QCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~k------g~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
..+|||.|||.++++.+|++.|.+||.|+...|.... .||||+|.+.++++.|+.+ +-..+++++|.|+--+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A--sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA--SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc--CccccCCeeEEEEecc
Confidence 4569999999999999999999999999998886633 8999999999999999996 6889999999999877
Q ss_pred CCCC
Q psy14139 287 AQAN 290 (327)
Q Consensus 287 ~~~~ 290 (327)
+...
T Consensus 366 ~~~~ 369 (419)
T KOG0116|consen 366 PGFR 369 (419)
T ss_pred cccc
Confidence 6443
No 73
>KOG4660|consensus
Probab=98.30 E-value=9.6e-07 Score=87.33 Aligned_cols=72 Identities=28% Similarity=0.427 Sum_probs=66.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec-CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS-KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~-~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
.+....+|+|-|||..+++++|+.+|+.||+|+.|+.-+ .++..||+|-+...|++|+++ +++..+.|+.|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~-l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKA-LNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHH-HHHHHhhhhhhc
Confidence 466678999999999999999999999999999998876 479999999999999999998 799999999888
No 74
>KOG4208|consensus
Probab=98.30 E-value=2.9e-06 Score=74.52 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=69.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhc-CCeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQF-GEIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRL 280 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~f-G~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L 280 (327)
|.+....-+||+.+|..+.|..+..+|.+| |.+..+++.+ ++|||||+|++.+-|+-|++.| |+..+.|+.|
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETM-NNYLl~e~lL 122 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETM-NNYLLMEHLL 122 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHh-hhhhhhhhee
Confidence 445556789999999999999999999998 6777778755 3799999999999999999984 9999999999
Q ss_pred EEEeccCC
Q psy14139 281 NIKWGRAQ 288 (327)
Q Consensus 281 ~V~~ak~~ 288 (327)
.+.+-.|.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99887776
No 75
>KOG0124|consensus
Probab=98.27 E-value=1.6e-06 Score=81.73 Aligned_cols=74 Identities=27% Similarity=0.483 Sum_probs=67.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
+....+||..+.++++|+||+..|+.||+|.++.+.+ ++||+||+|.+..+-..|+.. +|-+.++|+-|+|--
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias-MNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS-MNLFDLGGQYLRVGK 286 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh-cchhhcccceEeccc
Confidence 4557999999999999999999999999999999976 489999999999999999998 599999999999954
Q ss_pred c
Q psy14139 285 G 285 (327)
Q Consensus 285 a 285 (327)
+
T Consensus 287 ~ 287 (544)
T KOG0124|consen 287 C 287 (544)
T ss_pred c
Confidence 4
No 76
>KOG1190|consensus
Probab=98.22 E-value=1.3e-05 Score=76.89 Aligned_cols=78 Identities=27% Similarity=0.400 Sum_probs=70.7
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEEecC-CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCC
Q psy14139 213 ITTLYVGNLGD-KLTEQDLRDHFYQFGEIRSVTILSK-QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQAN 290 (327)
Q Consensus 213 ~~tLfVgnLp~-~ite~~Lr~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~ 290 (327)
+..|.|.||.. .+|.+.|..+|+-||.|..|+|+.+ +.-|.|.|.+...|+-|+++ |+|..+.|++|+|.++|...-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~h-L~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEH-LEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHH-hhcceecCceEEEeeccCccc
Confidence 57888999986 7999999999999999999999986 57899999999999999998 799999999999999987654
Q ss_pred C
Q psy14139 291 R 291 (327)
Q Consensus 291 ~ 291 (327)
.
T Consensus 376 q 376 (492)
T KOG1190|consen 376 Q 376 (492)
T ss_pred c
Confidence 4
No 77
>KOG0106|consensus
Probab=98.21 E-value=1.8e-06 Score=77.24 Aligned_cols=72 Identities=24% Similarity=0.481 Sum_probs=66.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
..+|||+||....+.+|..+|..||.|..+.+. .+|+||.|.+..+|+.|+.. +++.++.|..+.|.|++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~-l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHD-LDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--cccceeccCchhhhhcccch-hcCceecceeeeeeccccc
Confidence 468999999999999999999999999998877 78889999999999999997 7999999988999999864
No 78
>KOG4205|consensus
Probab=98.15 E-value=2.8e-06 Score=80.41 Aligned_cols=79 Identities=22% Similarity=0.406 Sum_probs=69.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
....+|||+||.+++|++++++|.+||.|..+.++.+ ++|+||.|.++++++++.. ..-+.|+|+.+.|+-|
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~--~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL--QKFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc--cceeeecCceeeEeec
Confidence 4569999999999999999999999999988877753 7999999999999999987 3778999999999999
Q ss_pred cCCCCCC
Q psy14139 286 RAQANRG 292 (327)
Q Consensus 286 k~~~~~~ 292 (327)
-|+....
T Consensus 174 ~pk~~~~ 180 (311)
T KOG4205|consen 174 IPKEVMQ 180 (311)
T ss_pred cchhhcc
Confidence 8876543
No 79
>KOG4212|consensus
Probab=98.13 E-value=5e-06 Score=80.18 Aligned_cols=75 Identities=24% Similarity=0.376 Sum_probs=66.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
..+..++|||.|||.+.|...|++-|..||.+....|+.+ +.-+.|.|.+.+.||+|+.. +++..++|+.|+|.+
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~-Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACAL-MNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHH-hccCcccCceeeeee
Confidence 3466789999999999999999999999999999888543 55569999999999999985 799999999999986
No 80
>KOG4661|consensus
Probab=98.12 E-value=5.6e-06 Score=82.03 Aligned_cols=76 Identities=18% Similarity=0.456 Sum_probs=69.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
.++|||++|+..+.-.+|+.+|++||+|.-.+|+.+ +.|+||++.+.++|.+.|+. |+...|.|+.|.|.-++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~h-LHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEH-LHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHH-hhhhhhcceeeeeeecc
Confidence 479999999999999999999999999999888864 68999999999999999998 79999999999998887
Q ss_pred CCC
Q psy14139 287 AQA 289 (327)
Q Consensus 287 ~~~ 289 (327)
...
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 543
No 81
>KOG0533|consensus
Probab=98.10 E-value=1.2e-05 Score=73.41 Aligned_cols=79 Identities=29% Similarity=0.457 Sum_probs=69.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
+...++|+|.||+..+.++||+++|..||.++.+-|..+ .|.|-|.|..+++|+.|++. ++++.++|+++++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~-~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKK-YNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHH-hcCcccCCceeeeEE
Confidence 444579999999999999999999999998888877764 58999999999999999998 799999999988877
Q ss_pred ccCCC
Q psy14139 285 GRAQA 289 (327)
Q Consensus 285 ak~~~ 289 (327)
..+..
T Consensus 159 i~~~~ 163 (243)
T KOG0533|consen 159 ISSPS 163 (243)
T ss_pred ecCcc
Confidence 65544
No 82
>KOG2202|consensus
Probab=98.07 E-value=1.8e-06 Score=78.18 Aligned_cols=117 Identities=26% Similarity=0.448 Sum_probs=76.4
Q ss_pred cccccc-cccccCCCCCCCCCCCCCCCCCCCCcccCccccCCCCCChhHHHHHHhhcCCCCCCCC-CCCCccEEEEcCCC
Q psy14139 145 HICSFW-VKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMARASTMPKLDPP-EDKTITTLYVGNLG 222 (327)
Q Consensus 145 ~~C~ff-~kG~C~rG~~Cpy~H~~p~~~~~~l~~qni~dr~~G~~~p~~~k~~~~~~~~p~~~~p-~d~~~~tLfVgnLp 222 (327)
.-|+|+ ..|.|..|+.|.-.|++|+-.. .+ +++.....|...++ .|. -...++
T Consensus 16 v~c~fy~k~gacR~gdrcsR~h~kpt~s~------t~--------------ll~nmyq~P~~~~~~~d~-----~~~~~~ 70 (260)
T KOG2202|consen 16 VNCSFYFKIGACRHGDRCSRLHEKPTFSQ------TV--------------LLKNMYQNPENSWERRDA-----QGQFLT 70 (260)
T ss_pred cccchHHhhcccccccHHHHhhcccccch------HH--------------HHHHHHhCCCCCchhhhh-----cccccc
Confidence 468888 6799999999999999887321 11 11112222322211 110 011111
Q ss_pred CCC-------CHHHHHHHHh-hcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 223 DKL-------TEQDLRDHFY-QFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 223 ~~i-------te~~Lr~~F~-~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
+.- .-++|...|+ +||+|++++|..+ .|-+||.|...++|++|++. ||+.+++|++|...+..-
T Consensus 71 de~~q~~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~-lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 71 DEELQRHEDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALED-LNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHH-HcCccccCCcceeeecCc
Confidence 110 0123333344 8999999987664 68899999999999999997 899999999999888653
No 83
>KOG4454|consensus
Probab=98.01 E-value=2.7e-06 Score=75.41 Aligned_cols=71 Identities=24% Similarity=0.214 Sum_probs=64.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
+||||+|+...++|+-|.++|-+-|.|..|.|... ..||||.|.++.+..-|++ ++||..+.++.++|++-
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~-L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQ-LENGDDLEEDEEQRTLR 84 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhh-hcccchhccchhhcccc
Confidence 79999999999999999999999999999988763 4699999999999999998 58999999988887764
No 84
>KOG1548|consensus
Probab=98.01 E-value=2.3e-05 Score=73.69 Aligned_cols=84 Identities=24% Similarity=0.343 Sum_probs=70.2
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEE--------EEEecC-----CCeEEEEeCCHHHHHHHHHHhcC
Q psy14139 205 LDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRS--------VTILSK-----QQCAFIQYTSRPAAEAAVEHSFN 271 (327)
Q Consensus 205 ~~~p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~--------v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~ 271 (327)
...++...++++||+|||.++|-+++.++|+++|-|.. |++-.+ +|=|.+.|-.+++.+-|++. |+
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~i-lD 204 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKI-LD 204 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHH-hC
Confidence 33345667789999999999999999999999998754 333332 68899999999999999995 89
Q ss_pred CeEECCeeEEEEeccCCC
Q psy14139 272 KVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 272 g~~i~G~~L~V~~ak~~~ 289 (327)
+..+.|+.|+|..|+-+.
T Consensus 205 e~~~rg~~~rVerAkfq~ 222 (382)
T KOG1548|consen 205 EDELRGKKLRVERAKFQM 222 (382)
T ss_pred cccccCcEEEEehhhhhh
Confidence 999999999999987544
No 85
>KOG2135|consensus
Probab=97.99 E-value=7.7e-06 Score=79.59 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=63.3
Q ss_pred CccEEEEcCCCCCCC-HHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCC
Q psy14139 212 TITTLYVGNLGDKLT-EQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQAN 290 (327)
Q Consensus 212 ~~~tLfVgnLp~~it-e~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~ 290 (327)
+.+.|-+.-.+..++ -.+|..+|.+||+|..|.+-.....|.|+|.++.+|-.|.. ..+..|+|+.|+|.|.++.+.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~--s~~avlnnr~iKl~whnps~~ 448 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA--SHGAVLNNRFIKLFWHNPSPV 448 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc--cccceecCceeEEEEecCCcc
Confidence 334555555555443 47899999999999999998888889999999999977775 599999999999999998664
Q ss_pred C
Q psy14139 291 R 291 (327)
Q Consensus 291 ~ 291 (327)
.
T Consensus 449 t 449 (526)
T KOG2135|consen 449 T 449 (526)
T ss_pred c
Confidence 3
No 86
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.86 E-value=3.6e-05 Score=53.87 Aligned_cols=52 Identities=29% Similarity=0.518 Sum_probs=45.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHH
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAV 266 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~ 266 (327)
+.|-|.|.+.+.. +++..+|.+||+|..+.+.....+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 5678889998776 455669999999999999888999999999999999984
No 87
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.70 E-value=0.00012 Score=58.64 Aligned_cols=68 Identities=24% Similarity=0.476 Sum_probs=43.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHh-cC---CeEECCeeEEE
Q psy14139 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS-FN---KVILGGRRLNI 282 (327)
Q Consensus 215 tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~-l~---g~~i~G~~L~V 282 (327)
-|.|.+++..++.++|++.|++||.|..|.+.....-|||.|.+.++|+.|++.+ .. ++.+.+..+.+
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 5788889999999999999999999999999998899999999999999999874 12 35555655444
No 88
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.68 E-value=0.0002 Score=54.51 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=46.6
Q ss_pred cEEEEcCCCCCCCHHHHH----HHHhhcC-CeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 214 TTLYVGNLGDKLTEQDLR----DHFYQFG-EIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr----~~F~~fG-~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
+.|||.|||.+..-..|+ .++..+| .|.+|. .+.|+|.|.+.+.|++|.+. ++|-.+-|..|.|.+..-
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KR-megEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKR-MEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHH-HTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHh-hcccccccceEEEEEcCC
Confidence 579999999988876654 5555665 666663 78999999999999999998 599999999999988643
No 89
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.65 E-value=0.00025 Score=56.22 Aligned_cols=72 Identities=24% Similarity=0.256 Sum_probs=54.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEE-------------EecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCe-
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVT-------------ILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGR- 278 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~-------------i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~- 278 (327)
.+.+.|.|.|+..+ ..|.++|++||+|.+.. +.....+-.|+|+++.+|.+|+.. ||..++|.
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~--NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK--NGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT--TTEEETTCE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh--CCeEEcCcE
Confidence 35788889999854 67778999999998875 455688999999999999999984 99999985
Q ss_pred eEEEEeccC
Q psy14139 279 RLNIKWGRA 287 (327)
Q Consensus 279 ~L~V~~ak~ 287 (327)
.+-|.|.++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 566888754
No 90
>KOG4209|consensus
Probab=97.58 E-value=0.0002 Score=65.34 Aligned_cols=77 Identities=21% Similarity=0.370 Sum_probs=68.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
+.+.+++||||+....+-+++..+|+.+|.|..+.|..+ +++|||.|.+.+.++.|+. +++..+.|+.+.|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~--l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK--LDGSEIPGPAIEVT 175 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh--cCCcccccccceee
Confidence 345579999999999888889999999999988877653 7899999999999999998 69999999999999
Q ss_pred eccCC
Q psy14139 284 WGRAQ 288 (327)
Q Consensus 284 ~ak~~ 288 (327)
|-+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87765
No 91
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.52 E-value=0.00057 Score=53.88 Aligned_cols=75 Identities=24% Similarity=0.277 Sum_probs=60.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhc--CCeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECC----eeEE
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQF--GEIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGG----RRLN 281 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~f--G~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G----~~L~ 281 (327)
|||=|.|||...+.++|.+.+... |...-+-+.. +.|||||.|.+.+.|.+..+. ++|..+.. +...
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~-f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKA-FNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHH-HcCCccccCCCCcEEE
Confidence 689999999999999999988753 5554444433 379999999999999999997 78887763 5678
Q ss_pred EEeccCCC
Q psy14139 282 IKWGRAQA 289 (327)
Q Consensus 282 V~~ak~~~ 289 (327)
|.||+-++
T Consensus 81 i~yAriQG 88 (97)
T PF04059_consen 81 ISYARIQG 88 (97)
T ss_pred EehhHhhC
Confidence 88887654
No 92
>KOG4206|consensus
Probab=97.50 E-value=0.00045 Score=61.72 Aligned_cols=76 Identities=18% Similarity=0.359 Sum_probs=66.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec-CCCeEEEEeCCHHHHHHHHHHhcCCeEEC-CeeEEEEecc
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS-KQQCAFIQYTSRPAAEAAVEHSFNKVILG-GRRLNIKWGR 286 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~-~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~-G~~L~V~~ak 286 (327)
.+....||+.|||.+.+.+.+..+|.+|+..+.|+++. ..+.|||+|.++..|..|..+ +++..+- ...++|.+++
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~-lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQA-LQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhh-hccceeccCceEEecccC
Confidence 45678999999999999999999999999999999998 579999999999999999988 6776665 6778887764
No 93
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.37 E-value=0.00037 Score=65.55 Aligned_cols=72 Identities=24% Similarity=0.536 Sum_probs=59.9
Q ss_pred cEEEEcCCCCCCCHHH----H--HHHHhhcCCeEEEEEecC-------CCe--EEEEeCCHHHHHHHHHHhcCCeEECCe
Q psy14139 214 TTLYVGNLGDKLTEQD----L--RDHFYQFGEIRSVTILSK-------QQC--AFIQYTSRPAAEAAVEHSFNKVILGGR 278 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~----L--r~~F~~fG~I~~v~i~~~-------kg~--aFV~F~~~~~Ae~A~~~~l~g~~i~G~ 278 (327)
.-+||-+|++.+..++ | .++|.+||.|..|.|... .+. .||+|.+.++|.+++.+ .+|..++|+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~-vDgs~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAE-VDGSLLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHH-hccccccCc
Confidence 3678999998766555 2 478999999999998763 233 39999999999999998 799999999
Q ss_pred eEEEEecc
Q psy14139 279 RLNIKWGR 286 (327)
Q Consensus 279 ~L~V~~ak 286 (327)
.|+..++.
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99999874
No 94
>KOG0106|consensus
Probab=97.30 E-value=0.00017 Score=64.61 Aligned_cols=72 Identities=32% Similarity=0.535 Sum_probs=63.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
..+...+.|-+++..+++.+|.++|.++|++....+ ..+++||+|.+.++|..|+.. +++..+.|+.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~-l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEK-LDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchh-ccchhhcCceeeecc
Confidence 345678999999999999999999999999955444 689999999999999999997 799999999999943
No 95
>KOG1457|consensus
Probab=97.29 E-value=0.0003 Score=62.84 Aligned_cols=64 Identities=23% Similarity=0.442 Sum_probs=53.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCeEEEEeCCHHHHHHHHHHhcCCeEE
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS--KQQCAFIQYTSRPAAEAAVEHSFNKVIL 275 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~--~kg~aFV~F~~~~~Ae~A~~~~l~g~~i 275 (327)
....||||.||..+++|++|+.+|+.|.....++|-. ....||+.|++.+.|..|+.+ ++|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~-lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNH-LQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHH-hhccee
Confidence 4457999999999999999999999997666665544 356799999999999999987 576554
No 96
>KOG1190|consensus
Probab=97.27 E-value=0.00027 Score=68.00 Aligned_cols=77 Identities=21% Similarity=0.345 Sum_probs=62.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCe-EEEEEec-CCCeEEEEeCCHHHHHHHHHHhcCCeEECC-eeEEEEeccC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEI-RSVTILS-KQQCAFIQYTSRPAAEAAVEHSFNKVILGG-RRLNIKWGRA 287 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I-~~v~i~~-~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G-~~L~V~~ak~ 287 (327)
+...+|...|+|.+++|++++.+|.+-|.. +..+... ++.+|++.+.+.++|-.|+.. ++...+++ ..|+|.|+++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~-~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALID-LHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccc-cccccCCCCceEEEEeecc
Confidence 445799999999999999999999998865 4444433 689999999999999999986 56666655 5899999876
Q ss_pred C
Q psy14139 288 Q 288 (327)
Q Consensus 288 ~ 288 (327)
.
T Consensus 491 ~ 491 (492)
T KOG1190|consen 491 T 491 (492)
T ss_pred c
Confidence 3
No 97
>KOG0112|consensus
Probab=97.22 E-value=0.00022 Score=74.38 Aligned_cols=85 Identities=35% Similarity=0.520 Sum_probs=73.8
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECC--eeEEE
Q psy14139 205 LDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGG--RRLNI 282 (327)
Q Consensus 205 ~~~p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G--~~L~V 282 (327)
+..+.....+.++|++|+.......|...|..||.|..|.+-+...||+|.|++...|..|+.. +-|.-++| ++|+|
T Consensus 447 lG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~-~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 447 LGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHD-MRGAPLGGPPRRLRV 525 (975)
T ss_pred ccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHH-HhcCcCCCCCccccc
Confidence 3333445568999999999999999999999999999999999999999999999999999998 58888887 78999
Q ss_pred EeccCCCC
Q psy14139 283 KWGRAQAN 290 (327)
Q Consensus 283 ~~ak~~~~ 290 (327)
.++.+...
T Consensus 526 dla~~~~~ 533 (975)
T KOG0112|consen 526 DLASPPGA 533 (975)
T ss_pred ccccCCCC
Confidence 99876543
No 98
>KOG4211|consensus
Probab=97.07 E-value=0.0029 Score=62.34 Aligned_cols=72 Identities=22% Similarity=0.343 Sum_probs=60.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
+..-|-+.+||++.|++||.++|+..+ |+++.+.+. .|-|||+|.+.+++++|++. +...+..+-|.|--+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk--dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK--DRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh--hHHHhCCceEEEEccC
Confidence 334566689999999999999999886 888777764 68999999999999999984 7788888888887663
No 99
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.05 E-value=0.00048 Score=40.81 Aligned_cols=24 Identities=29% Similarity=1.006 Sum_probs=21.7
Q ss_pred CccccccccccccCCCCCCCCCCC
Q psy14139 143 RPHICSFWVKGECRRGEECPYRHE 166 (327)
Q Consensus 143 ~~~~C~ff~kG~C~rG~~Cpy~H~ 166 (327)
+..+|.+|..|.|.+|+.|+|.|.
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCc
Confidence 456899999999999999999996
No 100
>KOG0120|consensus
Probab=96.97 E-value=0.0008 Score=67.26 Aligned_cols=96 Identities=22% Similarity=0.445 Sum_probs=78.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
....+|||+||..+++..++++...||.+....++. +++|||.+|.+..-...|++. +||..+.+..|.|..+
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~ag-LnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAG-LNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcc-cchhhhcCceeEeehh
Confidence 346899999999999999999999999999988775 389999999999999999998 7999999999999998
Q ss_pred cCCCCCCCCcccccccccCCCCCCC
Q psy14139 286 RAQANRGEDTAELKVRLEPVPGLPG 310 (327)
Q Consensus 286 k~~~~~~~~~~~~~~~~~pv~Glp~ 310 (327)
-........... ..-.+++||+.
T Consensus 367 ~~g~~~~~~~~~--~~~~~~~~i~~ 389 (500)
T KOG0120|consen 367 IVGASNANVNFN--ISQSQVPGIPL 389 (500)
T ss_pred hccchhccccCC--ccccccccchh
Confidence 877665443222 01114677763
No 101
>KOG0147|consensus
Probab=96.88 E-value=0.00053 Score=68.16 Aligned_cols=82 Identities=22% Similarity=0.437 Sum_probs=72.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
++.+..+|+|+..|...+++.+|.++|+.+|.|..|+++.+ +|.|||+|.+.++...|+. |.|..+.|.+|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia--LsGqrllg~pv~ 251 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA--LSGQRLLGVPVI 251 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh--hcCCcccCceeE
Confidence 45567789999999999999999999999999999999874 7999999999999999996 799999999999
Q ss_pred EEeccCCCCC
Q psy14139 282 IKWGRAQANR 291 (327)
Q Consensus 282 V~~ak~~~~~ 291 (327)
|......+.+
T Consensus 252 vq~sEaeknr 261 (549)
T KOG0147|consen 252 VQLSEAEKNR 261 (549)
T ss_pred ecccHHHHHH
Confidence 9876554443
No 102
>KOG0226|consensus
Probab=96.86 E-value=0.0013 Score=59.79 Aligned_cols=75 Identities=16% Similarity=0.411 Sum_probs=63.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
+.....||.|.|..+++.+.|-..|.+|-.-...++++ .+||+||.|.+..++..|+.. ++|..++.++|+++
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmre-m~gkyVgsrpiklR 265 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMRE-MNGKYVGSRPIKLR 265 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHh-hcccccccchhHhh
Confidence 34457999999999999999999999986555555554 479999999999999999998 59999999998875
Q ss_pred ec
Q psy14139 284 WG 285 (327)
Q Consensus 284 ~a 285 (327)
=+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 33
No 103
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=96.59 E-value=0.00056 Score=40.96 Aligned_cols=23 Identities=30% Similarity=1.077 Sum_probs=17.4
Q ss_pred ccccccccc-cccCCCCCCCCCCC
Q psy14139 144 PHICSFWVK-GECRRGEECPYRHE 166 (327)
Q Consensus 144 ~~~C~ff~k-G~C~rG~~Cpy~H~ 166 (327)
..+|.+|.+ |.|.+|+.|.|.|.
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 568999955 99999999999995
No 104
>KOG0129|consensus
Probab=96.42 E-value=0.014 Score=57.99 Aligned_cols=56 Identities=20% Similarity=0.401 Sum_probs=46.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec---------CCC---eEEEEeCCHHHHHHHHHHh
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS---------KQQ---CAFIQYTSRPAAEAAVEHS 269 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~---------~kg---~aFV~F~~~~~Ae~A~~~~ 269 (327)
.+.+|||+||.+++|+.|...|..||.+. |.... .+| |+|+.|+++.+...-+.++
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 46899999999999999999999999753 33331 256 9999999998888877765
No 105
>KOG1855|consensus
Probab=96.34 E-value=0.0042 Score=60.32 Aligned_cols=58 Identities=28% Similarity=0.375 Sum_probs=52.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-------------------CCeEEEEeCCHHHHHHHHHH
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-------------------QQCAFIQYTSRPAAEAAVEH 268 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-------------------kg~aFV~F~~~~~Ae~A~~~ 268 (327)
-..++|.+-|||.+-.-+.|.++|+.+|.|++|+|+.. +-||+|+|...++|.+|.+-
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 46789999999999888999999999999999999862 56999999999999999985
No 106
>KOG1456|consensus
Probab=96.17 E-value=0.025 Score=54.20 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=62.2
Q ss_pred ccEEEEcCCC--CCCCHHHHHHHHhhcCCeEEEEEecCCC-eEEEEeCCHHHHHHHHHHhcCCeEEC-C-eeEEEEeccC
Q psy14139 213 ITTLYVGNLG--DKLTEQDLRDHFYQFGEIRSVTILSKQQ-CAFIQYTSRPAAEAAVEHSFNKVILG-G-RRLNIKWGRA 287 (327)
Q Consensus 213 ~~tLfVgnLp--~~ite~~Lr~~F~~fG~I~~v~i~~~kg-~aFV~F~~~~~Ae~A~~~~l~g~~i~-G-~~L~V~~ak~ 287 (327)
++-|.+.=|. ..|+-+.|..+-...|+|..|.|.+..+ .|.|+|++.+.|++|.++ +||..|. | ..|+|++|+|
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~a-lNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAA-LNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhh-cccccccccceeEEEEecCc
Confidence 4455555444 3788899999999999999999987654 599999999999999998 7987664 4 7899999998
Q ss_pred CC
Q psy14139 288 QA 289 (327)
Q Consensus 288 ~~ 289 (327)
..
T Consensus 199 ~r 200 (494)
T KOG1456|consen 199 TR 200 (494)
T ss_pred ce
Confidence 65
No 107
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.02 E-value=0.03 Score=47.23 Aligned_cols=71 Identities=21% Similarity=0.412 Sum_probs=51.4
Q ss_pred cEEEEcCCCC------CCCH---HHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 214 TTLYVGNLGD------KLTE---QDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 214 ~tLfVgnLp~------~ite---~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
.|+.|.-+.+ ...+ .+|-+.|..||++.-++++. +.-+|+|.+-++|-+|+. ++|..++|+.|+|+.
T Consensus 28 aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals--~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 28 ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS--LDGIQVNGRTLKIRL 103 (146)
T ss_dssp -EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH--GCCSEETTEEEEEEE
T ss_pred ceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc--cCCcEECCEEEEEEe
Confidence 3666654441 2332 36777888999999888885 578999999999999998 699999999999987
Q ss_pred ccCC
Q psy14139 285 GRAQ 288 (327)
Q Consensus 285 ak~~ 288 (327)
..|.
T Consensus 104 Ktpd 107 (146)
T PF08952_consen 104 KTPD 107 (146)
T ss_dssp ----
T ss_pred CCcc
Confidence 5544
No 108
>KOG0120|consensus
Probab=95.91 E-value=0.022 Score=57.18 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=50.6
Q ss_pred HHHHHHHhhcCCeEEEEEecC---------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 228 QDLRDHFYQFGEIRSVTILSK---------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 228 ~~Lr~~F~~fG~I~~v~i~~~---------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
++++.-+++||.|.+|.+.+. .|..||+|.+.+++++|.++ |+|..++|+.+...+-...
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~-L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEE-LTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHH-ccCceeCCcEEEEEecCHH
Confidence 345666778999999998764 58899999999999999998 7999999999888775543
No 109
>KOG1456|consensus
Probab=95.90 E-value=0.051 Score=52.18 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=67.8
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEEecC-CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 211 KTITTLYVGNLGD-KLTEQDLRDHFYQFGEIRSVTILSK-QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 211 ~~~~tLfVgnLp~-~ite~~Lr~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
.+..-+-|.+|.. .++-+.|..+|..||.|+.|+.++. .+-|.|+..+..+.++|+.. ||+..+-|.+|.|..++..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~h-Lnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTH-LNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHH-hccCccccceEEEeecccc
Confidence 4456888999987 6778899999999999999999875 58999999999999999998 7998889999999988754
No 110
>KOG1995|consensus
Probab=95.84 E-value=0.0098 Score=56.62 Aligned_cols=80 Identities=26% Similarity=0.375 Sum_probs=66.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEE--------EEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSV--------TILS------KQQCAFIQYTSRPAAEAAVEHSFNKVIL 275 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v--------~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i 275 (327)
.....++||-+|+..+++++|.++|.++|.|..= .|-. .++-|.|+|.+..+|+.|+. ++++..+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~-~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIE-WFAGKDF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhh-hhccccc
Confidence 3456799999999999999999999999987542 2211 27899999999999999998 5899999
Q ss_pred CCeeEEEEeccCCCC
Q psy14139 276 GGRRLNIKWGRAQAN 290 (327)
Q Consensus 276 ~G~~L~V~~ak~~~~ 290 (327)
.|..|+|..+..+..
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999988876653
No 111
>KOG4676|consensus
Probab=95.71 E-value=0.039 Score=53.21 Aligned_cols=67 Identities=13% Similarity=0.372 Sum_probs=55.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC---------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK---------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 215 tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~---------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
-|-|.||.+.++.+.++.+|...|+|..+.+.+. ...+||.|.+...+..|.. |-..++=++.|.|.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh--Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH--LTNTVFVDRALIVR 84 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh--hccceeeeeeEEEE
Confidence 7889999999999999999999999999998773 5789999999999998864 45555555555443
No 112
>KOG4210|consensus
Probab=95.70 E-value=0.0076 Score=56.73 Aligned_cols=76 Identities=28% Similarity=0.527 Sum_probs=66.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
+-++|++|+..+++++|+.+|..+|.|..+++... +++|||.|.....+..++.. +...+.++++.+....+
T Consensus 186 ~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 186 TIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND--QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred cceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc--ccCcccCcccccccCCC
Confidence 44559999999999999999999999999998763 69999999999999988863 67788999999998888
Q ss_pred CCCC
Q psy14139 288 QANR 291 (327)
Q Consensus 288 ~~~~ 291 (327)
.+..
T Consensus 264 ~~~~ 267 (285)
T KOG4210|consen 264 RPKS 267 (285)
T ss_pred Cccc
Confidence 7654
No 113
>KOG3152|consensus
Probab=95.68 E-value=0.0066 Score=55.35 Aligned_cols=66 Identities=21% Similarity=0.449 Sum_probs=56.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCC------------------CeEEEEeCCHHHHHHHHHHhcCCe
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQ------------------QCAFIQYTSRPAAEAAVEHSFNKV 273 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~k------------------g~aFV~F~~~~~Ae~A~~~~l~g~ 273 (327)
..--+|+++||+.+....|+++|+.||+|-.|-+.+.. .-|.|+|.+...|...+.. ||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~-Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAEL-LNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHH-hCCC
Confidence 34579999999999999999999999999999887621 1267999999999988875 8999
Q ss_pred EECCe
Q psy14139 274 ILGGR 278 (327)
Q Consensus 274 ~i~G~ 278 (327)
.|+|+
T Consensus 152 ~Iggk 156 (278)
T KOG3152|consen 152 PIGGK 156 (278)
T ss_pred ccCCC
Confidence 99885
No 114
>KOG4211|consensus
Probab=95.68 E-value=0.038 Score=54.72 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=54.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEE-EEEec-----CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRS-VTILS-----KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~-v~i~~-----~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
-.+-+.+||..++++||.++|+-.--+.. |.++. ..+-|||.|++.+.||.|+.. +...|+.+-|.|.-+
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r--hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR--HRENIGHRYIEVFRS 179 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH--HHHhhccceEEeehh
Confidence 46777899999999999999986643333 22222 257899999999999999985 777788787777654
No 115
>KOG1548|consensus
Probab=95.67 E-value=0.048 Score=51.81 Aligned_cols=75 Identities=16% Similarity=0.331 Sum_probs=60.0
Q ss_pred CCccEEEEcCCCC----CCC-------HHHHHHHHhhcCCeEEEEEe--cCCCeEEEEeCCHHHHHHHHHHhcCCeEECC
Q psy14139 211 KTITTLYVGNLGD----KLT-------EQDLRDHFYQFGEIRSVTIL--SKQQCAFIQYTSRPAAEAAVEHSFNKVILGG 277 (327)
Q Consensus 211 ~~~~tLfVgnLp~----~it-------e~~Lr~~F~~fG~I~~v~i~--~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G 277 (327)
+..+++.+.|+=. .-+ +++|++--++||.|.+|.|. +..|.+-|.|.+.++|..+++. ++|..++|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~-m~GR~fdg 341 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQT-MDGRWFDG 341 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHH-hcCeeecc
Confidence 4457888887742 222 34566667799999999998 5689999999999999999996 79999999
Q ss_pred eeEEEEecc
Q psy14139 278 RRLNIKWGR 286 (327)
Q Consensus 278 ~~L~V~~ak 286 (327)
+.|....-.
T Consensus 342 Rql~A~i~D 350 (382)
T KOG1548|consen 342 RQLTASIWD 350 (382)
T ss_pred eEEEEEEeC
Confidence 999876543
No 116
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.57 E-value=0.049 Score=48.00 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=49.2
Q ss_pred CHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcC--CeEECCeeEEEEeccCCCC
Q psy14139 226 TEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFN--KVILGGRRLNIKWGRAQAN 290 (327)
Q Consensus 226 te~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~--g~~i~G~~L~V~~ak~~~~ 290 (327)
....|+++|..|+.+..+..+++-+-..|.|.+.+.|..|... ++ +..+.|..++|.++.+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~-l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQL-LHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHT-ST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHH-hcccccccCCCceEEEEcccccc
Confidence 3478999999999999999999888899999999999999986 68 8999999999999965543
No 117
>KOG1365|consensus
Probab=95.00 E-value=0.06 Score=51.85 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=56.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCC-eEE--EEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGE-IRS--VTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~-I~~--v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
..-|-+.+||.+.+-++|.++|..|.. |.. |.|+.+ .|-|||+|.+.+.|..|+... +....+++-|.|.-
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~-hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKC-HKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHH-HHhhcccceEEEee
Confidence 446778999999999999999999864 433 555543 688999999999999998875 44555778888865
Q ss_pred cc
Q psy14139 285 GR 286 (327)
Q Consensus 285 ak 286 (327)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 43
No 118
>KOG2193|consensus
Probab=94.87 E-value=0.018 Score=55.89 Aligned_cols=79 Identities=29% Similarity=0.378 Sum_probs=62.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCCCC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRG 292 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~~~ 292 (327)
..||+|||.+..+..+|+.+|...---.+-.++...+++||.+.+...|.+|++.+.....+.|.++.|..+-++..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrs 80 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRS 80 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHh
Confidence 4789999999999999999997542112233455689999999999999999998444468999999998887776553
No 119
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.79 E-value=0.14 Score=42.97 Aligned_cols=75 Identities=23% Similarity=0.384 Sum_probs=57.2
Q ss_pred CCCCccEEEEcCCCCCCCH----HHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 209 EDKTITTLYVGNLGDKLTE----QDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite----~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
.++...||.|.=|..++.- ..|...++.||+|.+|.+. .+.-|.|.|.+..+|=+|+.+ ++. ...|..++..|
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~A-f~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSA-FQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHh-hcC-CCCCceEEeec
Confidence 4556679999877665442 3455567789999999766 456799999999999999998 454 56778888888
Q ss_pred cc
Q psy14139 285 GR 286 (327)
Q Consensus 285 ak 286 (327)
..
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 54
No 120
>KOG0129|consensus
Probab=94.52 E-value=0.15 Score=50.91 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=51.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHh-hcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHH
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFY-QFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEH 268 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~-~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~ 268 (327)
.+|+|||+||.-++-++|-.+|. -||.|..+-|-.+ +|-|=|+|.+-.+--+|+.+
T Consensus 370 rrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 370 RRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 47999999999999999999998 6999999988765 78899999999999999986
No 121
>KOG4285|consensus
Probab=94.41 E-value=0.17 Score=47.42 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=54.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCe-eEEEEe
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGR-RLNIKW 284 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~-~L~V~~ 284 (327)
.=+-|.++++.-. ..|..+|++||+|.+.....+..+-+|.|.++.+|.+|+.. +|.+|+|. .|-|+-
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk--ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK--NGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh--cCeeeccceEEeeee
Confidence 3455567777544 45677899999999888777788999999999999999984 99999984 455654
No 122
>KOG0112|consensus
Probab=94.30 E-value=0.015 Score=61.22 Aligned_cols=76 Identities=26% Similarity=0.431 Sum_probs=62.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS-----KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~-----~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
...+.|||+|||+..+++.+|+..|..+|.|.+|.|.. ...+|||.|.+...+-.|...+ .+..|..-.+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~-s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEE-SGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhh-cCCccccCcccccc
Confidence 35678999999999999999999999999999998865 3579999999999999999874 55555444555555
Q ss_pred cc
Q psy14139 285 GR 286 (327)
Q Consensus 285 ak 286 (327)
+.
T Consensus 448 G~ 449 (975)
T KOG0112|consen 448 GQ 449 (975)
T ss_pred cc
Confidence 53
No 123
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=94.05 E-value=0.035 Score=30.35 Aligned_cols=18 Identities=39% Similarity=1.161 Sum_probs=15.5
Q ss_pred ccccccccccCCCCCCCCCC
Q psy14139 146 ICSFWVKGECRRGEECPYRH 165 (327)
Q Consensus 146 ~C~ff~kG~C~rG~~Cpy~H 165 (327)
.|.||.. |..++.|+|.|
T Consensus 1 ~Ck~~~~--C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSH 18 (19)
T ss_pred CCcCcCC--CCCCCcCccCC
Confidence 4888874 99999999998
No 124
>KOG2314|consensus
Probab=93.75 E-value=0.16 Score=51.30 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=55.2
Q ss_pred cEEEEcCCCCCCC------HHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECC-eeEE
Q psy14139 214 TTLYVGNLGDKLT------EQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGG-RRLN 281 (327)
Q Consensus 214 ~tLfVgnLp~~it------e~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G-~~L~ 281 (327)
.-++|.|+|.--. ...|..+|+++|+|..+-+..+ +|+.|++|.+...|+.|++. +||..++- +.+.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~-l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKS-LNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHh-cccceecccceEE
Confidence 5788899986322 2346788999999998887743 79999999999999999998 78877764 6666
Q ss_pred EEe
Q psy14139 282 IKW 284 (327)
Q Consensus 282 V~~ 284 (327)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 654
No 125
>KOG0115|consensus
Probab=93.39 E-value=0.16 Score=46.45 Aligned_cols=56 Identities=23% Similarity=0.396 Sum_probs=49.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHh
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHS 269 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~ 269 (327)
..|||.||+..++-+.+...|+.||+|..-.+..+ .+-++|.|...-.|.+|+..+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 68999999999999999999999999987655543 467899999999999999875
No 126
>KOG2416|consensus
Probab=93.18 E-value=0.085 Score=53.41 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=63.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhh-cCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEE---CCeeEEEEec
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQ-FGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVIL---GGRRLNIKWG 285 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~-fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i---~G~~L~V~~a 285 (327)
......|||.||-.-+|.-.|+.++.. .|.|.+..|-+-+..+||.|.+.++|-.-..+ |+|+.+ +++.|.+.|+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~A-lhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREA-LHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHH-HhccccCCCCCceeEeeec
Confidence 344568999999999999999999995 56677776666689999999999999999988 577665 3478999888
Q ss_pred cC
Q psy14139 286 RA 287 (327)
Q Consensus 286 k~ 287 (327)
..
T Consensus 520 ~~ 521 (718)
T KOG2416|consen 520 RA 521 (718)
T ss_pred ch
Confidence 64
No 127
>KOG0105|consensus
Probab=93.01 E-value=0.98 Score=39.67 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=58.2
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEE
Q psy14139 205 LDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVIL 275 (327)
Q Consensus 205 ~~~p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i 275 (327)
-.+|...+.-.+.|.+||.+-+.++|+++..+-|.+....+..+ +.+.|.|...++.+-|+.. |....+
T Consensus 107 rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r~eDMkYAvr~-ld~~~~ 175 (241)
T KOG0105|consen 107 RGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLRKEDMKYAVRK-LDDQKF 175 (241)
T ss_pred cCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeeeehhhHHHHHHh-hccccc
Confidence 34566777789999999999999999999999999988877755 5899999999999999997 454443
No 128
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.89 E-value=0.67 Score=33.42 Aligned_cols=53 Identities=11% Similarity=0.308 Sum_probs=42.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhc---CCeEEEEEecCCCeEEEEeCCHHHHHHHHHH
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQF---GEIRSVTILSKQQCAFIQYTSRPAAEAAVEH 268 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~f---G~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~ 268 (327)
.+|+|.|+. +++.++|+.+|..| .....|.++.+..| =|.|.+.+.|.+|+.+
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtSc-Nvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTSC-NVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCcE-EEEECCHHHHHHHHHc
Confidence 489999985 58889999999998 23467888877664 5679999999999875
No 129
>KOG4307|consensus
Probab=92.23 E-value=0.45 Score=49.25 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=58.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeE-EEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIR-SVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~-~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
+-|-+.|+|.+++-+||-++|+-|-.+- +|++-.+ .|-+-|.|+++++|.+|... +++..|..+.|.+..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~d-l~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMD-LDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhc-cccCcccceeEEEEe
Confidence 4677899999999999999999996553 4444332 57899999999999999997 799999999887754
No 130
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.44 E-value=0.81 Score=35.04 Aligned_cols=52 Identities=19% Similarity=0.382 Sum_probs=38.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHH
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEH 268 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~ 268 (327)
.-+||+ +|.++...||.++|+.||.|. |..+. -.-|||....++.|..|+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~-dTSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIN-DTSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEEC-TTEEEEEECCCHHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEc-CCcEEEEeecHHHHHHHHHH
Confidence 345555 999999999999999999974 44443 45699999999999999886
No 131
>KOG1996|consensus
Probab=90.98 E-value=0.74 Score=43.10 Aligned_cols=60 Identities=20% Similarity=0.359 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCCeEEEEEecC-------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 227 EQDLRDHFYQFGEIRSVTILSK-------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 227 e~~Lr~~F~~fG~I~~v~i~~~-------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
|+++++-..+||.|..|.|... .---||+|+..++|-+|+-. +||..|+|+.++..|-.-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vd-lnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVD-LNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHh-cCCceecceeeeheeccH
Confidence 4566777789999998877642 34589999999999999985 899999999888776543
No 132
>KOG4849|consensus
Probab=90.48 E-value=1.1 Score=43.01 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=51.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcC--CeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCee
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFG--EIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRR 279 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG--~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~ 279 (327)
--+|||||-+.++++||.+....-| .|.++++.. ++|||+|...+..+.++-++- |....|.|+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~Mei-LP~k~iHGQ~ 153 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEI-LPTKTIHGQS 153 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHh-cccceecCCC
Confidence 4799999999999999998887666 344444433 489999999999888888874 7888888854
No 133
>KOG2068|consensus
Probab=89.92 E-value=0.11 Score=49.25 Aligned_cols=72 Identities=22% Similarity=0.421 Sum_probs=54.9
Q ss_pred cEEEEcCCCCCCCHHH-HH--HHHhhcCCeEEEEEecCC---------CeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 214 TTLYVGNLGDKLTEQD-LR--DHFYQFGEIRSVTILSKQ---------QCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~-Lr--~~F~~fG~I~~v~i~~~k---------g~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
.-+||-+|+..+..+. |+ ++|.+||.|.+|.+..+. .-++|+|...++|..|+.. .+|..++|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~-v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDD-VDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHH-hhhHHhhhhhhH
Confidence 3567777876554443 33 679999999999887632 2389999999999999998 599999988776
Q ss_pred EEecc
Q psy14139 282 IKWGR 286 (327)
Q Consensus 282 V~~ak 286 (327)
..++.
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 66653
No 134
>KOG0128|consensus
Probab=89.77 E-value=0.23 Score=52.30 Aligned_cols=77 Identities=10% Similarity=0.131 Sum_probs=64.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
...+||.|.|..-|.++++.+++.+|.+.+++++.. +|.|||.|.+..+|.++... .....+.-..+.|..+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s-~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVAS-VDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhccc-chhhhhhhcCccccccCC
Confidence 368999999999999999999999999999987653 68999999999999999876 466666666777777666
Q ss_pred CCC
Q psy14139 288 QAN 290 (327)
Q Consensus 288 ~~~ 290 (327)
...
T Consensus 815 ~~~ 817 (881)
T KOG0128|consen 815 ERD 817 (881)
T ss_pred ccc
Confidence 433
No 135
>KOG4574|consensus
Probab=88.14 E-value=0.69 Score=48.91 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=63.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEE--CCeeEEEEeccCCCC
Q psy14139 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVIL--GGRRLNIKWGRAQAN 290 (327)
Q Consensus 215 tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i--~G~~L~V~~ak~~~~ 290 (327)
+.++.|.+-..+...|..+++.||.+.+.+.+++-..|.|.|.+.+.|-.|..+ ++|..+ .|-+.+|.+++.-+-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dA-l~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDA-LQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhh-hcCCcccccCCceeEEecccccc
Confidence 455566677788889999999999999999999999999999999999999998 687654 577899999986543
No 136
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=87.34 E-value=4.6 Score=32.54 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=45.7
Q ss_pred cEEEEcCCCC-CCCHHHHHHHHhhc-CCeEEEEEecC----CCeEEEEeCCHHHHHHHHHHhcCCeEECC
Q psy14139 214 TTLYVGNLGD-KLTEQDLRDHFYQF-GEIRSVTILSK----QQCAFIQYTSRPAAEAAVEHSFNKVILGG 277 (327)
Q Consensus 214 ~tLfVgnLp~-~ite~~Lr~~F~~f-G~I~~v~i~~~----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G 277 (327)
+++.|--.|. -++-++|..+.+.+ ..|..++|+++ +-.+.+.|.+.+.|...... +||..++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~-fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEE-FNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHH-hCCCccCC
Confidence 4444444554 55555666555555 46788899875 44799999999999999997 89988876
No 137
>KOG0128|consensus
Probab=87.33 E-value=0.035 Score=58.17 Aligned_cols=60 Identities=30% Similarity=0.479 Sum_probs=52.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHH
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRPAAEAAVEH 268 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~ 268 (327)
+.+...++||.||+..+.+.+|...|+.+|.+..+++.. -+|.|||.|...+.+.+|+.-
T Consensus 663 ~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 663 EIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred HHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 336667999999999999999999999999998887762 279999999999999999873
No 138
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.71 E-value=1.3 Score=32.88 Aligned_cols=67 Identities=19% Similarity=0.389 Sum_probs=38.7
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhhcCCe-----EEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 215 TLYVG-NLGDKLTEQDLRDHFYQFGEI-----RSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 215 tLfVg-nLp~~ite~~Lr~~F~~fG~I-----~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
+|||. |--..++..+|..++..-+.| -.|.|. ..|+||+-... .|+.+++. +++..+.|++++|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~~-~a~~v~~~-l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPEE-VAEKVLEA-LNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-TT--HHHHHHH-HTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECHH-HHHHHHHH-hcCCCCCCeeEEEEEC
Confidence 56663 233478888999999876544 445554 67889888654 77888887 6999999999999764
No 139
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=85.08 E-value=2 Score=37.56 Aligned_cols=74 Identities=11% Similarity=0.118 Sum_probs=49.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhh-cCCe---EEEEEecC--------CCeEEEEeCCHHHHHHHHHHhcCCeEECC--
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQ-FGEI---RSVTILSK--------QQCAFIQYTSRPAAEAAVEHSFNKVILGG-- 277 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~-fG~I---~~v~i~~~--------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G-- 277 (327)
....|.|.+||+.++|+++.+.++. ++.. ..+.-... -.-|||.|.+.+.+...... ++|..+-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~-~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDR-FDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHH-CTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHh-cCCcEEECCC
Confidence 3469999999999999999987776 6655 34431111 35699999999999888887 79977643
Q ss_pred ---eeEEEEecc
Q psy14139 278 ---RRLNIKWGR 286 (327)
Q Consensus 278 ---~~L~V~~ak 286 (327)
.+-.|.+|-
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 345676664
No 140
>KOG4307|consensus
Probab=84.96 E-value=0.51 Score=48.88 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=57.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEE-EEEec-----CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRS-VTILS-----KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~-v~i~~-----~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..--|||.+||..+++.++-++|...-.|++ |.+.. .++.|||.|...+++..|+.. -....++.+.|+|.-.
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~-~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSV-KTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhc-ccccccCceEEEeech
Confidence 3468999999999999999999998777766 55543 268999999998888888764 4556666788888643
No 141
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.38 E-value=0.43 Score=31.48 Aligned_cols=12 Identities=58% Similarity=1.351 Sum_probs=10.7
Q ss_pred CCcccccCCcce
Q psy14139 24 GKECKICARPFT 35 (327)
Q Consensus 24 g~eckic~rpft 35 (327)
.+.|.+|.||||
T Consensus 8 ~K~C~~C~rpf~ 19 (42)
T PF10013_consen 8 SKICPVCGRPFT 19 (42)
T ss_pred CCcCcccCCcch
Confidence 478999999996
No 142
>KOG1365|consensus
Probab=81.43 E-value=1.7 Score=42.14 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=49.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhc----CCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQF----GEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~f----G~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
--+-..+||.+.++.++.++|.+- |..+.|-.+.. .|=|||.|..++.|+.|+.. +...++.+-|.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k--hrq~iGqRYIEl 237 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK--HRQNIGQRYIEL 237 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH--HHHHHhHHHHHH
Confidence 345568999999999999999632 34445544442 58899999999999999986 555565555544
No 143
>KOG4410|consensus
Probab=80.33 E-value=5 Score=37.58 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=42.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCe-EEEEEecCCCeEEEEeCCHHHH
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEI-RSVTILSKQQCAFIQYTSRPAA 262 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I-~~v~i~~~kg~aFV~F~~~~~A 262 (327)
.+-+|++||+.++.-.||+..+.+.|-+ .++.+....+-+|+.|.++..+
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKGV 380 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCccCC
Confidence 4679999999999999999999888754 6777777889999999987554
No 144
>KOG0804|consensus
Probab=80.24 E-value=4.7 Score=39.98 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=57.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhc-CCeEEEEEecC----CCeEEEEeCCHHHHHHHHHHhcCCeEECC
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQF-GEIRSVTILSK----QQCAFIQYTSRPAAEAAVEHSFNKVILGG 277 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~f-G~I~~v~i~~~----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G 277 (327)
+.+.+.|+|-.+|..++-.||-.+...| -.|.+++++++ +-.+.|.|.+.++|....+. +||..++.
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~e-fNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEE-FNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHH-cCCCcCCC
Confidence 3347899999999999999999988776 56889999885 45689999999999999998 89988876
No 145
>KOG2494|consensus
Probab=79.61 E-value=0.6 Score=44.25 Aligned_cols=23 Identities=26% Similarity=0.921 Sum_probs=20.8
Q ss_pred ccccccccccccCCCCC-CCCCCC
Q psy14139 144 PHICSFWVKGECRRGEE-CPYRHE 166 (327)
Q Consensus 144 ~~~C~ff~kG~C~rG~~-Cpy~H~ 166 (327)
-.+|..|.||.|+||+. |.|.|-
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHHhccccCCCccccccCC
Confidence 46999999999999998 999994
No 146
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=79.27 E-value=1.7 Score=29.57 Aligned_cols=41 Identities=20% Similarity=0.558 Sum_probs=31.3
Q ss_pred hccccCCcccccC--CcceeEEecCCCCCc-ccchhhhhhhhcc
Q psy14139 19 TKEKYGKECKICA--RPFTVFRWCPGARMR-FKKTEVCQTCARL 59 (327)
Q Consensus 19 ~k~~~g~eckic~--rpft~f~w~~~~~~~-~kkt~ic~~ca~~ 59 (327)
++.+.|..|-.|+ -+++||.--|..... =.--.||.||..+
T Consensus 2 L~~Rs~~kCELC~a~~~L~vy~Vpp~~~~~~d~~iliC~tC~~Q 45 (47)
T smart00782 2 LLARCESKCELCGSDSPLVVYAVPPSSDVTADNSVMLCDTCHSQ 45 (47)
T ss_pred hhHHcCCcccCcCCCCCceEEecCCCCCCCccceeeechHHHHh
Confidence 4567788899998 789999987765433 3456899999875
No 147
>KOG4019|consensus
Probab=78.20 E-value=3.4 Score=36.14 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=55.7
Q ss_pred cEEEEcCCCCCCC-----HHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCe-eEEEEeccC
Q psy14139 214 TTLYVGNLGDKLT-----EQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGR-RLNIKWGRA 287 (327)
Q Consensus 214 ~tLfVgnLp~~it-----e~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~-~L~V~~ak~ 287 (327)
+++.+-+++..+- ......+|.+|-+....++++..+..-|.|.+.+.|..|... +++..+.|. .++..++.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~-~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIK-LHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHH-hhhcccCCCceEEEEEccC
Confidence 5667777776432 234456666777766666776777788999999999999885 788889987 888888776
Q ss_pred CCC
Q psy14139 288 QAN 290 (327)
Q Consensus 288 ~~~ 290 (327)
...
T Consensus 90 ~~~ 92 (193)
T KOG4019|consen 90 GHP 92 (193)
T ss_pred CCc
Confidence 543
No 148
>KOG1040|consensus
Probab=77.22 E-value=0.93 Score=43.44 Aligned_cols=25 Identities=32% Similarity=1.103 Sum_probs=20.6
Q ss_pred CccccccccccccCCCCCCCCCCCC
Q psy14139 143 RPHICSFWVKGECRRGEECPYRHEK 167 (327)
Q Consensus 143 ~~~~C~ff~kG~C~rG~~Cpy~H~~ 167 (327)
+..+|.||.+|.|+.|++|.|.|+.
T Consensus 76 ~~~vcK~~l~glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 76 GKVVCKHWLRGLCKKGDQCEFLHEY 100 (325)
T ss_pred CceeehhhhhhhhhccCcCcchhhh
Confidence 3568889988999999999998863
No 149
>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function.
Probab=75.76 E-value=0.59 Score=32.93 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=28.1
Q ss_pred cccccCCcceeEEecCCC---CCcccchhhhhhhh
Q psy14139 26 ECKICARPFTVFRWCPGA---RMRFKKTEVCQTCA 57 (327)
Q Consensus 26 eckic~rpft~f~w~~~~---~~~~kkt~ic~~ca 57 (327)
.|=||...+++-.|.+.. ++|-+.|.+|..|.
T Consensus 4 kC~lCdk~~~Id~~~~~aKrLrnrPi~tYmC~eC~ 38 (56)
T PF09963_consen 4 KCILCDKKEEIDEDTPEAKRLRNRPIHTYMCDECK 38 (56)
T ss_pred EEEecCCEEEeccCCHHHHHhhcCCCcceeChhHH
Confidence 589999999999999864 37789999999995
No 150
>KOG1040|consensus
Probab=72.91 E-value=2 Score=41.23 Aligned_cols=28 Identities=39% Similarity=1.067 Sum_probs=23.8
Q ss_pred CCccccccc-cccccCCCCCCCCCCCCCC
Q psy14139 142 NRPHICSFW-VKGECRRGEECPYRHEKPT 169 (327)
Q Consensus 142 ~~~~~C~ff-~kG~C~rG~~Cpy~H~~p~ 169 (327)
.+...|.|| ..|+|.+|.+|+|.|..|.
T Consensus 103 ~k~rec~ff~~~g~c~~~~~c~y~h~dpq 131 (325)
T KOG1040|consen 103 TKMRECKFFSLFGECTNGKDCPYLHGDPQ 131 (325)
T ss_pred cccccccccccccccccccCCcccCCChh
Confidence 566788889 7799999999999998763
No 151
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=72.10 E-value=2.6 Score=24.22 Aligned_cols=20 Identities=25% Similarity=0.906 Sum_probs=15.6
Q ss_pred cccccccc-ccCCCCCCCCCCC
Q psy14139 146 ICSFWVKG-ECRRGEECPYRHE 166 (327)
Q Consensus 146 ~C~ff~kG-~C~rG~~Cpy~H~ 166 (327)
+|.|...| .|+.. +|.|.|-
T Consensus 2 lC~yEl~Gg~Cnd~-~C~~QHf 22 (23)
T PF10650_consen 2 LCPYELTGGVCNDP-DCEFQHF 22 (23)
T ss_pred CCccccCCCeeCCC-CCCcccc
Confidence 68888777 88764 4999984
No 152
>KOG2591|consensus
Probab=71.71 E-value=9 Score=39.06 Aligned_cols=68 Identities=10% Similarity=0.141 Sum_probs=51.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhh--cCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhc-CCeEECCeeE
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQ--FGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSF-NKVILGGRRL 280 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~--fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l-~g~~i~G~~L 280 (327)
..+-+.+.-||....+++|+.+|.. +-++.++....+.+ =||+|++..+|+.|.+.+- .-..|.|++|
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 3356777899999999999999974 66777877766544 4899999999999987631 1245666544
No 153
>KOG1677|consensus
Probab=68.74 E-value=3.3 Score=39.47 Aligned_cols=28 Identities=32% Similarity=0.897 Sum_probs=24.2
Q ss_pred Cccccccccc-cccCCCCCCCCCCCCCCC
Q psy14139 143 RPHICSFWVK-GECRRGEECPYRHEKPTD 170 (327)
Q Consensus 143 ~~~~C~ff~k-G~C~rG~~Cpy~H~~p~~ 170 (327)
+..+|..|.+ |.|..|..|.|.|..+.+
T Consensus 176 kt~lC~~f~~tG~C~yG~rC~F~H~~~~~ 204 (332)
T KOG1677|consen 176 KTKLCPKFQKTGLCKYGSRCRFIHGEPED 204 (332)
T ss_pred CCcCCCccccCCCCCCCCcCeecCCCccc
Confidence 4789999955 999999999999987654
No 154
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=67.13 E-value=11 Score=35.62 Aligned_cols=76 Identities=16% Similarity=0.320 Sum_probs=60.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-------------CeEEEEeCCHHHHHHHHHHhcCC-----
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQ-------------QCAFIQYTSRPAAEAAVEHSFNK----- 272 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~k-------------g~aFV~F~~~~~Ae~A~~~~l~g----- 272 (327)
-..++|...|+..+++-..+-..|.+||.|++|-++.+. ....+.|-+++.+-......++.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 345788889999999999999999999999999998765 77889999999888776554442
Q ss_pred eEECCeeEEEEecc
Q psy14139 273 VILGGRRLNIKWGR 286 (327)
Q Consensus 273 ~~i~G~~L~V~~ak 286 (327)
..+....|.|.|..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 34556677777765
No 155
>KOG1595|consensus
Probab=66.21 E-value=3.6 Score=41.61 Aligned_cols=24 Identities=38% Similarity=0.901 Sum_probs=21.5
Q ss_pred ccccccccccccCCCCCCCCCCCC
Q psy14139 144 PHICSFWVKGECRRGEECPYRHEK 167 (327)
Q Consensus 144 ~~~C~ff~kG~C~rG~~Cpy~H~~ 167 (327)
...|..|.||.|.+|+.|-|-|..
T Consensus 236 ~tpCPefrkG~C~rGD~CEyaHgv 259 (528)
T KOG1595|consen 236 STPCPEFRKGSCERGDSCEYAHGV 259 (528)
T ss_pred CccCcccccCCCCCCCccccccce
Confidence 568999999999999999999943
No 156
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.44 E-value=1.9 Score=29.30 Aligned_cols=12 Identities=50% Similarity=1.295 Sum_probs=10.3
Q ss_pred CCcccccCCcce
Q psy14139 24 GKECKICARPFT 35 (327)
Q Consensus 24 g~eckic~rpft 35 (327)
.+-|.+|.|||+
T Consensus 12 ~KICpvCqRPFs 23 (54)
T COG4338 12 DKICPVCQRPFS 23 (54)
T ss_pred hhhhhhhcCchH
Confidence 467999999995
No 157
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1763|consensus
Probab=62.77 E-value=2.5 Score=39.61 Aligned_cols=28 Identities=25% Similarity=0.952 Sum_probs=24.4
Q ss_pred CCccccccccccccCCCCCCCCCCCCCC
Q psy14139 142 NRPHICSFWVKGECRRGEECPYRHEKPT 169 (327)
Q Consensus 142 ~~~~~C~ff~kG~C~rG~~Cpy~H~~p~ 169 (327)
.++.+|.||..|.|..|+.|.|.|....
T Consensus 90 PKSvvCafFk~g~C~KG~kCKFsHdl~~ 117 (343)
T KOG1763|consen 90 PKSVVCAFFKQGTCTKGDKCKFSHDLAV 117 (343)
T ss_pred chHHHHHHHhccCCCCCCcccccchHHH
Confidence 4578999999999999999999996543
No 159
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=61.87 E-value=4.6 Score=27.85 Aligned_cols=34 Identities=32% Similarity=0.855 Sum_probs=23.0
Q ss_pred CcccccCCcceeEEecCCCCCcccchhhhhhhhcccCccccccccc
Q psy14139 25 KECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDL 70 (327)
Q Consensus 25 ~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~ldl 70 (327)
..|.+|.++|++|.++. -|..|.++ +|..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~----------~Cr~Cg~~--~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRH----------HCRNCGRI--FCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCcccc----------ccCcCcCC--cChHHcCCe
Confidence 57999999999977653 35555544 566665443
No 160
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=60.91 E-value=52 Score=23.95 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 224 KLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 224 ~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
.++-.+++..+..|+-. +|..++--=||.|.+..+|++.... .+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tGfYIvF~~~~Ea~rC~~~-~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTGFYIVFNDSKEAERCFRA-EDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCEEEEEECChHHHHHHHHh-cCCCEEEEEEEEe
Confidence 56678999999999742 3445566679999999999999997 6888877766654
No 161
>KOG2253|consensus
Probab=60.61 E-value=5.1 Score=41.47 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=58.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
.-++||||+...++++-++.+....|-|.+..... |||..|.....+..|+.. +....++|..+.+..
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~-~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRL-LTELNIDDQKLIENV 107 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHH-hcccCCCcchhhccc
Confidence 35899999999999999999999999988776553 999999999999999985 688888887776644
No 162
>KOG1924|consensus
Probab=60.49 E-value=12 Score=39.89 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=13.8
Q ss_pred ccCcccccccccCCCCcHHHHHHHhhh
Q psy14139 59 LKNVCQTCLLDLEYGLPIQVRDTALKI 85 (327)
Q Consensus 59 ~kn~cq~c~ldl~~~lp~~~rd~~l~~ 85 (327)
+=|.=-+-.-||+| -+.+|..++.+
T Consensus 311 ~INal~t~p~dldf--RlhlR~E~mr~ 335 (1102)
T KOG1924|consen 311 FINALVTSPSDLDF--RLHLRSEFMRD 335 (1102)
T ss_pred HHHHhcCCHHHhhH--HHHHHHHHHHH
Confidence 44444444456665 35677777654
No 163
>KOG2185|consensus
Probab=60.32 E-value=4.3 Score=39.74 Aligned_cols=24 Identities=38% Similarity=1.002 Sum_probs=21.8
Q ss_pred cccccccccccCCCCCCCCCCCCC
Q psy14139 145 HICSFWVKGECRRGEECPYRHEKP 168 (327)
Q Consensus 145 ~~C~ff~kG~C~rG~~Cpy~H~~p 168 (327)
.+|+||..|.|+=++.|.|.|...
T Consensus 141 kpC~ffLeg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 141 KPCKFFLEGRCRFGENCRFSHGLD 164 (486)
T ss_pred ccchHhhccccccCcccccccCcc
Confidence 589999999999999999999654
No 164
>KOG4660|consensus
Probab=59.73 E-value=12 Score=38.10 Aligned_cols=42 Identities=26% Similarity=0.253 Sum_probs=34.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhcCCeEEC---C-eeEEEEeccCCCC
Q psy14139 248 KQQCAFIQYTSRPAAEAAVEHSFNKVILG---G-RRLNIKWGRAQAN 290 (327)
Q Consensus 248 ~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~---G-~~L~V~~ak~~~~ 290 (327)
+.|||||.|.+.+++..+.++ ++|..+. + +...+.||+-+..
T Consensus 430 NvGYAFINm~sp~ai~~F~kA-FnGk~W~~FnS~Kia~itYArIQGk 475 (549)
T KOG4660|consen 430 NVGYAFINMTSPEAIIRFYKA-FNGKKWEKFNSEKIASITYARIQGK 475 (549)
T ss_pred ccceeEEeecCHHHHHHHHHH-HcCCchhhhcceeeeeeehhhhhch
Confidence 369999999999999999998 7886553 3 4568888887765
No 165
>KOG2202|consensus
Probab=58.38 E-value=4.7 Score=37.11 Aligned_cols=26 Identities=38% Similarity=0.843 Sum_probs=23.0
Q ss_pred CccccccccccccCCCCCCCCCCCCC
Q psy14139 143 RPHICSFWVKGECRRGEECPYRHEKP 168 (327)
Q Consensus 143 ~~~~C~ff~kG~C~rG~~Cpy~H~~p 168 (327)
+--+|.+|.++.|.+|..|.|.|...
T Consensus 151 rea~C~~~e~~~C~rG~~CnFmH~k~ 176 (260)
T KOG2202|consen 151 REAICGQFERTECSRGGACNFMHVKR 176 (260)
T ss_pred hhhhhcccccccCCCCCcCcchhhhh
Confidence 35789999999999999999999764
No 166
>KOG1039|consensus
Probab=58.14 E-value=4.1 Score=39.43 Aligned_cols=25 Identities=36% Similarity=0.977 Sum_probs=23.5
Q ss_pred cccccccccccCCCCCCCCCCCCCC
Q psy14139 145 HICSFWVKGECRRGEECPYRHEKPT 169 (327)
Q Consensus 145 ~~C~ff~kG~C~rG~~Cpy~H~~p~ 169 (327)
.||.||.+|.|..|..|.|.|..|.
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhcccccccccceeeeeccCch
Confidence 6999999999999999999999885
No 167
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=56.39 E-value=6.2 Score=26.12 Aligned_cols=37 Identities=24% Similarity=0.727 Sum_probs=26.3
Q ss_pred cCCcccccCCcceeEEecCCCCCcccchhhhhhhhcccCcccccccccCC
Q psy14139 23 YGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEY 72 (327)
Q Consensus 23 ~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~ldl~~ 72 (327)
.+..|.+|.+|++=.||+ |+.|.. -.+|+.|..+-.+
T Consensus 3 ~~~~C~~C~~~i~g~ry~------------C~~C~d-~dlC~~Cf~~~~~ 39 (44)
T smart00291 3 HSYSCDTCGKPIVGVRYH------------CLVCPD-YDLCQSCFAKGSA 39 (44)
T ss_pred CCcCCCCCCCCCcCCEEE------------CCCCCC-ccchHHHHhCcCc
Confidence 466899999988655553 666654 6888888876544
No 168
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=55.62 E-value=4.1 Score=29.37 Aligned_cols=20 Identities=30% Similarity=0.800 Sum_probs=10.6
Q ss_pred cccCCcccccCCcceeEEec
Q psy14139 21 EKYGKECKICARPFTVFRWC 40 (327)
Q Consensus 21 ~~~g~eckic~rpft~f~w~ 40 (327)
+.....|.+|.++|++|+.+
T Consensus 6 d~~~~~C~~C~~~F~~~~rr 25 (69)
T PF01363_consen 6 DSEASNCMICGKKFSLFRRR 25 (69)
T ss_dssp GGG-SB-TTT--B-BSSS-E
T ss_pred CCCCCcCcCcCCcCCCceee
Confidence 34568899999999987554
No 169
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=50.86 E-value=6.7 Score=34.83 Aligned_cols=24 Identities=29% Similarity=0.924 Sum_probs=22.0
Q ss_pred Cccccccc-cccccCCCCCCCCCCC
Q psy14139 143 RPHICSFW-VKGECRRGEECPYRHE 166 (327)
Q Consensus 143 ~~~~C~ff-~kG~C~rG~~Cpy~H~ 166 (327)
.|.+|-.| ..|+|-.|+.|.|.|.
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred CcccccchhhcccccCCchhhhhhh
Confidence 37899999 8899999999999996
No 170
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=50.64 E-value=3.3 Score=33.62 Aligned_cols=36 Identities=33% Similarity=0.887 Sum_probs=22.8
Q ss_pred cCCcccccCCcceeEEecCCCCCcccchhhhhhhhcccCcccccccc
Q psy14139 23 YGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLD 69 (327)
Q Consensus 23 ~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~ld 69 (327)
....|-+|..||+ |-+..| .+|..|. +.||+.|-.+
T Consensus 53 ~~~~C~~C~~~fg-~l~~~~--------~~C~~C~--~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFG-FLFNRG--------RVCVDCK--HRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCS-CTSTTC--------EEETTTT--EEEETTSEEE
T ss_pred CCcchhhhCCccc-ccCCCC--------CcCCcCC--ccccCccCCc
Confidence 5678999999997 334444 5666665 4677777655
No 171
>KOG4210|consensus
Probab=50.41 E-value=13 Score=35.13 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=56.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
...+++|+|++...+.+.+...++..+|......+.. .++++.+.|...+.+..|+.. .....+.+..+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE-SGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh-hhccccccccccCcc
Confidence 4678999999999999998888899999766555433 479999999999999999984 333455554444433
Q ss_pred c
Q psy14139 285 G 285 (327)
Q Consensus 285 a 285 (327)
.
T Consensus 165 ~ 165 (285)
T KOG4210|consen 165 N 165 (285)
T ss_pred c
Confidence 3
No 172
>KOG2494|consensus
Probab=49.86 E-value=9.3 Score=36.42 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=22.4
Q ss_pred CCCccccccccccccCCCCCCCCCCCCC
Q psy14139 141 RNRPHICSFWVKGECRRGEECPYRHEKP 168 (327)
Q Consensus 141 r~~~~~C~ff~kG~C~rG~~Cpy~H~~p 168 (327)
.++-..|.+|.||.|.|.. |.|.|.-+
T Consensus 68 ~g~v~aC~Ds~kgrCsR~n-CkylHpp~ 94 (331)
T KOG2494|consen 68 NGRVIACFDSQKGRCSREN-CKYLHPPQ 94 (331)
T ss_pred CCeEEEEeccccCccCccc-ceecCCCh
Confidence 3456789999999999988 99999643
No 173
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=49.61 E-value=7.8 Score=26.38 Aligned_cols=32 Identities=28% Similarity=0.840 Sum_probs=23.3
Q ss_pred cccccCC-cceeEEecCCCCCcccchhhhhhhhc-ccCcccccccc
Q psy14139 26 ECKICAR-PFTVFRWCPGARMRFKKTEVCQTCAR-LKNVCQTCLLD 69 (327)
Q Consensus 26 eckic~r-pft~f~w~~~~~~~~kkt~ic~~ca~-~kn~cq~c~ld 69 (327)
.|.+|++ |.+=+||+ |+.|.. -=..||.|...
T Consensus 2 ~Cd~C~~~pI~G~R~~------------C~~C~~~d~DlC~~C~~~ 35 (48)
T cd02341 2 KCDSCGIEPIPGTRYH------------CSECDDGDFDLCQDCVVK 35 (48)
T ss_pred CCCCCCCCccccceEE------------CCCCCCCCCccCHHHHhC
Confidence 4899999 99999996 666652 24677777653
No 174
>KOG2318|consensus
Probab=48.59 E-value=1.1e+02 Score=31.68 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=60.7
Q ss_pred CCCCCCccEEEEcCCCC-CCCHHHHHHHHhhc----CCeEEEEEecC---------------------------------
Q psy14139 207 PPEDKTITTLYVGNLGD-KLTEQDLRDHFYQF----GEIRSVTILSK--------------------------------- 248 (327)
Q Consensus 207 ~p~d~~~~tLfVgnLp~-~ite~~Lr~~F~~f----G~I~~v~i~~~--------------------------------- 248 (327)
|+.....+.|-|-|+.+ .+.-.+|.-+|+.| |.|.+|.|.+.
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 34456678999999998 68888999999887 69999998641
Q ss_pred --------------------CCeEEEEeCCHHHHHHHHHHhcCCeEECCe--eEEEEe
Q psy14139 249 --------------------QQCAFIQYTSRPAAEAAVEHSFNKVILGGR--RLNIKW 284 (327)
Q Consensus 249 --------------------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~--~L~V~~ 284 (327)
--||.|+|.+.+.|....+.+ .|+.+... .|.++|
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~C-DG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEEC-DGIEFESSANKLDLRF 304 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhc-Ccceeccccceeeeee
Confidence 027999999999999999985 99988764 444444
No 175
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=48.04 E-value=35 Score=24.59 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=15.9
Q ss_pred HHHHHHHhhcCCeEEEEEe
Q psy14139 228 QDLRDHFYQFGEIRSVTIL 246 (327)
Q Consensus 228 ~~Lr~~F~~fG~I~~v~i~ 246 (327)
.+||++|+..|+|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999776554
No 176
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=47.46 E-value=6.4 Score=27.18 Aligned_cols=16 Identities=44% Similarity=0.970 Sum_probs=7.7
Q ss_pred hccccCCcccccCCcce
Q psy14139 19 TKEKYGKECKICARPFT 35 (327)
Q Consensus 19 ~k~~~g~eckic~rpft 35 (327)
++...| -|-+|.|||+
T Consensus 16 l~~~~~-~CPlC~r~l~ 31 (54)
T PF04423_consen 16 LKEAKG-CCPLCGRPLD 31 (54)
T ss_dssp HTT-SE-E-TTT--EE-
T ss_pred HhcCCC-cCCCCCCCCC
Confidence 334444 8999999995
No 177
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=46.01 E-value=13 Score=35.11 Aligned_cols=23 Identities=39% Similarity=0.979 Sum_probs=12.5
Q ss_pred ccccc-cccccCCCCCCCCCCCCC
Q psy14139 146 ICSFW-VKGECRRGEECPYRHEKP 168 (327)
Q Consensus 146 ~C~ff-~kG~C~rG~~Cpy~H~~p 168 (327)
-|.+| .+|.|..|..|+|.|..|
T Consensus 136 ~c~~Fs~~G~cs~g~~c~~~h~dp 159 (285)
T COG5084 136 PCRSFSLKGSCSSGPSCGYSHIDP 159 (285)
T ss_pred CcccccccceeccCCCCCccccCc
Confidence 45555 555555555555555543
No 178
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=42.94 E-value=7.6 Score=21.39 Aligned_cols=10 Identities=40% Similarity=1.321 Sum_probs=8.0
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|++.|+
T Consensus 2 ~C~~C~~~f~ 11 (23)
T PF00096_consen 2 KCPICGKSFS 11 (23)
T ss_dssp EETTTTEEES
T ss_pred CCCCCCCccC
Confidence 5888988884
No 179
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=42.22 E-value=12 Score=21.74 Aligned_cols=11 Identities=45% Similarity=1.099 Sum_probs=9.3
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
.+|.+|+|-|.
T Consensus 3 ~~C~~CgR~F~ 13 (25)
T PF13913_consen 3 VPCPICGRKFN 13 (25)
T ss_pred CcCCCCCCEEC
Confidence 47999999994
No 180
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=40.87 E-value=16 Score=24.96 Aligned_cols=31 Identities=39% Similarity=1.112 Sum_probs=23.9
Q ss_pred cccccCC-cceeEEecCCCCCcccchhhhhhhhcccCcccccccc
Q psy14139 26 ECKICAR-PFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLD 69 (327)
Q Consensus 26 eckic~r-pft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~ld 69 (327)
.|-.|.. |++=+||+ |..|.. =+.||.|-..
T Consensus 2 ~Cd~C~~~pi~g~Ryk------------C~~C~d-~DLC~~Cf~~ 33 (49)
T cd02334 2 KCNICKEFPITGFRYR------------CLKCFN-YDLCQSCFFS 33 (49)
T ss_pred CCCCCCCCCceeeeEE------------CCCCCC-cCchHHHHhC
Confidence 5889995 89888886 777764 6788888753
No 181
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=39.99 E-value=60 Score=25.06 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=35.7
Q ss_pred EEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCCCCC----CcccccccccCCCCCCCCCC
Q psy14139 252 AFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGE----DTAELKVRLEPVPGLPGALP 313 (327)
Q Consensus 252 aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~~~~----~~~~~~~~~~pv~Glp~~~p 313 (327)
|.|+|.+..-|++-++.--....+++..+.|+-..-...... ....+... ..+.|+|..++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rt-Vlvsgip~~l~ 65 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRT-VLVSGIPDVLD 65 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCE-EEEeCCCCCCC
Confidence 689999999999998742344567777776654433222211 01111111 24789887544
No 182
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=38.76 E-value=9 Score=25.60 Aligned_cols=33 Identities=27% Similarity=0.825 Sum_probs=20.7
Q ss_pred cCCcccccCC-cceeEEecCCCCCcccchhhhhhhhcccCccccccc
Q psy14139 23 YGKECKICAR-PFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLL 68 (327)
Q Consensus 23 ~g~eckic~r-pft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~l 68 (327)
.+-.|..|.. |++-+||+ |+.|.. -++|+.|..
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~------------C~~C~d-~dLC~~C~~ 36 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYH------------CLVCPD-YDLCEDCFS 36 (46)
T ss_dssp SSCE-SSS-SSSEESSEEE------------ESSSSS--EEEHHHHH
T ss_pred CCeECcCCCCCcCcCCeEE------------CCCCCC-CchhhHHHh
Confidence 4678999998 99888885 555542 456666643
No 183
>KOG4537|consensus
Probab=37.99 E-value=15 Score=31.25 Aligned_cols=22 Identities=32% Similarity=1.008 Sum_probs=17.9
Q ss_pred hhhhhhhhcc-------cCcccccccccC
Q psy14139 50 TEVCQTCARL-------KNVCQTCLLDLE 71 (327)
Q Consensus 50 t~ic~~ca~~-------kn~cq~c~ldl~ 71 (327)
-+||.+|.++ +--|-+|.+|++
T Consensus 40 de~Cp~C~~Ilm~dr~~~~~CVsC~~~~d 68 (178)
T KOG4537|consen 40 DEICPKCEKILMRDRDNPMFCVSCINDLD 68 (178)
T ss_pred hhhcchHHHHHHhhccCceEEEeeecccc
Confidence 4799999875 567999999984
No 184
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=37.23 E-value=1.2e+02 Score=22.78 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=41.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhh-cC-CeEEEEEec---CCCeEEEEeCCHHHHHHHHHH
Q psy14139 215 TLYVGNLGDKLTEQDLRDHFYQ-FG-EIRSVTILS---KQQCAFIQYTSRPAAEAAVEH 268 (327)
Q Consensus 215 tLfVgnLp~~ite~~Lr~~F~~-fG-~I~~v~i~~---~kg~aFV~F~~~~~Ae~A~~~ 268 (327)
+-|+..++...+..+|+..++. || .+.+|+.+. +..-|||++.....|...+..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 4566678899999999999987 66 577776554 345699999988888877654
No 185
>KOG3002|consensus
Probab=37.11 E-value=16 Score=34.69 Aligned_cols=41 Identities=24% Similarity=0.625 Sum_probs=31.7
Q ss_pred CcccccCCcceeEEecCCCCCcccchhhhhhhh-cccCccccccccc
Q psy14139 25 KECKICARPFTVFRWCPGARMRFKKTEVCQTCA-RLKNVCQTCLLDL 70 (327)
Q Consensus 25 ~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca-~~kn~cq~c~ldl 70 (327)
-||-||.-+.+. -...+-.=+.+|-+|. ++.|.|++|-|=+
T Consensus 49 leCPvC~~~l~~-----Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~ 90 (299)
T KOG3002|consen 49 LDCPVCFNPLSP-----PIFQCDNGHLACSSCRTKVSNKCPTCRLPI 90 (299)
T ss_pred ccCchhhccCcc-----cceecCCCcEehhhhhhhhcccCCcccccc
Confidence 589999988743 3334455589999999 9999999996543
No 186
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=37.02 E-value=25 Score=22.98 Aligned_cols=36 Identities=25% Similarity=0.718 Sum_probs=21.5
Q ss_pred cccccCCcceeEEecCCCCCccc--chhhhhhhhcccC----ccccc
Q psy14139 26 ECKICARPFTVFRWCPGARMRFK--KTEVCQTCARLKN----VCQTC 66 (327)
Q Consensus 26 eckic~rpft~f~w~~~~~~~~k--kt~ic~~ca~~kn----~cq~c 66 (327)
+|.||-++| .+....+.. --.+|..|+.... .|-.|
T Consensus 1 ~C~~C~~~~-----~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C 42 (44)
T PF14634_consen 1 HCNICFEKY-----SEERRPRLTSCGHIFCEKCLKKLKGKSVKCPIC 42 (44)
T ss_pred CCcCcCccc-----cCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCC
Confidence 689999998 222222211 2358888887766 55544
No 187
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=36.50 E-value=20 Score=21.44 Aligned_cols=29 Identities=21% Similarity=0.500 Sum_probs=17.5
Q ss_pred CCcccccCCcceeEEecCCCCCcccchhhhhhhhc
Q psy14139 24 GKECKICARPFTVFRWCPGARMRFKKTEVCQTCAR 58 (327)
Q Consensus 24 g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~ 58 (327)
|+.|..|..+++-..- --+.|.+|.+|.+
T Consensus 1 G~~C~rC~~~~~~~~~------~~r~~~~C~rCq~ 29 (30)
T PF06827_consen 1 GEKCPRCWNYIEDIGI------NGRSTYLCPRCQK 29 (30)
T ss_dssp TSB-TTT--BBEEEEE------TTEEEEE-TTTCC
T ss_pred CCcCccCCCcceEeEe------cCCCCeECcCCcC
Confidence 6788888888754443 2357899999975
No 188
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=35.62 E-value=1.2e+02 Score=23.17 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=41.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhh-cC-CeEEEEEec---CCCeEEEEeCCHHHHHHHHHH
Q psy14139 215 TLYVGNLGDKLTEQDLRDHFYQ-FG-EIRSVTILS---KQQCAFIQYTSRPAAEAAVEH 268 (327)
Q Consensus 215 tLfVgnLp~~ite~~Lr~~F~~-fG-~I~~v~i~~---~kg~aFV~F~~~~~Ae~A~~~ 268 (327)
+-|+.-++...+..++++.++. || .|.+|+.+. +..-|||++.....|...+..
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 4555667889999999999987 67 677777654 345699999998888887654
No 189
>KOG4676|consensus
Probab=35.50 E-value=5.4 Score=38.93 Aligned_cols=76 Identities=12% Similarity=0.071 Sum_probs=59.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCCC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS--KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~--~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~~ 291 (327)
++++|++|+..+-..++-+.|..+|++...++.. ...++-|.|....+...|+.. +|..+.-+..++..-+|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~--~gre~k~qhsr~ai~kP~kK~ 229 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS--HGRERKRQHSRRAIIKPHKKR 229 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh--cchhhhhhhhhhhhcCccccc
Confidence 6899999999999999999999999988776654 345556999999999999884 777776555555555665543
No 190
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=34.76 E-value=9.8 Score=27.76 Aligned_cols=17 Identities=53% Similarity=1.239 Sum_probs=13.8
Q ss_pred hhhhhhhhcccCcccccccccC
Q psy14139 50 TEVCQTCARLKNVCQTCLLDLE 71 (327)
Q Consensus 50 t~ic~~ca~~kn~cq~c~ldl~ 71 (327)
|.+|.||. ||+||+|-.
T Consensus 3 ~~vCPtC~-----~~~~~~d~~ 19 (69)
T PF13746_consen 3 TYVCPTCR-----CQSCMFDDD 19 (69)
T ss_pred eEECCCCe-----EEEEEEcCC
Confidence 56899998 998888865
No 191
>KOG1074|consensus
Probab=34.73 E-value=14 Score=39.55 Aligned_cols=11 Identities=64% Similarity=1.404 Sum_probs=9.8
Q ss_pred cccccCCccee
Q psy14139 26 ECKICARPFTV 36 (327)
Q Consensus 26 eckic~rpft~ 36 (327)
.||||+|-||.
T Consensus 635 kCKiCgRAFtT 645 (958)
T KOG1074|consen 635 KCKICGRAFTT 645 (958)
T ss_pred ccccccchhcc
Confidence 59999999984
No 192
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=33.47 E-value=97 Score=23.17 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=30.0
Q ss_pred CCcHHHHHHHhhhcCC----CCCccccHHHHHHHHHHhhhcCCCCCCccccCCCcChHHHHHHHhhc
Q psy14139 73 GLPIQVRDTALKIKDD----IPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLART 135 (327)
Q Consensus 73 ~lp~~~rd~~l~~~~~----~p~s~~n~ey~~~~~e~~l~~~~~~~~~~~~g~~~~~~~~l~kl~~~ 135 (327)
.-|++|||++|..+-. ..-|..|-+.|-.-++.-- ..++++|+.|.-.
T Consensus 15 AT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~ia---------------A~areLLDaLet~ 66 (88)
T COG5552 15 ATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEIA---------------ATARELLDALETR 66 (88)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH---------------HHHHHHHHhcccc
Confidence 5689999999987632 2235666666654443221 2467788877643
No 193
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=33.47 E-value=40 Score=22.88 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=25.6
Q ss_pred cccccCCcceeEEecCCCCCcccchhhhhhhhcccCcc
Q psy14139 26 ECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVC 63 (327)
Q Consensus 26 eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~kn~c 63 (327)
-|..|+.+++...|+ +.. .-..|.+..+.++-|
T Consensus 7 ~C~~CG~~m~~~~~~-~~~----~yy~C~~~~~~~~~C 39 (58)
T PF13408_consen 7 RCGHCGSKMTRRKRK-GKY----RYYRCSNRRRKGKGC 39 (58)
T ss_pred EcccCCcEeEEEECC-CCc----eEEEcCCCcCCCCCC
Confidence 499999999998887 221 458899998888635
No 194
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=32.87 E-value=27 Score=23.67 Aligned_cols=31 Identities=29% Similarity=0.722 Sum_probs=23.7
Q ss_pred cccccC-CcceeEEecCCCCCcccchhhhhhhhcccCcccccccc
Q psy14139 26 ECKICA-RPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLD 69 (327)
Q Consensus 26 eckic~-rpft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~ld 69 (327)
.|..|. .|++-+||+ |..|.. =++|+.|...
T Consensus 2 ~C~~C~~~~i~g~R~~------------C~~C~d-~dlC~~Cf~~ 33 (49)
T cd02338 2 SCDGCGKSNFTGRRYK------------CLICYD-YDLCADCYDS 33 (49)
T ss_pred CCCCCcCCCcEEeeEE------------eCCCCC-CccchhHHhC
Confidence 488999 899988885 677764 5788888753
No 195
>KOG3049|consensus
Probab=32.29 E-value=25 Score=31.72 Aligned_cols=12 Identities=33% Similarity=1.077 Sum_probs=10.0
Q ss_pred cceeEEecCCCC
Q psy14139 33 PFTVFRWCPGAR 44 (327)
Q Consensus 33 pft~f~w~~~~~ 44 (327)
-|.+|||+|.+.
T Consensus 48 tFeIYRwnPd~p 59 (288)
T KOG3049|consen 48 TFEIYRWNPDNP 59 (288)
T ss_pred eEEEEecCCCCC
Confidence 499999999654
No 196
>KOG3476|consensus
Probab=31.42 E-value=13 Score=28.60 Aligned_cols=35 Identities=43% Similarity=1.009 Sum_probs=25.5
Q ss_pred ccC---CcccccCCcceeEEecCCCCCcccchhhhhhhhcccCcccccc
Q psy14139 22 KYG---KECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCL 67 (327)
Q Consensus 22 ~~g---~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~ 67 (327)
++| ..|+||-.-- -+||. . -|||||=.|-+|--|-
T Consensus 49 p~gt~~~kC~iCk~~v----HQ~Gs--h-----YC~tCAY~KgiCAMCG 86 (100)
T KOG3476|consen 49 PYGTALAKCRICKQLV----HQPGS--H-----YCQTCAYKKGICAMCG 86 (100)
T ss_pred ccccccchhHHHHHHh----cCCcc--h-----hHhHhhhhhhHHHHhh
Confidence 577 8899996543 23332 3 5999999999998884
No 197
>KOG4483|consensus
Probab=31.08 E-value=95 Score=30.72 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=43.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCe-EEEEEecCCCeEEEEeCCHHHHHHHHH
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEI-RSVTILSKQQCAFIQYTSRPAAEAAVE 267 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I-~~v~i~~~kg~aFV~F~~~~~Ae~A~~ 267 (327)
.-|-|.++|...-.+||...|+.||.- -.|.++ +...||-.|.+...|..|+.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWv-DdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV-DDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEe-ecceeEEeecchHHHHHHhh
Confidence 567889999998889999999999753 455555 45679999999999988876
No 198
>KOG1492|consensus
Probab=30.71 E-value=22 Score=32.12 Aligned_cols=24 Identities=29% Similarity=0.913 Sum_probs=21.4
Q ss_pred Cccccccc-cccccCCCCCCCCCCC
Q psy14139 143 RPHICSFW-VKGECRRGEECPYRHE 166 (327)
Q Consensus 143 ~~~~C~ff-~kG~C~rG~~Cpy~H~ 166 (327)
.+..|.+| +.|.|-.|++|.|-|+
T Consensus 205 savycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 205 SAVYCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred ceeEEEEecCCCcccCCceeeeecc
Confidence 35789999 8899999999999997
No 199
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=30.66 E-value=20 Score=27.78 Aligned_cols=37 Identities=38% Similarity=0.818 Sum_probs=25.1
Q ss_pred ccccC---CcccccCCcceeEEecCCCCCcccchhhhhhhhcccCcccccc
Q psy14139 20 KEKYG---KECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCL 67 (327)
Q Consensus 20 k~~~g---~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~ 67 (327)
+.+|+ ..|+||-.-- .. .----||+||=.|++|--|=
T Consensus 37 ~nPy~~~~~~C~~CK~~v-------~q----~g~~YCq~CAYkkGiCamCG 76 (90)
T PF10235_consen 37 KNPYAPYSSKCKICKTKV-------HQ----PGAKYCQTCAYKKGICAMCG 76 (90)
T ss_pred cCcccccCcccccccccc-------cc----CCCccChhhhcccCcccccC
Confidence 34555 4899997543 11 11134999999999999883
No 200
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=30.56 E-value=16 Score=21.12 Aligned_cols=11 Identities=27% Similarity=0.996 Sum_probs=9.2
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
=+|.+|.+.|+
T Consensus 15 ~~C~~C~k~F~ 25 (26)
T PF13465_consen 15 YKCPYCGKSFS 25 (26)
T ss_dssp EEESSSSEEES
T ss_pred CCCCCCcCeeC
Confidence 47999999884
No 201
>PF13790 DUF4182: Domain of unknown function (DUF4182)
Probab=29.91 E-value=13 Score=24.06 Aligned_cols=7 Identities=71% Similarity=1.360 Sum_probs=3.0
Q ss_pred hhhhhhh
Q psy14139 50 TEVCQTC 56 (327)
Q Consensus 50 t~ic~~c 56 (327)
|+|||.|
T Consensus 3 tIvCq~C 9 (38)
T PF13790_consen 3 TIVCQHC 9 (38)
T ss_pred EEEeccc
Confidence 3444444
No 202
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=29.22 E-value=25 Score=37.60 Aligned_cols=63 Identities=21% Similarity=0.410 Sum_probs=43.2
Q ss_pred CCcccccCCcceeEEecCC---CCCcccchhhhhhhhccc--------------------CcccccccccCCCCcHHHHH
Q psy14139 24 GKECKICARPFTVFRWCPG---ARMRFKKTEVCQTCARLK--------------------NVCQTCLLDLEYGLPIQVRD 80 (327)
Q Consensus 24 g~eckic~rpft~f~w~~~---~~~~~kkt~ic~~ca~~k--------------------n~cq~c~ldl~~~lp~~~rd 80 (327)
...|..|.++|+.+.=..+ .+-|.=--++|..|+.-+ -||+.|.-|++-.+-.++-+
T Consensus 460 SdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq~EnLlQm~LLc 539 (1374)
T PTZ00303 460 SDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKEYETVSQLHYLG 539 (1374)
T ss_pred CCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHHHHhHHhhHHHH
Confidence 3579999999976511011 224444567899998533 49999998888777777777
Q ss_pred HHhhhc
Q psy14139 81 TALKIK 86 (327)
Q Consensus 81 ~~l~~~ 86 (327)
+.+.+.
T Consensus 540 alf~la 545 (1374)
T PTZ00303 540 ALFAFA 545 (1374)
T ss_pred HHHHHc
Confidence 766544
No 203
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=26.16 E-value=37 Score=26.24 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=21.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHh
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFY 235 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~ 235 (327)
..+.+++.|.|||..++|++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34558999999999999999998653
No 204
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=26.02 E-value=2.2e+02 Score=19.37 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=42.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCH----HHHHHHHHH
Q psy14139 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSR----PAAEAAVEH 268 (327)
Q Consensus 215 tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~----~~Ae~A~~~ 268 (327)
||.|.|+.-.--...+++.+...-.|.++.+....+-+-|.|... +...++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 567777777777788999999998899999999889999999854 455555553
No 205
>KOG2891|consensus
Probab=25.98 E-value=86 Score=29.49 Aligned_cols=33 Identities=39% Similarity=0.554 Sum_probs=26.7
Q ss_pred cEEEEcCCCCC------------CCHHHHHHHHhhcCCeEEEEEe
Q psy14139 214 TTLYVGNLGDK------------LTEQDLRDHFYQFGEIRSVTIL 246 (327)
Q Consensus 214 ~tLfVgnLp~~------------ite~~Lr~~F~~fG~I~~v~i~ 246 (327)
.|+|+.+||-. -+|+-|+..|..||+|..|.|.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 47888888742 4578899999999999998875
No 206
>KOG2500|consensus
Probab=25.87 E-value=1.1e+02 Score=27.84 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=7.8
Q ss_pred CCeeEEEEecc
Q psy14139 276 GGRRLNIKWGR 286 (327)
Q Consensus 276 ~G~~L~V~~ak 286 (327)
.|+.|++....
T Consensus 154 EGeTIkinikn 164 (253)
T KOG2500|consen 154 EGETIKINIKN 164 (253)
T ss_pred CCcEEEEEeec
Confidence 47778877764
No 207
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=25.76 E-value=42 Score=22.71 Aligned_cols=30 Identities=27% Similarity=0.819 Sum_probs=22.8
Q ss_pred cccccCC-cceeEEecCCCCCcccchhhhhhhhcccCccccccc
Q psy14139 26 ECKICAR-PFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLL 68 (327)
Q Consensus 26 eckic~r-pft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~l 68 (327)
.|..|.+ |++=+||+ |..|.. =++|+.|..
T Consensus 2 ~C~~C~~~~i~g~R~~------------C~~C~d-ydLC~~Cf~ 32 (49)
T cd02345 2 SCSACRKQDISGIRFP------------CQVCRD-YSLCLGCYT 32 (49)
T ss_pred cCCCCCCCCceEeeEE------------CCCCCC-cCchHHHHh
Confidence 4889999 99888885 666654 567888865
No 208
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=25.17 E-value=47 Score=31.34 Aligned_cols=27 Identities=30% Similarity=0.867 Sum_probs=24.2
Q ss_pred CCccccccccccccCCCCCCCCCCCCC
Q psy14139 142 NRPHICSFWVKGECRRGEECPYRHEKP 168 (327)
Q Consensus 142 ~~~~~C~ff~kG~C~rG~~Cpy~H~~p 168 (327)
.+.-+|.||..|-|..+..|.|.|+.+
T Consensus 102 ~s~V~c~~~~~g~c~s~~~c~~lh~~d 128 (285)
T COG5084 102 SSSVVCKFFLRGLCKSGFSCEFLHEYD 128 (285)
T ss_pred cCCcccchhccccCcCCCccccccCCC
Confidence 467899999999999999999999854
No 209
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=24.84 E-value=31 Score=26.86 Aligned_cols=17 Identities=35% Similarity=0.942 Sum_probs=15.3
Q ss_pred hhhhhhhcccCcccccc
Q psy14139 51 EVCQTCARLKNVCQTCL 67 (327)
Q Consensus 51 ~ic~~ca~~kn~cq~c~ 67 (327)
.||+.||....||--|.
T Consensus 72 ~iC~~Ca~~~~vCaKC~ 88 (92)
T PF10217_consen 72 VICDPCAKELKVCAKCG 88 (92)
T ss_pred HHHHHHHHhhccCcccC
Confidence 59999999999998875
No 210
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=24.05 E-value=24 Score=19.69 Aligned_cols=10 Identities=40% Similarity=1.202 Sum_probs=6.9
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
.|+||.+-|+
T Consensus 2 ~C~~C~~~f~ 11 (25)
T PF12874_consen 2 YCDICNKSFS 11 (25)
T ss_dssp EETTTTEEES
T ss_pred CCCCCCCCcC
Confidence 4777777763
No 211
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=23.72 E-value=42 Score=30.75 Aligned_cols=25 Identities=24% Similarity=0.935 Sum_probs=22.6
Q ss_pred CccccccccccccCCCCCCCCCCCC
Q psy14139 143 RPHICSFWVKGECRRGEECPYRHEK 167 (327)
Q Consensus 143 ~~~~C~ff~kG~C~rG~~Cpy~H~~ 167 (327)
+..+|..|..+.|+.|+.|.|.|.+
T Consensus 84 K~~vcalF~~~~c~kg~~ckF~h~~ 108 (299)
T COG5252 84 KTVVCALFLNKTCAKGDACKFAHGK 108 (299)
T ss_pred hhHHHHHhccCccccCchhhhhcch
Confidence 4689999999999999999999964
No 212
>KOG1813|consensus
Probab=23.03 E-value=28 Score=32.83 Aligned_cols=24 Identities=33% Similarity=0.937 Sum_probs=21.8
Q ss_pred Cccccccc-cccccCCCCCCCCCCC
Q psy14139 143 RPHICSFW-VKGECRRGEECPYRHE 166 (327)
Q Consensus 143 ~~~~C~ff-~kG~C~rG~~Cpy~H~ 166 (327)
.|-+|-.| ..|+|..|+.|.|.|.
T Consensus 185 qpDicKdykeTgycg~gdSckFlh~ 209 (313)
T KOG1813|consen 185 QPDICKDYKETGYCGYGDSCKFLHD 209 (313)
T ss_pred CchhhhhhHhhCcccccchhhhhhh
Confidence 47899999 8899999999999995
No 213
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.02 E-value=1.3e+02 Score=28.20 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=22.2
Q ss_pred EEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 252 AFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 252 aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
|||+|++..+|..|++.. ... .+..++|..|-.
T Consensus 1 aFVtF~~~~~a~~~~q~~-~~~--~~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLL-LSK--RPNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHH-hcC--CCCCceEeeCCC
Confidence 799999999999999853 221 234445554443
Done!