Query psy14139
Match_columns 327
No_of_seqs 364 out of 1683
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 20:30:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1l_A PRE-mRNA-splicing facto 100.0 1.6E-29 5.5E-34 229.4 5.9 149 134-290 60-231 (240)
2 4fxv_A ELAV-like protein 1; RN 99.7 7.7E-18 2.6E-22 132.3 10.5 75 212-287 18-98 (99)
3 1sjq_A Polypyrimidine tract-bi 99.7 9.2E-18 3.1E-22 133.4 10.9 82 211-292 14-96 (105)
4 2ytc_A PRE-mRNA-splicing facto 99.7 1.8E-17 6.2E-22 125.5 11.2 80 207-286 6-85 (85)
5 4f25_A Polyadenylate-binding p 99.7 1.8E-17 6.1E-22 133.5 10.6 79 213-292 5-87 (115)
6 1why_A Hypothetical protein ri 99.7 5.2E-17 1.8E-21 126.4 12.0 81 210-291 14-96 (97)
7 2cq1_A PTB-like protein L; RRM 99.7 1.2E-16 4.1E-21 126.2 13.1 82 211-292 13-95 (101)
8 2lxi_A RNA-binding protein 10; 99.7 2.1E-17 7.3E-22 127.7 8.3 79 214-292 2-87 (91)
9 2cqi_A Nucleolysin TIAR; RNA r 99.7 3E-16 1E-20 123.3 14.2 83 209-292 11-97 (103)
10 1x4g_A Nucleolysin TIAR; struc 99.7 1.4E-16 4.7E-21 126.7 12.3 81 211-292 23-103 (109)
11 2dnq_A RNA-binding protein 4B; 99.7 1.4E-16 4.9E-21 122.1 11.8 80 210-292 5-84 (90)
12 2cq3_A RNA-binding protein 9; 99.7 3.2E-16 1.1E-20 123.1 14.0 83 209-292 11-97 (103)
13 1whw_A Hypothetical protein ri 99.7 2.2E-16 7.7E-21 123.0 12.8 82 210-292 5-92 (99)
14 2la4_A Nuclear and cytoplasmic 99.7 6.5E-17 2.2E-21 126.6 9.5 77 211-288 25-101 (101)
15 2do4_A Squamous cell carcinoma 99.7 2.3E-16 7.7E-21 123.3 12.6 82 209-291 13-99 (100)
16 2dgx_A KIAA0430 protein; RRM d 99.7 2.7E-16 9.2E-21 122.3 12.9 79 212-291 8-93 (96)
17 2cph_A RNA binding motif prote 99.7 1.8E-16 6.2E-21 125.1 12.0 84 208-292 10-101 (107)
18 2dgu_A Heterogeneous nuclear r 99.7 4E-16 1.4E-20 122.7 13.9 81 210-293 8-88 (103)
19 2hvz_A Splicing factor, argini 99.7 8.3E-17 2.8E-21 126.0 9.7 77 214-291 1-78 (101)
20 1wex_A Hypothetical protein (r 99.7 1.7E-16 5.7E-21 126.0 11.5 82 210-291 12-94 (104)
21 3r27_A HnRNP L, heterogeneous 99.7 1.4E-16 4.7E-21 125.5 10.9 78 211-289 19-98 (100)
22 2dgt_A RNA-binding protein 30; 99.7 3.7E-16 1.3E-20 120.3 13.1 80 209-291 6-85 (92)
23 2dgo_A Cytotoxic granule-assoc 99.7 5E-16 1.7E-20 124.4 14.3 84 209-293 11-100 (115)
24 3md1_A Nuclear and cytoplasmic 99.7 1.6E-16 5.6E-21 119.5 10.6 75 214-289 2-82 (83)
25 1x4c_A Splicing factor, argini 99.7 4.6E-16 1.6E-20 123.6 13.5 83 208-292 10-97 (108)
26 2cpj_A Non-POU domain-containi 99.7 2.1E-16 7.3E-21 123.3 11.3 80 211-291 13-92 (99)
27 2wbr_A GW182, gawky, LD47780P; 99.7 2.2E-16 7.6E-21 120.9 10.9 74 212-286 6-79 (89)
28 2ad9_A Polypyrimidine tract-bi 99.7 1.3E-16 4.6E-21 129.6 10.3 81 211-292 29-111 (119)
29 1x4d_A Matrin 3; structural ge 99.7 1.4E-16 4.8E-21 126.0 9.9 78 212-290 14-94 (102)
30 2dnh_A Bruno-like 5, RNA bindi 99.7 3.2E-16 1.1E-20 123.4 12.0 81 211-292 13-101 (105)
31 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.1E-16 7.3E-21 120.0 10.1 77 212-289 5-87 (87)
32 1p27_B RNA-binding protein 8A; 99.7 2E-16 6.7E-21 124.8 10.0 80 210-290 20-105 (106)
33 2dnp_A RNA-binding protein 14; 99.7 5.4E-16 1.8E-20 118.9 12.0 80 210-292 6-85 (90)
34 1x5t_A Splicing factor 3B subu 99.7 2.8E-16 9.7E-21 121.6 10.5 81 212-293 4-91 (96)
35 1oo0_B CG8781-PA, drosophila Y 99.7 3.6E-16 1.2E-20 124.2 11.3 83 208-291 21-109 (110)
36 2jvo_A Nucleolar protein 3; nu 99.7 2.9E-16 9.9E-21 125.1 10.7 80 209-291 27-106 (108)
37 1x5u_A Splicing factor 3B subu 99.7 6.2E-16 2.1E-20 121.7 12.3 83 209-292 11-99 (105)
38 2cqh_A IGF-II mRNA-binding pro 99.7 1.9E-16 6.4E-21 122.1 9.1 81 210-292 5-87 (93)
39 2dgs_A DAZ-associated protein 99.7 6.1E-16 2.1E-20 120.6 12.1 82 209-292 6-93 (99)
40 2dgv_A HnRNP M, heterogeneous 99.7 2.7E-16 9.2E-21 120.8 9.9 81 210-291 5-89 (92)
41 2fy1_A RNA-binding motif prote 99.7 7.2E-16 2.5E-20 124.3 12.8 81 211-292 5-90 (116)
42 1x4a_A Splicing factor, argini 99.7 1E-15 3.5E-20 121.5 13.5 84 208-292 17-103 (109)
43 2dnz_A Probable RNA-binding pr 99.7 5.2E-16 1.8E-20 119.8 11.4 80 212-292 4-89 (95)
44 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.6E-16 1.6E-20 121.9 11.1 81 211-292 10-96 (102)
45 2d9p_A Polyadenylate-binding p 99.7 4E-16 1.4E-20 122.5 10.8 82 210-292 12-97 (103)
46 2dnm_A SRP46 splicing factor; 99.7 3.2E-16 1.1E-20 123.1 10.2 84 208-292 8-97 (103)
47 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.5E-16 1.6E-20 117.6 10.6 75 211-286 5-85 (85)
48 2cpz_A CUG triplet repeat RNA- 99.7 6.1E-16 2.1E-20 124.0 11.9 82 210-292 22-109 (115)
49 2cq0_A Eukaryotic translation 99.7 6.4E-16 2.2E-20 121.4 11.8 82 210-292 12-99 (103)
50 2cpf_A RNA binding motif prote 99.7 5.2E-16 1.8E-20 120.7 11.2 80 212-292 4-92 (98)
51 1x4h_A RNA-binding protein 28; 99.7 9.2E-16 3.1E-20 121.8 12.7 83 209-292 11-105 (111)
52 4a8x_A RNA-binding protein wit 99.7 5E-16 1.7E-20 118.0 10.7 77 213-290 4-87 (88)
53 2e5h_A Zinc finger CCHC-type a 99.7 9.8E-16 3.4E-20 118.1 12.2 77 209-286 12-94 (94)
54 2x1f_A MRNA 3'-END-processing 99.7 6.1E-16 2.1E-20 120.0 11.0 78 213-291 2-85 (96)
55 2err_A Ataxin-2-binding protei 99.7 3.8E-16 1.3E-20 124.4 10.2 80 209-289 25-108 (109)
56 2a3j_A U1 small nuclear ribonu 99.7 4.5E-16 1.5E-20 127.9 10.7 81 209-290 25-112 (127)
57 1sjr_A Polypyrimidine tract-bi 99.7 9.4E-16 3.2E-20 131.0 13.1 86 205-291 38-127 (164)
58 2cpe_A RNA-binding protein EWS 99.7 6.6E-16 2.2E-20 123.3 11.4 84 208-292 10-107 (113)
59 1u6f_A Tcubp1, RNA-binding pro 99.7 8.8E-16 3E-20 127.0 12.4 85 208-293 37-127 (139)
60 2xnq_A Nuclear polyadenylated 99.7 8.5E-16 2.9E-20 119.9 11.6 77 210-289 19-96 (97)
61 3s8s_A Histone-lysine N-methyl 99.7 6.2E-16 2.1E-20 123.8 10.8 77 212-289 5-87 (110)
62 1nu4_A U1A RNA binding domain; 99.7 5.4E-16 1.9E-20 120.2 10.1 81 209-290 4-91 (97)
63 1x5p_A Negative elongation fac 99.6 2.8E-15 9.7E-20 116.5 14.1 79 211-292 13-91 (97)
64 1whx_A Hypothetical protein ri 99.6 3E-16 1E-20 125.6 8.7 80 210-290 7-86 (111)
65 2cpd_A Apobec-1 stimulating pr 99.6 2.7E-15 9.3E-20 117.0 13.9 78 211-291 13-92 (99)
66 1p1t_A Cleavage stimulation fa 99.6 1.5E-16 5.2E-21 125.0 6.7 83 208-291 3-91 (104)
67 2lkz_A RNA-binding protein 5; 99.6 2.9E-16 9.7E-21 122.6 8.1 79 208-287 4-94 (95)
68 2cqd_A RNA-binding region cont 99.6 3.7E-15 1.3E-19 119.6 14.8 81 208-290 12-98 (116)
69 2ywk_A Putative RNA-binding pr 99.6 7.1E-16 2.4E-20 119.1 10.1 78 209-287 12-94 (95)
70 1x5s_A Cold-inducible RNA-bind 99.6 8.2E-16 2.8E-20 120.4 10.5 81 211-292 10-96 (102)
71 2dgp_A Bruno-like 4, RNA bindi 99.6 9.5E-16 3.3E-20 120.9 10.9 83 209-292 9-100 (106)
72 3ex7_B RNA-binding protein 8A; 99.6 8.1E-16 2.8E-20 125.1 10.4 83 209-292 18-106 (126)
73 2do0_A HnRNP M, heterogeneous 99.6 2.4E-15 8.1E-20 120.1 12.9 82 210-292 12-98 (114)
74 2cqc_A Arginine/serine-rich sp 99.6 1.9E-15 6.4E-20 116.6 11.9 77 210-287 12-94 (95)
75 1x4f_A Matrin 3; structural ge 99.6 3.8E-16 1.3E-20 125.5 8.1 79 212-290 24-104 (112)
76 2div_A TRNA selenocysteine ass 99.6 1.3E-15 4.4E-20 118.7 10.8 79 211-290 7-96 (99)
77 1wf1_A RNA-binding protein RAL 99.6 1.3E-15 4.3E-20 121.2 10.6 77 212-291 26-103 (110)
78 3ucg_A Polyadenylate-binding p 99.6 1.6E-15 5.5E-20 115.5 10.7 76 212-289 5-86 (89)
79 2bz2_A Negative elongation fac 99.6 8.4E-16 2.9E-20 125.1 9.5 101 175-291 14-114 (121)
80 2dhg_A TRNA selenocysteine ass 99.6 8.7E-16 3E-20 120.7 9.2 82 210-292 6-94 (104)
81 2khc_A Testis-specific RNP-typ 99.6 6.6E-16 2.3E-20 124.2 8.7 77 209-286 36-118 (118)
82 2jrs_A RNA-binding protein 39; 99.6 9.3E-16 3.2E-20 122.1 9.4 79 210-289 23-107 (108)
83 2kvi_A Nuclear polyadenylated 99.6 6.6E-16 2.3E-20 120.0 8.2 79 211-292 8-87 (96)
84 1wi8_A EIF-4B, eukaryotic tran 99.6 3.3E-15 1.1E-19 117.5 12.3 79 211-292 13-98 (104)
85 2la6_A RNA-binding protein FUS 99.6 1.5E-15 5.2E-20 118.4 9.8 77 209-286 9-99 (99)
86 3s7r_A Heterogeneous nuclear r 99.6 2.4E-15 8.2E-20 114.3 10.7 75 209-285 7-87 (87)
87 2dh8_A DAZ-associated protein 99.6 1.8E-15 6.1E-20 119.2 10.1 83 208-292 11-99 (105)
88 2i2y_A Fusion protein consists 99.6 1.7E-15 5.8E-20 127.1 10.6 79 210-289 70-149 (150)
89 2cq2_A Hypothetical protein LO 99.6 2E-15 6.8E-20 121.6 10.3 79 212-291 24-109 (114)
90 2jvr_A Nucleolar protein 3; RN 99.6 2E-15 6.8E-20 121.2 10.1 77 212-289 27-106 (111)
91 3ulh_A THO complex subunit 4; 99.6 2.8E-15 9.7E-20 118.3 10.9 76 210-286 26-106 (107)
92 2dis_A Unnamed protein product 99.6 3.8E-15 1.3E-19 118.0 11.4 79 212-291 7-95 (109)
93 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.8E-15 1.3E-19 125.8 12.1 80 211-291 37-122 (156)
94 2rs2_A Musashi-1, RNA-binding 99.6 4.1E-15 1.4E-19 118.5 11.4 81 210-292 22-108 (109)
95 2e5j_A Methenyltetrahydrofolat 99.6 4.1E-15 1.4E-19 115.6 10.6 78 211-290 17-96 (97)
96 2kxn_B Transformer-2 protein h 99.6 1.8E-15 6.1E-20 124.4 9.0 80 210-290 43-128 (129)
97 1s79_A Lupus LA protein; RRM, 99.6 2E-15 6.9E-20 119.4 8.7 77 209-287 7-88 (103)
98 2dng_A Eukaryotic translation 99.6 9.2E-15 3.2E-19 114.7 12.3 80 210-292 12-97 (103)
99 2cpi_A CCR4-NOT transcription 99.6 3.8E-15 1.3E-19 118.9 10.2 79 211-290 13-103 (111)
100 3p5t_L Cleavage and polyadenyl 99.6 4.9E-16 1.7E-20 119.3 4.7 77 214-291 2-86 (90)
101 2dgw_A Probable RNA-binding pr 99.6 8.9E-15 3.1E-19 112.1 11.8 79 210-291 7-90 (91)
102 2fc9_A NCL protein; structure 99.6 7E-15 2.4E-19 114.9 11.4 79 209-291 11-94 (101)
103 2jwn_A Embryonic polyadenylate 99.6 3.7E-15 1.3E-19 120.8 10.0 78 212-291 35-118 (124)
104 2cqg_A TDP-43, TAR DNA-binding 99.6 2.3E-14 7.8E-19 112.4 14.0 81 209-292 11-97 (103)
105 1x4b_A Heterogeneous nuclear r 99.6 6.8E-15 2.3E-19 118.0 11.0 81 211-293 25-111 (116)
106 2e5i_A Heterogeneous nuclear r 99.6 1.4E-14 4.9E-19 118.4 13.1 79 212-291 24-105 (124)
107 2kn4_A Immunoglobulin G-bindin 99.6 1E-14 3.4E-19 123.1 12.5 81 210-291 67-153 (158)
108 2cqp_A RNA-binding protein 12; 99.6 3.8E-15 1.3E-19 115.7 9.0 79 210-289 12-96 (98)
109 2nlw_A Eukaryotic translation 99.6 6.5E-15 2.2E-19 116.4 10.3 78 211-289 13-101 (105)
110 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.1E-15 2.1E-19 125.9 10.9 82 210-292 69-156 (165)
111 1x5o_A RNA binding motif, sing 99.6 4.6E-15 1.6E-19 118.5 9.5 80 209-289 21-113 (114)
112 2kt5_A RNA and export factor-b 99.6 1.1E-14 3.9E-19 118.1 11.9 78 211-289 33-115 (124)
113 1wg1_A KIAA1579 protein, homol 99.6 4.7E-15 1.6E-19 113.3 9.0 76 212-289 4-79 (88)
114 3ns6_A Eukaryotic translation 99.6 1.6E-15 5.5E-20 118.9 6.6 77 212-289 5-94 (100)
115 1fjc_A Nucleolin RBD2, protein 99.6 7.4E-15 2.5E-19 113.6 10.2 82 209-291 12-94 (96)
116 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.5E-15 5.1E-20 118.9 6.3 77 210-289 16-99 (100)
117 2lea_A Serine/arginine-rich sp 99.6 2E-15 6.9E-20 125.0 7.3 85 207-292 41-131 (135)
118 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.2E-14 4.1E-19 119.8 11.6 75 210-285 60-140 (140)
119 3lqv_A PRE-mRNA branch site pr 99.6 8.7E-15 3E-19 117.1 10.2 79 212-291 7-88 (115)
120 3d2w_A TAR DNA-binding protein 99.6 7.7E-15 2.6E-19 112.8 9.5 77 211-290 9-86 (89)
121 2cq4_A RNA binding motif prote 99.6 2.6E-15 8.9E-20 120.1 6.7 80 210-291 22-107 (114)
122 3beg_B Splicing factor, argini 99.6 5.3E-15 1.8E-19 118.9 8.4 81 208-290 11-96 (115)
123 1x4e_A RNA binding motif, sing 99.6 1.4E-15 4.7E-20 115.2 4.5 75 212-287 4-84 (85)
124 2cpx_A Hypothetical protein FL 99.6 1.3E-14 4.3E-19 116.0 10.2 80 212-292 24-109 (115)
125 2ki2_A SS-DNA binding protein 99.6 1.4E-15 4.8E-20 116.3 4.4 76 214-291 2-83 (90)
126 2e5g_A U6 snRNA-specific termi 99.6 2.2E-14 7.4E-19 110.8 11.1 79 211-291 6-85 (94)
127 2e44_A Insulin-like growth fac 99.6 2E-14 6.7E-19 111.2 10.7 79 210-289 12-93 (96)
128 3n9u_C Cleavage and polyadenyl 99.6 1E-14 3.5E-19 123.9 9.7 77 212-289 54-138 (156)
129 3zzy_A Polypyrimidine tract-bi 99.6 3.6E-14 1.2E-18 116.8 12.4 80 211-291 26-109 (130)
130 2hzc_A Splicing factor U2AF 65 99.6 2E-14 6.8E-19 108.9 9.9 72 211-284 4-86 (87)
131 2m2b_A RNA-binding protein 10; 99.5 9.4E-15 3.2E-19 120.0 8.4 81 209-291 19-111 (131)
132 1wf0_A TDP-43, TAR DNA-binding 99.5 1.1E-14 3.6E-19 111.1 8.0 77 213-292 5-82 (88)
133 1uaw_A Mouse-musashi-1; RNP-ty 99.5 4.8E-15 1.7E-19 109.8 5.7 70 214-285 1-76 (77)
134 2fc8_A NCL protein; structure 99.5 2.6E-14 8.8E-19 111.8 10.1 80 210-293 12-97 (102)
135 2mss_A Protein (musashi1); RNA 99.5 6.4E-15 2.2E-19 108.8 6.1 69 215-285 1-75 (75)
136 1fxl_A Paraneoplastic encephal 99.5 4.9E-14 1.7E-18 118.3 11.7 91 213-310 2-98 (167)
137 2ek1_A RNA-binding protein 12; 99.5 8.7E-15 3E-19 112.9 6.1 75 212-287 14-94 (95)
138 2krb_A Eukaryotic translation 99.5 1.5E-14 5.1E-19 108.7 6.5 68 214-282 2-80 (81)
139 3egn_A RNA-binding protein 40; 99.5 3.2E-14 1.1E-18 118.3 9.1 81 211-292 43-134 (143)
140 2cpy_A RNA-binding protein 12; 99.5 2.5E-14 8.6E-19 114.6 8.1 77 211-289 13-95 (114)
141 2lcw_A RNA-binding protein FUS 99.3 1E-15 3.6E-20 122.9 0.0 81 211-292 5-99 (116)
142 1fj7_A Nucleolin RBD1, protein 99.5 6.1E-14 2.1E-18 109.5 10.0 78 211-291 15-98 (101)
143 3tyt_A Heterogeneous nuclear r 99.5 6.7E-14 2.3E-18 123.8 11.3 77 212-289 3-81 (205)
144 1iqt_A AUF1, heterogeneous nuc 99.5 1.1E-14 3.8E-19 107.4 5.2 69 215-285 1-75 (75)
145 1b7f_A Protein (SXL-lethal pro 99.5 8.3E-14 2.8E-18 117.3 11.3 91 213-310 3-99 (168)
146 1wg5_A Heterogeneous nuclear r 99.5 6.9E-14 2.4E-18 110.2 9.8 78 210-289 12-95 (104)
147 3md3_A Nuclear and cytoplasmic 99.5 8.1E-14 2.8E-18 116.8 10.7 92 214-310 1-97 (166)
148 1l3k_A Heterogeneous nuclear r 99.5 7.8E-14 2.7E-18 120.6 10.9 98 209-310 9-114 (196)
149 2xs2_A Deleted in azoospermia- 99.5 1.6E-14 5.4E-19 113.1 5.7 79 210-291 6-89 (102)
150 4f02_A Polyadenylate-binding p 99.5 4.9E-14 1.7E-18 124.8 9.2 94 212-310 14-113 (213)
151 2db1_A Heterogeneous nuclear r 99.5 5.4E-14 1.8E-18 113.6 8.2 78 209-288 13-98 (118)
152 3pgw_A U1-A; protein-RNA compl 99.5 4.2E-13 1.4E-17 123.1 14.7 81 208-289 4-91 (282)
153 2diu_A KIAA0430 protein; struc 99.5 1.7E-13 5.7E-18 106.1 9.5 75 212-291 8-87 (96)
154 4f02_A Polyadenylate-binding p 99.5 1.1E-13 3.9E-18 122.4 9.8 77 213-290 103-183 (213)
155 3md3_A Nuclear and cytoplasmic 99.5 2.4E-13 8.2E-18 113.9 11.2 77 210-287 84-166 (166)
156 2dnn_A RNA-binding protein 12; 99.5 2E-13 6.8E-18 109.1 10.0 78 208-288 11-93 (109)
157 2hgl_A HNRPF protein, heteroge 99.5 5.1E-14 1.7E-18 116.9 6.8 79 208-288 39-125 (136)
158 2yh0_A Splicing factor U2AF 65 99.5 2E-13 6.9E-18 118.2 10.7 80 211-291 112-197 (198)
159 1wez_A HnRNP H', FTP-3, hetero 99.5 9.2E-14 3.2E-18 109.4 7.7 78 211-291 13-95 (102)
160 3q2s_C Cleavage and polyadenyl 99.5 6.2E-14 2.1E-18 126.3 7.4 75 212-287 67-149 (229)
161 2f3j_A RNA and export factor b 99.5 1.7E-13 5.7E-18 118.7 9.8 78 211-289 86-168 (177)
162 3sde_A Paraspeckle component 1 99.5 3.1E-13 1.1E-17 123.3 12.2 76 211-287 20-95 (261)
163 2g4b_A Splicing factor U2AF 65 99.5 3.7E-13 1.3E-17 113.9 11.7 91 212-310 3-104 (172)
164 2qfj_A FBP-interacting repress 99.4 3.3E-13 1.1E-17 118.4 10.6 77 212-289 124-206 (216)
165 1l3k_A Heterogeneous nuclear r 99.4 4.8E-13 1.6E-17 115.6 10.4 81 211-293 102-188 (196)
166 3pgw_S U1-70K; protein-RNA com 99.4 4.8E-13 1.6E-17 131.4 11.5 79 211-290 100-184 (437)
167 2lmi_A GRSF-1, G-rich sequence 99.4 9.8E-14 3.4E-18 109.9 5.3 78 210-289 8-93 (107)
168 3pgw_A U1-A; protein-RNA compl 99.4 6.9E-13 2.4E-17 121.7 11.8 76 210-286 204-281 (282)
169 1wel_A RNA-binding protein 12; 99.4 4.4E-14 1.5E-18 114.8 3.3 77 211-289 23-105 (124)
170 1qm9_A Polypyrimidine tract-bi 99.4 4.5E-13 1.5E-17 116.5 9.2 76 213-289 3-80 (198)
171 2adc_A Polypyrimidine tract-bi 99.4 4.8E-13 1.6E-17 119.7 9.5 78 211-289 32-111 (229)
172 2g4b_A Splicing factor U2AF 65 99.4 4.9E-13 1.7E-17 113.1 8.8 73 212-285 93-171 (172)
173 2cjk_A Nuclear polyadenylated 99.4 3.8E-13 1.3E-17 113.3 7.7 74 213-288 87-166 (167)
174 3nmr_A Cugbp ELAV-like family 99.4 7.9E-13 2.7E-17 111.9 9.5 93 212-310 2-105 (175)
175 2adc_A Polypyrimidine tract-bi 99.4 1.3E-12 4.4E-17 116.9 10.3 76 212-288 150-228 (229)
176 1fje_B Nucleolin RBD12, protei 99.4 1.5E-12 5E-17 110.7 10.1 77 211-289 97-175 (175)
177 2yh0_A Splicing factor U2AF 65 99.4 4.2E-12 1.4E-16 109.8 13.1 76 213-290 4-90 (198)
178 1qm9_A Polypyrimidine tract-bi 99.4 8E-13 2.7E-17 114.9 8.5 77 211-288 118-197 (198)
179 3nmr_A Cugbp ELAV-like family 99.4 1.3E-12 4.5E-17 110.5 9.6 74 212-286 94-175 (175)
180 2hgn_A Heterogeneous nuclear r 99.4 2.2E-13 7.7E-18 113.5 4.4 78 211-291 44-126 (139)
181 1fje_B Nucleolin RBD12, protei 99.4 2.7E-12 9.3E-17 109.1 11.3 96 209-310 9-109 (175)
182 2voo_A Lupus LA protein; RNA-b 99.4 1.8E-12 6E-17 113.7 10.3 75 212-288 108-187 (193)
183 1b7f_A Protein (SXL-lethal pro 99.4 2.2E-12 7.5E-17 108.5 10.3 74 211-285 87-168 (168)
184 2hgm_A HNRPF protein, heteroge 99.4 6.6E-13 2.2E-17 108.8 6.5 75 211-288 40-121 (126)
185 2qfj_A FBP-interacting repress 99.4 1.8E-12 6.2E-17 113.6 9.8 77 212-289 27-109 (216)
186 2dnl_A Cytoplasmic polyadenyla 99.4 2.2E-12 7.4E-17 103.3 9.3 74 211-288 6-88 (114)
187 2dha_A FLJ20171 protein; RRM d 99.4 6.3E-13 2.2E-17 108.4 5.6 75 212-288 22-105 (123)
188 2cjk_A Nuclear polyadenylated 99.3 2.9E-12 9.8E-17 107.8 8.7 75 212-289 2-82 (167)
189 2dit_A HIV TAT specific factor 99.3 1.1E-11 3.7E-16 98.9 11.6 79 211-290 13-104 (112)
190 1fxl_A Paraneoplastic encephal 99.3 3.6E-12 1.2E-16 106.8 9.2 73 212-285 87-167 (167)
191 3smz_A Protein raver-1, ribonu 99.3 3.3E-12 1.1E-16 117.3 9.7 81 210-291 181-267 (284)
192 2pe8_A Splicing factor 45; RRM 99.3 8.9E-12 3E-16 98.7 10.2 75 213-288 8-94 (105)
193 2ghp_A U4/U6 snRNA-associated 99.3 4.8E-12 1.7E-16 116.6 9.8 76 209-286 37-116 (292)
194 2ghp_A U4/U6 snRNA-associated 99.3 6.6E-12 2.3E-16 115.7 10.4 77 211-289 208-292 (292)
195 2j8a_A Histone-lysine N-methyl 99.3 4.5E-12 1.5E-16 103.6 7.7 73 214-287 3-95 (136)
196 3smz_A Protein raver-1, ribonu 99.3 1.1E-11 3.9E-16 113.7 11.2 74 212-287 21-94 (284)
197 2d9o_A DNAJ (HSP40) homolog, s 99.3 5.3E-11 1.8E-15 93.5 12.4 66 223-291 27-93 (100)
198 3tyt_A Heterogeneous nuclear r 99.3 9.8E-12 3.4E-16 109.8 8.2 72 213-285 123-204 (205)
199 3tht_A Alkylated DNA repair pr 99.2 3.4E-11 1.2E-15 114.4 9.9 75 211-286 16-97 (345)
200 3sde_A Paraspeckle component 1 99.2 4.4E-11 1.5E-15 109.0 9.5 79 213-291 96-182 (261)
201 1jmt_A Splicing factor U2AF 35 99.2 1.3E-11 4.4E-16 97.6 4.3 67 218-285 20-103 (104)
202 3v4m_A Splicing factor U2AF 65 99.1 1.6E-10 5.6E-15 91.4 8.8 75 213-288 5-97 (105)
203 3ue2_A Poly(U)-binding-splicin 99.0 7.9E-10 2.7E-14 89.3 9.2 74 213-287 20-108 (118)
204 3s6e_A RNA-binding protein 39; 99.0 6.6E-10 2.3E-14 89.3 7.6 61 227-288 31-93 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.0 3.4E-09 1.2E-13 81.1 9.4 71 214-288 8-86 (91)
206 1owx_A Lupus LA protein, SS-B, 98.9 4E-09 1.4E-13 85.4 8.8 75 211-285 16-93 (121)
207 1ufw_A Synaptojanin 2; RNP dom 98.7 4.5E-08 1.5E-12 75.3 7.8 69 214-286 16-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.4 4E-07 1.4E-11 80.6 6.9 63 224-287 140-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.4 2.6E-06 9E-11 67.0 9.9 70 213-283 21-95 (117)
210 2dhx_A Poly (ADP-ribose) polym 97.8 0.00033 1.1E-08 54.5 11.6 85 213-311 8-97 (104)
211 1wey_A Calcipressin 1; structu 97.8 0.00015 5.2E-09 56.5 9.3 75 214-289 6-85 (104)
212 1wwh_A Nucleoporin 35, nucleop 97.6 0.00038 1.3E-08 55.6 9.2 73 211-286 22-95 (119)
213 3p3d_A Nucleoporin 53; structu 96.7 0.0011 3.8E-08 53.7 4.1 71 214-287 8-98 (132)
214 2d9n_A Cleavage and polyadenyl 96.4 0.0015 5.1E-08 48.2 2.7 31 138-168 4-34 (77)
215 2rhk_C Cleavage and polyadenyl 95.9 0.0021 7.3E-08 46.8 0.9 26 142-167 14-39 (72)
216 2cqe_A KIAA1064 protein; CCCH 95.7 0.0051 1.7E-07 47.5 2.7 24 143-166 12-35 (98)
217 1whv_A Poly(A)-specific ribonu 95.7 0.046 1.6E-06 42.0 7.8 52 214-268 17-68 (100)
218 3d2q_A Muscleblind-like protei 95.7 0.0027 9.1E-08 45.9 0.9 25 143-167 5-30 (70)
219 1uw4_A UPF3X; nonsense mediate 95.5 0.087 3E-06 39.9 8.9 63 214-277 2-72 (91)
220 3ctr_A Poly(A)-specific ribonu 95.4 0.017 5.8E-07 44.5 4.6 52 215-269 8-59 (101)
221 3pq1_A Poly(A) RNA polymerase; 95.3 0.0096 3.3E-07 58.3 3.7 53 214-267 54-107 (464)
222 3d2n_A Muscleblind-like protei 95.0 0.012 4E-07 44.0 2.6 25 144-168 9-34 (83)
223 3d2q_A Muscleblind-like protei 94.5 0.0078 2.7E-07 43.4 0.5 25 142-167 40-64 (70)
224 2i2y_A Fusion protein consists 94.4 0.016 5.4E-07 47.4 2.0 39 249-288 13-51 (150)
225 2rhk_C Cleavage and polyadenyl 94.1 0.017 5.7E-07 42.0 1.5 26 143-169 43-69 (72)
226 2e5s_A Otthump00000018578; ZF- 94.0 0.0058 2E-07 47.2 -1.2 28 141-168 17-45 (98)
227 2rpp_A Muscleblind-like protei 94.0 0.018 6.2E-07 43.6 1.5 25 144-168 17-42 (89)
228 2d9n_A Cleavage and polyadenyl 94.0 0.025 8.5E-07 41.5 2.3 25 144-169 38-63 (77)
229 2e5s_A Otthump00000018578; ZF- 93.4 0.015 5.1E-07 44.9 0.2 26 142-168 54-79 (98)
230 1m9o_A Tristetraproline; Cys3H 93.0 0.07 2.4E-06 38.7 3.3 25 143-167 11-36 (77)
231 3d2n_A Muscleblind-like protei 92.4 0.038 1.3E-06 41.2 1.1 23 143-166 42-64 (83)
232 2l08_A Regulator of nonsense t 92.3 0.27 9.3E-06 37.6 5.9 63 214-277 10-80 (97)
233 2kn4_A Immunoglobulin G-bindin 90.8 0.2 6.8E-06 40.8 4.0 22 248-269 12-33 (158)
234 2cqe_A KIAA1064 protein; CCCH 90.1 0.13 4.5E-06 39.4 2.1 24 144-167 36-60 (98)
235 1m9o_A Tristetraproline; Cys3H 89.8 0.061 2.1E-06 39.0 0.0 25 144-168 50-75 (77)
236 2rpp_A Muscleblind-like protei 88.8 0.1 3.6E-06 39.3 0.7 23 143-166 50-72 (89)
237 1z2q_A LM5-1; membrane protein 88.7 0.037 1.3E-06 41.2 -1.9 45 11-60 11-55 (84)
238 2d9m_A Zinc finger CCCH-type d 88.2 0.15 5.2E-06 36.4 1.1 22 145-166 21-42 (69)
239 2yw8_A RUN and FYVE domain-con 87.8 0.063 2.2E-06 39.8 -1.1 38 21-60 16-53 (82)
240 2fc6_A Nuclear, target of EGR1 87.3 0.22 7.6E-06 33.0 1.4 26 143-168 19-45 (50)
241 1y02_A CARP2, FYVE-ring finger 86.5 0.088 3E-06 42.0 -1.1 46 23-70 18-67 (120)
242 1vfy_A Phosphatidylinositol-3- 85.8 0.064 2.2E-06 38.8 -2.0 32 25-58 12-43 (73)
243 3t7l_A Zinc finger FYVE domain 84.9 0.14 4.9E-06 38.5 -0.5 38 21-60 17-54 (90)
244 1joc_A EEA1, early endosomal a 82.8 0.17 5.7E-06 40.6 -1.0 38 21-60 66-103 (125)
245 1wfk_A Zinc finger, FYVE domai 81.0 0.12 4.2E-06 38.8 -2.2 35 23-59 8-42 (88)
246 1x4u_A Zinc finger, FYVE domai 80.7 0.16 5.3E-06 37.8 -1.8 37 21-59 11-47 (84)
247 3d45_A Poly(A)-specific ribonu 80.4 5.2 0.00018 39.4 8.6 53 214-269 441-493 (507)
248 1dvp_A HRS, hepatocyte growth 76.9 0.19 6.4E-06 44.1 -2.8 34 24-59 161-194 (220)
249 2csz_A Synaptotagmin-like prot 71.0 2.4 8.2E-05 30.8 2.4 56 4-70 2-60 (76)
250 3zyq_A Hepatocyte growth facto 70.3 0.61 2.1E-05 41.0 -1.1 33 24-58 164-196 (226)
251 3mpx_A FYVE, rhogef and PH dom 57.8 2.1 7.3E-05 40.7 0.0 34 22-57 373-406 (434)
252 2zet_C Melanophilin; complex, 54.5 2.4 8.3E-05 35.0 -0.2 34 23-57 67-100 (153)
253 3u9g_A Zinc finger CCCH-type a 46.4 6.8 0.00023 34.3 1.4 27 143-169 88-118 (229)
254 3vk6_A E3 ubiquitin-protein li 45.8 10 0.00034 29.0 2.0 36 26-67 3-44 (101)
255 3u9g_A Zinc finger CCCH-type a 41.0 11 0.00036 33.1 1.7 22 144-166 175-196 (229)
256 2m0e_A Zinc finger and BTB dom 38.1 10 0.00035 19.8 0.8 10 26-35 4-13 (29)
257 2kvf_A Zinc finger and BTB dom 37.6 8.9 0.00031 20.2 0.5 10 26-35 5-14 (28)
258 1znf_A 31ST zinc finger from X 37.4 11 0.00037 19.5 0.8 10 26-35 3-12 (27)
259 2dip_A Zinc finger SWIM domain 36.8 7.5 0.00026 29.5 0.1 36 22-70 29-65 (98)
260 2fc7_A ZZZ3 protein; structure 36.8 15 0.0005 26.9 1.7 36 22-69 19-57 (82)
261 1klr_A Zinc finger Y-chromosom 36.0 11 0.00039 19.8 0.8 10 26-35 4-13 (30)
262 1ard_A Yeast transcription fac 35.6 11 0.00039 19.7 0.8 10 26-35 4-13 (29)
263 2bn5_B U1 small nuclear ribonu 35.2 25 0.00086 19.2 2.0 10 317-326 7-16 (26)
264 1zbd_B Rabphilin-3A; G protein 35.1 5.5 0.00019 32.0 -1.0 40 22-72 53-92 (134)
265 2lvu_A Zinc finger and BTB dom 41.3 8.1 0.00028 20.0 0.0 10 26-35 4-13 (26)
266 2m0f_A Zinc finger and BTB dom 33.6 11 0.00038 19.7 0.5 10 26-35 4-13 (29)
267 2g0c_A ATP-dependent RNA helic 33.1 1E+02 0.0035 21.2 5.8 68 215-286 2-75 (76)
268 1p7a_A BF3, BKLF, kruppel-like 33.1 13 0.00046 21.0 0.8 11 25-35 12-22 (37)
269 2elr_A Zinc finger protein 406 33.0 13 0.00045 20.8 0.8 11 25-35 10-20 (36)
270 2kvh_A Zinc finger and BTB dom 32.8 12 0.00041 19.5 0.5 10 26-35 5-14 (27)
271 1rik_A E6APC1 peptide; E6-bind 32.5 12 0.00042 19.6 0.5 10 26-35 4-13 (29)
272 1paa_A Yeast transcription fac 31.0 15 0.00052 19.4 0.8 10 26-35 4-13 (30)
273 1srk_A Zinc finger protein ZFP 30.9 13 0.00045 20.7 0.5 10 26-35 9-18 (35)
274 2kvg_A Zinc finger and BTB dom 30.5 10 0.00034 20.0 -0.1 10 26-35 5-14 (27)
275 2elt_A Zinc finger protein 406 29.6 14 0.0005 20.7 0.5 11 25-35 10-20 (36)
276 2lvt_A Zinc finger and BTB dom 35.4 11 0.00039 19.9 0.0 10 26-35 4-13 (29)
277 1rim_A E6APC2 peptide; E6-bind 28.8 17 0.00059 20.2 0.8 10 26-35 4-13 (33)
278 2ea5_A Cell growth regulator w 28.7 25 0.00087 24.2 1.8 49 20-73 11-59 (68)
279 2lvr_A Zinc finger and BTB dom 34.5 12 0.00042 19.8 0.0 10 26-35 5-14 (30)
280 2elx_A Zinc finger protein 406 28.0 16 0.00054 20.2 0.5 11 25-35 8-18 (35)
281 2m0d_A Zinc finger and BTB dom 27.6 16 0.00055 19.1 0.4 10 26-35 5-14 (30)
282 2elq_A Zinc finger protein 406 27.5 17 0.00057 20.5 0.5 11 25-35 10-20 (36)
283 2kfq_A FP1; protein, de novo p 26.8 17 0.00059 20.0 0.5 10 26-35 4-13 (32)
284 2ecg_A Baculoviral IAP repeat- 26.6 36 0.0012 23.6 2.3 49 22-75 23-71 (75)
285 1lv3_A Hypothetical protein YA 25.3 33 0.0011 24.1 1.8 20 24-46 9-28 (68)
286 2elm_A Zinc finger protein 406 24.4 23 0.00078 20.2 0.7 10 26-35 11-20 (37)
287 2elv_A Zinc finger protein 406 24.3 20 0.00069 20.1 0.5 10 26-35 11-20 (36)
288 2elp_A Zinc finger protein 406 23.8 22 0.00075 20.1 0.6 11 25-35 10-20 (37)
289 2els_A Zinc finger protein 406 23.2 21 0.00073 20.0 0.4 11 25-35 10-20 (36)
290 1njq_A Superman protein; zinc- 23.0 22 0.00074 20.5 0.4 10 26-35 8-17 (39)
291 1wil_A KIAA1045 protein; ring 22.5 26 0.0009 25.8 0.9 11 25-35 30-40 (89)
292 2elo_A Zinc finger protein 406 22.5 17 0.0006 20.5 -0.1 11 25-35 10-20 (37)
293 2eos_A B-cell lymphoma 6 prote 21.9 29 0.00098 20.3 0.9 11 25-35 12-22 (42)
294 2yte_A Zinc finger protein 473 21.9 27 0.00094 20.3 0.8 11 25-35 11-21 (42)
295 2enf_A Zinc finger protein 347 21.8 28 0.00096 20.8 0.8 11 25-35 13-23 (46)
296 2en7_A Zinc finger protein 268 21.0 29 0.00098 20.4 0.7 11 25-35 13-23 (44)
297 2epc_A Zinc finger protein 32; 20.7 26 0.00091 20.3 0.5 11 25-35 12-22 (42)
298 2e5r_A Dystrobrevin alpha; ZZ 20.2 24 0.00082 24.3 0.2 33 23-68 10-43 (63)
No 1
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.95 E-value=1.6e-29 Score=229.41 Aligned_cols=149 Identities=28% Similarity=0.498 Sum_probs=114.9
Q ss_pred hcCCCccCCCccccccccccccCCCCCCCCCCCCCCCCCCCC-c-ccCccccCCCCCChhHHHHHHhhcCCCCCCCCCCC
Q psy14139 134 RTTPYYKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPL-A-DQNIKDRYYGVNDPVAEKLMARASTMPKLDPPEDK 211 (327)
Q Consensus 134 ~~~p~y~r~~~~~C~ff~kG~C~rG~~Cpy~H~~p~~~~~~l-~-~qni~dr~~G~~~p~~~k~~~~~~~~p~~~~p~d~ 211 (327)
+.....+++++++|+||+||+|.+|++|+|+|++|++.+... + .+++.|.| |+ .++...+..+.+..+ .+.
T Consensus 60 g~t~~~~~~~~~~C~ffakG~C~~G~~C~y~H~lPt~~d~~~~~~~~~~~D~f-Gr-----~k~~~~~d~~~g~gs-~~~ 132 (240)
T 3u1l_A 60 GKTRGDNDGQLFFCLFFAKGMCCLGPKCEYLHHIPDEEDIGKLALRTEVLDCF-GR-----EKFADYREDMGGIGS-FRK 132 (240)
T ss_dssp BBCHHHHTTCCSBCHHHHTTCCSCGGGCSSBBSCCCHHHHHHHHHHCSSBCTT-SS-----BCGGGTC----------CC
T ss_pred ccccCCcCCCCeEcCccccCCCCCCCCCCccCCCCCccchhhhcccccCcccc-cc-----hhcccchhcccCcCc-ccc
Confidence 333345678999999999999999999999999998765321 1 13455665 44 245555566665544 477
Q ss_pred CccEEEEcCCCCCC---------CHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEE-------
Q psy14139 212 TITTLYVGNLGDKL---------TEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVIL------- 275 (327)
Q Consensus 212 ~~~tLfVgnLp~~i---------te~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i------- 275 (327)
..++||||||+..+ +|++|+++|++||+|.+|+|+.++|||||+|.++++|+.|+++ ++|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~a-m~g~~l~~~~~~e 211 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEA-MSNQTLLLPSDKE 211 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHH-HTTCCCCCTTSTT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHH-hCCCEEecccccc
Confidence 88999999999988 7999999999999999999999999999999999999999998 588888
Q ss_pred -----CCeeEEEEeccCCCC
Q psy14139 276 -----GGRRLNIKWGRAQAN 290 (327)
Q Consensus 276 -----~G~~L~V~~ak~~~~ 290 (327)
.|+.|+|+||++.+.
T Consensus 212 ~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 212 WDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp GGGGGGSCCCEEEECC----
T ss_pred ccccCCCCEEEEEEccCCCC
Confidence 899999999997654
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=7.7e-18 Score=132.30 Aligned_cols=75 Identities=25% Similarity=0.483 Sum_probs=70.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+|||.+++|++|+++|++||+|.+++++.+ +|||||+|.+.++|++|++. ++|..++|+.|+|.||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~-lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT-LNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH-HTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH-hCCCEECCEEEEEEEe
Confidence 3579999999999999999999999999999999864 57999999999999999997 6999999999999999
Q ss_pred cC
Q psy14139 286 RA 287 (327)
Q Consensus 286 k~ 287 (327)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 86
No 3
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.2e-18 Score=133.43 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=74.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhc-CCeEECCeeEEEEeccCCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSF-NKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l-~g~~i~G~~L~V~~ak~~~ 289 (327)
...++|||+|||.+++|++|+++|++||+|.+++|+.++|||||+|.+.++|+.|++.+. ++..+.|++|+|.|++++.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 345899999999999999999999999999999999999999999999999999999742 3589999999999998876
Q ss_pred CCC
Q psy14139 290 NRG 292 (327)
Q Consensus 290 ~~~ 292 (327)
...
T Consensus 94 ~~~ 96 (105)
T 1sjq_A 94 LKT 96 (105)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 4
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=125.50 Aligned_cols=80 Identities=70% Similarity=1.198 Sum_probs=74.6
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 207 PPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 207 ~p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
++.+...++|||+|||.++++++|+++|++||.|.++.+..++++|||+|.+.++|++|++.+.++..++|+.|+|.|++
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 35567779999999999999999999999999999999999999999999999999999998449999999999999985
No 5
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=1.8e-17 Score=133.49 Aligned_cols=79 Identities=24% Similarity=0.497 Sum_probs=72.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
.++|||+|||.+++|++|+++|++||.|.+++|+.+ +|||||+|.+.++|++|++. ++|..++|+.|+|.|++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~-l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK-MNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH-HTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH-cCCCEECCEEEEEEECCCc
Confidence 468999999999999999999999999999999875 68999999999999999997 6999999999999999887
Q ss_pred CCCC
Q psy14139 289 ANRG 292 (327)
Q Consensus 289 ~~~~ 292 (327)
..+.
T Consensus 84 ~~~~ 87 (115)
T 4f25_A 84 KERE 87 (115)
T ss_dssp CC--
T ss_pred cccc
Confidence 6543
No 6
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.2e-17 Score=126.36 Aligned_cols=81 Identities=32% Similarity=0.539 Sum_probs=75.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEEC--CeeEEEEeccC
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILG--GRRLNIKWGRA 287 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~--G~~L~V~~ak~ 287 (327)
....++|||+|||.++++++|+++|++||.|.++.+..+++||||+|.+.++|++|++. +++..+. |+.|+|.|+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAK-MRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHH-HTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHH-HCCCEeCCCCcEEEEEECCC
Confidence 34558999999999999999999999999999999999999999999999999999997 6999999 99999999998
Q ss_pred CCCC
Q psy14139 288 QANR 291 (327)
Q Consensus 288 ~~~~ 291 (327)
++.+
T Consensus 93 ~~~~ 96 (97)
T 1why_A 93 GPSS 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 7
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=126.15 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=74.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHh-cCCeEECCeeEEEEeccCCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS-FNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~-l~g~~i~G~~L~V~~ak~~~ 289 (327)
...++|||+|||.+++|++|+++|++||.|.++.++.++|||||+|.+.++|+.|++.+ .++..+.|++|+|.|++++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 45589999999999999999999999999999999999999999999999999999974 26789999999999999876
Q ss_pred CCC
Q psy14139 290 NRG 292 (327)
Q Consensus 290 ~~~ 292 (327)
...
T Consensus 93 ~~~ 95 (101)
T 2cq1_A 93 LKT 95 (101)
T ss_dssp CCC
T ss_pred CcC
Confidence 543
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=127.65 Aligned_cols=79 Identities=16% Similarity=0.353 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFG-EIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG-~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
.+|||+|||.+++|++|+++|++|| +|.+|+|+.+ +|||||+|.+.++|++|++.+.++..++|++|+|.|++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 8999998763 69999999999999999997557788999999999999
Q ss_pred CCCCCC
Q psy14139 287 AQANRG 292 (327)
Q Consensus 287 ~~~~~~ 292 (327)
+++...
T Consensus 82 ~~~~~~ 87 (91)
T 2lxi_A 82 PKPKIN 87 (91)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 877653
No 9
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3e-16 Score=123.27 Aligned_cols=83 Identities=25% Similarity=0.485 Sum_probs=76.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
.+...++|||+|||.++++++|+++|++||.|.+|.|..+ ++||||+|.+.++|++|++. +++..+.|+.|+|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAA-MNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHH-HTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHH-hCCCCcCCCeEEEEE
Confidence 4456689999999999999999999999999999999873 68999999999999999997 699999999999999
Q ss_pred ccCCCCCC
Q psy14139 285 GRAQANRG 292 (327)
Q Consensus 285 ak~~~~~~ 292 (327)
++++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 99876554
No 10
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=126.66 Aligned_cols=81 Identities=22% Similarity=0.517 Sum_probs=75.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQAN 290 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~ 290 (327)
...++|||+|||.++++++|+++|++||.|.+|.+..+++||||+|.+.++|++|++. ++|..+.|+.|+|.|++++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS-VNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH-HTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH-cCCCEECCcEEEEEecCCCCC
Confidence 3458999999999999999999999999999999999999999999999999999997 699999999999999998765
Q ss_pred CC
Q psy14139 291 RG 292 (327)
Q Consensus 291 ~~ 292 (327)
..
T Consensus 102 ~~ 103 (109)
T 1x4g_A 102 MT 103 (109)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 11
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=122.15 Aligned_cols=80 Identities=25% Similarity=0.521 Sum_probs=74.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCC
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~ 289 (327)
+...++|||+|||.++++++|+++|++||.|.++.+. ++||||+|.+.++|++|++. +++..++|+.|+|.|++++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRN-LHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHH-HTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHH-hcCCccCCcEEEEEECCCCC
Confidence 4456899999999999999999999999999999998 89999999999999999997 69999999999999999877
Q ss_pred CCC
Q psy14139 290 NRG 292 (327)
Q Consensus 290 ~~~ 292 (327)
...
T Consensus 82 ~~~ 84 (90)
T 2dnq_A 82 KAS 84 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 12
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.2e-16 Score=123.11 Aligned_cols=83 Identities=25% Similarity=0.440 Sum_probs=76.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
.+...++|||+|||.++++++|+++|++||.|.+|.|..+ +++|||+|.+.++|++|++. +++..++|+.|+|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK-LHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHH-HTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHH-hCCCEECCEEEEEEE
Confidence 3456689999999999999999999999999999999876 78999999999999999997 699999999999999
Q ss_pred ccCCCCCC
Q psy14139 285 GRAQANRG 292 (327)
Q Consensus 285 ak~~~~~~ 292 (327)
++++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 99887554
No 13
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-16 Score=122.97 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=74.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
....++|||+|||.++++++|+++|++||.|.++.+..+ ++||||+|.+.++|++|++. +++..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE-VDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH-TTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH-hCCCEECCcEEEEE
Confidence 345689999999999999999999999999999999864 59999999999999999987 79999999999999
Q ss_pred eccCCCCCC
Q psy14139 284 WGRAQANRG 292 (327)
Q Consensus 284 ~ak~~~~~~ 292 (327)
|++++..+.
T Consensus 84 ~a~~~~~~~ 92 (99)
T 1whw_A 84 PSTIKKEAS 92 (99)
T ss_dssp ECCCCSTTC
T ss_pred EcCCCcccc
Confidence 999887653
No 14
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.5e-17 Score=126.62 Aligned_cols=77 Identities=30% Similarity=0.561 Sum_probs=72.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
...++|||+|||.++++++|+++|++||.|.++++...++||||+|.+.++|++|+.. ++|..++|+.|+|.|++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~-l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVA-LANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHH-HTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHH-hCCCeECCeEEEEEeccCC
Confidence 3458999999999999999999999999999999999999999999999999999997 7999999999999999874
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=123.29 Aligned_cols=82 Identities=12% Similarity=0.297 Sum_probs=75.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
.....++|||+|||.++++++|+++|++||.|.++++..+ +++|||+|.+.++|++|++. +++..++|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK-MDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH-HTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHH-hCCCEECCEEEEEE
Confidence 3455689999999999999999999999999999999875 48999999999999999997 69999999999999
Q ss_pred eccCCCCC
Q psy14139 284 WGRAQANR 291 (327)
Q Consensus 284 ~ak~~~~~ 291 (327)
|++++..+
T Consensus 92 ~a~~~~~~ 99 (100)
T 2do4_A 92 ISNSGPSS 99 (100)
T ss_dssp ECCCCSCC
T ss_pred ECCCCCCC
Confidence 99988754
No 16
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.7e-16 Score=122.33 Aligned_cols=79 Identities=19% Similarity=0.357 Sum_probs=73.5
Q ss_pred CccEEEEcCCCCCCCHHHHH----HHHhhcCCeEEEEEecC---CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 212 TITTLYVGNLGDKLTEQDLR----DHFYQFGEIRSVTILSK---QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr----~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
..++|||+|||.++++++|+ ++|++||.|.+++|+.+ ++||||+|.+.++|++|++. ++|..++|+.|+|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~-l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNS-LHRYKIGSKKILVSL 86 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHH-HTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 45799999999999999999 99999999999999876 89999999999999999998 699999999999999
Q ss_pred ccCCCCC
Q psy14139 285 GRAQANR 291 (327)
Q Consensus 285 ak~~~~~ 291 (327)
+++....
T Consensus 87 a~~~~~~ 93 (96)
T 2dgx_A 87 ATGASGP 93 (96)
T ss_dssp CCCSSCC
T ss_pred cCCCCCC
Confidence 9887644
No 17
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=125.13 Aligned_cols=84 Identities=24% Similarity=0.533 Sum_probs=76.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-------CCeEEEEeCCHHHHHHHHHHhc-CCeEECCee
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-------QQCAFIQYTSRPAAEAAVEHSF-NKVILGGRR 279 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-------kg~aFV~F~~~~~Ae~A~~~~l-~g~~i~G~~ 279 (327)
+.+...++|||+|||..+++++|+++|++||.|.+|.|..+ ++||||+|.+.++|++|++. + ++..+.|+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~~~~~~~g~~ 88 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA-LCHSTHLYGRR 88 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHH-HHTCCBSSSCB
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHH-hccCCeECCCE
Confidence 45566789999999999999999999999999999999876 79999999999999999997 7 899999999
Q ss_pred EEEEeccCCCCCC
Q psy14139 280 LNIKWGRAQANRG 292 (327)
Q Consensus 280 L~V~~ak~~~~~~ 292 (327)
|+|.|++++....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876553
No 18
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=4e-16 Score=122.71 Aligned_cols=81 Identities=30% Similarity=0.506 Sum_probs=74.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCC
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~ 289 (327)
....++|||+|||.++++++|+++|++||.|.++.+. ++||||+|.+.++|++|++. +++..++|+.|+|.|++++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEE-MNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHH-HTTEEETTEEEEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHH-HCCCccCCCEEEEEEcCCCc
Confidence 3456899999999999999999999999999999988 67999999999999999997 69999999999999999877
Q ss_pred CCCC
Q psy14139 290 NRGE 293 (327)
Q Consensus 290 ~~~~ 293 (327)
.+..
T Consensus 85 ~~~~ 88 (103)
T 2dgu_A 85 QKRK 88 (103)
T ss_dssp CCCC
T ss_pred ccch
Confidence 6543
No 19
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=8.3e-17 Score=126.00 Aligned_cols=77 Identities=27% Similarity=0.505 Sum_probs=72.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCCC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~~ 291 (327)
++|||+|||.++++++|+++|++||+|.++.+..+ +++|||+|.+.++|++|++. +++..++|+.|+|.|++++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRG-LDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHH-HHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHH-HCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999986 99999999999999999997 6999999999999999987654
No 20
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=125.98 Aligned_cols=82 Identities=17% Similarity=0.283 Sum_probs=73.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhc-CCeEECCeeEEEEeccCC
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSF-NKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l-~g~~i~G~~L~V~~ak~~ 288 (327)
....++|||+|||.+++|++|+++|++||.|.+|.|+.+++||||+|.+.++|++|++.+. ++..+.|++|+|.|++++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 3456899999999999999999999999999999999999999999999999999999741 346799999999999987
Q ss_pred CCC
Q psy14139 289 ANR 291 (327)
Q Consensus 289 ~~~ 291 (327)
...
T Consensus 92 ~~~ 94 (104)
T 1wex_A 92 RIT 94 (104)
T ss_dssp SCC
T ss_pred ccc
Confidence 644
No 21
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=125.50 Aligned_cols=78 Identities=21% Similarity=0.341 Sum_probs=71.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCC--eEECCeeEEEEeccCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNK--VILGGRRLNIKWGRAQ 288 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g--~~i~G~~L~V~~ak~~ 288 (327)
+..++|||+|||.+++|++|+++|++||.|.++++++.+|+|||+|.+.++|+.|++. +++ ..+.|++|+|.|++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~-ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNY-AADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHH-HHHSCEEETTEEEEEEECSCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH-hcCCCceeCCcEEEEEecccc
Confidence 3457999999999999999999999999999999999999999999999999999997 455 4589999999999876
Q ss_pred C
Q psy14139 289 A 289 (327)
Q Consensus 289 ~ 289 (327)
.
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 22
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.7e-16 Score=120.30 Aligned_cols=80 Identities=24% Similarity=0.455 Sum_probs=73.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
.....++|||+|||.++++++|+++|++||.|.++.+. +++|||+|.+.++|++|++. +++..+.|+.|+|.|++++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRG-LDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHH-HTTEEETTEEEEEEESSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHH-hCCCeeCCcEEEEEEccCC
Confidence 44567899999999999999999999999999999998 56999999999999999997 6999999999999999987
Q ss_pred CCC
Q psy14139 289 ANR 291 (327)
Q Consensus 289 ~~~ 291 (327)
...
T Consensus 83 ~~~ 85 (92)
T 2dgt_A 83 LRT 85 (92)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 23
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.69 E-value=5e-16 Score=124.39 Aligned_cols=84 Identities=21% Similarity=0.521 Sum_probs=76.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
+....++|||+|||.++++++|+++|++||.|.+|.|..+ ++||||+|.+.++|++|++. +++..++|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~V 89 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ-MGGQWLGGRQIRT 89 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-TTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH-hCCCEECCEEEEE
Confidence 4456789999999999999999999999999999999875 58999999999999999997 7999999999999
Q ss_pred EeccCCCCCCC
Q psy14139 283 KWGRAQANRGE 293 (327)
Q Consensus 283 ~~ak~~~~~~~ 293 (327)
.|++++.....
T Consensus 90 ~~a~~~~~~~~ 100 (115)
T 2dgo_A 90 NWATRKPPAPK 100 (115)
T ss_dssp EESSCCCCCSC
T ss_pred EEccCCCCCCc
Confidence 99998876543
No 24
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=1.6e-16 Score=119.50 Aligned_cols=75 Identities=27% Similarity=0.497 Sum_probs=70.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
.+|||+|||.++++++|+++|++||.|.++.+..+ +++|||+|.+.++|++|++. ++|..++|+.|+|.|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~-l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS-MQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH-HTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH-hcCCeeCCcEEEEEecCc
Confidence 58999999999999999999999999999999865 78999999999999999997 699999999999999998
Q ss_pred CC
Q psy14139 288 QA 289 (327)
Q Consensus 288 ~~ 289 (327)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 25
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.6e-16 Score=123.62 Aligned_cols=83 Identities=14% Similarity=0.262 Sum_probs=76.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECC-----eeEEE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGG-----RRLNI 282 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G-----~~L~V 282 (327)
+.....++|||+|||.++++++|+++|++||+|.++.|+.+ +||||+|.+.++|++|++. +++..+.| +.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~-l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRK-LDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHH-SSSEEEECTTSCEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHH-HCcCCccCCcCcceEEEE
Confidence 34456789999999999999999999999999999999988 9999999999999999997 79999999 99999
Q ss_pred EeccCCCCCC
Q psy14139 283 KWGRAQANRG 292 (327)
Q Consensus 283 ~~ak~~~~~~ 292 (327)
.|++++....
T Consensus 88 ~~a~~~~~~~ 97 (108)
T 1x4c_A 88 KVDGPRSPSY 97 (108)
T ss_dssp EESSCCSCCC
T ss_pred EeCCCCCCCC
Confidence 9999876543
No 26
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-16 Score=123.30 Aligned_cols=80 Identities=28% Similarity=0.488 Sum_probs=75.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQAN 290 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~ 290 (327)
...++|||+|||.++++++|+++|++||.|.++.+..+++||||+|.+.++|++|++. +++..++|+.|+|.|++++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~-l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVE-LDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHH-HTTCCBTTBCCEEEESSCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHH-hCCCEeCCceEEEEEcCCCCC
Confidence 4558999999999999999999999999999999999999999999999999999997 699999999999999998765
Q ss_pred C
Q psy14139 291 R 291 (327)
Q Consensus 291 ~ 291 (327)
.
T Consensus 92 ~ 92 (99)
T 2cpj_A 92 L 92 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=2.2e-16 Score=120.94 Aligned_cols=74 Identities=23% Similarity=0.247 Sum_probs=70.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
....|||+||+..++|++|+++|.+||+|.++++..++|||||+|.++++|++|+++ +|+..+.|+.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~-Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMA-LNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH-HTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHH-hcCCEECCcEEEEEECC
Confidence 347999999999999999999999999999999999999999999999999999998 69999999999999983
No 28
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=129.57 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=73.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcC--CeEECCeeEEEEeccCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFN--KVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~--g~~i~G~~L~V~~ak~~ 288 (327)
...++|||+|||.+++|++|+++|++||.|.+|+|+.++|||||+|.+.++|++|++. ++ +..+.|++|+|.|++++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~-l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNY-YTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHH-HHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHH-hccCCceECCeEEEEEEccCC
Confidence 3457999999999999999999999999999999999999999999999999999997 45 57899999999999987
Q ss_pred CCCC
Q psy14139 289 ANRG 292 (327)
Q Consensus 289 ~~~~ 292 (327)
..+.
T Consensus 108 ~~~~ 111 (119)
T 2ad9_A 108 ELKT 111 (119)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6553
No 29
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=126.04 Aligned_cols=78 Identities=22% Similarity=0.254 Sum_probs=71.6
Q ss_pred CccEEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcC--CeEECCeeEEEEeccCC
Q psy14139 212 TITTLYVGNLGD-KLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFN--KVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 212 ~~~tLfVgnLp~-~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~--g~~i~G~~L~V~~ak~~ 288 (327)
..++|||+|||. +++|++|+++|++||.|.++.|+.++++|||+|.+.++|+.|++.+ + +..+.|++|+|.|++..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l-~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYY-TTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHH-HHSCCEETTEECEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHH-cCCCceECCcEEEEEECCCC
Confidence 457999999999 9999999999999999999999999999999999999999999974 5 46799999999999865
Q ss_pred CC
Q psy14139 289 AN 290 (327)
Q Consensus 289 ~~ 290 (327)
..
T Consensus 93 ~~ 94 (102)
T 1x4d_A 93 KR 94 (102)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 30
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.68 E-value=3.2e-16 Score=123.38 Aligned_cols=81 Identities=27% Similarity=0.471 Sum_probs=74.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECC---eeEEE
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGG---RRLNI 282 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G---~~L~V 282 (327)
...++|||+|||.++++++|+++|++||.|.++.|..+ ++||||+|.+.++|++|++. +++..+.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~-l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA-LHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH-HSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH-HcCCccCCCCCccEEE
Confidence 45689999999999999999999999999999999876 79999999999999999997 69998888 99999
Q ss_pred EeccCCCCCC
Q psy14139 283 KWGRAQANRG 292 (327)
Q Consensus 283 ~~ak~~~~~~ 292 (327)
.|++++..+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999887654
No 31
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=119.95 Aligned_cols=77 Identities=22% Similarity=0.525 Sum_probs=69.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
+.++|||+|||.++++++|+++|++||.|.++.+..+ +++|||+|.+.++|++|++. ++|..++|+.|+|.|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ-MGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-HTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH-cCCCEECCeEEEEEec
Confidence 3579999999999999999999999999999999875 58999999999999999997 6999999999999999
Q ss_pred cCCC
Q psy14139 286 RAQA 289 (327)
Q Consensus 286 k~~~ 289 (327)
++++
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 8763
No 32
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=124.84 Aligned_cols=80 Identities=24% Similarity=0.451 Sum_probs=73.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
....++|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|++. ++|..++|+.|+|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG-LNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH-HTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH-hcCCEECCcEEEEE
Confidence 455689999999999999999999999999999999864 68999999999999999997 69999999999999
Q ss_pred eccCCCC
Q psy14139 284 WGRAQAN 290 (327)
Q Consensus 284 ~ak~~~~ 290 (327)
|+++++.
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9988754
No 33
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.4e-16 Score=118.90 Aligned_cols=80 Identities=23% Similarity=0.437 Sum_probs=73.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCC
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~ 289 (327)
+...++|||+|||.++++++|+++|++||.|.++.+. +++|||+|.+.++|++|++. +++..++|+.|+|.|+++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQ-LNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHH-HTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHH-hCCCEECCcEEEEEECCCCC
Confidence 3456899999999999999999999999999999998 56999999999999999997 69999999999999999876
Q ss_pred CCC
Q psy14139 290 NRG 292 (327)
Q Consensus 290 ~~~ 292 (327)
.+.
T Consensus 83 ~~~ 85 (90)
T 2dnp_A 83 KKS 85 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 34
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=121.59 Aligned_cols=81 Identities=28% Similarity=0.504 Sum_probs=74.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEE-EEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSV-TILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v-~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
..++|||+|||.++++++|+++|++||.|.++ +|..+ ++||||+|.+.++|++|++. +++..++|+.|+|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA-MNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT-TTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34799999999999999999999999999999 88874 78999999999999999997 799999999999999
Q ss_pred ccCCCCCCC
Q psy14139 285 GRAQANRGE 293 (327)
Q Consensus 285 ak~~~~~~~ 293 (327)
++++..++.
T Consensus 83 a~~~~~~~~ 91 (96)
T 1x5t_A 83 AFKKDSKGS 91 (96)
T ss_dssp SCCCCCCCC
T ss_pred ecccCCCCC
Confidence 998876543
No 35
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=3.6e-16 Score=124.22 Aligned_cols=83 Identities=19% Similarity=0.426 Sum_probs=75.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
+.....++|||+|||.++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|+.. ++|..++|+.|+
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~-l~g~~~~g~~l~ 99 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA-LNGAEIMGQTIQ 99 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH-HTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH-cCCCEECCcEEE
Confidence 34456789999999999999999999999999999999764 69999999999999999997 699999999999
Q ss_pred EEeccCCCCC
Q psy14139 282 IKWGRAQANR 291 (327)
Q Consensus 282 V~~ak~~~~~ 291 (327)
|.|++++..+
T Consensus 100 V~~a~~~~~~ 109 (110)
T 1oo0_B 100 VDWCFVKGPK 109 (110)
T ss_dssp EEESEESSCC
T ss_pred EEEcccCCCC
Confidence 9999987654
No 36
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=2.9e-16 Score=125.14 Aligned_cols=80 Identities=24% Similarity=0.435 Sum_probs=72.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
.+...++|||+|||.++++++|+++|++||.|.++.+. +|||||+|.+.++|++|++. ++|..++|+.|+|.|++++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~-l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEE-VHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHH-HTTCEETTEECEEESCSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHH-cCCCEECCeEEEEEEecCC
Confidence 34566899999999999999999999999999999998 99999999999999999997 6999999999999999987
Q ss_pred CCC
Q psy14139 289 ANR 291 (327)
Q Consensus 289 ~~~ 291 (327)
..+
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 654
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.2e-16 Score=121.75 Aligned_cols=83 Identities=24% Similarity=0.392 Sum_probs=75.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
.....++|||+|||.++++++|+++|++||.|.++.+..+ ++||||+|.+.++|++|++. +++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI-MDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH-SSSCBCSSCBCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH-hCCCeECCeEEEE
Confidence 4456689999999999999999999999999999999874 58999999999999999997 7999999999999
Q ss_pred EeccCCCCCC
Q psy14139 283 KWGRAQANRG 292 (327)
Q Consensus 283 ~~ak~~~~~~ 292 (327)
.|++++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 1x5u_A 90 NKASAHNKNL 99 (105)
T ss_dssp EETTTTSCCC
T ss_pred EECCCCCcCC
Confidence 9999877653
No 38
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=122.11 Aligned_cols=81 Identities=26% Similarity=0.421 Sum_probs=71.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCC-eEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCC-eEECCeeEEEEeccC
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGE-IRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNK-VILGGRRLNIKWGRA 287 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~-I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g-~~i~G~~L~V~~ak~ 287 (327)
....++|||+|||.++++++|+++|++||. |..+.+ ..++||||+|.+.++|++|++. +++ ..++|+.|+|.|+++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~-l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIET-LSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHH-HTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHH-ccCCeeECCEEEEEEEccC
Confidence 345689999999999999999999999999 555544 5789999999999999999997 699 999999999999998
Q ss_pred CCCCC
Q psy14139 288 QANRG 292 (327)
Q Consensus 288 ~~~~~ 292 (327)
+..++
T Consensus 83 ~~~~~ 87 (93)
T 2cqh_A 83 KKLRS 87 (93)
T ss_dssp CCCCC
T ss_pred ccccC
Confidence 76654
No 39
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=6.1e-16 Score=120.58 Aligned_cols=82 Identities=18% Similarity=0.438 Sum_probs=74.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
.+...++|||+|||.++++++|+++|++||.|.++.|+.+ ++||||+|.+.++|++|++ +++..++|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN--MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH--HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH--hCCCEECCeEEEE
Confidence 4456689999999999999999999999999999999863 6899999999999999997 4999999999999
Q ss_pred EeccCCCCCC
Q psy14139 283 KWGRAQANRG 292 (327)
Q Consensus 283 ~~ak~~~~~~ 292 (327)
.|++++..+.
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9999877654
No 40
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=2.7e-16 Score=120.75 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=74.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
+...++|||+|||.++++++|+++|++||.|.++.+..+ +++|||+|.+.++|++|++. +++..++|+.|+|.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~-l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRM-MNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHH-HTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHH-hCCCEECCcEEEEEEc
Confidence 445689999999999999999999999999999999863 68999999999999999997 6999999999999999
Q ss_pred cCCCCC
Q psy14139 286 RAQANR 291 (327)
Q Consensus 286 k~~~~~ 291 (327)
++....
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 987643
No 41
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=7.2e-16 Score=124.32 Aligned_cols=81 Identities=21% Similarity=0.392 Sum_probs=74.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
...++|||+|||.++++++|+++|++||.|.+|.|..+ ++||||+|.+.++|++|++. ++|..++|+.|+|.|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~-l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD-MNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH-CSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH-hCCCEECCEEEEEEEC
Confidence 34589999999999999999999999999999999885 49999999999999999997 7999999999999999
Q ss_pred cCCCCCC
Q psy14139 286 RAQANRG 292 (327)
Q Consensus 286 k~~~~~~ 292 (327)
+++....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 9876543
No 42
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-15 Score=121.46 Aligned_cols=84 Identities=29% Similarity=0.549 Sum_probs=75.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK---QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
+.+...++|||+|||.++++++|+++|++||.|.++.|..+ ++||||+|.+.++|++|++. +++..++|+.|+|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYG-RDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHH-HTTCEETTEECEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHH-cCCCEECCeEEEEEE
Confidence 34556689999999999999999999999999999999764 67999999999999999987 699999999999999
Q ss_pred ccCCCCCC
Q psy14139 285 GRAQANRG 292 (327)
Q Consensus 285 ak~~~~~~ 292 (327)
++++....
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4a_A 96 PRSGRGTG 103 (109)
T ss_dssp CCCCCCCC
T ss_pred cccCCCCC
Confidence 99876543
No 43
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.2e-16 Score=119.83 Aligned_cols=80 Identities=29% Similarity=0.504 Sum_probs=73.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+|||.++++++|+++|++||.|.++.+..+ +++|||+|.+.++|++|++. +++..++|+.|+|.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ-LNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHH-HTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH-hCCCeeCCcEEEEEEc
Confidence 3479999999999999999999999999999999875 58999999999999999997 6999999999999999
Q ss_pred cCCCCCC
Q psy14139 286 RAQANRG 292 (327)
Q Consensus 286 k~~~~~~ 292 (327)
+++...+
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 9887654
No 44
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.6e-16 Score=121.87 Aligned_cols=81 Identities=26% Similarity=0.483 Sum_probs=74.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
...++|||+|||.++++++|+++|++||.|.++.|..+ ++||||+|.+.++|++|++. +++..++|+.|+|.|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN-MNESELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH-HTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH-hCCCEECCcEEEEEe
Confidence 45689999999999999999999999999999999764 78999999999999999997 699999999999999
Q ss_pred ccCCCCCC
Q psy14139 285 GRAQANRG 292 (327)
Q Consensus 285 ak~~~~~~ 292 (327)
++++..+.
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 99887654
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4e-16 Score=122.51 Aligned_cols=82 Identities=27% Similarity=0.477 Sum_probs=75.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
+...++|||+|||.++++++|+++|++||.|.++.+..+ ++||||+|.+.++|++|++. +++..+.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTE-MNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH-HTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHH-hCCCEeCCcEEEEEEe
Confidence 346689999999999999999999999999999999854 79999999999999999997 6999999999999999
Q ss_pred cCCCCCC
Q psy14139 286 RAQANRG 292 (327)
Q Consensus 286 k~~~~~~ 292 (327)
+++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9877654
No 46
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=123.10 Aligned_cols=84 Identities=26% Similarity=0.400 Sum_probs=75.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
+.....++|||+|||.++++++|+++|++||.|.++.|..+ +++|||+|.+.++|++|++. +++..++|+.|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~ 86 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA-MDGAELDGRELR 86 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHH-HSSCCBTTBCCE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHH-cCCCEECCcEEE
Confidence 34456789999999999999999999999999999999763 68999999999999999997 699999999999
Q ss_pred EEeccCCCCCC
Q psy14139 282 IKWGRAQANRG 292 (327)
Q Consensus 282 V~~ak~~~~~~ 292 (327)
|.|+++.....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2dnm_A 87 VQVARYGRRDL 97 (103)
T ss_dssp EEECSSCCSCC
T ss_pred EEECCcCCCCC
Confidence 99999876543
No 47
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.66 E-value=4.5e-16 Score=117.60 Aligned_cols=75 Identities=28% Similarity=0.531 Sum_probs=69.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
.+.++|||+|||.++++++|+++|++||.|.++.+..+ +++|||+|.+.++|++|++. ++|..++|+.|+|.|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN-MNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH-HTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH-hCCCEECCcEEEEEE
Confidence 45689999999999999999999999999999998653 79999999999999999987 699999999999999
Q ss_pred cc
Q psy14139 285 GR 286 (327)
Q Consensus 285 ak 286 (327)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 48
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=6.1e-16 Score=124.00 Aligned_cols=82 Identities=23% Similarity=0.455 Sum_probs=74.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
+...++|||+|||.++++++|+++|++||.|.+++|..+ ++||||+|.+.++|++|++. +++..+.|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS-MNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH-HTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH-cCCCEECCEEEEEE
Confidence 445689999999999999999999999999999999875 37999999999999999997 69999999999999
Q ss_pred eccCCCCCC
Q psy14139 284 WGRAQANRG 292 (327)
Q Consensus 284 ~ak~~~~~~ 292 (327)
|++++..+.
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 999876543
No 49
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.4e-16 Score=121.35 Aligned_cols=82 Identities=27% Similarity=0.457 Sum_probs=75.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
....++|||+|||.++++++|+++|++||.|.+|.|..+ ++||||+|.+.++|++|++. +++..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG-VSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH-TTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH-cCCCeeCCcEEEEE
Confidence 345689999999999999999999999999999999865 57999999999999999997 79999999999999
Q ss_pred eccCCCCCC
Q psy14139 284 WGRAQANRG 292 (327)
Q Consensus 284 ~ak~~~~~~ 292 (327)
|++++..+.
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 999887654
No 50
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.2e-16 Score=120.65 Aligned_cols=80 Identities=23% Similarity=0.407 Sum_probs=72.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec---------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS---------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~---------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
..++|||+|||.++++++|+++|++||.|.++.+.. .++||||+|.+.++|++|++. +++..++|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ-LQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH-STTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH-hCCCeeCCeEEEE
Confidence 347999999999999999999999999999999984 257999999999999999997 7999999999999
Q ss_pred EeccCCCCCC
Q psy14139 283 KWGRAQANRG 292 (327)
Q Consensus 283 ~~ak~~~~~~ 292 (327)
.|++++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998876543
No 51
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=9.2e-16 Score=121.84 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=75.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcC------CeEEC
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFN------KVILG 276 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~------g~~i~ 276 (327)
.....++|||+|||.++++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|++|++. ++ +..++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA-ASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH-HCTTTTTCCEESS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH-hccccccCCcEEc
Confidence 3455689999999999999999999999999999999853 78999999999999999997 68 99999
Q ss_pred CeeEEEEeccCCCCCC
Q psy14139 277 GRRLNIKWGRAQANRG 292 (327)
Q Consensus 277 G~~L~V~~ak~~~~~~ 292 (327)
|+.|+|.|++++....
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999999876654
No 52
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=5e-16 Score=118.01 Aligned_cols=77 Identities=18% Similarity=0.351 Sum_probs=71.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec-------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS-------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~-------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
.++|||+|||.++++++|+++|++||.|.++.+.. .+++|||+|.+.++|++|++. ++|..++|+.|+|.|+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH-MDGGQIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH-HTTCEETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH-cCCCeECCeEEEEEEC
Confidence 47999999999999999999999999999999864 478999999999999999997 6999999999999999
Q ss_pred cCCCC
Q psy14139 286 RAQAN 290 (327)
Q Consensus 286 k~~~~ 290 (327)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 53
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=9.8e-16 Score=118.05 Aligned_cols=77 Identities=29% Similarity=0.409 Sum_probs=70.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
.....++|||+|||.++++++|+++|++||.|.++.+..+ +++|||+|.+.++|++|++. +++..+.|+.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA-INNKQLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH-TTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH-cCCCeeCCcEEEE
Confidence 3455689999999999999999999999999999999764 68999999999999999997 7999999999999
Q ss_pred Eecc
Q psy14139 283 KWGR 286 (327)
Q Consensus 283 ~~ak 286 (327)
.|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 54
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=6.1e-16 Score=120.03 Aligned_cols=78 Identities=21% Similarity=0.357 Sum_probs=72.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
.++|||+|||.++++++|+++|++||.|.++++..+ +|+|||+|.+.++|++|++. ++|..++|+.|+|.|++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~-l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN-LNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH-HTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH-hCCCeECCeEEEEEEcC
Confidence 479999999999999999999999999999999864 79999999999999999997 69999999999999999
Q ss_pred CCCCC
Q psy14139 287 AQANR 291 (327)
Q Consensus 287 ~~~~~ 291 (327)
+++..
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87643
No 55
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.8e-16 Score=124.42 Aligned_cols=80 Identities=25% Similarity=0.457 Sum_probs=73.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
.+...++|||+|||.++++++|+++|++||.|.++++..+ +|||||+|.+.++|++|++. ++|..++|+.|+|.|
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~-l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK-LHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH-HTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 4456789999999999999999999999999999999875 79999999999999999997 699999999999999
Q ss_pred ccCCC
Q psy14139 285 GRAQA 289 (327)
Q Consensus 285 ak~~~ 289 (327)
++++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98763
No 56
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=127.92 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=72.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHH----HHHhhcCCeEEEEEec---CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLR----DHFYQFGEIRSVTILS---KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr----~~F~~fG~I~~v~i~~---~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
.....++|||+|||..+++++|+ ++|++||.|.+|.+.. .+|||||+|.+.++|+.|+.. +||..+.|++|+
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~-lng~~l~gr~l~ 103 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEA-FQGYPFQGNPLV 103 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHH-STTCCCTTSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHH-HCCCEeCCCEEE
Confidence 34556899999999999999876 6999999999998864 489999999999999999998 799999999999
Q ss_pred EEeccCCCC
Q psy14139 282 IKWGRAQAN 290 (327)
Q Consensus 282 V~~ak~~~~ 290 (327)
|.|++++..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999987654
No 57
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=9.4e-16 Score=130.97 Aligned_cols=86 Identities=20% Similarity=0.245 Sum_probs=74.5
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCeEEEEeCCHHHHHHHHHHhcCCeEECC--eeE
Q psy14139 205 LDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK--QQCAFIQYTSRPAAEAAVEHSFNKVILGG--RRL 280 (327)
Q Consensus 205 ~~~p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~--kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G--~~L 280 (327)
+.++......+|||+||+..+++++|+++|++||+|.+|.|..+ +++|||+|.+.++|+.|++. ++|..|.| +.|
T Consensus 38 ~~~~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~-LnG~~i~g~g~~L 116 (164)
T 1sjr_A 38 MAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS-LDGQNIYNACCTL 116 (164)
T ss_dssp --CCCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH-STTBCSSSSCSCE
T ss_pred CCCCCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH-hCCCEecCCCcEE
Confidence 33344556789999999999999999999999999999998754 57999999999999999998 79999965 999
Q ss_pred EEEeccCCCCC
Q psy14139 281 NIKWGRAQANR 291 (327)
Q Consensus 281 ~V~~ak~~~~~ 291 (327)
+|.|++++...
T Consensus 117 ~V~~Ak~~~l~ 127 (164)
T 1sjr_A 117 RIDFSKLTSLN 127 (164)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEecCCccc
Confidence 99999987643
No 58
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.6e-16 Score=123.31 Aligned_cols=84 Identities=31% Similarity=0.481 Sum_probs=75.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeE--------EEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCe
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIR--------SVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKV 273 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~--------~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~ 273 (327)
.++...++|||+|||.++++++|+++|++||.|. .++|..+ ++||||+|.+.++|++|++. +++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~-l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEW-FDGK 88 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHH-HTTC
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHH-cCCC
Confidence 3456678999999999999999999999999999 5888764 68999999999999999997 6999
Q ss_pred EECCeeEEEEeccCCCCCC
Q psy14139 274 ILGGRRLNIKWGRAQANRG 292 (327)
Q Consensus 274 ~i~G~~L~V~~ak~~~~~~ 292 (327)
.+.|+.|+|.|++++....
T Consensus 89 ~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp EETTEECEEECSSCCCCST
T ss_pred ccCCCEEEEEECCCCCCCC
Confidence 9999999999999877654
No 59
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=8.8e-16 Score=127.03 Aligned_cols=85 Identities=25% Similarity=0.443 Sum_probs=76.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
+.+...++|||+|||.++++++|+++|+.||+|.+|+|+.+ ++||||+|.+.++|++|++. +++..+.|+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~ 115 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG-LNGFNILNKRLK 115 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH-TTTEECSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH-hCCCEECCeEEE
Confidence 34566789999999999999999999999999999999864 68999999999999999997 799999999999
Q ss_pred EEeccCCCCCCC
Q psy14139 282 IKWGRAQANRGE 293 (327)
Q Consensus 282 V~~ak~~~~~~~ 293 (327)
|.|++++..+..
T Consensus 116 v~~a~~~~~~~~ 127 (139)
T 1u6f_A 116 VALAASGHQRPG 127 (139)
T ss_dssp EEESSCCCCCCC
T ss_pred EEECCCCCCCCC
Confidence 999998876543
No 60
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=8.5e-16 Score=119.93 Aligned_cols=77 Identities=23% Similarity=0.408 Sum_probs=71.6
Q ss_pred CCCccEEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 210 DKTITTLYVGNLGD-KLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 210 d~~~~tLfVgnLp~-~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
.+..++|||+|||. ++++++|+++|++||.|.++.+. +|||||+|.+.++|++|++. ++|..++|+.|+|.|++++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~-l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEX-ESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHH-HTTSEETTEECEEEECCCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHH-cCCCEECCEEEEEEecCCC
Confidence 35568999999998 99999999999999999999985 89999999999999999998 6999999999999999876
Q ss_pred C
Q psy14139 289 A 289 (327)
Q Consensus 289 ~ 289 (327)
.
T Consensus 96 ~ 96 (97)
T 2xnq_A 96 A 96 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 61
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.65 E-value=6.2e-16 Score=123.76 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=70.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+|||.+++|++|+++|++||.|.++.|+.+ +|||||+|.+.++|++|++. +||..+.|+.|+|.++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~-lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN-LHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-HTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 3479999999999999999999999999999999764 58999999999999999998 6999999999999999
Q ss_pred cCCC
Q psy14139 286 RAQA 289 (327)
Q Consensus 286 k~~~ 289 (327)
+...
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7554
No 62
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=5.4e-16 Score=120.21 Aligned_cols=81 Identities=20% Similarity=0.456 Sum_probs=73.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHH----HHHhhcCCeEEEEEec---CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLR----DHFYQFGEIRSVTILS---KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr----~~F~~fG~I~~v~i~~---~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
+....++|||+|||.++++++|+ ++|++||.|.++.+.. .+|+|||+|.+.++|+.|++. ++|..++|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~ 82 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS-MQGFPFYDKPMR 82 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH-HTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH-hCCCEECCcEEE
Confidence 44566899999999999999999 9999999999999873 589999999999999999997 699999999999
Q ss_pred EEeccCCCC
Q psy14139 282 IKWGRAQAN 290 (327)
Q Consensus 282 V~~ak~~~~ 290 (327)
|.|++++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999998654
No 63
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.8e-15 Score=116.53 Aligned_cols=79 Identities=28% Similarity=0.426 Sum_probs=73.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQAN 290 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~ 290 (327)
...++|||+|| ++++++|+++|++||+|.+|.|...++||||+|.+.++|++|+.. +++..+.|+.|+|.|++++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~-l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE-LNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH-TTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH-hCCCeECCeEEEEEECCCCCC
Confidence 34589999996 899999999999999999999998999999999999999999997 799999999999999998765
Q ss_pred CC
Q psy14139 291 RG 292 (327)
Q Consensus 291 ~~ 292 (327)
..
T Consensus 90 ~~ 91 (97)
T 1x5p_A 90 LD 91 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 64
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=125.62 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=74.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCC
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~ 289 (327)
+.+.++|||+|||.++++++|+++|++||.|.++.|...+++|||+|.+.++|+.|++. ++|..+.|+.|+|.|++...
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~-l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRH-LAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHH-HTTCBSSSSBCEEEEEETTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHH-hCCCEECCeEEEEEECCCCc
Confidence 44568999999999999999999999999999999999999999999999999999998 69999999999999998754
Q ss_pred C
Q psy14139 290 N 290 (327)
Q Consensus 290 ~ 290 (327)
.
T Consensus 86 ~ 86 (111)
T 1whx_A 86 F 86 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 65
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-15 Score=116.97 Aligned_cols=78 Identities=22% Similarity=0.440 Sum_probs=72.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhc--CCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQF--GEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~f--G~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
...++|||+|||.++++++|+++|++| |.|.++.+. ++||||+|.+.++|++|+.. +++..+.|+.|+|.|++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKA-LNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHH-HSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHH-hCCCEeCCcEEEEEECCCC
Confidence 456899999999999999999999999 999998876 78999999999999999997 6999999999999999987
Q ss_pred CCC
Q psy14139 289 ANR 291 (327)
Q Consensus 289 ~~~ 291 (327)
...
T Consensus 90 ~~~ 92 (99)
T 2cpd_A 90 DKD 92 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 66
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-16 Score=124.95 Aligned_cols=83 Identities=24% Similarity=0.476 Sum_probs=75.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
+.+...++|||+|||.++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++. ++|..++|+.|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~ 81 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN-LNGREFSGRALR 81 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH-SSSBSCSSSCBE
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH-hCCCeeCCcEEE
Confidence 44566789999999999999999999999999999999864 68999999999999999997 799999999999
Q ss_pred EEeccCCCCC
Q psy14139 282 IKWGRAQANR 291 (327)
Q Consensus 282 V~~ak~~~~~ 291 (327)
|.|++++..+
T Consensus 82 v~~a~~~~~~ 91 (104)
T 1p1t_A 82 VDNAASEKNK 91 (104)
T ss_dssp EEETTCTTHH
T ss_pred EEeCCCccch
Confidence 9999987643
No 67
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=122.61 Aligned_cols=79 Identities=10% Similarity=0.337 Sum_probs=69.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCC--eEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCe----EE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGE--IRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKV----IL 275 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~--I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~----~i 275 (327)
.......||||+|||.+++|++|+++|++||. |.+|+++.+ +|||||+|.+.++|++|++. ++|. .+
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~-lng~~~~~~i 82 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQI-LQSLHPPLKI 82 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHH-HHSSSSCEEE
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHH-hcCCCCCceE
Confidence 34556789999999999999999999999995 678888764 68999999999999999998 5664 69
Q ss_pred CCeeEEEEeccC
Q psy14139 276 GGRRLNIKWGRA 287 (327)
Q Consensus 276 ~G~~L~V~~ak~ 287 (327)
+|++|+|.||++
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999985
No 68
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.7e-15 Score=119.58 Aligned_cols=81 Identities=31% Similarity=0.527 Sum_probs=73.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
..+...++|||+|||.++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++. +++ .+.|+.|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~-~~~g~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD-PNP-IIDGRKAN 89 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC-SSC-EETTEECE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh-CCC-cCCCEEEE
Confidence 45667799999999999999999999999999999999874 58999999999999999996 688 89999999
Q ss_pred EEeccCCCC
Q psy14139 282 IKWGRAQAN 290 (327)
Q Consensus 282 V~~ak~~~~ 290 (327)
|.|+++...
T Consensus 90 V~~a~~~~~ 98 (116)
T 2cqd_A 90 VNLAYLGAK 98 (116)
T ss_dssp EEESTTTCC
T ss_pred EEEcccCCC
Confidence 999987543
No 69
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=7.1e-16 Score=119.07 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=72.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
.+...++|||+|||.++++++|+++|++||+|.++.|..+ +++|||+|.+.++|++|++. +++..+.|+.|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIAL-LNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHH-HTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-hCCCEECCCEEEEE
Confidence 4456689999999999999999999999999999999875 68999999999999999997 69999999999999
Q ss_pred eccC
Q psy14139 284 WGRA 287 (327)
Q Consensus 284 ~ak~ 287 (327)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9874
No 70
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.2e-16 Score=120.40 Aligned_cols=81 Identities=21% Similarity=0.401 Sum_probs=74.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
...++|||+|||.++++++|+++|++||.|.++.+..+ ++||||+|.+.++|++|++. +++..++|+.|+|.|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA-MNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH-HTTCCTTSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 45589999999999999999999999999999999874 68999999999999999987 699999999999999
Q ss_pred ccCCCCCC
Q psy14139 285 GRAQANRG 292 (327)
Q Consensus 285 ak~~~~~~ 292 (327)
++++....
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 99876543
No 71
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=9.5e-16 Score=120.86 Aligned_cols=83 Identities=28% Similarity=0.527 Sum_probs=74.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEE---CCee
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVIL---GGRR 279 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i---~G~~ 279 (327)
.+...++|||+|||.++++++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++|++. +++..+ .|+.
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA-LHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH-HTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH-hcCCcccCCCCce
Confidence 3456689999999999999999999999999999999873 68999999999999999997 688777 8899
Q ss_pred EEEEeccCCCCCC
Q psy14139 280 LNIKWGRAQANRG 292 (327)
Q Consensus 280 L~V~~ak~~~~~~ 292 (327)
|+|.|++++..+.
T Consensus 88 l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 88 IQVKPADSESRGG 100 (106)
T ss_dssp CEEEECCCCSCCC
T ss_pred EEEEECCcccccC
Confidence 9999999877654
No 72
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.64 E-value=8.1e-16 Score=125.14 Aligned_cols=83 Identities=23% Similarity=0.429 Sum_probs=75.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
.....++|||+|||.++++++|+++|++||.|.+|.|+.+ +++|||+|.+.++|++|++. ++|..|+|+.|+|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG-LNGQDLMGQPISV 96 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHH-HTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH-hCCCeeCCeEEEE
Confidence 4456789999999999999999999999999999999865 79999999999999999997 6999999999999
Q ss_pred EeccCCCCCC
Q psy14139 283 KWGRAQANRG 292 (327)
Q Consensus 283 ~~ak~~~~~~ 292 (327)
.|++++....
T Consensus 97 ~~a~~~~~~~ 106 (126)
T 3ex7_B 97 DWCFVRGPPK 106 (126)
T ss_dssp EESEESSSCC
T ss_pred EEecCCCCCC
Confidence 9998776543
No 73
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-15 Score=120.11 Aligned_cols=82 Identities=22% Similarity=0.326 Sum_probs=74.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
....++|||+|||.++++++|+++|++||.|.++.|..+ ++||||+|.+.++|++|++. +++..++|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM-FNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHH-HTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHH-hCCCEeCCCEEEEEE
Confidence 345689999999999999999999999999999999875 68999999999999999997 699999999999999
Q ss_pred ccCCCCCC
Q psy14139 285 GRAQANRG 292 (327)
Q Consensus 285 ak~~~~~~ 292 (327)
++....+.
T Consensus 91 a~~~~~~~ 98 (114)
T 2do0_A 91 DERALPKG 98 (114)
T ss_dssp CSCCCCCS
T ss_pred cccCCCCC
Confidence 98765543
No 74
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.9e-15 Score=116.57 Aligned_cols=77 Identities=30% Similarity=0.379 Sum_probs=71.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
....++|||+|||.++++++|+++|++||.|.++.+..+ +++|||+|.+.++|++|++. +++..++|+.|+|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER-ANGMELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH-HTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH-hCCCEECCEEEEEE
Confidence 355689999999999999999999999999999999754 57999999999999999997 69999999999999
Q ss_pred eccC
Q psy14139 284 WGRA 287 (327)
Q Consensus 284 ~ak~ 287 (327)
|+++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9875
No 75
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.8e-16 Score=125.52 Aligned_cols=79 Identities=18% Similarity=0.293 Sum_probs=71.9
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHh-cCCeEECCeeEEEEeccCCC
Q psy14139 212 TITTLYVGNLGDK-LTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS-FNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 212 ~~~tLfVgnLp~~-ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~-l~g~~i~G~~L~V~~ak~~~ 289 (327)
..++|||+|||.+ ++|++|+++|++||+|.+|+|+..++||||+|.+.++|+.|++.+ .++..+.|++|+|.|++.+.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK 103 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccc
Confidence 3579999999998 999999999999999999999999999999999999999999974 24677999999999998765
Q ss_pred C
Q psy14139 290 N 290 (327)
Q Consensus 290 ~ 290 (327)
.
T Consensus 104 ~ 104 (112)
T 1x4f_A 104 K 104 (112)
T ss_dssp S
T ss_pred c
Confidence 4
No 76
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=118.65 Aligned_cols=79 Identities=20% Similarity=0.381 Sum_probs=72.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeE-EEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCee----
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIR-SVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRR---- 279 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~-~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~---- 279 (327)
...++|||+|||.++++++|+++|++||.|. +++++.+ ++||||+|.+.++|++|++. ++|..+.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~~~~~ 85 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK-INGKPLPGATPAKR 85 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT-TTTSEESSCSSCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH-HcCCccCCCCccee
Confidence 3458999999999999999999999999999 9999875 38999999999999999997 7999999998
Q ss_pred EEEEeccCCCC
Q psy14139 280 LNIKWGRAQAN 290 (327)
Q Consensus 280 L~V~~ak~~~~ 290 (327)
|+|.|+++...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999987754
No 77
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.63 E-value=1.3e-15 Score=121.25 Aligned_cols=77 Identities=25% Similarity=0.468 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCC
Q psy14139 212 TITTLYVGNLGDK-LTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQAN 290 (327)
Q Consensus 212 ~~~tLfVgnLp~~-ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~ 290 (327)
..++|||+|||.+ +++++|+++|++||.|.++.+ .+++|||+|.+.++|++|++. +++..++|+.|+|.|+++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLG-ENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHH-HTTCEETTEECCEEESCCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHH-cCCCEECCeEEEEEECCCCCC
Confidence 4579999999999 999999999999999999998 689999999999999999987 699999999999999986544
Q ss_pred C
Q psy14139 291 R 291 (327)
Q Consensus 291 ~ 291 (327)
.
T Consensus 103 ~ 103 (110)
T 1wf1_A 103 D 103 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 78
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=1.6e-15 Score=115.53 Aligned_cols=76 Identities=24% Similarity=0.517 Sum_probs=70.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
+.++|||+|||.++++++|+++|++||.|.++.+..+ +++|||+|.+.++|++|+ . +++..++|+.|+|.|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~-~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-A-LDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-G-GTTCEETTEECEEEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-h-cCCCEECCcEEEEEEc
Confidence 3479999999999999999999999999999999864 789999999999999999 6 7999999999999999
Q ss_pred cCCC
Q psy14139 286 RAQA 289 (327)
Q Consensus 286 k~~~ 289 (327)
++..
T Consensus 83 ~~~~ 86 (89)
T 3ucg_A 83 RTNR 86 (89)
T ss_dssp TTTS
T ss_pred cCCC
Confidence 8753
No 79
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=8.4e-16 Score=125.08 Aligned_cols=101 Identities=25% Similarity=0.353 Sum_probs=72.0
Q ss_pred CcccCccccCCCCCChhHHHHHHhhcCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEE
Q psy14139 175 LADQNIKDRYYGVNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFI 254 (327)
Q Consensus 175 l~~qni~dr~~G~~~p~~~k~~~~~~~~p~~~~p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV 254 (327)
+..+.++|++.+..++... .. .....++|||+|+ ++++++|+++|++||.|.+|.+...++||||
T Consensus 14 ~~~~~~~d~~~~r~~~~~~-----------~~--~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV 78 (121)
T 2bz2_A 14 LVPRGSHMGPFRRSDSFPE-----------RR--APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV 78 (121)
T ss_dssp ----------------------------------CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEE
T ss_pred ccCCCCCCCCCCCCCCCCC-----------CC--CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEE
Confidence 3455677777665444322 11 1234689999996 6999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCCC
Q psy14139 255 QYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291 (327)
Q Consensus 255 ~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~~ 291 (327)
+|.+.++|++|++. ++|..++|+.|+|.|++++...
T Consensus 79 ~f~~~~~A~~Ai~~-lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 79 TYEKMESADQAVAE-LNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp ECSSHHHHHHHHHH-HTTCBCSSCBCEEEECCSSCC-
T ss_pred EECCHHHHHHHHHH-hCCCEECCeEEEEEEeCCCCCC
Confidence 99999999999997 6999999999999999987654
No 80
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.7e-16 Score=120.68 Aligned_cols=82 Identities=17% Similarity=0.351 Sum_probs=74.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhh-cCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeE-ECCeeEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQ-FGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVI-LGGRRLNI 282 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~-fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~-i~G~~L~V 282 (327)
....++|||+|||.++++++|+++|++ ||.|.++.|+.+ ++||||+|.+.++|++|++. +++.. ++|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~-l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE-CQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH-TTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH-ccCCcccCCEeEEE
Confidence 345689999999999999999999999 999999999875 78999999999999999997 79998 99999999
Q ss_pred EeccCCCCCC
Q psy14139 283 KWGRAQANRG 292 (327)
Q Consensus 283 ~~ak~~~~~~ 292 (327)
.|++++..+.
T Consensus 85 ~~a~~~~~~~ 94 (104)
T 2dhg_A 85 SVAIPKASRV 94 (104)
T ss_dssp CBCCCCCSCC
T ss_pred EEccCCCcCC
Confidence 9998876554
No 81
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.63 E-value=6.6e-16 Score=124.23 Aligned_cols=77 Identities=22% Similarity=0.470 Sum_probs=70.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
.+...++|||+|||.++++++|+++|++||.|.++++..+ ++||||+|.+.++|++|++. ++|..++|+.|+|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~V 114 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA-MNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH-CCCCEETTEECCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH-cCCCEECCEEEEE
Confidence 4556789999999999999999999999999999999864 68999999999999999997 7999999999999
Q ss_pred Eecc
Q psy14139 283 KWGR 286 (327)
Q Consensus 283 ~~ak 286 (327)
.|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9985
No 82
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=9.3e-16 Score=122.12 Aligned_cols=79 Identities=29% Similarity=0.482 Sum_probs=72.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
+...++|||+|||..+++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++. ++|..++|+.|+|.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~-l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ-LNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHH-HTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH-cCCCEECCEEEEEE
Confidence 445689999999999999999999999999999999864 58999999999999999997 69999999999999
Q ss_pred eccCCC
Q psy14139 284 WGRAQA 289 (327)
Q Consensus 284 ~ak~~~ 289 (327)
|++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998874
No 83
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=6.6e-16 Score=119.99 Aligned_cols=79 Identities=23% Similarity=0.385 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCC
Q psy14139 211 KTITTLYVGNLGD-KLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 211 ~~~~tLfVgnLp~-~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~ 289 (327)
...++|||+|||. ++++++|+++|++||.|.++.+. ++||||+|.+.++|+.|++. +++..+.|+.|+|.|++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEC-ESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHH-HTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHH-cCCCeeCCcEEEEEEcCcCC
Confidence 4568999999998 99999999999999999999986 89999999999999999998 69999999999999998776
Q ss_pred CCC
Q psy14139 290 NRG 292 (327)
Q Consensus 290 ~~~ 292 (327)
...
T Consensus 85 ~~~ 87 (96)
T 2kvi_A 85 RPQ 87 (96)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 84
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.3e-15 Score=117.51 Aligned_cols=79 Identities=18% Similarity=0.382 Sum_probs=72.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
...++|||+|||.++++++|+++|++|| |.+|.|+.+ ++||||+|.+.++|++|+ . +++..+.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~-l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-S-LNEESLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-G-GGTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-h-cCCCEeCCcEEEEE
Confidence 4558999999999999999999999999 999999754 689999999999999999 6 79999999999999
Q ss_pred eccCCCCCC
Q psy14139 284 WGRAQANRG 292 (327)
Q Consensus 284 ~ak~~~~~~ 292 (327)
|++++..+.
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 999887654
No 85
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=118.43 Aligned_cols=77 Identities=22% Similarity=0.490 Sum_probs=70.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEE--------EEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRS--------VTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVI 274 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~--------v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~ 274 (327)
.....++|||+|||.++++++|+++|++||.|.+ +++..+ +|+|||+|.+.++|++|++. ++|..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~-l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW-FDGKE 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH-HTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH-hCCCE
Confidence 3455689999999999999999999999999999 888764 58999999999999999997 69999
Q ss_pred ECCeeEEEEecc
Q psy14139 275 LGGRRLNIKWGR 286 (327)
Q Consensus 275 i~G~~L~V~~ak 286 (327)
+.|+.|+|.|++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999985
No 86
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=2.4e-15 Score=114.31 Aligned_cols=75 Identities=25% Similarity=0.453 Sum_probs=68.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
.+...++|||+|||.++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++ +++..++|+.|+|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD--QKEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH--SSCEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH--hCCCEECCEEEEE
Confidence 3456689999999999999999999999999999999864 5799999999999999997 4788999999999
Q ss_pred Eec
Q psy14139 283 KWG 285 (327)
Q Consensus 283 ~~a 285 (327)
+||
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 87
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=119.20 Aligned_cols=83 Identities=22% Similarity=0.378 Sum_probs=75.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
..+...++|||+|||.++++++|+++|++||+|.+|.|+.+ ++||||+|.+.++|++|++. ++..++|+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~--~~~~~~g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS--RPHTLDGRNID 88 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH--CSEEETTEEEB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh--CCCeECCEEEE
Confidence 34566789999999999999999999999999999999875 47999999999999999984 99999999999
Q ss_pred EEeccCCCCCC
Q psy14139 282 IKWGRAQANRG 292 (327)
Q Consensus 282 V~~ak~~~~~~ 292 (327)
|.|++++....
T Consensus 89 V~~a~~~~~~~ 99 (105)
T 2dh8_A 89 PKPCTPRGMQP 99 (105)
T ss_dssp CCCSCCSSCCT
T ss_pred EEEccCCCCCC
Confidence 99999877553
No 88
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=1.7e-15 Score=127.11 Aligned_cols=79 Identities=25% Similarity=0.422 Sum_probs=74.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
....++|||+|||.++++++|+++|++||.|.++++..+ +|||||+|.+.++|+.|+.. ++|..++|++|+|.|++++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRE-LDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHH-HSSSCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHH-cCCCEECCeEEEEEEcCCC
Confidence 345689999999999999999999999999999999987 99999999999999999997 6999999999999999887
Q ss_pred C
Q psy14139 289 A 289 (327)
Q Consensus 289 ~ 289 (327)
+
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 5
No 89
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=121.62 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=72.3
Q ss_pred CccEEEE--cCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEE-----CCeeEEEEe
Q psy14139 212 TITTLYV--GNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVIL-----GGRRLNIKW 284 (327)
Q Consensus 212 ~~~tLfV--gnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i-----~G~~L~V~~ 284 (327)
..++||| |||+.+++|++|+++|++||+|.+|.|..+++||||+|.+.++|++|+++ +||..+ .|++|.|.+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~-lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT-LNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH-TTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH-hCCCEEccccCCCcEEEEEe
Confidence 4578999 88999999999999999999999999998999999999999999999998 699988 689999999
Q ss_pred ccCCCCC
Q psy14139 285 GRAQANR 291 (327)
Q Consensus 285 ak~~~~~ 291 (327)
++..+..
T Consensus 103 a~~~p~~ 109 (114)
T 2cq2_A 103 VEKVQWS 109 (114)
T ss_dssp ESCCCCS
T ss_pred cccCccc
Confidence 9866544
No 90
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.61 E-value=2e-15 Score=121.19 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=69.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEEec--CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFG-EIRSVTILS--KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG-~I~~v~i~~--~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
...+|||+|||.++++++|+++|++|| +|..+.+.. .+|||||+|.+.++|++|++. +||..++|+.|+|.+++..
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~-lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER-LNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH-TTTEEETTEEEEEEESCC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH-cCCCEECCeEEEEEECCCC
Confidence 457999999999999999999999999 999999863 589999999999999999997 7999999999999998755
Q ss_pred C
Q psy14139 289 A 289 (327)
Q Consensus 289 ~ 289 (327)
+
T Consensus 106 p 106 (111)
T 2jvr_A 106 P 106 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 91
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=2.8e-15 Score=118.31 Aligned_cols=76 Identities=25% Similarity=0.397 Sum_probs=70.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
....++|||+|||..+++++|+++|++||.|.++.|..+ +++|||+|.+.++|++|++. +++..+.|+.|+|.|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ-YNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH-HTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH-hCCCEeCCcEEEEEE
Confidence 455689999999999999999999999999999999864 68999999999999999997 699999999999999
Q ss_pred cc
Q psy14139 285 GR 286 (327)
Q Consensus 285 ak 286 (327)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 92
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.8e-15 Score=117.96 Aligned_cols=79 Identities=18% Similarity=0.408 Sum_probs=71.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCC-eEEEEEe-------cCCCeEEEEeCCHHHHHHHHHHhcC--CeEECCeeEE
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGE-IRSVTIL-------SKQQCAFIQYTSRPAAEAAVEHSFN--KVILGGRRLN 281 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~-I~~v~i~-------~~kg~aFV~F~~~~~Ae~A~~~~l~--g~~i~G~~L~ 281 (327)
..++|||+|||.++++++|+++|++||. |.++.+. ..++||||+|.+.++|+.|++. ++ +..++|+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK-LMPGRIQLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT-TTTCCSCBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH-hhCCCceecCCeEE
Confidence 4589999999999999999999999998 9999998 4589999999999999999997 54 5899999999
Q ss_pred EEeccCCCCC
Q psy14139 282 IKWGRAQANR 291 (327)
Q Consensus 282 V~~ak~~~~~ 291 (327)
|.|++++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999987654
No 93
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=3.8e-15 Score=125.78 Aligned_cols=80 Identities=30% Similarity=0.441 Sum_probs=73.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
...++|||+|||.++++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|++|++. +++..|+|+.|+|.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~-l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY-INGTRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-TTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 35689999999999999999999999999999999764 47999999999999999997 799999999999999
Q ss_pred ccCCCCC
Q psy14139 285 GRAQANR 291 (327)
Q Consensus 285 ak~~~~~ 291 (327)
+++....
T Consensus 116 a~~~~~~ 122 (156)
T 1h2v_Z 116 DAGFKEG 122 (156)
T ss_dssp ESCCCTT
T ss_pred CCCCCCc
Confidence 9876553
No 94
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=4.1e-15 Score=118.48 Aligned_cols=81 Identities=16% Similarity=0.370 Sum_probs=70.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
+...++|||+|||.++++++|+++|++||.|.+++|..+ +|||||+|.+.++|++|++. + +..++|+.|+|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~-~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-S-RHELDSKTIDPK 99 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHS-S-CEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHH-C-CCcCCCEEEEEE
Confidence 345689999999999999999999999999999999864 68999999999999999995 3 599999999999
Q ss_pred eccCCCCCC
Q psy14139 284 WGRAQANRG 292 (327)
Q Consensus 284 ~ak~~~~~~ 292 (327)
|+.++..+.
T Consensus 100 ~a~~~~~~~ 108 (109)
T 2rs2_A 100 VAFPRRAQP 108 (109)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 999876553
No 95
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.1e-15 Score=115.63 Aligned_cols=78 Identities=26% Similarity=0.455 Sum_probs=69.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEe--cCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTIL--SKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~--~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
...++|||+|||.++++++|+++|++||.|. +.++ ..++||||+|.+.++|++|++. ++|..++|+.|+|.|++++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSC-LQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHH-HTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHH-hCCCEECCcEEEEEEcCCC
Confidence 3457999999999999999999999999996 4554 4589999999999999999997 6999999999999999987
Q ss_pred CC
Q psy14139 289 AN 290 (327)
Q Consensus 289 ~~ 290 (327)
..
T Consensus 95 ~~ 96 (97)
T 2e5j_A 95 RD 96 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 96
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.60 E-value=1.8e-15 Score=124.44 Aligned_cols=80 Identities=29% Similarity=0.395 Sum_probs=73.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
....++|||+|||.++++++|+++|++||+|.+|.+..+ ++||||+|.+.++|++|++. ++|..|+|+.|+|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~-lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER-ANGMELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH-HTTCCSSSSCCEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH-hCCCEECCEEEEEE
Confidence 345689999999999999999999999999999999853 68999999999999999997 69999999999999
Q ss_pred eccCCCC
Q psy14139 284 WGRAQAN 290 (327)
Q Consensus 284 ~ak~~~~ 290 (327)
|++++..
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9988764
No 97
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=119.39 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=70.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS-----KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~-----~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
.+...++|||+|||.++++++|+++|++||.|.+|+|+. .+|||||+|.+.++|++|+. +++..++|+.|+|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~--~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE--TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT--SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH--cCCCEECCEEEEEE
Confidence 345568999999999999999999999999999999986 37999999999999999998 59999999999999
Q ss_pred eccC
Q psy14139 284 WGRA 287 (327)
Q Consensus 284 ~ak~ 287 (327)
|+..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 9875
No 98
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=9.2e-15 Score=114.75 Aligned_cols=80 Identities=21% Similarity=0.416 Sum_probs=72.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
+...++|||+|||.++++++|+++|++|| |.+|.|+.+ ++||||+|.+.++|++|+ . +++..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~-l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-T-YDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-G-GTTCEETTEECEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-h-hCCCeECCeEEEEE
Confidence 34568999999999999999999999997 999999865 579999999999999999 6 79999999999999
Q ss_pred eccCCCCCC
Q psy14139 284 WGRAQANRG 292 (327)
Q Consensus 284 ~ak~~~~~~ 292 (327)
|++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 999876554
No 99
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.8e-15 Score=118.89 Aligned_cols=79 Identities=24% Similarity=0.438 Sum_probs=72.5
Q ss_pred CCccEEEEcCCCCCCCHHHHH---HHHhhcCCeEEEEEecCC---------CeEEEEeCCHHHHHHHHHHhcCCeEECCe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLR---DHFYQFGEIRSVTILSKQ---------QCAFIQYTSRPAAEAAVEHSFNKVILGGR 278 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr---~~F~~fG~I~~v~i~~~k---------g~aFV~F~~~~~Ae~A~~~~l~g~~i~G~ 278 (327)
...++|||+|||.++++++|+ ++|++||+|.++.|..++ |||||+|.+.++|++|++. ++|..++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~-lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC-VNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH-HTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH-hCCCEECCE
Confidence 345799999999999999999 999999999999998643 6999999999999999997 699999999
Q ss_pred eEEEEeccCCCC
Q psy14139 279 RLNIKWGRAQAN 290 (327)
Q Consensus 279 ~L~V~~ak~~~~ 290 (327)
.|+|.|++++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999998763
No 100
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.60 E-value=4.9e-16 Score=119.32 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=64.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcC--CeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFG--EIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG--~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
.+|||+|||.++++++|+++|++|| .|.+++++.+ +|||||+|.+.++|++|++. ++|..++|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~-l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL-LPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHH-GGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHH-cCCCeeCCEEEEEEEC
Confidence 4899999999999999999999999 9999999874 58999999999999999997 7999999999999998
Q ss_pred cCCCCC
Q psy14139 286 RAQANR 291 (327)
Q Consensus 286 k~~~~~ 291 (327)
.+....
T Consensus 81 ~~~~~~ 86 (90)
T 3p5t_L 81 NKLEHH 86 (90)
T ss_dssp ------
T ss_pred CCCccc
Confidence 876543
No 101
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=8.9e-15 Score=112.14 Aligned_cols=79 Identities=14% Similarity=0.299 Sum_probs=72.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
....++|||+|||.++++++|+++|++| .|.+++|+.+ +|+|||+|.+.++|++|+. +++..++|+.|+|.|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~--~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK--CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH--SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH--hCCceeCCcEEEEEE
Confidence 4456899999999999999999999999 9999999875 6899999999999999998 599999999999999
Q ss_pred ccCCCCC
Q psy14139 285 GRAQANR 291 (327)
Q Consensus 285 ak~~~~~ 291 (327)
+++++..
T Consensus 84 a~~~~~s 90 (91)
T 2dgw_A 84 EKSGPSS 90 (91)
T ss_dssp ESSCCCC
T ss_pred CCcCCCC
Confidence 9887543
No 102
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=7e-15 Score=114.93 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=69.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS-----KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~-----~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
.+...++|||+|||.++++++|+++|++||.| +++. .++||||+|.+.++|++|++. +++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNS-CNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHH-TSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHH-hCCCEeCCeEEEEE
Confidence 34556899999999999999999999999988 3333 379999999999999999997 79999999999999
Q ss_pred eccCCCCC
Q psy14139 284 WGRAQANR 291 (327)
Q Consensus 284 ~ak~~~~~ 291 (327)
|++++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99987654
No 103
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=3.7e-15 Score=120.84 Aligned_cols=78 Identities=31% Similarity=0.532 Sum_probs=71.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+|||.++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|+ . ++|..++|+.|+|.|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~-l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-A-MDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-T-TTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-h-cCCCeECCeEEEEEEC
Confidence 3579999999999999999999999999999999864 689999999999999999 6 7999999999999999
Q ss_pred cCCCCC
Q psy14139 286 RAQANR 291 (327)
Q Consensus 286 k~~~~~ 291 (327)
++....
T Consensus 113 ~~~~~~ 118 (124)
T 2jwn_A 113 RTNMPG 118 (124)
T ss_dssp SCCCSS
T ss_pred CCCCCC
Confidence 876543
No 104
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-14 Score=112.37 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=72.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
.+...++|||+|||.++++++|+++|++||.|.++.|+.+ ++||||+|.+.++|++|+. ++..++|+.|+|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~---~~~~~~g~~l~v 87 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS---QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH---SCEEETTEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH---cCCeeCCeEEEE
Confidence 4456689999999999999999999999999999999875 5799999999999999997 468999999999
Q ss_pred EeccCCCCCC
Q psy14139 283 KWGRAQANRG 292 (327)
Q Consensus 283 ~~ak~~~~~~ 292 (327)
.|++++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqg_A 88 KLPNSKQSQD 97 (103)
T ss_dssp ECCCTTCCCC
T ss_pred EecCCCCcCC
Confidence 9999876543
No 105
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.8e-15 Score=117.99 Aligned_cols=81 Identities=22% Similarity=0.452 Sum_probs=73.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
...++|||+|||.++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++. ++..++|+.|+|.|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~--~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA--RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS--CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh--CCcEECCEEEEEEE
Confidence 34589999999999999999999999999999999874 68999999999999999984 99999999999999
Q ss_pred ccCCCCCCC
Q psy14139 285 GRAQANRGE 293 (327)
Q Consensus 285 ak~~~~~~~ 293 (327)
++++.....
T Consensus 103 a~~~~~~~~ 111 (116)
T 1x4b_A 103 AVAREESGS 111 (116)
T ss_dssp CSSCCCCCC
T ss_pred CCCCccCCC
Confidence 998876543
No 106
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=1.4e-14 Score=118.39 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=71.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCe-EEEEeCCHHHHHHHHHHhcCCeEECC--eeEEEEeccCC
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC-AFIQYTSRPAAEAAVEHSFNKVILGG--RRLNIKWGRAQ 288 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~-aFV~F~~~~~Ae~A~~~~l~g~~i~G--~~L~V~~ak~~ 288 (327)
.+..|||+||+..+++++|+++|++||+|.+|+|....|+ |||+|.+.++|+.|+++ |+|..|.| +.|+|.|++++
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~-LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAA-LNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHH-HTTCCCBTTBSEEEEECCSCS
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHH-hCCCEecCCCeEEEEEEecCC
Confidence 3456889999999999999999999999999999877796 99999999999999998 69999987 68999999987
Q ss_pred CCC
Q psy14139 289 ANR 291 (327)
Q Consensus 289 ~~~ 291 (327)
.-.
T Consensus 103 ~l~ 105 (124)
T 2e5i_A 103 RLN 105 (124)
T ss_dssp CCC
T ss_pred cce
Confidence 643
No 107
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.59 E-value=1e-14 Score=123.11 Aligned_cols=81 Identities=26% Similarity=0.445 Sum_probs=74.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
....++|||+|||.++++++|+++|++||.|.+++|..+ +|||||+|.+.++|++|++. ++|..++|+.|+|.
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA-MDGAVLDGRELRVQ 145 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH-STTEESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH-hCCCEECCeEEEEE
Confidence 345689999999999999999999999999999999864 68999999999999999997 79999999999999
Q ss_pred eccCCCCC
Q psy14139 284 WGRAQANR 291 (327)
Q Consensus 284 ~ak~~~~~ 291 (327)
|++++..+
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99987654
No 108
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=115.72 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=70.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
+...++|||+|||.++++++|+++|++||.|.++.++.+ +++|||+|.+.++|++|++. +++..+.|+.|+|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID-LNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHH-TTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHH-hCCCeeCCeEEEEE
Confidence 345689999999999999999999999999987666542 69999999999999999997 79999999999999
Q ss_pred eccCCC
Q psy14139 284 WGRAQA 289 (327)
Q Consensus 284 ~ak~~~ 289 (327)
|++.+.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 988654
No 109
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=6.5e-15 Score=116.40 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=70.6
Q ss_pred CCccEEEEcCCCCCC------CHHHHHHHHhhcCCeEEEEEec----CCCeEEEEeCCHHHHHHHHHHhcCCeEECCe-e
Q psy14139 211 KTITTLYVGNLGDKL------TEQDLRDHFYQFGEIRSVTILS----KQQCAFIQYTSRPAAEAAVEHSFNKVILGGR-R 279 (327)
Q Consensus 211 ~~~~tLfVgnLp~~i------te~~Lr~~F~~fG~I~~v~i~~----~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~-~ 279 (327)
...++|||+|||..+ ++++|+++|++||.|.++.|.. .+|||||+|.+.++|++|+.. ++|..+.|+ .
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~-l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN-ADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHH-CSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHH-hCCcccCCCce
Confidence 345799999999999 7899999999999999999884 379999999999999999997 799999998 9
Q ss_pred EEEEeccCCC
Q psy14139 280 LNIKWGRAQA 289 (327)
Q Consensus 280 L~V~~ak~~~ 289 (327)
|+|.|+....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999997654
No 110
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.59 E-value=6.1e-15 Score=125.91 Aligned_cols=82 Identities=20% Similarity=0.426 Sum_probs=73.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
....++|||+|||..+++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|+.|+.. ++|..|.|+.|+|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~-l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA-LNGAEIMGQTIQVD 147 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH-HTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHH-hCCCEECCEEEEEE
Confidence 455689999999999999999999999999999999875 69999999999999999997 69999999999999
Q ss_pred eccCCCCCC
Q psy14139 284 WGRAQANRG 292 (327)
Q Consensus 284 ~ak~~~~~~ 292 (327)
|++++..+.
T Consensus 148 ~a~~~~~~~ 156 (165)
T 1rk8_A 148 WCFVKGPKR 156 (165)
T ss_dssp ESEECC---
T ss_pred EecCCCCCC
Confidence 999876654
No 111
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.6e-15 Score=118.52 Aligned_cols=80 Identities=28% Similarity=0.450 Sum_probs=71.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEE--------
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVIL-------- 275 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i-------- 275 (327)
.+...++|||+|||.++++++|+++|++||.|.+++|..+ ++||||+|.+.++|++|++. ++|..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~-l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH-FNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH-HBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH-hCCCEEcCCccccC
Confidence 3455689999999999999999999999999999999875 68999999999999999997 699988
Q ss_pred CCeeEEEEeccCCC
Q psy14139 276 GGRRLNIKWGRAQA 289 (327)
Q Consensus 276 ~G~~L~V~~ak~~~ 289 (327)
.+++|+|.|++++.
T Consensus 100 ~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 100 PTEPLLCKFSGPSS 113 (114)
T ss_dssp CSSCBEEEECCCSC
T ss_pred CCCceeEEccCCCC
Confidence 57889999998653
No 112
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=1.1e-14 Score=118.13 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=72.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
...++|||+|||.++++++|+++|++||.|.++.|..+ +|+|||+|.+.++|++|++. ++|..++|+.|+|.|+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~-l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ-YKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHH-HTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHH-cCCCEECCcEEEEEEe
Confidence 45689999999999999999999999999999999873 79999999999999999997 6999999999999999
Q ss_pred cCCC
Q psy14139 286 RAQA 289 (327)
Q Consensus 286 k~~~ 289 (327)
.+..
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 8654
No 113
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=4.7e-15 Score=113.31 Aligned_cols=76 Identities=17% Similarity=0.320 Sum_probs=70.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCC
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~ 289 (327)
..++|||+|||.++++++|+++|++| +|.++++...+|+|||+|.+.++|++|++. ++|..++|+.|+|.|+....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~-l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQM-FHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHH-HTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHH-hCCCeECCcEEEEEEcCCCc
Confidence 45799999999999999999999999 999999988899999999999999999997 69999999999999986543
No 114
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.58 E-value=1.6e-15 Score=118.95 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=70.7
Q ss_pred CccEEEEcCCCC------CCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECC-e
Q psy14139 212 TITTLYVGNLGD------KLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGG-R 278 (327)
Q Consensus 212 ~~~tLfVgnLp~------~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G-~ 278 (327)
..++|||+|||. ++++++|+++|++||.|.+++|+.+ +|||||+|.+.++|++|++. ++|..+.| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~-lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKS-FHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH-HTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH-hCCcccCCCe
Confidence 357999999999 9999999999999999999998753 69999999999999999997 69999999 9
Q ss_pred eEEEEeccCCC
Q psy14139 279 RLNIKWGRAQA 289 (327)
Q Consensus 279 ~L~V~~ak~~~ 289 (327)
.|+|.|+.+..
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999998753
No 115
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=7.4e-15 Score=113.63 Aligned_cols=82 Identities=24% Similarity=0.348 Sum_probs=71.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTIL-SKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~-~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
.+...++|||+|||.++++++|+++|++||.|..+... ..+|+|||+|.+.++|++|++. ++|..++|+.|+|.|+++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEE-KQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHH-TTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHH-hCCCEECCeEEEEEEcCC
Confidence 34567899999999999999999999999998877111 1378999999999999999997 799999999999999998
Q ss_pred CCCC
Q psy14139 288 QANR 291 (327)
Q Consensus 288 ~~~~ 291 (327)
+...
T Consensus 91 ~~~~ 94 (96)
T 1fjc_A 91 KGGT 94 (96)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 116
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=118.95 Aligned_cols=77 Identities=19% Similarity=0.381 Sum_probs=68.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
....++|||+|||.++++++|+++|++|| |.+++|..+ +|||||+|.+.++|++|+ . ++|..++|+.|+|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~-l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-S-LNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-H-TTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-h-cCCCEECCeEEEE
Confidence 35568999999999999999999999999 999999764 589999999999999999 6 7999999999999
Q ss_pred EeccCCC
Q psy14139 283 KWGRAQA 289 (327)
Q Consensus 283 ~~ak~~~ 289 (327)
.|++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 117
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.58 E-value=2e-15 Score=125.02 Aligned_cols=85 Identities=27% Similarity=0.495 Sum_probs=76.2
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeE
Q psy14139 207 PPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRL 280 (327)
Q Consensus 207 ~p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L 280 (327)
++.+...++|||+|||.++++++|+++|++||.|.+|.|..+ +|||||+|.+.++|++|++. +++..++|+.|
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~-l~g~~i~g~~l 119 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA-MDGAVLDGREL 119 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTT-TTTCCSSSSCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH-cCCCEECCEEE
Confidence 345566789999999999999999999999999999999764 68999999999999999997 79999999999
Q ss_pred EEEeccCCCCCC
Q psy14139 281 NIKWGRAQANRG 292 (327)
Q Consensus 281 ~V~~ak~~~~~~ 292 (327)
+|.|+++.....
T Consensus 120 ~V~~a~~~~~~~ 131 (135)
T 2lea_A 120 RVQMARYGRPPD 131 (135)
T ss_dssp EEEECCCCCCCT
T ss_pred EEEECCCCCCCc
Confidence 999999876543
No 118
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=119.83 Aligned_cols=75 Identities=28% Similarity=0.518 Sum_probs=69.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
+...++|||+|||.++++++|+++|++||.|.++++..+ +++|||+|.+.++|++|++. ++|..++|+.|+|.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN-MNESELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH-STEEEETTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH-hCCCEECCEEEEEE
Confidence 345689999999999999999999999999999999764 79999999999999999997 79999999999999
Q ss_pred ec
Q psy14139 284 WG 285 (327)
Q Consensus 284 ~a 285 (327)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 119
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.57 E-value=8.7e-15 Score=117.09 Aligned_cols=79 Identities=25% Similarity=0.392 Sum_probs=72.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK---QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~---kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
..++|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|++. ++|..++|+.|+|.|++++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDH-LSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHH-HTTCBSSSCBCEEEECCHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHH-cCCCEECCeEEEEEEecCC
Confidence 3479999999999999999999999999999999764 68999999999999999997 6999999999999999976
Q ss_pred CCC
Q psy14139 289 ANR 291 (327)
Q Consensus 289 ~~~ 291 (327)
...
T Consensus 86 ~~~ 88 (115)
T 3lqv_A 86 RAF 88 (115)
T ss_dssp HHT
T ss_pred hhh
Confidence 544
No 120
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=7.7e-15 Score=112.75 Aligned_cols=77 Identities=22% Similarity=0.430 Sum_probs=62.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~ 289 (327)
....+|||+|||.+++|++|+++|++||.|.+++|+.+ +|||||+|.+.++|+++. -....+.|+.|.|.+++++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~---~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLC---GEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHHT---TCEEEETTEEEEEEECC---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHHc---CCCcccCCEEEEEEEcCCCC
Confidence 44579999999999999999999999999999999875 899999999999998431 12345679999999999875
Q ss_pred C
Q psy14139 290 N 290 (327)
Q Consensus 290 ~ 290 (327)
.
T Consensus 86 ~ 86 (89)
T 3d2w_A 86 N 86 (89)
T ss_dssp -
T ss_pred c
Confidence 4
No 121
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.6e-15 Score=120.10 Aligned_cols=80 Identities=23% Similarity=0.426 Sum_probs=72.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
+...++|||+|||.++++++|+++|++||.|.+|.|+. .+|||||+|.+.++|++|+ . +++..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~-l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-G-LTGQRLLGVPIIVQ 99 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-H-HTTEEETTEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-H-cCCCEeCCeEEEEE
Confidence 34568999999999999999999999999999999975 3689999999999999999 6 69999999999999
Q ss_pred eccCCCCC
Q psy14139 284 WGRAQANR 291 (327)
Q Consensus 284 ~ak~~~~~ 291 (327)
|++++..+
T Consensus 100 ~a~~~~~~ 107 (114)
T 2cq4_A 100 ASQAEKNR 107 (114)
T ss_dssp EHHHHHHH
T ss_pred ecCCCccC
Confidence 99876543
No 122
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.57 E-value=5.3e-15 Score=118.94 Aligned_cols=81 Identities=15% Similarity=0.299 Sum_probs=67.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCee-----EEE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRR-----LNI 282 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~-----L~V 282 (327)
|......+|||+|||.++++++|+++|++||+|.++.|+.+ +||||+|.+.++|++|++. +++..|+|+. |+|
T Consensus 11 p~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~-l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 11 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRK-LDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp ------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHH-HTTCBCCCTTSCCCBCEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHH-hCCCEECCcEeeeEEEEe
Confidence 33456689999999999999999999999999999999877 9999999999999999997 6999999988 888
Q ss_pred EeccCCCC
Q psy14139 283 KWGRAQAN 290 (327)
Q Consensus 283 ~~ak~~~~ 290 (327)
..+.++..
T Consensus 89 ~~~~~~~~ 96 (115)
T 3beg_B 89 KVDGPRSP 96 (115)
T ss_dssp EECC----
T ss_pred ccCCCCCC
Confidence 87776544
No 123
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-15 Score=115.15 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=68.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+|||.++++++|+++|++||.|.++.+..+ ++||||+|.+.++|++|++. ++|..+.|+.|+|.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA-LKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHH-HHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH-hcCCeEeeEEEeecCC
Confidence 4579999999999999999999999999999999875 68999999999999999997 6999999999998776
Q ss_pred cC
Q psy14139 286 RA 287 (327)
Q Consensus 286 k~ 287 (327)
++
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 124
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=116.04 Aligned_cols=80 Identities=29% Similarity=0.436 Sum_probs=71.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCe----EEEEEec--CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEI----RSVTILS--KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I----~~v~i~~--~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+|||.++++++|+++|++||.| ..+.+.. .++||||+|.+.++|++|++. +++..+.|+.|+|.|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL-VNGYKLYGKILVIEFG 102 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHH-STTCBCSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHH-hCCCEeCCcEEEEEEc
Confidence 45899999999999999999999999998 5666554 379999999999999999997 7999999999999999
Q ss_pred cCCCCCC
Q psy14139 286 RAQANRG 292 (327)
Q Consensus 286 k~~~~~~ 292 (327)
+++..+.
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpx_A 103 KNKKQRS 109 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCCC
Confidence 9877654
No 125
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=1.4e-15 Score=116.33 Aligned_cols=76 Identities=20% Similarity=0.423 Sum_probs=66.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
++|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.+ |++|+.. ++|..++|+.|+|.|+.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~-l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAK-LDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHT-SCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHH-hCCCEECCeEEEEEEcCC
Confidence 68999999999999999999999999999999864 689999999999 9999997 799999999999999987
Q ss_pred CCCC
Q psy14139 288 QANR 291 (327)
Q Consensus 288 ~~~~ 291 (327)
....
T Consensus 80 ~~~~ 83 (90)
T 2ki2_A 80 KKSL 83 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 126
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.2e-14 Score=110.83 Aligned_cols=79 Identities=20% Similarity=0.353 Sum_probs=68.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCC-eEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ-CAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg-~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~ 289 (327)
...++|||+|||.++++++|+++|++||.|.+|.+....+ ||||+|.+.++|++|++ +++..++|+.|+|.++.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~--l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS--QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT--CSCCEETTEECCCBCSCCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh--cCCeEECCEEEEEEECCcCC
Confidence 3457999999999999999999999999999983332222 99999999999999998 69999999999999887665
Q ss_pred CC
Q psy14139 290 NR 291 (327)
Q Consensus 290 ~~ 291 (327)
..
T Consensus 84 ~~ 85 (94)
T 2e5g_A 84 FQ 85 (94)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 127
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2e-14 Score=111.23 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=70.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEE-EecC--CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVT-ILSK--QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~-i~~~--kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
....++|||+|||.++++++|+++|++||.|.+++ ++.+ .+.|||+|.+.++|++|+.. ++|..++|+.|+|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~-l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDK-LNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHH-HTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHH-hCCCEECCcEEEEEEcC
Confidence 34568999999999999999999999999999994 7665 35599999999999999997 69999999999999999
Q ss_pred CCC
Q psy14139 287 AQA 289 (327)
Q Consensus 287 ~~~ 289 (327)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 873
No 128
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=123.85 Aligned_cols=77 Identities=17% Similarity=0.269 Sum_probs=70.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcC--CeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFG--EIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG--~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
..++|||+|||.+++|++|+++|++|| .|.+|+|+.+ +|||||+|.+.++|++|++. ++|..|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~-lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL-LPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH-STTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH-cCCCEECCeEeEEE
Confidence 457999999999999999999999999 9999999864 58999999999999999997 79999999999999
Q ss_pred eccCCC
Q psy14139 284 WGRAQA 289 (327)
Q Consensus 284 ~ak~~~ 289 (327)
|+.++.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 998654
No 129
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=3.6e-14 Score=116.81 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=72.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCe-EEEEeCCHHHHHHHHHHhcCCeEECC--eeEEEEecc
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-QQC-AFIQYTSRPAAEAAVEHSFNKVILGG--RRLNIKWGR 286 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-kg~-aFV~F~~~~~Ae~A~~~~l~g~~i~G--~~L~V~~ak 286 (327)
...-.|||+||+..+++++|+++|++||+|.+|++..+ +++ |||+|.+.++|+.|+++ ++|..|.| +.|+|.|++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~-LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS-LDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-HTTCEEETTEEEEEEEECS
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHH-cCCCeecCCCcEEEEEecC
Confidence 45678999999999999999999999999999988764 677 99999999999999998 69999988 899999999
Q ss_pred CCCCC
Q psy14139 287 AQANR 291 (327)
Q Consensus 287 ~~~~~ 291 (327)
+..-.
T Consensus 105 ~~~l~ 109 (130)
T 3zzy_A 105 LTSLN 109 (130)
T ss_dssp CSSCC
T ss_pred CCcee
Confidence 87654
No 130
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=2e-14 Score=108.94 Aligned_cols=72 Identities=29% Similarity=0.508 Sum_probs=67.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhc----C-------CeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCee
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQF----G-------EIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRR 279 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~f----G-------~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~ 279 (327)
...++|||+|||.++++++|+++|++| | .|.++.+..+++||||+|.+.++|++|+ . ++|..++|+.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~-l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-A-FDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-G-GTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-h-cCCCEECCeE
Confidence 456899999999999999999999999 8 9999999999999999999999999999 6 7999999999
Q ss_pred EEEEe
Q psy14139 280 LNIKW 284 (327)
Q Consensus 280 L~V~~ 284 (327)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99963
No 131
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.55 E-value=9.4e-15 Score=120.04 Aligned_cols=81 Identities=16% Similarity=0.350 Sum_probs=72.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEE--EEEecC------CCeEEEEeCCHHHHHHHHHHhcCCe----EEC
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRS--VTILSK------QQCAFIQYTSRPAAEAAVEHSFNKV----ILG 276 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~--v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~----~i~ 276 (327)
.+...++|||+|||.+++|++|+++|++||.|.. |+|+.+ +|||||+|.+. +|++|+.. ++|. .++
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~-l~g~~~~~~~~ 96 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQI-LQALHPPLTID 96 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHH-HTTCCCSCCGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHH-hcCCCCCccCC
Confidence 3455689999999999999999999999999977 888764 69999999999 99999997 6999 999
Q ss_pred CeeEEEEeccCCCCC
Q psy14139 277 GRRLNIKWGRAQANR 291 (327)
Q Consensus 277 G~~L~V~~ak~~~~~ 291 (327)
|+.|+|.|+++....
T Consensus 97 gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 GKTINVEFAKGSKRD 111 (131)
T ss_dssp GCCCCCEECCCSCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 999999999987554
No 132
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=111.14 Aligned_cols=77 Identities=23% Similarity=0.466 Sum_probs=67.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCCC
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~~ 291 (327)
.++|||+|||.++++++|+++|++||.|.++++..+ ++||||+|.+.++|++|.. ....+.|+.|+|.|++++...
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~---~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG---EDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT---CEEEETTEEEEEECCCCCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc---CCceeCCEEEEEEecCCCCCC
Confidence 489999999999999999999999999999999875 8999999999999986532 346779999999999987654
Q ss_pred C
Q psy14139 292 G 292 (327)
Q Consensus 292 ~ 292 (327)
.
T Consensus 82 ~ 82 (88)
T 1wf0_A 82 N 82 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 133
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.8e-15 Score=109.78 Aligned_cols=70 Identities=19% Similarity=0.441 Sum_probs=65.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
++|||+|||.++++++|+++|++||+|.++.+..+ +|+|||+|.+.++|++|++. ++ ..++|+.|+|+|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHT-TT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHh-CC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999874 58999999999999999997 57 9999999999987
No 134
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.6e-14 Score=111.79 Aligned_cols=80 Identities=23% Similarity=0.471 Sum_probs=69.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
....++|||+|||.++++++|+++|+.|+. +.++.+ ++||||+|.+.++|++|++. +++..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA-MEDGEIDGNKVTLD 87 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSCSEEEEEEEECSSHHHHHHHHHH-HTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCCCcCcEEEEEECCHHHHHHHHHH-hCCCeECCeEEEEE
Confidence 455689999999999999999999998864 444433 58999999999999999997 69999999999999
Q ss_pred eccCCCCCCC
Q psy14139 284 WGRAQANRGE 293 (327)
Q Consensus 284 ~ak~~~~~~~ 293 (327)
|++++..++.
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 2fc8_A 88 WAKPKGEGGS 97 (102)
T ss_dssp ECCCCCSSSC
T ss_pred EecCCCCCCC
Confidence 9998876543
No 135
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.54 E-value=6.4e-15 Score=108.78 Aligned_cols=69 Identities=20% Similarity=0.393 Sum_probs=64.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 215 tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
+|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|++ +++..++|+.|+|+||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE--IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS--SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH--CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999998764 5899999999999999987 6999999999999986
No 136
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.53 E-value=4.9e-14 Score=118.30 Aligned_cols=91 Identities=25% Similarity=0.426 Sum_probs=77.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCC------CeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQ------QCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~k------g~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
.++|||+|||.++++++|+++|++||.|.++.+..++ |+|||+|.+.++|++|++. ++|..+.|+.|+|.|+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~-l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT-LNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-HTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH-cCCCccCCceEEEEecC
Confidence 4799999999999999999999999999999998764 8999999999999999997 69999999999999998
Q ss_pred CCCCCCCCcccccccccCCCCCCC
Q psy14139 287 AQANRGEDTAELKVRLEPVPGLPG 310 (327)
Q Consensus 287 ~~~~~~~~~~~~~~~~~pv~Glp~ 310 (327)
+..... .....+ |.|||.
T Consensus 81 ~~~~~~----~~~~l~--v~nl~~ 98 (167)
T 1fxl_A 81 PSSASI----RDANLY--VSGLPK 98 (167)
T ss_dssp CCCGGG----TTCEEE--EESCCT
T ss_pred CCcccC----CCCcEE--ECCCCC
Confidence 765322 122234 667753
No 137
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.53 E-value=8.7e-15 Score=112.90 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=67.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+|||.++++++|+++|++||.|.++.++. .+++|||+|.+.++|++|++. +++..+.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID-LNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHH-HTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHH-hCCCeECCcEEEEEec
Confidence 348999999999999999999999999998777664 268999999999999999997 6999999999999987
Q ss_pred cC
Q psy14139 286 RA 287 (327)
Q Consensus 286 k~ 287 (327)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 138
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=108.68 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=63.0
Q ss_pred cEEEEcCCCCCC------CHHHHHHHHhhcCCeEEEEEec----CCCeEEEEeCCHHHHHHHHHHhcCCeEECCe-eEEE
Q psy14139 214 TTLYVGNLGDKL------TEQDLRDHFYQFGEIRSVTILS----KQQCAFIQYTSRPAAEAAVEHSFNKVILGGR-RLNI 282 (327)
Q Consensus 214 ~tLfVgnLp~~i------te~~Lr~~F~~fG~I~~v~i~~----~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~-~L~V 282 (327)
++|||+|||..+ ++++|+++|++||.|.++.+.. .+|||||+|.+.++|++|++. ++|..++|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~-lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN-ADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT-SSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH-hcCcccCCceeEEe
Confidence 689999999999 7799999999999999999874 379999999999999999997 799999999 8876
No 139
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=3.2e-14 Score=118.35 Aligned_cols=81 Identities=23% Similarity=0.406 Sum_probs=70.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEE--------EEEe---cCCCeEEEEeCCHHHHHHHHHHhcCCeEECCee
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRS--------VTIL---SKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRR 279 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~--------v~i~---~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~ 279 (327)
...++|||+|||.++++++|+++|++||.|.+ +++. ..+|||||+|.+.++|++|+.. ++|..+.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~-lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKE-ANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHH-HTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHH-hCCCEeCCcE
Confidence 44589999999999999999999999999876 3333 2479999999999999999997 6999999999
Q ss_pred EEEEeccCCCCCC
Q psy14139 280 LNIKWGRAQANRG 292 (327)
Q Consensus 280 L~V~~ak~~~~~~ 292 (327)
|+|.|+++...+.
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999998876554
No 140
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.5e-14 Score=114.64 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=70.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCe-EEEEEec-----CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEI-RSVTILS-----KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I-~~v~i~~-----~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
...++|||+|||.++++++|+++|++||.| .+|+|+. .+|||||+|.+.++|++|++. ++..|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~--~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL--HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG--CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh--CCCccCCeEEEEEE
Confidence 345799999999999999999999999999 8898876 479999999999999999983 99999999999999
Q ss_pred ccCCC
Q psy14139 285 GRAQA 289 (327)
Q Consensus 285 ak~~~ 289 (327)
+.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98654
No 141
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=1e-15 Score=122.89 Aligned_cols=81 Identities=22% Similarity=0.474 Sum_probs=73.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEE--------EEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEEC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRS--------VTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILG 276 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~--------v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~ 276 (327)
...++|||+|||.++++++|+++|++||.|.+ +.+..+ ++||||+|.+.++|++|++. +++..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~-l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW-FDGKEFS 83 (116)
Confidence 45689999999999999999999999999998 777754 68999999999999999997 7999999
Q ss_pred CeeEEEEeccCCCCCC
Q psy14139 277 GRRLNIKWGRAQANRG 292 (327)
Q Consensus 277 G~~L~V~~ak~~~~~~ 292 (327)
|+.|+|.|++++....
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999999877654
No 142
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=6.1e-14 Score=109.53 Aligned_cols=78 Identities=14% Similarity=0.284 Sum_probs=68.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTIL------SKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~------~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
...++|||+|||.++++++|+++|++||.|.+ .++ ..+|||||+|.+.++|++|++ +++..+.|+.|+|.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~--l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE--LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH--GGGCCBTTBCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh--cCCcEECCcEEEEEE
Confidence 34689999999999999999999999998766 332 348999999999999999997 599999999999999
Q ss_pred ccCCCCC
Q psy14139 285 GRAQANR 291 (327)
Q Consensus 285 ak~~~~~ 291 (327)
++++..+
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9987654
No 143
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.51 E-value=6.7e-14 Score=123.84 Aligned_cols=77 Identities=19% Similarity=0.357 Sum_probs=71.5
Q ss_pred CccEEEEcCCC-CCCCHHHHHHHHhhcCCeEEEEEecC-CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCC
Q psy14139 212 TITTLYVGNLG-DKLTEQDLRDHFYQFGEIRSVTILSK-QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 212 ~~~tLfVgnLp-~~ite~~Lr~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~ 289 (327)
..++|||+||| ..+++++|+++|++||.|.+|+++.+ +|+|||+|.+.++|+.|++. +||..+.|+.|+|.|++.+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~-lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITH-LNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHH-HTTCEETTEECEEEECSCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHH-hCCCEECCceEEEEEccCCc
Confidence 34799999999 89999999999999999999999875 79999999999999999998 69999999999999998554
No 144
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.51 E-value=1.1e-14 Score=107.36 Aligned_cols=69 Identities=23% Similarity=0.418 Sum_probs=64.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 215 tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
+|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|++ .++..++|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~--~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT--TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH--hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999998753 7899999999999999998 3889999999999885
No 145
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=8.3e-14 Score=117.31 Aligned_cols=91 Identities=24% Similarity=0.396 Sum_probs=77.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
.++|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|++. ++|..+.|+.|+|.|++
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~-l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV-LNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH-HTTCEETTEECEEEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHh-cCCCEeCCcEEEEEecC
Confidence 479999999999999999999999999999998764 48999999999999999997 69999999999999998
Q ss_pred CCCCCCCCcccccccccCCCCCCC
Q psy14139 287 AQANRGEDTAELKVRLEPVPGLPG 310 (327)
Q Consensus 287 ~~~~~~~~~~~~~~~~~pv~Glp~ 310 (327)
+...... ....+ |.|||.
T Consensus 82 ~~~~~~~----~~~l~--v~nl~~ 99 (168)
T 1b7f_A 82 PGGESIK----DTNLY--VTNLPR 99 (168)
T ss_dssp CCSSTTT----TCEEE--EESCCT
T ss_pred CCcccCC----CCCEE--EeCCCC
Confidence 7664322 22233 667753
No 146
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.9e-14 Score=110.24 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=69.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEE-EEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRS-VTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~-v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
.....+|||+|||.+++|++|+++|++||.|.+ |+|+.+ +|||||+|.+.++|++|++. ++..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~--~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK--HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT--TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh--CcchhCCcEEEEE
Confidence 345689999999999999999999999999987 777643 79999999999999999983 8999999999999
Q ss_pred eccCCC
Q psy14139 284 WGRAQA 289 (327)
Q Consensus 284 ~ak~~~ 289 (327)
++.++.
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 147
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.50 E-value=8.1e-14 Score=116.84 Aligned_cols=92 Identities=26% Similarity=0.396 Sum_probs=77.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
++|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|++. ++|..+.|+.|+|.|+.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT-LNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHH-HTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHH-cCCCccCCCeeEEEEcCCC
Confidence 58999999999999999999999999999999864 48999999999999999987 6999999999999999877
Q ss_pred CCCCCCcccccccccCCCCCCC
Q psy14139 289 ANRGEDTAELKVRLEPVPGLPG 310 (327)
Q Consensus 289 ~~~~~~~~~~~~~~~pv~Glp~ 310 (327)
...... .....+ |.|||.
T Consensus 80 ~~~~~~--~~~~l~--v~nl~~ 97 (166)
T 3md3_A 80 QQSSSD--DTFNLF--VGDLNV 97 (166)
T ss_dssp CCCCCT--TCEEEE--EESCCT
T ss_pred CCCCCC--CCceEE--ECCCCC
Confidence 654322 222334 677753
No 148
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.50 E-value=7.8e-14 Score=120.59 Aligned_cols=98 Identities=21% Similarity=0.417 Sum_probs=76.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
+....++|||+|||.++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA--RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT--CSCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc--CCCEECCEEeee
Confidence 4456789999999999999999999999999999999864 57999999999999999983 889999999999
Q ss_pred EeccCCCCCCCCc--ccccccccCCCCCCC
Q psy14139 283 KWGRAQANRGEDT--AELKVRLEPVPGLPG 310 (327)
Q Consensus 283 ~~ak~~~~~~~~~--~~~~~~~~pv~Glp~ 310 (327)
.|+.+......+. .....++ |.|||.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~--V~nLp~ 114 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIF--VGGIKE 114 (196)
T ss_dssp EECCC-----------CCSEEE--EECCTT
T ss_pred ecccCcccccccccCCCcceEE--EeCCCC
Confidence 9998765433221 1223344 677753
No 149
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.50 E-value=1.6e-14 Score=113.11 Aligned_cols=79 Identities=19% Similarity=0.461 Sum_probs=70.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
+...++|||+|||.++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++ ++..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~---~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE---SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT---CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh---CCCeECCEEEEEEE
Confidence 345689999999999999999999999999999999874 6999999999999999986 88999999999999
Q ss_pred ccCCCCC
Q psy14139 285 GRAQANR 291 (327)
Q Consensus 285 ak~~~~~ 291 (327)
+.++...
T Consensus 83 a~~~~~~ 89 (102)
T 2xs2_A 83 AIRKQNL 89 (102)
T ss_dssp EEECC--
T ss_pred CCcCcch
Confidence 9876543
No 150
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.49 E-value=4.9e-14 Score=124.79 Aligned_cols=94 Identities=22% Similarity=0.421 Sum_probs=77.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+|||.+++|++|+++|++||+|.+|+|+.+ +|||||+|.+.++|++|++. +++..+.|+.|+|.|+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~-~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT-MNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-HTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH-hhhhhcCCcccccccc
Confidence 4579999999999999999999999999999999864 58999999999999999997 6999999999999998
Q ss_pred cCCCCCCCCcccccccccCCCCCCC
Q psy14139 286 RAQANRGEDTAELKVRLEPVPGLPG 310 (327)
Q Consensus 286 k~~~~~~~~~~~~~~~~~pv~Glp~ 310 (327)
....... ......++ |.+||.
T Consensus 93 ~~~~~~~--~~~~~~l~--v~nl~~ 113 (213)
T 4f02_A 93 QRDPSLR--KSGVGNIF--IKNLDK 113 (213)
T ss_dssp CCCTHHH--HHCTTEEE--EESCCT
T ss_pred ccccccc--ccccccce--ECCccc
Confidence 7654321 11223345 677753
No 151
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=5.4e-14 Score=113.59 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=70.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCC---eEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGE---IRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRL 280 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~---I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L 280 (327)
.....++|||+|||.++++++|+++|++||. |.+|+|+.+ +|||||+|.+.++|++|++ +++..|+|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~--~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK--KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG--GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh--cCCCeECCeEE
Confidence 3455689999999999999999999999999 899998864 6899999999999999998 59999999999
Q ss_pred EEEeccCC
Q psy14139 281 NIKWGRAQ 288 (327)
Q Consensus 281 ~V~~ak~~ 288 (327)
+|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998654
No 152
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=4.2e-13 Score=123.12 Aligned_cols=81 Identities=22% Similarity=0.483 Sum_probs=73.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHH----HHHhhcCCeEEEEEec---CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLR----DHFYQFGEIRSVTILS---KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRL 280 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr----~~F~~fG~I~~v~i~~---~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L 280 (327)
++....++|||+|||.++++++|+ ++|++||.|.+|++.. .+|||||+|.+.++|++|++. ++|..+.|+.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l 82 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS-MQGFPFYDKPM 82 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHH-hcCCeeCCcEE
Confidence 455667899999999999999977 8999999999999876 479999999999999999987 79999999999
Q ss_pred EEEeccCCC
Q psy14139 281 NIKWGRAQA 289 (327)
Q Consensus 281 ~V~~ak~~~ 289 (327)
+|.|++...
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999998765
No 153
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=106.05 Aligned_cols=75 Identities=23% Similarity=0.275 Sum_probs=66.5
Q ss_pred CccEEEEcCCCCCCCHHH----HHHHHhhc-CCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 212 TITTLYVGNLGDKLTEQD----LRDHFYQF-GEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~----Lr~~F~~f-G~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
..+.|||+|||..+++++ |+++|++| |+|.+|. .|+|||.|.+.++|++|++. ++|..+.|++|+|.+++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~-l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKR-MENEDVFGNRIIVSFTP 82 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHH-HTTCCSSSSCCEEESSC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHH-hcCCccCCceEEEEecC
Confidence 335599999999999988 55899999 5999983 49999999999999999998 69999999999999999
Q ss_pred CCCCC
Q psy14139 287 AQANR 291 (327)
Q Consensus 287 ~~~~~ 291 (327)
.++.-
T Consensus 83 ~~sd~ 87 (96)
T 2diu_A 83 KNREL 87 (96)
T ss_dssp CSCCC
T ss_pred CCcce
Confidence 87653
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.47 E-value=1.1e-13 Score=122.45 Aligned_cols=77 Identities=23% Similarity=0.514 Sum_probs=71.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
..+|||+|||.++++++|+++|++||.|.+++|+.+ +|||||+|.+.++|++|++. +||..|+|+.|+|.|++++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~-lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK-MNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHH-HTTCEETTEECEEEECCCH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHH-hCCCEECCEEEEEEEcCCC
Confidence 468999999999999999999999999999999864 68999999999999999998 6999999999999999876
Q ss_pred CC
Q psy14139 289 AN 290 (327)
Q Consensus 289 ~~ 290 (327)
..
T Consensus 182 ~~ 183 (213)
T 4f02_A 182 KE 183 (213)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 155
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.4e-13 Score=113.93 Aligned_cols=77 Identities=26% Similarity=0.493 Sum_probs=70.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
....++|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|+.. ++|..++|+.|+|.
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS-MQGQDLNGRPLRIN 162 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH-HTTCEETTEECEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH-hCCCccCCcEEEEE
Confidence 345679999999999999999999999999999999864 67999999999999999997 69999999999999
Q ss_pred eccC
Q psy14139 284 WGRA 287 (327)
Q Consensus 284 ~ak~ 287 (327)
|++.
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9863
No 156
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2e-13 Score=109.06 Aligned_cols=78 Identities=17% Similarity=0.257 Sum_probs=69.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
|......+|||+|||.+++|++|+++|++| .|.+|+|+.+ +|+|||+|.+.++|++|+. +++..++|+.|.|
T Consensus 11 ~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~--~~~~~~~gr~i~V 87 (109)
T 2dnn_A 11 PINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK--RNRMLMIQRYVEV 87 (109)
T ss_dssp CCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH--TTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh--cCCCeECCeEEEE
Confidence 334456799999999999999999999999 8999999863 7999999999999999994 6999999999999
Q ss_pred EeccCC
Q psy14139 283 KWGRAQ 288 (327)
Q Consensus 283 ~~ak~~ 288 (327)
..+.++
T Consensus 88 ~~a~~~ 93 (109)
T 2dnn_A 88 SPATER 93 (109)
T ss_dssp EECCHH
T ss_pred EECCcc
Confidence 888654
No 157
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.47 E-value=5.1e-14 Score=116.95 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=71.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhhcCC---eEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCee
Q psy14139 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGE---IRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRR 279 (327)
Q Consensus 208 p~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~---I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~ 279 (327)
+.....++|||+|||.+++|++|+++|++||. |.+|+|+.+ +|||||+|.+.++|++|++ +++..++|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~--~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK--KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT--TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh--cCCCEECCEE
Confidence 34556789999999999999999999999999 889998864 6899999999999999998 5999999999
Q ss_pred EEEEeccCC
Q psy14139 280 LNIKWGRAQ 288 (327)
Q Consensus 280 L~V~~ak~~ 288 (327)
|+|.++.++
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999998654
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.47 E-value=2e-13 Score=118.15 Aligned_cols=80 Identities=19% Similarity=0.470 Sum_probs=74.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
...++|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|++. ++|..++|+.|+|.|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG-LNGMQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHH-HTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 45689999999999999999999999999999999875 68999999999999999997 699999999999999
Q ss_pred ccCCCCC
Q psy14139 285 GRAQANR 291 (327)
Q Consensus 285 ak~~~~~ 291 (327)
++++.++
T Consensus 191 a~~~~~~ 197 (198)
T 2yh0_A 191 ASVGAKN 197 (198)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9987654
No 159
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=9.2e-14 Score=109.45 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
...++|||+|||.+++|++|+++|++||. .+|+|+.+ +|||||+|.+.++|++|++ +++..++|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~--~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA--KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT--TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH--hCCCeECCcEEEEEEC
Confidence 34579999999999999999999999995 48988764 6899999999999999995 4999999999999998
Q ss_pred cCCCCC
Q psy14139 286 RAQANR 291 (327)
Q Consensus 286 k~~~~~ 291 (327)
.+....
T Consensus 90 ~~~~~~ 95 (102)
T 1wez_A 90 STAGTS 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 160
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.46 E-value=6.2e-14 Score=126.27 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=68.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcC--CeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFG--EIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG--~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
..++|||+||+.+++|++|+++|++|| .|.+|+|+.+ ++||||+|.+.++|++|++. +++..|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~-lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL-LPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTT-STTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH-cCCCeECCEEeEEE
Confidence 457999999999999999999999999 9999999875 58999999999999999997 79999999999999
Q ss_pred eccC
Q psy14139 284 WGRA 287 (327)
Q Consensus 284 ~ak~ 287 (327)
|+++
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 9864
No 161
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.46 E-value=1.7e-13 Score=118.68 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
...++|||+|||.++++++|+++|++||.|.+|.|..+ +++|||+|.+.++|++|++. +++..++|+.|+|.|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~-lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ-YKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHH-STTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHH-hCCCEECCEEEEEEEe
Confidence 44689999999999999999999999999999999763 69999999999999999997 7999999999999998
Q ss_pred cCCC
Q psy14139 286 RAQA 289 (327)
Q Consensus 286 k~~~ 289 (327)
.+..
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 7653
No 162
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.46 E-value=3.1e-13 Score=123.33 Aligned_cols=76 Identities=33% Similarity=0.503 Sum_probs=72.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
...++|||+|||.++++++|+++|++||.|.+|.+..++|+|||+|.+.++|+.|+.. ++|..+.|+.|+|.|+.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~-l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAE-LDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHH-HTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHH-cCCcEECCceeEeeeccc
Confidence 4557999999999999999999999999999999999999999999999999999997 699999999999999875
No 163
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.46 E-value=3.7e-13 Score=113.88 Aligned_cols=91 Identities=26% Similarity=0.439 Sum_probs=77.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhc----C-------CeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeE
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQF----G-------EIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRL 280 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~f----G-------~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L 280 (327)
..++|||+|||.++++++|+++|++| | .|.++.+..++|+|||+|.+.++|++|+ . ++|..+.|+.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~-~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-A-FDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-G-GTTCEETTEEC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-H-hCCcEecCcee
Confidence 45899999999999999999999999 7 8999999999999999999999999999 5 79999999999
Q ss_pred EEEeccCCCCCCCCcccccccccCCCCCCC
Q psy14139 281 NIKWGRAQANRGEDTAELKVRLEPVPGLPG 310 (327)
Q Consensus 281 ~V~~ak~~~~~~~~~~~~~~~~~pv~Glp~ 310 (327)
+|.|+.+...... ....+ |.|||.
T Consensus 81 ~v~~~~~~~~~~~----~~~l~--v~nlp~ 104 (172)
T 2g4b_A 81 KIRRPHDYQPLPG----AHKLF--IGGLPN 104 (172)
T ss_dssp EEECCSSCCCCTT----TTCEE--EECCCT
T ss_pred eecCCcccCCCCC----CCEEE--EEcCCC
Confidence 9999876543321 22344 677753
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=3.3e-13 Score=118.41 Aligned_cols=77 Identities=26% Similarity=0.509 Sum_probs=71.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+|||.++++++|+++|++||.|.++++..+ +++|||+|.+.++|++|++. ++|..++|+.|+|.|+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS-MNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-HTTCBCSSSBCEEEEC
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH-ccCCEeCCcEEEEEEe
Confidence 4479999999999999999999999999999999875 68999999999999999998 6999999999999999
Q ss_pred cCCC
Q psy14139 286 RAQA 289 (327)
Q Consensus 286 k~~~ 289 (327)
+++.
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8764
No 165
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.43 E-value=4.8e-13 Score=115.56 Aligned_cols=81 Identities=20% Similarity=0.443 Sum_probs=68.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
...++|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|+.. ++..++|+.|.|.|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~--~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ--KYHTVNGHNCEVRK 179 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC--SCCEETTEECEEEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh--CCcEECCEEEEEEe
Confidence 34589999999999999999999999999999999864 68999999999999999984 79999999999999
Q ss_pred ccCCCCCCC
Q psy14139 285 GRAQANRGE 293 (327)
Q Consensus 285 ak~~~~~~~ 293 (327)
+.++.....
T Consensus 180 a~~k~~~~~ 188 (196)
T 1l3k_A 180 ALSKQEMAS 188 (196)
T ss_dssp CC-------
T ss_pred cCChhHhcc
Confidence 998876543
No 166
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.43 E-value=4.8e-13 Score=131.36 Aligned_cols=79 Identities=25% Similarity=0.453 Sum_probs=72.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
...++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|+.. |||..|.|+.|.|.|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~-lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH-ADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34579999999999999999999999999999999864 79999999999999999997 799999999999999
Q ss_pred ccCCCC
Q psy14139 285 GRAQAN 290 (327)
Q Consensus 285 ak~~~~ 290 (327)
+++...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987654
No 167
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.43 E-value=9.8e-14 Score=109.91 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=69.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCC---eEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGE---IRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~---I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
.....+|||+|||.++++++|+++|+.||. |.+|+|+.+ +|+|||+|.+.++|++|++ +++..++|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~--~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE--KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT--TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH--hCcceeCCeEEE
Confidence 345689999999999999999999999988 899998763 6899999999999999998 599999999999
Q ss_pred EEeccCCC
Q psy14139 282 IKWGRAQA 289 (327)
Q Consensus 282 V~~ak~~~ 289 (327)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99987643
No 168
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.43 E-value=6.9e-13 Score=121.69 Aligned_cols=76 Identities=20% Similarity=0.357 Sum_probs=71.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-CeEEEEeCCHHHHHHHHHHhcCCeEEC-CeeEEEEecc
Q psy14139 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQ-QCAFIQYTSRPAAEAAVEHSFNKVILG-GRRLNIKWGR 286 (327)
Q Consensus 210 d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~k-g~aFV~F~~~~~Ae~A~~~~l~g~~i~-G~~L~V~~ak 286 (327)
....++|||+|||.++++++|+++|++||.|.++++..++ |+|||+|.+.++|++|++. ++|..+. |+.|+|.|++
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDA-LQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHH-cCCcEeCCCCEEEEEEec
Confidence 4556899999999999999999999999999999999876 9999999999999999997 7999999 9999999986
No 169
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.4e-14 Score=114.82 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=67.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
...++|||+|||.++++++|+++|++||.|.++.++. .+|||||+|.+.++|++|++ +++..|+|+.|+|.|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~--~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC--RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT--SCSBCSTTSCBEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH--hCCCeECCcEEEEEE
Confidence 3458999999999999999999999999998743332 26899999999999999998 599999999999999
Q ss_pred ccCCC
Q psy14139 285 GRAQA 289 (327)
Q Consensus 285 ak~~~ 289 (327)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87654
No 170
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.41 E-value=4.5e-13 Score=116.46 Aligned_cols=76 Identities=29% Similarity=0.417 Sum_probs=71.3
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEEecC-CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCC
Q psy14139 213 ITTLYVGNLGD-KLTEQDLRDHFYQFGEIRSVTILSK-QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQA 289 (327)
Q Consensus 213 ~~tLfVgnLp~-~ite~~Lr~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~ 289 (327)
.++|||+|||. ++++++|+++|++||.|.++++..+ +|+|||+|.+.++|++|++. ++|..+.|+.|+|.|+++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~-l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSH-LNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHH-HTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHH-hCCCeecCeEEEEEEecCCC
Confidence 47999999999 9999999999999999999999887 59999999999999999997 69999999999999998764
No 171
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.41 E-value=4.8e-13 Score=119.71 Aligned_cols=78 Identities=28% Similarity=0.400 Sum_probs=72.7
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEEecC-CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 211 KTITTLYVGNLGD-KLTEQDLRDHFYQFGEIRSVTILSK-QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 211 ~~~~tLfVgnLp~-~ite~~Lr~~F~~fG~I~~v~i~~~-kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
...++|||+|||. ++++++|+++|++||.|.+|++..+ +++|||+|.+.++|++|++. ++|..+.|+.|+|.|+++.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~-l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSH-LNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHH-HTTCBCSSSBCEEECCSCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHH-hCCCeECCeEEEEEEecCc
Confidence 4568999999999 9999999999999999999999987 59999999999999999997 6999999999999999866
Q ss_pred C
Q psy14139 289 A 289 (327)
Q Consensus 289 ~ 289 (327)
.
T Consensus 111 ~ 111 (229)
T 2adc_A 111 N 111 (229)
T ss_dssp C
T ss_pred c
Confidence 3
No 172
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.41 E-value=4.9e-13 Score=113.15 Aligned_cols=73 Identities=19% Similarity=0.489 Sum_probs=68.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|++. ++|..++|+.|+|.||
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG-LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH-HTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH-cCCCEECCeEEEEEeC
Confidence 3589999999999999999999999999999999876 58999999999999999997 6999999999999997
No 173
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.40 E-value=3.8e-13 Score=113.26 Aligned_cols=74 Identities=19% Similarity=0.451 Sum_probs=69.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
.++|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|++ +++..++|+.|+|.|++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ--NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH--CSEECSSSSCEEEEECC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh--CCCEEeCCeEEEEeecC
Confidence 469999999999999999999999999999999864 5899999999999999997 59999999999999998
Q ss_pred CC
Q psy14139 287 AQ 288 (327)
Q Consensus 287 ~~ 288 (327)
|+
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.40 E-value=7.9e-13 Score=111.85 Aligned_cols=93 Identities=20% Similarity=0.409 Sum_probs=75.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec--------CCCeEEEEeCCHHHHHHHHHHhcCCeEEC---CeeE
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS--------KQQCAFIQYTSRPAAEAAVEHSFNKVILG---GRRL 280 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~--------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~---G~~L 280 (327)
+.++|||+|||.++++++|+++|++||.|.+++++. .+|+|||+|.+.++|++|++. +++..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNA-LHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHH-HTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHH-hcCcEEccCCccce
Confidence 347999999999999999999999999999999984 368999999999999999997 5876655 5788
Q ss_pred EEEeccCCCCCCCCcccccccccCCCCCCC
Q psy14139 281 NIKWGRAQANRGEDTAELKVRLEPVPGLPG 310 (327)
Q Consensus 281 ~V~~ak~~~~~~~~~~~~~~~~~pv~Glp~ 310 (327)
.+.++.+..... ......+ |.|||.
T Consensus 81 ~~~~~~~~~~~~---~~~~~l~--v~nl~~ 105 (175)
T 3nmr_A 81 QMKPADSEKNNA---VEDRKLF--IGMISK 105 (175)
T ss_dssp EEEECGGGCCSC---GGGSEEE--EESCCT
T ss_pred EEcccccccccc---CCCCeEE--EcCCCC
Confidence 998887765432 1223344 677763
No 175
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=1.3e-12 Score=116.91 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=71.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEEec-CCCeEEEEeCCHHHHHHHHHHhcCCeEEC-CeeEEEEeccCC
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFG-EIRSVTILS-KQQCAFIQYTSRPAAEAAVEHSFNKVILG-GRRLNIKWGRAQ 288 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG-~I~~v~i~~-~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~-G~~L~V~~ak~~ 288 (327)
..++|||+|||.++++++|+++|++|| .|.+++++. ++++|||+|.+.++|++|++. ++|..++ |+.|+|.|++++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~-l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALID-LHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHH-HTTCBSSSSCBCEEEECSSC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHH-HCCCccCCCCeEEEEEecCC
Confidence 458999999999999999999999999 999999965 799999999999999999998 6999999 999999999875
No 176
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.38 E-value=1.5e-12 Score=110.74 Aligned_cols=77 Identities=26% Similarity=0.381 Sum_probs=69.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEe--cCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTIL--SKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~--~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
...++|||+|||.++++++|+++|++||.|..+ .. ..+|+|||+|.+.++|++|++. ++|..++|+.|+|.|++++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEE-KQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHH-HTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHH-hCCCEECCeEEEEEecCCC
Confidence 456899999999999999999999999999877 11 2479999999999999999997 6999999999999999876
Q ss_pred C
Q psy14139 289 A 289 (327)
Q Consensus 289 ~ 289 (327)
+
T Consensus 175 ~ 175 (175)
T 1fje_B 175 G 175 (175)
T ss_dssp C
T ss_pred C
Confidence 3
No 177
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.38 E-value=4.2e-12 Score=109.80 Aligned_cols=76 Identities=28% Similarity=0.462 Sum_probs=70.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhc----C-------CeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQF----G-------EIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~f----G-------~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
.++|||+|||.++++++|+++|++| | .|.++.+..++|||||+|.+.++|++|+ . ++|..+.|+.|+
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~-l~g~~~~g~~i~ 81 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-A-FDGIIFQGQSLK 81 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-G-GTTEEETTEEEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-H-hcCCEEcCceEE
Confidence 4799999999999999999999999 6 7899999999999999999999999999 5 799999999999
Q ss_pred EEeccCCCC
Q psy14139 282 IKWGRAQAN 290 (327)
Q Consensus 282 V~~ak~~~~ 290 (327)
|.|+++...
T Consensus 82 v~~~~~~~~ 90 (198)
T 2yh0_A 82 IRRPHDYQP 90 (198)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999887644
No 178
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.38 E-value=8e-13 Score=114.87 Aligned_cols=77 Identities=22% Similarity=0.352 Sum_probs=71.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEEec-CCCeEEEEeCCHHHHHHHHHHhcCCeEEC-CeeEEEEeccC
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFG-EIRSVTILS-KQQCAFIQYTSRPAAEAAVEHSFNKVILG-GRRLNIKWGRA 287 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG-~I~~v~i~~-~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~-G~~L~V~~ak~ 287 (327)
...++|||+|||..+++++|+++|++|| .|.++++.. ++|+|||+|.+.++|++|+.. ++|..++ |+.|+|.|+++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALID-LHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHH-HTSSCCSSCCSCCEEEECC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHH-hcCCccCCCCeEEEEeecc
Confidence 3468999999999999999999999999 999999966 689999999999999999997 6999999 99999999987
Q ss_pred C
Q psy14139 288 Q 288 (327)
Q Consensus 288 ~ 288 (327)
+
T Consensus 197 ~ 197 (198)
T 1qm9_A 197 T 197 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.38 E-value=1.3e-12 Score=110.47 Aligned_cols=74 Identities=28% Similarity=0.544 Sum_probs=66.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEEC---CeeEEEE
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILG---GRRLNIK 283 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~---G~~L~V~ 283 (327)
..++|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|++. ++|..+. |++|+|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA-MHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH-HTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH-hcCCcccCCCCCCeEEE
Confidence 4579999999999999999999999999999999875 78999999999999999998 6876555 3999999
Q ss_pred ecc
Q psy14139 284 WGR 286 (327)
Q Consensus 284 ~ak 286 (327)
||.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 180
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.37 E-value=2.2e-13 Score=113.46 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=68.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
...++|||+|||.+++|++|+++|++|| |.+|+|+.+ +|||||+|.+.++|++|+ . +++..++|+.|+|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~-~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-S-KDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-T-CCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-h-hCCCEECCEEEEEEEC
Confidence 3457999999999999999999999999 779998763 789999999999999999 4 6999999999999998
Q ss_pred cCCCCC
Q psy14139 286 RAQANR 291 (327)
Q Consensus 286 k~~~~~ 291 (327)
.+....
T Consensus 121 ~~~~~~ 126 (139)
T 2hgn_A 121 STTGAS 126 (139)
T ss_dssp CCSCC-
T ss_pred CCCCCC
Confidence 876543
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.37 E-value=2.7e-12 Score=109.06 Aligned_cols=96 Identities=16% Similarity=0.249 Sum_probs=76.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEE-----EEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRS-----VTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~-----v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
.....++|||+|||.++++++|+++|++||.+.. ......+|+|||+|.+.++|++|++ ++|..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE--LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH--GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh--cCCCEeCCeEEEEe
Confidence 3456689999999999999999999999985443 3444468999999999999999994 79999999999999
Q ss_pred eccCCCCCCCCcccccccccCCCCCCC
Q psy14139 284 WGRAQANRGEDTAELKVRLEPVPGLPG 310 (327)
Q Consensus 284 ~ak~~~~~~~~~~~~~~~~~pv~Glp~ 310 (327)
|+.++...... .....+ |.|||.
T Consensus 87 ~~~~~~~~~~~--~~~~l~--v~nlp~ 109 (175)
T 1fje_B 87 KPKGRDSKKVR--AARTLL--AKNLSF 109 (175)
T ss_dssp CCCCSSCSTTG--GGGEEE--EESCCS
T ss_pred cCCCccccccc--cCCEEE--EeCCCC
Confidence 99887654322 233344 777763
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.37 E-value=1.8e-12 Score=113.69 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=67.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS-----KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~-----~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
..++|||+|||.++++++|+++|++||.|.+|+|.. .+|||||+|.+.++|++|++. .+..++|+.|+|.|++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~--~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET--PGQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHC--TTCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHh--CCCeECCEEEEEEEhH
Confidence 357999999999999999999999999999999986 369999999999999999984 3459999999999987
Q ss_pred CC
Q psy14139 287 AQ 288 (327)
Q Consensus 287 ~~ 288 (327)
.-
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 64
No 183
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.37 E-value=2.2e-12 Score=108.52 Aligned_cols=74 Identities=32% Similarity=0.537 Sum_probs=68.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECC--eeEEE
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGG--RRLNI 282 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G--~~L~V 282 (327)
...++|||+|||.++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|++. ++|..+.| ++|+|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA-LNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-HTTCCCTTCSSCCEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH-hcCCEecCCCeEEEE
Confidence 34579999999999999999999999999999999875 38999999999999999997 69999988 99999
Q ss_pred Eec
Q psy14139 283 KWG 285 (327)
Q Consensus 283 ~~a 285 (327)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 184
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.36 E-value=6.6e-13 Score=108.81 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=66.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeE--EEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIR--SVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~--~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
....+|||+|||.+++|++|+++|++| .|. +|+|+.+ +|||||+|.+.++|++|++. ++..|+|+.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~--~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK--HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT--TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH--CCCEECCEEEEEE
Confidence 345789999999999999999999999 677 8888763 79999999999999999983 6799999999998
Q ss_pred eccCC
Q psy14139 284 WGRAQ 288 (327)
Q Consensus 284 ~ak~~ 288 (327)
++.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 87543
No 185
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.36 E-value=1.8e-12 Score=113.62 Aligned_cols=77 Identities=31% Similarity=0.567 Sum_probs=69.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+|||.++++++|+++|++||.|.+++++.+ +++|||+|.+.++|++|++. +++..+.|+.|+|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ-MNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHH-HSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHH-ccCCeeCCeeEEEecC
Confidence 3579999999999999999999999999999999753 79999999999999999997 6999999999999988
Q ss_pred cCCC
Q psy14139 286 RAQA 289 (327)
Q Consensus 286 k~~~ 289 (327)
....
T Consensus 106 ~~~~ 109 (216)
T 2qfj_A 106 SNIG 109 (216)
T ss_dssp SCCG
T ss_pred CCcc
Confidence 7654
No 186
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.2e-12 Score=103.27 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=62.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec---------CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEE
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS---------KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLN 281 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~---------~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~ 281 (327)
...++|||+|||.++++++|+++|++||.|. +.++. .+|||||+|.+.++|++|++. + ..++|+.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~-~--~~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA-C--LEEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH-S--EEETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh-h--hhcCCcEEE
Confidence 3458999999999999999999999999999 76654 379999999999999999997 4 347888888
Q ss_pred EEeccCC
Q psy14139 282 IKWGRAQ 288 (327)
Q Consensus 282 V~~ak~~ 288 (327)
+..+.+.
T Consensus 82 ~~~~~~~ 88 (114)
T 2dnl_A 82 CVSSPTI 88 (114)
T ss_dssp EECCSSS
T ss_pred eccCCCc
Confidence 8755433
No 187
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=6.3e-13 Score=108.44 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=66.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCe----EEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEI----RSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I----~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
...+|||+|||.+++|++|+++|++||.| .+|+|+.+ +|||||+|.+.++|++|++. ++..++|+.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~--~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK--HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT--TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh--CCCeeCCeEEEE
Confidence 34799999999999999999999999985 68888753 68999999999999999983 899999999999
Q ss_pred EeccCC
Q psy14139 283 KWGRAQ 288 (327)
Q Consensus 283 ~~ak~~ 288 (327)
..+.++
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887543
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.33 E-value=2.9e-12 Score=107.81 Aligned_cols=75 Identities=20% Similarity=0.462 Sum_probs=67.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
..++|||+|||.++++++|+++|++||.|.+++++.+ +|+|||+|.+.++|++|++ ++..++|+.|.|.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~---~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK---TQHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH---SCCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh---cccccCCeEcccccc
Confidence 4589999999999999999999999999999999864 5899999999999999998 357899999999998
Q ss_pred cCCC
Q psy14139 286 RAQA 289 (327)
Q Consensus 286 k~~~ 289 (327)
.++.
T Consensus 79 ~~~~ 82 (167)
T 2cjk_A 79 IPRD 82 (167)
T ss_dssp CCHH
T ss_pred cchh
Confidence 7654
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.1e-11 Score=98.91 Aligned_cols=79 Identities=16% Similarity=0.349 Sum_probs=67.9
Q ss_pred CCccEEEEcCCCCCCC-----------HHHHHHHHhhcCCeEEEEEec--CCCeEEEEeCCHHHHHHHHHHhcCCeEECC
Q psy14139 211 KTITTLYVGNLGDKLT-----------EQDLRDHFYQFGEIRSVTILS--KQQCAFIQYTSRPAAEAAVEHSFNKVILGG 277 (327)
Q Consensus 211 ~~~~tLfVgnLp~~it-----------e~~Lr~~F~~fG~I~~v~i~~--~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G 277 (327)
...++|+|.||..... +++|+++|++||.|.++.|.. .+|||||+|.+.++|++|+.. ++|..++|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~-lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQT-LDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHH-STTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHH-cCCCEECC
Confidence 3457999999954322 589999999999999997753 379999999999999999997 79999999
Q ss_pred eeEEEEeccCCCC
Q psy14139 278 RRLNIKWGRAQAN 290 (327)
Q Consensus 278 ~~L~V~~ak~~~~ 290 (327)
+.|+|.|+.++..
T Consensus 92 r~l~v~~a~~~~~ 104 (112)
T 2dit_A 92 RQITAQAWDGTTD 104 (112)
T ss_dssp EECEEEECCSCCC
T ss_pred cEEEEEEeCCCCC
Confidence 9999999988654
No 190
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.33 E-value=3.6e-12 Score=106.78 Aligned_cols=73 Identities=29% Similarity=0.504 Sum_probs=66.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCCHHHHHHHHHHhcCCeEECCe--eEEEE
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAAVEHSFNKVILGGR--RLNIK 283 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~--~L~V~ 283 (327)
..++|||+|||.++++++|+++|++||.|.++++..+ +|+|||+|.+.++|++|++. ++|..+.|+ +|+|.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG-LNGQKPSGATEPITVK 165 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-HTTCCCTTCSSCCEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH-hcCCccCCCccceEEE
Confidence 4579999999999999999999999999999999864 58999999999999999998 699999996 58998
Q ss_pred ec
Q psy14139 284 WG 285 (327)
Q Consensus 284 ~a 285 (327)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.33 E-value=3.3e-12 Score=117.29 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=74.1
Q ss_pred CCCccEEEEcCCCCCC-CHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 210 DKTITTLYVGNLGDKL-TEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 210 d~~~~tLfVgnLp~~i-te~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
....++|||+|||.++ ++++|+++|++||.|.++.+..+ +|+|||+|.+.++|++|+.. ++|..++|+.|+|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQ-ADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHH-HTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHH-hCCCccCCeEEEEE
Confidence 3456899999999996 99999999999999999999875 79999999999999999998 69999999999999
Q ss_pred eccCCCCC
Q psy14139 284 WGRAQANR 291 (327)
Q Consensus 284 ~ak~~~~~ 291 (327)
|++++..+
T Consensus 260 ~a~~~~~~ 267 (284)
T 3smz_A 260 FCAPGPPG 267 (284)
T ss_dssp ECCSSSCH
T ss_pred EecCCCcc
Confidence 99987653
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.31 E-value=8.9e-12 Score=98.73 Aligned_cols=75 Identities=16% Similarity=0.269 Sum_probs=65.8
Q ss_pred ccEEEEcCCCC-----CCCHHHHHHHHhhcCCeEEEEEecC-------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeE
Q psy14139 213 ITTLYVGNLGD-----KLTEQDLRDHFYQFGEIRSVTILSK-------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRL 280 (327)
Q Consensus 213 ~~tLfVgnLp~-----~ite~~Lr~~F~~fG~I~~v~i~~~-------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L 280 (327)
.++|+|.|+.. +-.+++|++.|++||.|.++.|..+ +|+|||+|.+.++|++|+++ +||..++|+.|
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~-lnG~~~~Gr~i 86 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVD-LNGRYFGGRVV 86 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHH-HTTCEETTEEC
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHH-HCCCEECCcEE
Confidence 47999999963 2368999999999999999999752 68999999999999999998 69999999999
Q ss_pred EEEeccCC
Q psy14139 281 NIKWGRAQ 288 (327)
Q Consensus 281 ~V~~ak~~ 288 (327)
+|.|+.+.
T Consensus 87 ~v~~a~~~ 94 (105)
T 2pe8_A 87 KACFYNLD 94 (105)
T ss_dssp EEEECCHH
T ss_pred EEEEcCHH
Confidence 99998753
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.31 E-value=4.8e-12 Score=116.60 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=67.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEec----CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS----KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 209 ~d~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~----~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
.+...++|||+|||.++++++|+++|++||.|.+|+|.. .+|+|||+|.+.++|++|++ +++..++|+.|.|.|
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~--~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT--KTHKVVGQNEIIVSH 114 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT--TTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH--hCCcEeCCcEEEEEE
Confidence 345678999999999999999999999999999999987 47999999999999999995 699999999999998
Q ss_pred cc
Q psy14139 285 GR 286 (327)
Q Consensus 285 ak 286 (327)
+.
T Consensus 115 ~~ 116 (292)
T 2ghp_A 115 LT 116 (292)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.30 E-value=6.6e-12 Score=115.67 Aligned_cols=77 Identities=27% Similarity=0.535 Sum_probs=70.9
Q ss_pred CCccEEEEcCCCCC-CCHHHHHHHHhhcCCeEEEEEecC-------CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEE
Q psy14139 211 KTITTLYVGNLGDK-LTEQDLRDHFYQFGEIRSVTILSK-------QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282 (327)
Q Consensus 211 ~~~~tLfVgnLp~~-ite~~Lr~~F~~fG~I~~v~i~~~-------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V 282 (327)
...++|||+|||.+ +++++|+++|++||.|.++++..+ +|+|||+|.+.++|++|+ . ++|..++|+.|+|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~-l~g~~~~g~~i~V 285 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q-MNRSLLGNREISV 285 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G-GTTEEETTEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H-hcCCEECCcEEEE
Confidence 44589999999999 999999999999999999999753 689999999999999999 7 7999999999999
Q ss_pred EeccCCC
Q psy14139 283 KWGRAQA 289 (327)
Q Consensus 283 ~~ak~~~ 289 (327)
.|+++++
T Consensus 286 ~~a~~k~ 292 (292)
T 2ghp_A 286 SLADKKP 292 (292)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9999863
No 195
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.30 E-value=4.5e-12 Score=103.57 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=63.3
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhhcCCeEEEEEecC------CCeEEEEeCC----H-HH---HHHHHH--HhcCCe
Q psy14139 214 TTLYVGNL----GDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTS----R-PA---AEAAVE--HSFNKV 273 (327)
Q Consensus 214 ~tLfVgnL----p~~ite~~Lr~~F~~fG~I~~v~i~~~------kg~aFV~F~~----~-~~---Ae~A~~--~~l~g~ 273 (327)
++|||+|| |..++|.+|+++|++||+|.++.++.+ +|||||+|.+ . ++ |.+|+. . ++|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~-lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHE-SSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTT-TTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhh-hcCC
Confidence 68999999 999999999999999999999999875 6999999995 2 32 777877 4 6999
Q ss_pred EECCeeEEEEeccC
Q psy14139 274 ILGGRRLNIKWGRA 287 (327)
Q Consensus 274 ~i~G~~L~V~~ak~ 287 (327)
.|+|+.|+|.+-+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999987653
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.29 E-value=1.1e-11 Score=113.65 Aligned_cols=74 Identities=19% Similarity=0.323 Sum_probs=69.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 212 ~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
..++|||+|||.++++++|+++|++|| |.++.+...+|+|||+|.+.++|++|++. ++|..+.|+.|+|.|+.+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~~~~~~g~~i~v~~~~~ 94 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINA-FHQSRLRERELSVQLQPT 94 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHH-HTTCEETTEECEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHH-cCCCeeCCeEEEEEecCC
Confidence 347999999999999999999999999 99999988999999999999999999997 799999999999999653
No 197
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5.3e-11 Score=93.51 Aligned_cols=66 Identities=24% Similarity=0.346 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEEec-CCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCCCCC
Q psy14139 223 DKLTEQDLRDHFYQFGEIRSVTILS-KQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291 (327)
Q Consensus 223 ~~ite~~Lr~~F~~fG~I~~v~i~~-~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~~~~ 291 (327)
.+++|++|+++|++||+|.+|.|+. .+|||||+|.+.++|+.|++. +++ +.|++|+|.|+++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~-~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN-EVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT-CCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh-cCC--CCCCeEEEEEccCCCCC
Confidence 4689999999999999999999984 589999999999999999986 444 57999999999887654
No 198
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.25 E-value=9.8e-12 Score=109.85 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=65.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCe--EEEEEecC----CCeEEEEeCCHHHHHHHHHHhcCCeEECCe----eEEE
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEI--RSVTILSK----QQCAFIQYTSRPAAEAAVEHSFNKVILGGR----RLNI 282 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I--~~v~i~~~----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~----~L~V 282 (327)
.++|||+|||.++++++|+++|++||.| .++++..+ +++|||+|.+.++|.+|+.. +||..+.|. ++.|
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~-lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGF-LNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHH-HTTCEECCSSSSSCEEC
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHH-hCCCCccCCCCCcceEE
Confidence 4799999999999999999999999999 89998875 48999999999999999998 799999885 6888
Q ss_pred Eec
Q psy14139 283 KWG 285 (327)
Q Consensus 283 ~~a 285 (327)
+|+
T Consensus 202 k~~ 204 (205)
T 3tyt_A 202 KLC 204 (205)
T ss_dssp EEE
T ss_pred Eec
Confidence 775
No 199
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.21 E-value=3.4e-11 Score=114.44 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=65.6
Q ss_pred CCccEEEEcC--CCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEEC---Ce--eEEEE
Q psy14139 211 KTITTLYVGN--LGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILG---GR--RLNIK 283 (327)
Q Consensus 211 ~~~~tLfVgn--Lp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~---G~--~L~V~ 283 (327)
....+||||| |+..++|++|+++|++||+|.+|.+..++|||||+|.+.++|++|+++ +||..+- |+ .|.|.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~-lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT-LNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHH-TTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH-hCCCccccccCCceEEEEE
Confidence 4457999998 578999999999999999999999988999999999999999999998 6988772 44 67777
Q ss_pred ecc
Q psy14139 284 WGR 286 (327)
Q Consensus 284 ~ak 286 (327)
+..
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 774
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.19 E-value=4.4e-11 Score=109.04 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=70.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEEC---CeeEEEEe
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILG---GRRLNIKW 284 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~---G~~L~V~~ 284 (327)
.++|||+|||..+++++|+++|++||.|.++.++.+ +|+|||+|.+.++|.+|+..+.++..+. |++|.|.|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 479999999999999999999999999999999875 7999999999999999999854676666 89999999
Q ss_pred ccCCCCC
Q psy14139 285 GRAQANR 291 (327)
Q Consensus 285 ak~~~~~ 291 (327)
+.+....
T Consensus 176 ~~~~~~~ 182 (261)
T 3sde_A 176 MEQFDDE 182 (261)
T ss_dssp CCCEESS
T ss_pred ccccCcc
Confidence 9876543
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.18 E-value=1.3e-11 Score=97.58 Aligned_cols=67 Identities=15% Similarity=0.435 Sum_probs=59.1
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeEEEEEecC-----CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeE
Q psy14139 218 VGNLGDKLTEQDLRDHF------------YQFGEIRSVTILSK-----QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRL 280 (327)
Q Consensus 218 VgnLp~~ite~~Lr~~F------------~~fG~I~~v~i~~~-----kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L 280 (327)
+.||+..+++++|+++| ++||.|.++.|..+ +|+|||+|.+.++|++|+.+ +||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~-lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVID-LNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHH-HTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHH-HCCCEECCEEE
Confidence 56777778887777666 99999999999864 79999999999999999998 69999999999
Q ss_pred EEEec
Q psy14139 281 NIKWG 285 (327)
Q Consensus 281 ~V~~a 285 (327)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.13 E-value=1.6e-10 Score=91.37 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=63.9
Q ss_pred ccEEEEcCC--CCCCC--------HHHHHHHHhhcCCeEEEEEecC--------CCeEEEEeCCHHHHHHHHHHhcCCeE
Q psy14139 213 ITTLYVGNL--GDKLT--------EQDLRDHFYQFGEIRSVTILSK--------QQCAFIQYTSRPAAEAAVEHSFNKVI 274 (327)
Q Consensus 213 ~~tLfVgnL--p~~it--------e~~Lr~~F~~fG~I~~v~i~~~--------kg~aFV~F~~~~~Ae~A~~~~l~g~~ 274 (327)
.+.|.+.|+ +.++. +++|++.|++||.|.+|.|..+ +|+|||+|.+.++|++|+.+ +||..
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~-lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQG-LTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHH-HTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHH-hCCCE
Confidence 467888887 33333 4689999999999999999753 69999999999999999998 69999
Q ss_pred ECCeeEEEEeccCC
Q psy14139 275 LGGRRLNIKWGRAQ 288 (327)
Q Consensus 275 i~G~~L~V~~ak~~ 288 (327)
++|+.|+|.+....
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999997643
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.04 E-value=7.9e-10 Score=89.33 Aligned_cols=74 Identities=18% Similarity=0.324 Sum_probs=64.0
Q ss_pred ccEEEEcCCCC--CC---CHHHHHHHHhhcCCeEEEEEecC----------CCeEEEEeCCHHHHHHHHHHhcCCeEECC
Q psy14139 213 ITTLYVGNLGD--KL---TEQDLRDHFYQFGEIRSVTILSK----------QQCAFIQYTSRPAAEAAVEHSFNKVILGG 277 (327)
Q Consensus 213 ~~tLfVgnLp~--~i---te~~Lr~~F~~fG~I~~v~i~~~----------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G 277 (327)
.+.|++.|+-. ++ -+++|++.|++||.|.+|.|..+ +|++||+|.+.++|++|+.+ +||..++|
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~-LnGr~f~G 98 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA-LNGRWFAG 98 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHH-HTTCEETT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHH-HCCCEECC
Confidence 36899999843 22 36899999999999999999763 38999999999999999998 69999999
Q ss_pred eeEEEEeccC
Q psy14139 278 RRLNIKWGRA 287 (327)
Q Consensus 278 ~~L~V~~ak~ 287 (327)
+.|+|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.01 E-value=6.6e-10 Score=89.26 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=55.7
Q ss_pred HHHHHHHHhhcCCeEEEEEecC--CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 227 EQDLRDHFYQFGEIRSVTILSK--QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 227 e~~Lr~~F~~fG~I~~v~i~~~--kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
+++|++.|++||.|.+|.|..+ +|+|||+|.+.++|++|++. +||..++|+.|+|.|+...
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~-lnG~~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNA-LHGRWFAGKMITAAYVPLP 93 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHH-HTTCEETTEECEEEEECHH
T ss_pred HHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHH-hCCCEECCEEEEEEEEcHH
Confidence 4689999999999999999775 69999999999999999998 6999999999999998643
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=3.4e-09 Score=81.11 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=60.9
Q ss_pred cEEEEcCCCC----CCCH----HHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEec
Q psy14139 214 TTLYVGNLGD----KLTE----QDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285 (327)
Q Consensus 214 ~tLfVgnLp~----~ite----~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~a 285 (327)
.|++|.-.+. ++-. .+|.+.|++||+|..+++..++ +||+|.+.++|.+|++ ++|..++|+.|+|+++
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~--mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS--LNGKELLNRTITIALK 83 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG--GTTCEETTEEEEEEEC
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh--cCCeEeCCeEEEEEeC
Confidence 4888877662 3333 5789999999999999999876 8999999999999997 6999999999999998
Q ss_pred cCC
Q psy14139 286 RAQ 288 (327)
Q Consensus 286 k~~ 288 (327)
++.
T Consensus 84 t~d 86 (91)
T 2dnr_A 84 SPS 86 (91)
T ss_dssp CCS
T ss_pred CCC
Confidence 865
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=4e-09 Score=85.40 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=66.8
Q ss_pred CCccEEEEcCCCCC-CCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCC-HHHHHHHHHHhc-CCeEECCeeEEEEec
Q psy14139 211 KTITTLYVGNLGDK-LTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS-RPAAEAAVEHSF-NKVILGGRRLNIKWG 285 (327)
Q Consensus 211 ~~~~tLfVgnLp~~-ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~-~~~Ae~A~~~~l-~g~~i~G~~L~V~~a 285 (327)
+...-|||+||+.+ +++++|+++|++||+|..|.+..+...|||.|.+ ..+|+.|+.++- +++.|+|..++++..
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 45689999999999 9999999999999999999999999999999999 899999999831 478999988777653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=4.5e-08 Score=75.30 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=59.4
Q ss_pred cEEEEcCCCCC------CCH---HHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEe
Q psy14139 214 TTLYVGNLGDK------LTE---QDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284 (327)
Q Consensus 214 ~tLfVgnLp~~------ite---~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ 284 (327)
.|++|.-++.. ..+ .+|.+.|.+||+|..+++..++ +||+|.+.++|.+|++ ++|..++|+.|+|++
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~--ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD--VDGMKVKGRAVKISG 91 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH--GGGSEETTEEEEEEC
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh--cCCeeeCCeEEEEec
Confidence 49999887643 222 4689999999999999999877 9999999999999997 699999999999987
Q ss_pred cc
Q psy14139 285 GR 286 (327)
Q Consensus 285 ak 286 (327)
-.
T Consensus 92 k~ 93 (95)
T 1ufw_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.40 E-value=4e-07 Score=80.55 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHhhcCCeEEEEEe----------cCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 224 KLTEQDLRDHFYQFGEIRSVTIL----------SKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 224 ~ite~~Lr~~F~~fG~I~~v~i~----------~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
+-.+++|++.|++||.|.++.|. +.+|++||+|.+.++|++|+.. ++|..++|+.|+|.+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~-l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA-LNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHH-HTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHH-hcCceECCeEEEEEEcCH
Confidence 34568999999999999999997 3468999999999999999998 799999999999998754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=2.6e-06 Score=66.98 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=66.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhc-----CCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEE
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQF-----GEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~f-----G~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~ 283 (327)
.++|-+-+||+.++...|+.+..++ |.|..|.+.++-+-|+|+|.+...|-+|.-+ ++|..|+|+.|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLa-L~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMI-LNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHH-HSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhh-cCCeeecCeEEEec
Confidence 4788899999999999999999999 9999999999999999999999999999876 79999999999984
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=0.00033 Score=54.46 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=68.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhc-----CCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccC
Q psy14139 213 ITTLYVGNLGDKLTEQDLRDHFYQF-----GEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287 (327)
Q Consensus 213 ~~tLfVgnLp~~ite~~Lr~~F~~f-----G~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~ 287 (327)
.++|.|.|||++++++.|.-+|+.- |+|.++.... +-|+|+|.+.+.|++.++. ..+.++|.+|.|.-.-+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k--~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ--ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC--SCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC--CcceecCeEEEEEcCCC
Confidence 4799999999999999999999872 6899998876 8899999999999999873 57899999999966444
Q ss_pred CCCCCCCcccccccccCCCCCCCC
Q psy14139 288 QANRGEDTAELKVRLEPVPGLPGA 311 (327)
Q Consensus 288 ~~~~~~~~~~~~~~~~pv~Glp~~ 311 (327)
.... .. .+.||+..
T Consensus 84 ~~~~--------r~--ll~gl~~~ 97 (104)
T 2dhx_A 84 RAPA--------RL--LLQGLPPG 97 (104)
T ss_dssp CCCC--------CC--CCCSCCCC
T ss_pred CCcc--------eE--eeecCCCC
Confidence 4322 12 37888633
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.77 E-value=0.00015 Score=56.54 Aligned_cols=75 Identities=11% Similarity=0.192 Sum_probs=65.4
Q ss_pred cEEEEcCCCCCC-C----HHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 214 TTLYVGNLGDKL-T----EQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 214 ~tLfVgnLp~~i-t----e~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
++|+|.||+.++ . .+.++++|..|+++.+....++=.-..|.|.+.++|.+|-.. +++..+.|+.++|.++.+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~-Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLR-LHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHT-STTSEETTEECEEECCCCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHH-hccceecCceeEEEecCCC
Confidence 689999998754 2 257899999999999999998877889999999999999887 7999999999999999844
Q ss_pred C
Q psy14139 289 A 289 (327)
Q Consensus 289 ~ 289 (327)
.
T Consensus 85 ~ 85 (104)
T 1wey_A 85 H 85 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.57 E-value=0.00038 Score=55.64 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=61.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECC-eeEEEEecc
Q psy14139 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGG-RRLNIKWGR 286 (327)
Q Consensus 211 ~~~~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G-~~L~V~~ak 286 (327)
...+-+.|.|+|... -..|.++|++||+|.+........+-.|.|.++.+|++|+. .||..++| ..|-|.+-.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~--kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS--KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT--TTTCEETTTEECEEEECC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH--hCCeEecCCEEEEEEECC
Confidence 345788999999986 46677889999999999886678999999999999999998 49999985 677887743
No 213
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.75 E-value=0.0011 Score=53.74 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=56.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEE-EEEe-------------------cCCCeEEEEeCCHHHHHHHHHHhcCCe
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRS-VTIL-------------------SKQQCAFIQYTSRPAAEAAVEHSFNKV 273 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~-v~i~-------------------~~kg~aFV~F~~~~~Ae~A~~~~l~g~ 273 (327)
+.+.|.|.|++.+ ..+.++|++||.|.+ +.+. ...++..|+|+++.+|.+|+. .||.
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~--~NG~ 84 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL--ENGA 84 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT--TTTC
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH--hCCe
Confidence 5778889987765 667778999999966 2111 136788999999999999998 4999
Q ss_pred EECCeeEEEEeccC
Q psy14139 274 ILGGRRLNIKWGRA 287 (327)
Q Consensus 274 ~i~G~~L~V~~ak~ 287 (327)
+++|..|-|.+-++
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888887753
No 214
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.44 E-value=0.0015 Score=48.16 Aligned_cols=31 Identities=26% Similarity=0.866 Sum_probs=24.8
Q ss_pred CccCCCccccccccccccCCCCCCCCCCCCC
Q psy14139 138 YYKRNRPHICSFWVKGECRRGEECPYRHEKP 168 (327)
Q Consensus 138 ~y~r~~~~~C~ff~kG~C~rG~~Cpy~H~~p 168 (327)
.-+..+..+|.||.+|.|.+|+.|+|.|...
T Consensus 4 ~~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~ 34 (77)
T 2d9n_A 4 GSSGEKTVVCKHWLRGLCKKGDQCEFLHEYD 34 (77)
T ss_dssp CCSCCTTSBCHHHHTTCCSCTTSSSSBCSCC
T ss_pred CCCCCcceeCHhHccCcCCCCCCCCCccccc
Confidence 3334567899999999999999999999754
No 215
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=95.85 E-value=0.0021 Score=46.78 Aligned_cols=26 Identities=31% Similarity=1.128 Sum_probs=23.0
Q ss_pred CCccccccccccccCCCCCCCCCCCC
Q psy14139 142 NRPHICSFWVKGECRRGEECPYRHEK 167 (327)
Q Consensus 142 ~~~~~C~ff~kG~C~rG~~Cpy~H~~ 167 (327)
.+..+|.||.+|.|.+|+.|+|.|..
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~~ 39 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHEY 39 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCSC
T ss_pred CcCeeCHHHhcCCCCCCCCCCCcccc
Confidence 35679999999999999999999974
No 216
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.72 E-value=0.0051 Score=47.48 Aligned_cols=24 Identities=42% Similarity=1.173 Sum_probs=20.1
Q ss_pred CccccccccccccCCCCCCCCCCC
Q psy14139 143 RPHICSFWVKGECRRGEECPYRHE 166 (327)
Q Consensus 143 ~~~~C~ff~kG~C~rG~~Cpy~H~ 166 (327)
+..+|.||.+|.|.+|+.|+|.|.
T Consensus 12 k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCccCcccccCcCCCCCCCCCCCC
Confidence 467888888888888888888886
No 217
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.68 E-value=0.046 Score=41.97 Aligned_cols=52 Identities=23% Similarity=0.410 Sum_probs=43.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHH
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEH 268 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~ 268 (327)
.-++| ++|.++...||.++|+.||.| .|+.+. ---|||.|.+++.|..|+..
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wid-DTsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID-DTSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEE-TTEEEEECSCHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEc-CCeEEEEecCHHHHHHHHHh
Confidence 34555 999999999999999999954 455554 45799999999999999985
No 218
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.67 E-value=0.0027 Score=45.93 Aligned_cols=25 Identities=36% Similarity=1.008 Sum_probs=22.1
Q ss_pred CccccccccccccCCCC-CCCCCCCC
Q psy14139 143 RPHICSFWVKGECRRGE-ECPYRHEK 167 (327)
Q Consensus 143 ~~~~C~ff~kG~C~rG~-~Cpy~H~~ 167 (327)
+..+|.+|.+|.|.+|+ +|+|.|..
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~ 30 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPA 30 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCC
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCc
Confidence 45799999999999999 59999964
No 219
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.51 E-value=0.087 Score=39.92 Aligned_cols=63 Identities=16% Similarity=0.284 Sum_probs=52.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC--------CCeEEEEeCCHHHHHHHHHHhcCCeEECC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK--------QQCAFIQYTSRPAAEAAVEHSFNKVILGG 277 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~--------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G 277 (327)
++|.|.+||+.++|+++.+.++...++.....+.. -.-|||.|.+.+++....+. ++|..+-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~-~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR-FDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH-HTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH-hCCcEEEc
Confidence 57899999999999999999999888776666542 25799999999999999887 68876643
No 220
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.41 E-value=0.017 Score=44.47 Aligned_cols=52 Identities=23% Similarity=0.379 Sum_probs=43.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHh
Q psy14139 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS 269 (327)
Q Consensus 215 tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~ 269 (327)
-|+| ++|.++...||.++|+.||. ..|+.+.+ .-|||.|.+++.|..|+..+
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-TsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-TSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-TEEEEEEEEECHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-CeEEEEecCHHHHHHHHHhc
Confidence 3455 99999999999999999994 45666644 57999999999999999853
No 221
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.34 E-value=0.0096 Score=58.33 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=41.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-CeEEEEeCCHHHHHHHHH
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQ-QCAFIQYTSRPAAEAAVE 267 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~k-g~aFV~F~~~~~Ae~A~~ 267 (327)
+++||. .+..+++.+|.++|++||.|.++.+-.++ .||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 799997 79999999999999999999999988765 589999999999987764
No 222
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=95.02 E-value=0.012 Score=44.02 Aligned_cols=25 Identities=28% Similarity=0.813 Sum_probs=22.2
Q ss_pred ccccccccccccCCCC-CCCCCCCCC
Q psy14139 144 PHICSFWVKGECRRGE-ECPYRHEKP 168 (327)
Q Consensus 144 ~~~C~ff~kG~C~rG~-~Cpy~H~~p 168 (327)
-.+|.+|.+|.|.||+ +|+|.|...
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred chhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 5699999999999997 999999754
No 223
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=94.55 E-value=0.0078 Score=43.42 Aligned_cols=25 Identities=36% Similarity=0.858 Sum_probs=22.0
Q ss_pred CCccccccccccccCCCCCCCCCCCC
Q psy14139 142 NRPHICSFWVKGECRRGEECPYRHEK 167 (327)
Q Consensus 142 ~~~~~C~ff~kG~C~rG~~Cpy~H~~ 167 (327)
.+..+|.+|.+|.|.+| .|+|.|..
T Consensus 40 ~~~~vC~~flkG~C~r~-~C~y~H~~ 64 (70)
T 3d2q_A 40 NTVTVCMDYIKGRCSRE-KCKYFHPP 64 (70)
T ss_dssp TEEEBCHHHHTTCCCCT-TCCSBCCC
T ss_pred CcceeccccCcCCCCCC-CcCeeCCH
Confidence 35679999999999999 89999974
No 224
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.36 E-value=0.016 Score=47.40 Aligned_cols=39 Identities=10% Similarity=0.006 Sum_probs=34.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEeccCC
Q psy14139 249 QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288 (327)
Q Consensus 249 kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak~~ 288 (327)
+|+++|+|.+.++|++|++++.+|..++| .+++.++..+
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 78999999999999999998339999999 9999988753
No 225
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=94.12 E-value=0.017 Score=41.95 Aligned_cols=26 Identities=42% Similarity=1.027 Sum_probs=22.7
Q ss_pred Cccccccccc-cccCCCCCCCCCCCCCC
Q psy14139 143 RPHICSFWVK-GECRRGEECPYRHEKPT 169 (327)
Q Consensus 143 ~~~~C~ff~k-G~C~rG~~Cpy~H~~p~ 169 (327)
+..+|.||.+ |.|.+ +.|+|.|..|.
T Consensus 43 ~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 43 KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 3568999999 99999 99999998764
No 226
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.01 E-value=0.0058 Score=47.19 Aligned_cols=28 Identities=29% Similarity=0.876 Sum_probs=23.9
Q ss_pred CCCccccccccccccCCCC-CCCCCCCCC
Q psy14139 141 RNRPHICSFWVKGECRRGE-ECPYRHEKP 168 (327)
Q Consensus 141 r~~~~~C~ff~kG~C~rG~-~Cpy~H~~p 168 (327)
..+-.+|.+|.+|.|.||+ +|+|.|...
T Consensus 17 ~~k~~VCr~FlrG~C~rgd~~C~FsH~~~ 45 (98)
T 2e5s_A 17 TDKLEVCREFQRGNCARGETDCRFAHPAD 45 (98)
T ss_dssp SSEEEBCSHHHHTCCSSHHHHCSSBCCSS
T ss_pred hhhhhhhHHHhcCcCCCCCCCCCCcCCch
Confidence 3456899999999999999 799999754
No 227
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=94.00 E-value=0.018 Score=43.57 Aligned_cols=25 Identities=28% Similarity=0.848 Sum_probs=22.5
Q ss_pred ccccccccccccCCCC-CCCCCCCCC
Q psy14139 144 PHICSFWVKGECRRGE-ECPYRHEKP 168 (327)
Q Consensus 144 ~~~C~ff~kG~C~rG~-~Cpy~H~~p 168 (327)
-.+|.+|.+|.|.||+ +|+|.|...
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~~~ 42 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHPPK 42 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCCCS
T ss_pred hhhchHHhcCCCCCCCCCCCCcCCCc
Confidence 5799999999999998 999999744
No 228
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.99 E-value=0.025 Score=41.48 Aligned_cols=25 Identities=44% Similarity=1.022 Sum_probs=21.9
Q ss_pred ccccccccc-cccCCCCCCCCCCCCCC
Q psy14139 144 PHICSFWVK-GECRRGEECPYRHEKPT 169 (327)
Q Consensus 144 ~~~C~ff~k-G~C~rG~~Cpy~H~~p~ 169 (327)
..+|.||.+ |.|. |+.|+|.|..|.
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred CCCCcccCCCCccC-CCCeeccCCCcc
Confidence 358999988 9999 899999998764
No 229
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.42 E-value=0.015 Score=44.85 Aligned_cols=26 Identities=35% Similarity=0.810 Sum_probs=22.4
Q ss_pred CCccccccccccccCCCCCCCCCCCCC
Q psy14139 142 NRPHICSFWVKGECRRGEECPYRHEKP 168 (327)
Q Consensus 142 ~~~~~C~ff~kG~C~rG~~Cpy~H~~p 168 (327)
.+..+|.+|.+|.|.|| .|+|.|..+
T Consensus 54 ~~~~vC~~flkG~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 54 NTVTVCMDYIKGRCMRE-KCKYFHPPA 79 (98)
T ss_dssp CEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred CccccchhhccCCCCCC-CcCccCChH
Confidence 35679999999999999 899999643
No 230
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=93.02 E-value=0.07 Score=38.70 Aligned_cols=25 Identities=28% Similarity=0.873 Sum_probs=22.0
Q ss_pred Cccccccc-cccccCCCCCCCCCCCC
Q psy14139 143 RPHICSFW-VKGECRRGEECPYRHEK 167 (327)
Q Consensus 143 ~~~~C~ff-~kG~C~rG~~Cpy~H~~ 167 (327)
+..+|.+| ..|.|..|+.|.|.|..
T Consensus 11 kt~~C~~f~~~G~C~~G~~C~f~H~~ 36 (77)
T 1m9o_A 11 KTELCRTYSESGRCRYGAKCQFAHGL 36 (77)
T ss_dssp CSCCCSGGGGTSCCTTTTTCSSCSSS
T ss_pred cchhCHHhhhCCCcCCCCCccCCCCC
Confidence 46799999 58999999999999974
No 231
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=92.43 E-value=0.038 Score=41.23 Aligned_cols=23 Identities=39% Similarity=0.738 Sum_probs=20.9
Q ss_pred CccccccccccccCCCCCCCCCCC
Q psy14139 143 RPHICSFWVKGECRRGEECPYRHE 166 (327)
Q Consensus 143 ~~~~C~ff~kG~C~rG~~Cpy~H~ 166 (327)
+..+|.+|.+|.|.|+ .|+|.|.
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~ 64 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHP 64 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCC
T ss_pred ceeehhHhhhccccCC-CcceeCC
Confidence 4579999999999999 8999996
No 232
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.34 E-value=0.27 Score=37.61 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=47.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecC--------CCeEEEEeCCHHHHHHHHHHhcCCeEECC
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK--------QQCAFIQYTSRPAAEAAVEHSFNKVILGG 277 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~--------kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G 277 (327)
-+|.|..||+.+||+++.+.++.+=++.....+.. -.-|||.|.+.++.....+. ++|..+-+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~-f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR-FDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH-STTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH-cCCcEEEe
Confidence 47899999999999998887776544322222211 25699999999999999987 79877644
No 233
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=90.78 E-value=0.2 Score=40.84 Aligned_cols=22 Identities=9% Similarity=-0.001 Sum_probs=19.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHh
Q psy14139 248 KQQCAFIQYTSRPAAEAAVEHS 269 (327)
Q Consensus 248 ~kg~aFV~F~~~~~Ae~A~~~~ 269 (327)
.+|+|||+|.+.++|++|++.+
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~ 33 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQY 33 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhh
Confidence 3799999999999999999873
No 234
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=90.09 E-value=0.13 Score=39.44 Aligned_cols=24 Identities=25% Similarity=0.908 Sum_probs=21.2
Q ss_pred ccccccc-cccccCCCCCCCCCCCC
Q psy14139 144 PHICSFW-VKGECRRGEECPYRHEK 167 (327)
Q Consensus 144 ~~~C~ff-~kG~C~rG~~Cpy~H~~ 167 (327)
..+|.|| .+|.|.+|+.|.|.|..
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~ 60 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDP 60 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCC
Confidence 4579999 69999999999999973
No 235
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=89.79 E-value=0.061 Score=39.01 Aligned_cols=25 Identities=24% Similarity=0.809 Sum_probs=0.0
Q ss_pred ccccccc-cccccCCCCCCCCCCCCC
Q psy14139 144 PHICSFW-VKGECRRGEECPYRHEKP 168 (327)
Q Consensus 144 ~~~C~ff-~kG~C~rG~~Cpy~H~~p 168 (327)
..+|.+| ..|.|.+|..|.|.|...
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp --------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCCCC
Confidence 4689755 789999999999999753
No 236
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=88.83 E-value=0.1 Score=39.32 Aligned_cols=23 Identities=39% Similarity=0.738 Sum_probs=20.9
Q ss_pred CccccccccccccCCCCCCCCCCC
Q psy14139 143 RPHICSFWVKGECRRGEECPYRHE 166 (327)
Q Consensus 143 ~~~~C~ff~kG~C~rG~~Cpy~H~ 166 (327)
+..+|.+|.+|.|.|+ .|+|.|.
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~ 72 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHP 72 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ceeeehhhhhCcCCCC-CcceecC
Confidence 4679999999999999 7999996
No 237
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=88.72 E-value=0.037 Score=41.22 Aligned_cols=45 Identities=20% Similarity=0.451 Sum_probs=30.8
Q ss_pred cccchhhhhccccCCcccccCCcceeEEecCCCCCcccchhhhhhhhccc
Q psy14139 11 NRQSWEDATKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLK 60 (327)
Q Consensus 11 ~~~~~e~~~k~~~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~k 60 (327)
.+..|.. .....+|.+|..+||+|+.+ .+-|.=--++|..|+..+
T Consensus 11 ~~~~W~p---d~~~~~C~~C~~~Fs~~~Rr--HHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 11 SKGYWQE---DEDAPACNGCGCVFTTTVRR--HHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCSCCCC---TTTCCBCTTTCCBCCTTSCC--EECTTTCCEECTGGGCCE
T ss_pred CCCcccc---CCCCCCCcCcCCccccchhc--ccccCCCcEEChHHhCCe
Confidence 4567753 34567999999999998754 234444457788887654
No 238
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.21 E-value=0.15 Score=36.44 Aligned_cols=22 Identities=32% Similarity=0.982 Sum_probs=20.9
Q ss_pred cccccccccccCCCCCCCCCCC
Q psy14139 145 HICSFWVKGECRRGEECPYRHE 166 (327)
Q Consensus 145 ~~C~ff~kG~C~rG~~Cpy~H~ 166 (327)
.+|..|.+|.|..|+.|.|.|.
T Consensus 21 ~LC~~~~~G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 21 SICDRYMNGTCPEGNSCKFAHG 42 (69)
T ss_dssp SBCHHHHHSCCSSCSSCSSBSS
T ss_pred ccCcccCcCCCCCCCccCCcCC
Confidence 6999999999999999999996
No 239
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=87.83 E-value=0.063 Score=39.75 Aligned_cols=38 Identities=21% Similarity=0.486 Sum_probs=26.2
Q ss_pred cccCCcccccCCcceeEEecCCCCCcccchhhhhhhhccc
Q psy14139 21 EKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLK 60 (327)
Q Consensus 21 ~~~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~k 60 (327)
......|.+|..+||+|+.+= +-|.=--++|..|+..+
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrH--HCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKH--HCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCE--ECTTTCCEECSGGGCEE
T ss_pred CccCCcccCcCCcccCccccc--cCCCCCCEEChHHhCCe
Confidence 345568999999999987652 23433446777777654
No 240
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=87.32 E-value=0.22 Score=33.04 Aligned_cols=26 Identities=31% Similarity=0.721 Sum_probs=22.8
Q ss_pred Cccccccc-cccccCCCCCCCCCCCCC
Q psy14139 143 RPHICSFW-VKGECRRGEECPYRHEKP 168 (327)
Q Consensus 143 ~~~~C~ff-~kG~C~rG~~Cpy~H~~p 168 (327)
...||.-| +-|.|..|..||+.|...
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCC
Confidence 46799999 889999999999999754
No 241
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=86.48 E-value=0.088 Score=41.99 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=32.6
Q ss_pred cCCcccccCCcceeEEecCCCCCcccchhhhhhhhccc----Cccccccccc
Q psy14139 23 YGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLK----NVCQTCLLDL 70 (327)
Q Consensus 23 ~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~k----n~cq~c~ldl 70 (327)
....|..|..+||+|+++ .+-|.=--++|.+|+..+ .||..|..-+
T Consensus 18 ~~~~C~~C~~~Fs~~~Rk--HHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARK--QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGC--EECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred ccCcccCcCCcccccccc--ccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 346899999999998765 234444567899998765 7899996443
No 242
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=85.79 E-value=0.064 Score=38.80 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=21.6
Q ss_pred CcccccCCcceeEEecCCCCCcccchhhhhhhhc
Q psy14139 25 KECKICARPFTVFRWCPGARMRFKKTEVCQTCAR 58 (327)
Q Consensus 25 ~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~ 58 (327)
.+|.+|.++||+|+.+ .+-|.=--++|..|+.
T Consensus 12 ~~C~~C~~~F~~~~Rr--HHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRK--HHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCC--EECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCcccc--ccCCCCCEEEcccccC
Confidence 5899999999998653 2233333456666664
No 243
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=84.89 E-value=0.14 Score=38.55 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=25.9
Q ss_pred cccCCcccccCCcceeEEecCCCCCcccchhhhhhhhccc
Q psy14139 21 EKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLK 60 (327)
Q Consensus 21 ~~~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~k 60 (327)
.....+|.+|..+|++|+.+ .+-|.=--++|..|+..+
T Consensus 17 d~~~~~C~~C~~~F~~~~Rr--hhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRR--HHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCC--EECTTTCCEECGGGSCEE
T ss_pred cccCCcCcCCCCcccchhhC--ccccCCCCEECCcccCCe
Confidence 34567899999999987654 234444556777776653
No 244
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=82.82 E-value=0.17 Score=40.60 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=24.7
Q ss_pred cccCCcccccCCcceeEEecCCCCCcccchhhhhhhhccc
Q psy14139 21 EKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLK 60 (327)
Q Consensus 21 ~~~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~k 60 (327)
...-..|.+|..+||+|+.+ .+-|.=--++|..|+..+
T Consensus 66 d~~~~~C~~C~~~Fs~~~Rr--HHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRR--HHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCC--EECTTTCCEECGGGSCEE
T ss_pred CCCCCCCcCcCCcccccccc--ccCCCCCeEEChHHhCCc
Confidence 34567899999999998643 223333346677776543
No 245
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=80.99 E-value=0.12 Score=38.76 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=22.1
Q ss_pred cCCcccccCCcceeEEecCCCCCcccchhhhhhhhcc
Q psy14139 23 YGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARL 59 (327)
Q Consensus 23 ~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~ 59 (327)
...+|.+|..+||+|+.+- +-|.=--++|..|+..
T Consensus 8 ~~~~C~~C~~~F~~~~RrH--HCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEY--GCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEE--ECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccc--cCCCCCCEEChhHcCC
Confidence 3468999999999986542 2232233556666543
No 246
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.74 E-value=0.16 Score=37.76 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=24.2
Q ss_pred cccCCcccccCCcceeEEecCCCCCcccchhhhhhhhcc
Q psy14139 21 EKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARL 59 (327)
Q Consensus 21 ~~~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~ 59 (327)
...-.+|-+|..+||+|+.+ .+-|.=--++|..|+..
T Consensus 11 d~~~~~C~~C~~~F~~~~Rr--HHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKR--RSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCC--EECSSSCCEECTTTSCE
T ss_pred CCCCCcCcCcCCccccchhh--hhhcCCCcEEChhhcCC
Confidence 34567899999999998543 22333344666666643
No 247
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.37 E-value=5.2 Score=39.37 Aligned_cols=53 Identities=25% Similarity=0.406 Sum_probs=43.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCeEEEEeCCHHHHHHHHHHh
Q psy14139 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS 269 (327)
Q Consensus 214 ~tLfVgnLp~~ite~~Lr~~F~~fG~I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~ 269 (327)
..++|+ +|..+...+|.+.|+.||.+ +|+.+ +..+|||.|.+.+.|+.++.++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SSSEEEEECSCHHHHHHHHHHH
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cCCeEEEEECCHHHHHHHHHHH
Confidence 466666 99999999999999999954 45544 4577999999999999999874
No 248
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=76.86 E-value=0.19 Score=44.11 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=22.7
Q ss_pred CCcccccCCcceeEEecCCCCCcccchhhhhhhhcc
Q psy14139 24 GKECKICARPFTVFRWCPGARMRFKKTEVCQTCARL 59 (327)
Q Consensus 24 g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~ 59 (327)
+.+|-+|..+||+|+++ .+-|.=--++|..|+..
T Consensus 161 ~~~C~~C~~~F~~~~rr--hhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRK--HHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCC--EECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccc--cccCCcCCEEChHHhCC
Confidence 47999999999988764 22333334566666654
No 249
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.04 E-value=2.4 Score=30.76 Aligned_cols=56 Identities=23% Similarity=0.430 Sum_probs=38.4
Q ss_pred CCCCCcccccchhhhhc---cccCCcccccCCcceeEEecCCCCCcccchhhhhhhhcccCccccccccc
Q psy14139 4 SKTSSTYNRQSWEDATK---EKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDL 70 (327)
Q Consensus 4 ~~~~~~~~~~~~e~~~k---~~~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~ldl 70 (327)
|-++|.+--..|-...+ ....+.|-.|.++|.. -+-+..+|+.|. ++||+-|-...
T Consensus 2 ~~~~~eL~elrrkgak~~s~~~~~r~CarC~~~LG~---------l~~~g~~C~~Ck--~rVC~~Crv~~ 60 (76)
T 2csz_A 2 SSGSSGLLEIKRKGAKRGSQHYSDRTCARCQESLGR---------LSPKTNTCRGCN--HLVCRDCRIQE 60 (76)
T ss_dssp CCCCCCCCCCCCCCSCSCCTTCCCCBCSSSCCBCSS---------SCTTTSEETTTT--EECCTTSEEEC
T ss_pred chhHHHHHHHHHccccCcCcCCCccchhhhCccccc---------cccCCCcCcccC--hhhcccccccC
Confidence 34555555555554432 4567899999999942 245778899997 68999996543
No 250
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=70.31 E-value=0.61 Score=41.02 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=21.2
Q ss_pred CCcccccCCcceeEEecCCCCCcccchhhhhhhhc
Q psy14139 24 GKECKICARPFTVFRWCPGARMRFKKTEVCQTCAR 58 (327)
Q Consensus 24 g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~ 58 (327)
+.+|-+|..+||+|+.+ .+-|.=--++|..|+.
T Consensus 164 ~~~C~~C~~~F~~~~Rr--hHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRK--HHCRACGQIFCGKCSS 196 (226)
T ss_dssp CSBCTTTCCBCBTTBCC--EECTTTCCEECTTTCC
T ss_pred CCCCcCcCCCCCccccc--cccCCCcCEeChhhcC
Confidence 35899999999988654 2233333445555554
No 251
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=57.75 E-value=2.1 Score=40.69 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred ccCCcccccCCcceeEEecCCCCCcccchhhhhhhh
Q psy14139 22 KYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCA 57 (327)
Q Consensus 22 ~~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca 57 (327)
.....|-+|..+||+|+.+ .+-|.=-.++|..|+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~--h~Cr~Cg~~~C~~Cs 406 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRR--HHCHACGKIVCRNCS 406 (434)
T ss_dssp ------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchh--hhcccCcCEeehhhC
Confidence 4467899999999988653 223322334555554
No 252
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=54.50 E-value=2.4 Score=34.99 Aligned_cols=34 Identities=18% Similarity=0.476 Sum_probs=20.5
Q ss_pred cCCcccccCCcceeEEecCCCCCcccchhhhhhhh
Q psy14139 23 YGKECKICARPFTVFRWCPGARMRFKKTEVCQTCA 57 (327)
Q Consensus 23 ~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca 57 (327)
....|-+|..||+.+ +..|..-..=++-||..|.
T Consensus 67 ~~~~C~~C~~~fg~l-~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLL-LNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGC-SSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccc-cCCCCcCCCCCchhhcccc
Confidence 568899999999844 4444333333444444444
No 253
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=46.41 E-value=6.8 Score=34.32 Aligned_cols=27 Identities=26% Similarity=0.711 Sum_probs=22.1
Q ss_pred Ccccccccccccc----CCCCCCCCCCCCCC
Q psy14139 143 RPHICSFWVKGEC----RRGEECPYRHEKPT 169 (327)
Q Consensus 143 ~~~~C~ff~kG~C----~rG~~Cpy~H~~p~ 169 (327)
.=|+|.||+.|.| .++..|.|.|..-+
T Consensus 88 ~LHLCK~~l~G~C~~~~~~~~~Ck~SHdi~s 118 (229)
T 3u9g_A 88 SLHLCKLNLLGRCHYAQSQRNLCKYSHDVLS 118 (229)
T ss_dssp SBCCCHHHHTTCCGGGTCCSSCCSSCSCTTC
T ss_pred ceeechhhhcCcCCcccCCCCCcccccccCc
Confidence 3589999999999 45788999997543
No 254
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=45.81 E-value=10 Score=28.96 Aligned_cols=36 Identities=33% Similarity=0.776 Sum_probs=26.6
Q ss_pred cccccCCcceeEEe-cCCCCCcccchhhhhhhhcc-----cCcccccc
Q psy14139 26 ECKICARPFTVFRW-CPGARMRFKKTEVCQTCARL-----KNVCQTCL 67 (327)
Q Consensus 26 eckic~rpft~f~w-~~~~~~~~kkt~ic~~ca~~-----kn~cq~c~ 67 (327)
-|-+|..||.+|-= -|= |-..|..||.+ -+.|--|-
T Consensus 3 fC~~C~~Pi~iygRmIPC------kHvFCydCa~~~~~~~~k~Cp~C~ 44 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPC------KHVFCYDCAILHEKKGDKMCPGCS 44 (101)
T ss_dssp BCTTTCSBCSEEEEEETT------CCEEEHHHHHHHHHTTCCBCTTTC
T ss_pred ecCccCCCeEEEeeeccc------cccHHHHHHHHHHhccCCCCcCcC
Confidence 38899999999832 333 44899999954 46887775
No 255
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=40.96 E-value=11 Score=33.12 Aligned_cols=22 Identities=32% Similarity=0.830 Sum_probs=14.7
Q ss_pred ccccccccccccCCCCCCCCCCC
Q psy14139 144 PHICSFWVKGECRRGEECPYRHE 166 (327)
Q Consensus 144 ~~~C~ff~kG~C~rG~~Cpy~H~ 166 (327)
=|||.+|++|+|+. ..|...|.
T Consensus 175 LHIC~~Fl~G~C~f-~~CkRsH~ 196 (229)
T 3u9g_A 175 LHICEHFTRGNCSY-LNCLRSHN 196 (229)
T ss_dssp BCSCHHHHTTCCCC-SSCSSCCC
T ss_pred eeccchhhcCCcCC-CCccCccC
Confidence 46677777777766 56766664
No 256
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=38.12 E-value=10 Score=19.77 Aligned_cols=10 Identities=30% Similarity=1.022 Sum_probs=8.1
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|.+.|+
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 2m0e_A 4 KCPHCDKKFN 13 (29)
T ss_dssp CCSSCCCCCC
T ss_pred cCCCCCcccC
Confidence 6889998884
No 257
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=37.62 E-value=8.9 Score=20.15 Aligned_cols=10 Identities=30% Similarity=1.238 Sum_probs=8.3
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|.+.|+
T Consensus 5 ~C~~C~k~f~ 14 (28)
T 2kvf_A 5 SCSVCGKRFS 14 (28)
T ss_dssp ECSSSCCEES
T ss_pred cCCCCCcccC
Confidence 6999999884
No 258
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=37.45 E-value=11 Score=19.53 Aligned_cols=10 Identities=40% Similarity=1.265 Sum_probs=7.9
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|.+.|.
T Consensus 3 ~C~~C~k~f~ 12 (27)
T 1znf_A 3 KCGLCERSFV 12 (27)
T ss_dssp BCSSSCCBCS
T ss_pred cCCCCCCcCC
Confidence 6888988883
No 259
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=36.84 E-value=7.5 Score=29.50 Aligned_cols=36 Identities=25% Similarity=0.696 Sum_probs=26.7
Q ss_pred ccCCcccccCC-cceeEEecCCCCCcccchhhhhhhhcccCccccccccc
Q psy14139 22 KYGKECKICAR-PFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDL 70 (327)
Q Consensus 22 ~~g~eckic~r-pft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~ldl 70 (327)
-.|..|..|.. |++=+||+ |..|.. =..||.|...-
T Consensus 29 H~gv~Cd~C~~~pI~G~Ryk------------C~~C~d-~DLC~~C~~~~ 65 (98)
T 2dip_A 29 HLGIPCNNCKQFPIEGKCYK------------CTECIE-YHLCQECFDSY 65 (98)
T ss_dssp CCCCCCSSSCCSSCCSCEEE------------ESSSSS-CEEEHHHHHTT
T ss_pred cCCCCCcCCCCCCcccCeEE------------CCCCCC-ccHHHHHHccC
Confidence 35689999996 88777875 777766 37888885443
No 260
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=36.82 E-value=15 Score=26.89 Aligned_cols=36 Identities=31% Similarity=0.781 Sum_probs=26.9
Q ss_pred ccCCcccccCC-cceeEEecCCCCCcccchhhhhhhhcc--cCcccccccc
Q psy14139 22 KYGKECKICAR-PFTVFRWCPGARMRFKKTEVCQTCARL--KNVCQTCLLD 69 (327)
Q Consensus 22 ~~g~eckic~r-pft~f~w~~~~~~~~kkt~ic~~ca~~--kn~cq~c~ld 69 (327)
-.|-.|..|.. |+.=+||+ |..|... =..||.|...
T Consensus 19 H~~~~Cd~C~~~pI~G~Ryk------------C~~C~d~~~yDLC~~C~~~ 57 (82)
T 2fc7_A 19 HVGFKCDNCGIEPIQGVRWH------------CQDCPPEMSLDFCDSCSDC 57 (82)
T ss_dssp ESSCCCSSSCCSSEESCEEE------------ESSSCSSSCCEEEGGGTTC
T ss_pred eCcCCCCCCCCCcceeceEE------------CCcCCCCcceecHHHHHhC
Confidence 45889999996 88888986 6666542 3588888754
No 261
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=35.96 E-value=11 Score=19.76 Aligned_cols=10 Identities=20% Similarity=0.640 Sum_probs=8.2
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|++.|.
T Consensus 4 ~C~~C~k~f~ 13 (30)
T 1klr_A 4 QCQYCEFRSA 13 (30)
T ss_dssp CCSSSSCCCS
T ss_pred cCCCCCCccC
Confidence 6889998884
No 262
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=35.62 E-value=11 Score=19.68 Aligned_cols=10 Identities=40% Similarity=1.285 Sum_probs=8.1
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|.+.|+
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 1ard_A 4 VCEVCTRAFA 13 (29)
T ss_dssp BCTTTCCBCS
T ss_pred ECCCCCcccC
Confidence 6889988884
No 263
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=35.22 E-value=25 Score=19.24 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=5.9
Q ss_pred CCCCCCCCCC
Q psy14139 317 KDFFNLSNPV 326 (327)
Q Consensus 317 ~~~~~~~pp~ 326 (327)
.|-|-+||||
T Consensus 7 hnmfsvpppp 16 (26)
T 2bn5_B 7 HNMFSVPPPP 16 (26)
T ss_dssp CCCCSCCCCS
T ss_pred CceecCCCCC
Confidence 4556666665
No 264
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=35.08 E-value=5.5 Score=32.04 Aligned_cols=40 Identities=25% Similarity=0.607 Sum_probs=27.3
Q ss_pred ccCCcccccCCcceeEEecCCCCCcccchhhhhhhhcccCcccccccccCC
Q psy14139 22 KYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEY 72 (327)
Q Consensus 22 ~~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~ldl~~ 72 (327)
.....|-+|..||+ |-...| .+|..|. ++||+.|-....+
T Consensus 53 ~~~~~C~~C~~~~g-~l~~~g--------~~C~~C~--~~VC~~C~~~~~~ 92 (134)
T 1zbd_B 53 DGVNRCILCGEQLG-MLGSAS--------VVCEDCK--KNVCTKCGVETSN 92 (134)
T ss_dssp CSSSBCSSSCCBCS-TTSCCE--------EECTTTC--CEEETTSEEECCC
T ss_pred CCCccccccCCCcc-cccCCC--------CCCCCCC--cccccccCCccCC
Confidence 35577999999996 444433 4677775 5778777766543
No 265
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=41.29 E-value=8.1 Score=20.03 Aligned_cols=10 Identities=30% Similarity=0.972 Sum_probs=8.2
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|++.|+
T Consensus 4 ~C~~C~k~f~ 13 (26)
T 2lvu_A 4 VCERCGKRFV 13 (26)
Confidence 6889998884
No 266
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.59 E-value=11 Score=19.68 Aligned_cols=10 Identities=40% Similarity=1.222 Sum_probs=7.9
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|.+.|+
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 2m0f_A 4 KCRECGKQFT 13 (29)
T ss_dssp ECTTTSCEES
T ss_pred cCCCCCCccC
Confidence 5888888874
No 267
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=33.13 E-value=1e+02 Score=21.17 Aligned_cols=68 Identities=13% Similarity=0.316 Sum_probs=40.2
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhhcCC-----eEEEEEecCCCeEEEEeCCHHHHHHHHHHhcCCeEECCeeEEEEecc
Q psy14139 215 TLYVG-NLGDKLTEQDLRDHFYQFGE-----IRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286 (327)
Q Consensus 215 tLfVg-nLp~~ite~~Lr~~F~~fG~-----I~~v~i~~~kg~aFV~F~~~~~Ae~A~~~~l~g~~i~G~~L~V~~ak 286 (327)
+|||+ +--..+...+|..++..-+. |-.|.+. ..+.||+-... .|+.+++. +++..+.|+.++|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~~-~~~~~~~~-l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILNG-KGPHVLKV-MKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECTT-CHHHHHHH-HTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECHH-HHHHHHHH-hccccCcCceEEEEECC
Confidence 56664 22235666777777775543 4455554 56888888654 56667776 68888999999887654
No 268
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=33.06 E-value=13 Score=21.02 Aligned_cols=11 Identities=36% Similarity=0.918 Sum_probs=9.2
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
-+|.+|.+.|.
T Consensus 12 ~~C~~C~k~f~ 22 (37)
T 1p7a_A 12 FQCPDCDRSFS 22 (37)
T ss_dssp BCCTTTCCCBS
T ss_pred ccCCCCCcccC
Confidence 47999999994
No 269
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.00 E-value=13 Score=20.84 Aligned_cols=11 Identities=27% Similarity=1.014 Sum_probs=9.1
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
-+|.+|.+.|+
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elr_A 10 HLCDMCGKKFK 20 (36)
T ss_dssp CBCTTTCCBCS
T ss_pred eecCcCCCCcC
Confidence 47999999884
No 270
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.76 E-value=12 Score=19.48 Aligned_cols=10 Identities=20% Similarity=0.800 Sum_probs=8.2
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|++.|.
T Consensus 5 ~C~~C~k~f~ 14 (27)
T 2kvh_A 5 SCSLCPQRSR 14 (27)
T ss_dssp ECSSSSCEES
T ss_pred cCCCcChhhC
Confidence 6899998884
No 271
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=32.53 E-value=12 Score=19.63 Aligned_cols=10 Identities=30% Similarity=0.939 Sum_probs=7.9
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|.+.|+
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 1rik_A 4 ACPECPKRFM 13 (29)
T ss_dssp ECSSSSCEES
T ss_pred cCCCCCchhC
Confidence 6888888884
No 272
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=30.98 E-value=15 Score=19.40 Aligned_cols=10 Identities=50% Similarity=1.295 Sum_probs=8.0
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|++.|.
T Consensus 4 ~C~~C~k~f~ 13 (30)
T 1paa_A 4 ACGLCNRAFT 13 (30)
T ss_dssp BCTTTCCBCS
T ss_pred CCcccCcccC
Confidence 6888988883
No 273
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=30.92 E-value=13 Score=20.74 Aligned_cols=10 Identities=50% Similarity=1.205 Sum_probs=8.5
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|.+.|+
T Consensus 9 ~C~~C~k~f~ 18 (35)
T 1srk_A 9 VCRICLSAFT 18 (35)
T ss_dssp ECSSSCCEES
T ss_pred eCCCCCcccC
Confidence 6999999884
No 274
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.54 E-value=10 Score=20.02 Aligned_cols=10 Identities=20% Similarity=0.736 Sum_probs=8.1
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|++.|+
T Consensus 5 ~C~~C~k~f~ 14 (27)
T 2kvg_A 5 RCPLCRAGCP 14 (27)
T ss_dssp EETTTTEEES
T ss_pred CCCCCCcccC
Confidence 6889998884
No 275
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.59 E-value=14 Score=20.65 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=8.9
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
-+|.+|.+.|+
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elt_A 10 YKCPQCSYASA 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred CCCCCCCcccC
Confidence 37999999884
No 276
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=35.44 E-value=11 Score=19.87 Aligned_cols=10 Identities=40% Similarity=1.281 Sum_probs=8.1
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|.+.|+
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 2lvt_A 4 QCVMCGKAFT 13 (29)
Confidence 6888988874
No 277
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=28.84 E-value=17 Score=20.25 Aligned_cols=10 Identities=30% Similarity=0.939 Sum_probs=7.9
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|.+.|+
T Consensus 4 ~C~~C~k~F~ 13 (33)
T 1rim_A 4 ACPECPKRFM 13 (33)
T ss_dssp CCSSSCCCCS
T ss_pred cCCCCCchhC
Confidence 6888888884
No 278
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.67 E-value=25 Score=24.21 Aligned_cols=49 Identities=20% Similarity=0.485 Sum_probs=35.0
Q ss_pred ccccCCcccccCCcceeEEecCCCCCcccchhhhhhhhcccCcccccccccCCC
Q psy14139 20 KEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYG 73 (327)
Q Consensus 20 k~~~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~ldl~~~ 73 (327)
-+....+|.||---+..--+-|-. ...+|..|+..-..|..|-..++--
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCg-----H~~~C~~C~~~~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCR-----HTCLCDGCVKYFQQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTT-----BCCSCTTHHHHCSSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCCCCEEEECCC-----ChhhhHHHHhcCCCCCCCCcchhce
Confidence 345578999997766544444432 3458999999888999998877643
No 279
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=34.46 E-value=12 Score=19.77 Aligned_cols=10 Identities=40% Similarity=0.956 Sum_probs=8.2
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|.+.|+
T Consensus 5 ~C~~C~k~f~ 14 (30)
T 2lvr_A 5 VCIHCQRQFA 14 (30)
Confidence 6889998884
No 280
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.98 E-value=16 Score=20.24 Aligned_cols=11 Identities=27% Similarity=0.887 Sum_probs=8.8
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
-+|.+|.+.|+
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 2elx_A 8 YVCALCLKKFV 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCcchhC
Confidence 37999999884
No 281
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.62 E-value=16 Score=19.11 Aligned_cols=10 Identities=40% Similarity=1.285 Sum_probs=7.9
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
.|.+|++.|.
T Consensus 5 ~C~~C~~~f~ 14 (30)
T 2m0d_A 5 QCDYCGRSFS 14 (30)
T ss_dssp ECTTTCCEES
T ss_pred cCCCCCcccC
Confidence 5888888874
No 282
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.47 E-value=17 Score=20.49 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=8.9
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
-+|.+|.+.|+
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elq_A 10 FKCSLCEYATR 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 37999999884
No 283
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=26.77 E-value=17 Score=20.04 Aligned_cols=10 Identities=30% Similarity=1.002 Sum_probs=8.0
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|++.|+
T Consensus 4 ~C~~C~k~f~ 13 (32)
T 2kfq_A 4 ACPACPKRFM 13 (32)
T ss_dssp SSSSSCTTHH
T ss_pred CCCCCCcccC
Confidence 6888888884
No 284
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.58 E-value=36 Score=23.59 Aligned_cols=49 Identities=22% Similarity=0.511 Sum_probs=33.2
Q ss_pred ccCCcccccCCcceeEEecCCCCCcccchhhhhhhhcccCcccccccccCCCCc
Q psy14139 22 KYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLP 75 (327)
Q Consensus 22 ~~g~eckic~rpft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~ldl~~~lp 75 (327)
....+|.||--.|.--..-|- ..+..|..|++....|-.|-..++--+.
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pC-----gH~~~C~~C~~~~~~CP~Cr~~i~~~~~ 71 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPC-----GHLVTCKQCAEAVDKCPMCYTVITFKQK 71 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSS-----CCCCBCHHHHHHCSBCTTTCCBCCCCCB
T ss_pred CCCCCCCcCCCCCCCEEEecC-----CCHHHHHHHhhCCCCCccCCceecCcEE
Confidence 445689999766643222232 2344799999988999999887765444
No 285
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=25.28 E-value=33 Score=24.14 Aligned_cols=20 Identities=20% Similarity=0.617 Sum_probs=14.5
Q ss_pred CCcccccCCcceeEEecCCCCCc
Q psy14139 24 GKECKICARPFTVFRWCPGARMR 46 (327)
Q Consensus 24 g~eckic~rpft~f~w~~~~~~~ 46 (327)
-+-|-||.+||+ |.+...-|
T Consensus 9 ~~~CP~Cgkp~~---W~~~~~~r 28 (68)
T 1lv3_A 9 TVNCPTCGKTVV---WGEISPFR 28 (68)
T ss_dssp EEECTTTCCEEE---CSSSSSCC
T ss_pred cCcCCCCCCccc---ccccCCCC
Confidence 357999999997 76654433
No 286
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.38 E-value=23 Score=20.23 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=8.4
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|++.|+
T Consensus 11 ~C~~C~k~f~ 20 (37)
T 2elm_A 11 YCSQCHYSSI 20 (37)
T ss_dssp ECSSSSCEEE
T ss_pred ECCCCCcccC
Confidence 6999999884
No 287
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.35 E-value=20 Score=20.08 Aligned_cols=10 Identities=50% Similarity=1.381 Sum_probs=8.4
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|.+.|+
T Consensus 11 ~C~~C~k~f~ 20 (36)
T 2elv_A 11 DCHICERKFK 20 (36)
T ss_dssp ECSSSCCEES
T ss_pred ECCCCCCccC
Confidence 6999999884
No 288
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.83 E-value=22 Score=20.09 Aligned_cols=11 Identities=27% Similarity=0.645 Sum_probs=8.9
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
-+|.+|.+.|+
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elp_A 10 MKCPYCDFYFM 20 (37)
T ss_dssp EECSSSSCEEC
T ss_pred eECCCCChhhc
Confidence 37999999884
No 289
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.18 E-value=21 Score=19.97 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=8.8
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
-+|.+|.+.|+
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2els_A 10 FTCEYCNKVFK 20 (36)
T ss_dssp EECTTTCCEES
T ss_pred EECCCCCceeC
Confidence 36999999884
No 290
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=23.01 E-value=22 Score=20.51 Aligned_cols=10 Identities=40% Similarity=1.152 Sum_probs=8.3
Q ss_pred cccccCCcce
Q psy14139 26 ECKICARPFT 35 (327)
Q Consensus 26 eckic~rpft 35 (327)
+|.+|.+.|+
T Consensus 8 ~C~~C~k~f~ 17 (39)
T 1njq_A 8 TCSFCKREFR 17 (39)
T ss_dssp ECTTTCCEES
T ss_pred ECCCCCcccC
Confidence 6999998884
No 291
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.55 E-value=26 Score=25.80 Aligned_cols=11 Identities=36% Similarity=1.065 Sum_probs=8.8
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
-.|.||+|.|-
T Consensus 30 ~pCRvC~RvfH 40 (89)
T 1wil_A 30 FPCRVCTRVFH 40 (89)
T ss_dssp SSCSSSSSCCC
T ss_pred ecccccccccc
Confidence 46999999883
No 292
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.47 E-value=17 Score=20.49 Aligned_cols=11 Identities=27% Similarity=1.065 Sum_probs=8.8
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
-+|.+|.+.|+
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elo_A 10 YSCPVCEKSFS 20 (37)
T ss_dssp CEETTTTEECS
T ss_pred cCCCCCCCccC
Confidence 37999998884
No 293
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.95 E-value=29 Score=20.27 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=9.1
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
-+|.+|++.|+
T Consensus 12 ~~C~~C~k~f~ 22 (42)
T 2eos_A 12 YPCEICGTRFR 22 (42)
T ss_dssp BCCSSSCCCBS
T ss_pred EECCCCCCccC
Confidence 37999999885
No 294
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.86 E-value=27 Score=20.25 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=8.9
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
-+|.+|.+.|+
T Consensus 11 ~~C~~C~k~f~ 21 (42)
T 2yte_A 11 YSCAECKETFS 21 (42)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCCccC
Confidence 47999999884
No 295
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.83 E-value=28 Score=20.82 Aligned_cols=11 Identities=36% Similarity=0.942 Sum_probs=9.1
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
-+|.+|.+.|+
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2enf_A 13 YKCNECGKVFT 23 (46)
T ss_dssp CBCSSSCCBCS
T ss_pred eECCCCCcccC
Confidence 47999999985
No 296
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.01 E-value=29 Score=20.42 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=9.0
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
-+|.+|++.|+
T Consensus 13 ~~C~~C~k~f~ 23 (44)
T 2en7_A 13 YVCNECGKAFR 23 (44)
T ss_dssp SCCTTTCCCCS
T ss_pred eECCCCCCccC
Confidence 47999999884
No 297
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.66 E-value=26 Score=20.33 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=8.9
Q ss_pred CcccccCCcce
Q psy14139 25 KECKICARPFT 35 (327)
Q Consensus 25 ~eckic~rpft 35 (327)
-+|.+|++.|+
T Consensus 12 ~~C~~C~k~f~ 22 (42)
T 2epc_A 12 YLCGQCGKSFT 22 (42)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 47999999884
No 298
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.18 E-value=24 Score=24.28 Aligned_cols=33 Identities=33% Similarity=0.846 Sum_probs=23.4
Q ss_pred cCCcccccCC-cceeEEecCCCCCcccchhhhhhhhcccCccccccc
Q psy14139 23 YGKECKICAR-PFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLL 68 (327)
Q Consensus 23 ~g~eckic~r-pft~f~w~~~~~~~~kkt~ic~~ca~~kn~cq~c~l 68 (327)
.+..|..|.+ |++=+||+ |..|.. =+.||.|..
T Consensus 10 H~~~Cd~C~~~pi~G~Ryk------------C~~C~d-~DLC~~C~~ 43 (63)
T 2e5r_A 10 HPVECSYCHSESMMGFRYR------------CQQCHN-YQLCQDCFW 43 (63)
T ss_dssp SCSCCSSSCCCSSCSCEEE------------ESSCSS-CEECHHHHH
T ss_pred eCCCCcCCCCcceecceEE------------ecCCCC-chhHHHHHh
Confidence 4478999996 78878885 566654 457777754
Done!