Your job contains 1 sequence.
>psy14139
MATSKTSSTYNRQSWEDATKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLK
NVCQTCLLDLEYGLPIQVRDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALG
KASGSSEMLMKLARTTPYYKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNI
KDRYYGVNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEI
RSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGEDTAELKV
RLEPVPGLPGALPPPPKDFFNLSNPVV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14139
(327 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NMD7 - symbol:RBM22 "Pre-mRNA-splicing factor... 1267 4.0e-129 1
RGD|1305770 - symbol:Rbm22 "RNA binding motif protein 22"... 1263 1.1e-128 1
UNIPROTKB|Q5ZM16 - symbol:RBM22 "Pre-mRNA-splicing factor... 1262 1.4e-128 1
UNIPROTKB|F2Z4G3 - symbol:RBM22 "Pre-mRNA-splicing factor... 1262 1.4e-128 1
UNIPROTKB|Q9NW64 - symbol:RBM22 "Pre-mRNA-splicing factor... 1262 1.4e-128 1
UNIPROTKB|Q4R4J1 - symbol:RBM22 "Pre-mRNA-splicing factor... 1262 1.4e-128 1
UNIPROTKB|Q5RAY5 - symbol:RBM22 "Pre-mRNA-splicing factor... 1262 1.4e-128 1
MGI|MGI:1914060 - symbol:Rbm22 "RNA binding motif protein... 1262 1.4e-128 1
UNIPROTKB|Q3B7L8 - symbol:RBM22 "Pre-mRNA-splicing factor... 1260 2.2e-128 1
UNIPROTKB|E2RG35 - symbol:RBM22 "Uncharacterized protein"... 1251 2.0e-127 1
UNIPROTKB|Q7ZXB5 - symbol:rbm22 "Pre-mRNA-splicing factor... 1249 3.3e-127 1
UNIPROTKB|Q6P616 - symbol:rbm22 "Pre-mRNA-splicing factor... 1248 4.2e-127 1
UNIPROTKB|I3LKW5 - symbol:RBM22 "Uncharacterized protein"... 1234 1.3e-125 1
ZFIN|ZDB-GENE-040426-2298 - symbol:rbm22 "RNA binding mot... 1234 1.3e-125 1
FB|FBgn0037220 - symbol:CG14641 species:7227 "Drosophila ... 1138 1.9e-115 1
UNIPROTKB|F5GWK3 - symbol:RBM22 "Pre-mRNA-splicing factor... 975 6.5e-104 2
WB|WBGene00011722 - symbol:T11G6.8 species:6239 "Caenorha... 955 4.7e-96 1
TAIR|locus:2025077 - symbol:MAC5A "MOS4-associated comple... 841 5.6e-84 1
TAIR|locus:2043157 - symbol:MAC5B "MOS4-associated comple... 839 9.1e-84 1
UNIPROTKB|E5RJW4 - symbol:RBM22 "Pre-mRNA-splicing factor... 770 1.9e-76 1
TAIR|locus:2169429 - symbol:MAC5C "MOS4-associated comple... 662 5.2e-65 1
GENEDB_PFALCIPARUM|PFL2310w - symbol:PFL2310w "hypothetic... 511 5.2e-49 1
UNIPROTKB|Q8I4V2 - symbol:PFL2310w "Pre-mRNA-splicing fac... 511 5.2e-49 1
ASPGD|ASPL0000064523 - symbol:AN7145 species:162425 "Emer... 311 4.7e-46 2
DICTYBASE|DDB_G0290649 - symbol:DDB_G0290649 "RNA-binding... 466 3.1e-44 1
UNIPROTKB|Q2KH70 - symbol:MGCH7_ch7g115 "Putative unchara... 298 5.9e-44 2
POMBASE|SPCC550.02c - symbol:cwf5 "RNA-binding protein Cw... 266 2.1e-42 3
TAIR|locus:2146668 - symbol:AT5G04210 species:3702 "Arabi... 213 2.0e-17 1
CGD|CAL0004353 - symbol:orf19.5364 species:5476 "Candida ... 194 1.2e-16 2
UNIPROTKB|Q6BLU8 - symbol:CWC2 "Pre-mRNA-splicing factor ... 172 1.1e-10 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 172 2.1e-10 1
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 171 2.8e-10 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 168 6.0e-10 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 167 7.3e-10 1
CGD|CAL0001095 - symbol:orf19.674 species:5476 "Candida a... 165 9.1e-10 1
UNIPROTKB|Q59W50 - symbol:CWC2 "Pre-mRNA-splicing factor ... 165 9.1e-10 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 158 7.9e-09 1
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 155 1.6e-08 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 154 2.2e-08 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 153 2.6e-08 1
SGD|S000000269 - symbol:ECM2 "Pre-mRNA splicing factor" s... 152 2.9e-08 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 152 4.2e-08 1
UNIPROTKB|Q51TF7 - symbol:CWC2 "Pre-mRNA-splicing factor ... 150 5.9e-08 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 150 6.2e-08 1
DICTYBASE|DDB_G0291386 - symbol:DDB_G0291386 "RNA recogni... 150 8.0e-08 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 149 9.0e-08 1
UNIPROTKB|P0CR14 - symbol:CWC2 "Pre-mRNA-splicing factor ... 147 9.5e-08 1
UNIPROTKB|P0CR15 - symbol:CWC2 "Pre-mRNA-splicing factor ... 147 9.5e-08 1
UNIPROTKB|Q4WU07 - symbol:cwc2 "Pre-mRNA-splicing factor ... 144 3.1e-07 1
ASPGD|ASPL0000043504 - symbol:AN2245 species:162425 "Emer... 142 5.4e-07 1
UNIPROTKB|Q5BB35 - symbol:cwc2 "Pre-mRNA-splicing factor ... 142 5.4e-07 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 141 8.0e-07 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 140 1.0e-06 1
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 140 1.9e-06 1
DICTYBASE|DDB_G0274995 - symbol:DDB_G0274995 "Uncharacter... 141 2.8e-06 1
DICTYBASE|DDB_G0284563 - symbol:cwc2 "pre-mRNA-splicing f... 136 3.8e-06 1
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 135 4.9e-06 1
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 135 1.0e-05 1
UNIPROTKB|Q6C007 - symbol:CWC2 "Pre-mRNA-splicing factor ... 129 1.4e-05 1
POMBASE|SPAC3A12.11c - symbol:cwf2 "RNA-binding protein C... 129 1.4e-05 1
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 130 1.5e-05 1
UNIPROTKB|F6UBL3 - symbol:CELF6 "CUGBP Elav-like family m... 107 1.7e-05 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 107 1.7e-05 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 107 1.7e-05 1
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 130 2.3e-05 1
UNIPROTKB|Q6T412 - symbol:CWC2 "Pre-mRNA-splicing factor ... 124 5.9e-05 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 123 7.2e-05 1
FB|FBgn0011305 - symbol:Rsf1 "Repressor splicing factor 1... 115 9.3e-05 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 122 0.00012 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 119 0.00022 1
CGD|CAL0001768 - symbol:orf19.1876 species:5476 "Candida ... 119 0.00024 1
ZFIN|ZDB-GENE-030131-2527 - symbol:si:dkey-33c12.4 "si:dk... 120 0.00030 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 95 0.00035 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 95 0.00035 1
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 117 0.00036 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 119 0.00041 1
RGD|1309495 - symbol:Srsf9 "serine/arginine-rich splicing... 110 0.00057 1
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ... 93 0.00058 1
FB|FBgn0034572 - symbol:CG9346 species:7227 "Drosophila m... 119 0.00066 1
UNIPROTKB|E1B908 - symbol:E1B908 "Uncharacterized protein... 112 0.00067 1
UNIPROTKB|Q4PA86 - symbol:CWC2 "Pre-mRNA-splicing factor ... 101 0.00068 2
UNIPROTKB|F1NW30 - symbol:Gga.54017 "Uncharacterized prot... 120 0.00072 1
UNIPROTKB|F1NXF6 - symbol:BRUNOL6 "Uncharacterized protei... 115 0.00073 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 92 0.00074 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 116 0.00079 1
ASPGD|ASPL0000000121 - symbol:AN6331 species:162425 "Emer... 105 0.00089 2
UNIPROTKB|Q6CT50 - symbol:CWC2 "Pre-mRNA-splicing factor ... 112 0.00090 1
UNIPROTKB|F1PC86 - symbol:SCAF8 "Uncharacterized protein"... 119 0.00091 1
UNIPROTKB|F1MYK6 - symbol:LOC540182 "Uncharacterized prot... 119 0.00091 1
UNIPROTKB|Q9UPN6 - symbol:SCAF8 "Protein SCAF8" species:9... 119 0.00091 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 113 0.00095 1
FB|FBgn0064117 - symbol:CG33714 species:7227 "Drosophila ... 91 0.00096 1
UNIPROTKB|B7Z888 - symbol:SCAF8 "Protein SCAF8" species:9... 119 0.00097 1
UNIPROTKB|F1SB23 - symbol:SCAF8 "Uncharacterized protein"... 119 0.00098 1
>UNIPROTKB|F1NMD7 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0033120 "positive regulation of RNA splicing" evidence=IEA]
[GO:0033554 "cellular response to stress" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent
protein binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0090316 "positive regulation of
intracellular protein transport" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 IPI:IPI00593663 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AADN02028638 PRIDE:F1NMD7
Ensembl:ENSGALT00000007249 Uniprot:F1NMD7
Length = 420
Score = 1267 (451.1 bits), Expect = 4.0e-129, P = 4.0e-129
Identities = 225/290 (77%), Positives = 256/290 (88%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TKEKYGKECKICARPFTVFRWCPG RMRFKKTEVCQTC++LKNVCQTCLLDLEYGLPIQV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 79 RDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPY 138
RD L +KD++PKSDVNKEYY QNM+ EI D T P GALGKA+ +S+ML+KLARTTPY
Sbjct: 97 RDAGLSLKDEMPKSDVNKEYYTQNMEREIANSDGTRPVGALGKATSTSDMLLKLARTTPY 156
Query: 139 YKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMAR 198
YKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDPVA+KL+ R
Sbjct: 157 YKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKR 216
Query: 199 ASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
ASTMP+LDPP+DKTITTLYVG LGD +TE DLR+HFYQFGEIR++T++ +QQCAFIQ+ +
Sbjct: 217 ASTMPRLDPPDDKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFAT 276
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRG-----EDTAELKVRLE 303
R AAE A E SFNK+I+ GRRLN+KWGR+QA RG E T E ++LE
Sbjct: 277 RQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKDKEGTTESGIKLE 326
>RGD|1305770 [details] [associations]
symbol:Rbm22 "RNA binding motif protein 22" species:10116
"Rattus norvegicus" [GO:0000060 "protein import into nucleus,
translocation" evidence=IEA;ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017069 "snRNA binding"
evidence=ISO;ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISO;ISS] [GO:0033554 "cellular response to stress"
evidence=ISO;ISS] [GO:0036002 "pre-mRNA binding" evidence=ISO;ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO;ISS]
[GO:0048306 "calcium-dependent protein binding" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0090316 "positive regulation of intracellular protein
transport" evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
RGD:1305770 GO:GO:0005634 GO:GO:0005737 GO:GO:0033554 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000060
GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 GO:GO:0005487 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:BC097991 IPI:IPI00194439
RefSeq:NP_001020847.1 UniGene:Rn.105130 ProteinModelPortal:Q4V7D7
SMR:Q4V7D7 STRING:Q4V7D7 PRIDE:Q4V7D7 Ensembl:ENSRNOT00000026087
GeneID:307410 KEGG:rno:307410 UCSC:RGD:1305770 InParanoid:Q4V7D7
NextBio:657353 Genevestigator:Q4V7D7 GermOnline:ENSRNOG00000019235
Uniprot:Q4V7D7
Length = 420
Score = 1263 (449.7 bits), Expect = 1.1e-128, P = 1.1e-128
Identities = 222/276 (80%), Positives = 249/276 (90%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TKEKYGKECKICARPFTVFRWCPG RMRFKKTEVCQTC++LKNVCQTCLLDLEYGLPIQV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 79 RDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPY 138
RD L KDD+PKSDVNKEYY QNM+ EI D T P G LGKA+ +S+ML+KLARTTPY
Sbjct: 97 RDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPY 156
Query: 139 YKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMAR 198
YKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDPVA+KL+ R
Sbjct: 157 YKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKR 216
Query: 199 ASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
ASTMP+LDPPEDKTITTLYVG LGD +TE DLR+HFYQFGEIR+VT++ +QQCAFIQ+ +
Sbjct: 217 ASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTVTVVQRQQCAFIQFAT 276
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGED 294
R AAE A E SFNK+I+ GRRLN+KWGR+QA RG++
Sbjct: 277 RQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKE 312
>UNIPROTKB|Q5ZM16 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006913 "nucleocytoplasmic
transport" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0090316 "positive regulation of intracellular
protein transport" evidence=ISS] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=ISS] [GO:0017069 "snRNA binding"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316 GO:GO:0017069
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872 GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 GO:GO:0005487 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AJ719568 IPI:IPI00593663
RefSeq:NP_001006151.1 UniGene:Gga.4751 HSSP:Q6PHZ5
ProteinModelPortal:Q5ZM16 SMR:Q5ZM16 STRING:Q5ZM16 GeneID:416270
KEGG:gga:416270 InParanoid:Q5ZM16 NextBio:20819755 Uniprot:Q5ZM16
Length = 420
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 224/290 (77%), Positives = 256/290 (88%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TKEKYGKECKICARPFTVFRWCPG RMRFKKTEVCQTC++LKNVCQTCLLDLEYGLPIQV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 79 RDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPY 138
RD L +KD++PKSDVNKEYY QNM+ EI D T P GALGKA+ +S+ML+KLARTTPY
Sbjct: 97 RDAGLSLKDEMPKSDVNKEYYTQNMEREIANSDGTRPVGALGKATSTSDMLLKLARTTPY 156
Query: 139 YKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMAR 198
YKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDDPLADQ+IKDRYYG+NDPVA+KL+ R
Sbjct: 157 YKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQDIKDRYYGINDPVADKLLKR 216
Query: 199 ASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
ASTMP+LDPP+DKTITTLYVG LGD +TE DLR+HFYQFGEIR++T++ +QQCAFIQ+ +
Sbjct: 217 ASTMPRLDPPDDKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFAT 276
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRG-----EDTAELKVRLE 303
R AAE A E SFNK+I+ GRRLN+KWGR+QA RG E T E ++LE
Sbjct: 277 RQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKDKEGTTESGIKLE 326
>UNIPROTKB|F2Z4G3 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9913
"Bos taurus" [GO:0090316 "positive regulation of intracellular
protein transport" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent protein
binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=IEA] [GO:0000060 "protein import
into nucleus, translocation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005737 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
UniGene:Bt.28600 GeneTree:ENSGT00390000002792 EMBL:DAAA02020630
IPI:IPI00716918 ProteinModelPortal:F2Z4G3 SMR:F2Z4G3 PRIDE:F2Z4G3
Ensembl:ENSBTAT00000042873 NextBio:20925883 Uniprot:F2Z4G3
Length = 420
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 221/276 (80%), Positives = 249/276 (90%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TKEKYGKECKICARPFTVFRWCPG RMRFKKTEVCQTC++LKNVCQTCLLDLEYGLPIQV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 79 RDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPY 138
RD L KDD+PKSDVNKEYY QNM+ EI D T P G LGKA+ +S+ML+KLARTTPY
Sbjct: 97 RDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPY 156
Query: 139 YKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMAR 198
YKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDPVA+KL+ R
Sbjct: 157 YKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKR 216
Query: 199 ASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
ASTMP+LDPPEDKTITTLYVG LGD +TE DLR+HFYQFGEIR++T++ +QQCAFIQ+ +
Sbjct: 217 ASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFAT 276
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGED 294
R AAE A E SFNK+I+ GRRLN+KWGR+QA RG++
Sbjct: 277 RQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKE 312
>UNIPROTKB|Q9NW64 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000060 "protein import into nucleus,
translocation" evidence=IDA] [GO:0048306 "calcium-dependent protein
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IDA] [GO:0090316 "positive
regulation of intracellular protein transport" evidence=IDA]
[GO:0033120 "positive regulation of RNA splicing" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IDA]
[GO:0017069 "snRNA binding" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0005737 EMBL:CH471062 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 EMBL:AC008453
GO:GO:0005487 CTD:55696 HOVERGEN:HBG083475 OrthoDB:EOG40S0FW
EMBL:AL136933 EMBL:AK001152 EMBL:AK297019 EMBL:BC003402 EMBL:U39402
IPI:IPI00019046 IPI:IPI00909290 RefSeq:NP_060517.1
UniGene:Hs.713564 PDB:2YTC PDBsum:2YTC ProteinModelPortal:Q9NW64
SMR:Q9NW64 IntAct:Q9NW64 STRING:Q9NW64 PhosphoSite:Q9NW64
DMDM:74762758 PaxDb:Q9NW64 PRIDE:Q9NW64 DNASU:55696
Ensembl:ENST00000199814 Ensembl:ENST00000447771 GeneID:55696
KEGG:hsa:55696 UCSC:uc003lst.3 GeneCards:GC05M150050
HGNC:HGNC:25503 HPA:HPA001634 MIM:612430 neXtProt:NX_Q9NW64
PharmGKB:PA134982384 InParanoid:Q9NW64 EvolutionaryTrace:Q9NW64
GenomeRNAi:55696 NextBio:60521 ArrayExpress:Q9NW64 Bgee:Q9NW64
CleanEx:HS_RBM22 Genevestigator:Q9NW64 GermOnline:ENSG00000086589
Uniprot:Q9NW64
Length = 420
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 221/276 (80%), Positives = 249/276 (90%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TKEKYGKECKICARPFTVFRWCPG RMRFKKTEVCQTC++LKNVCQTCLLDLEYGLPIQV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 79 RDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPY 138
RD L KDD+PKSDVNKEYY QNM+ EI D T P G LGKA+ +S+ML+KLARTTPY
Sbjct: 97 RDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPY 156
Query: 139 YKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMAR 198
YKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDPVA+KL+ R
Sbjct: 157 YKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKR 216
Query: 199 ASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
ASTMP+LDPPEDKTITTLYVG LGD +TE DLR+HFYQFGEIR++T++ +QQCAFIQ+ +
Sbjct: 217 ASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFAT 276
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGED 294
R AAE A E SFNK+I+ GRRLN+KWGR+QA RG++
Sbjct: 277 RQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKE 312
>UNIPROTKB|Q4R4J1 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9541
"Macaca fascicularis" [GO:0005487 "nucleocytoplasmic transporter
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006913
"nucleocytoplasmic transport" evidence=ISS] [GO:0017069 "snRNA
binding" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0090316 "positive regulation of intracellular protein
transport" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316 GO:GO:0017069
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
HOVERGEN:HBG083475 HSSP:Q6PHZ5 EMBL:AB169903
ProteinModelPortal:Q4R4J1 SMR:Q4R4J1 PRIDE:Q4R4J1 Uniprot:Q4R4J1
Length = 420
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 221/276 (80%), Positives = 249/276 (90%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TKEKYGKECKICARPFTVFRWCPG RMRFKKTEVCQTC++LKNVCQTCLLDLEYGLPIQV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 79 RDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPY 138
RD L KDD+PKSDVNKEYY QNM+ EI D T P G LGKA+ +S+ML+KLARTTPY
Sbjct: 97 RDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPY 156
Query: 139 YKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMAR 198
YKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDPVA+KL+ R
Sbjct: 157 YKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKR 216
Query: 199 ASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
ASTMP+LDPPEDKTITTLYVG LGD +TE DLR+HFYQFGEIR++T++ +QQCAFIQ+ +
Sbjct: 217 ASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFAT 276
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGED 294
R AAE A E SFNK+I+ GRRLN+KWGR+QA RG++
Sbjct: 277 RQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKE 312
>UNIPROTKB|Q5RAY5 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9601
"Pongo abelii" [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS] [GO:0033120
"positive regulation of RNA splicing" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0090316 "positive regulation of
intracellular protein transport" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0033554 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316
GO:GO:0017069 KO:K12872 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 CTD:55696 HOVERGEN:HBG083475 HSSP:Q6PHZ5
EMBL:CR858876 RefSeq:NP_001125624.1 UniGene:Pab.12645
ProteinModelPortal:Q5RAY5 SMR:Q5RAY5 GeneID:100172542
KEGG:pon:100172542 InParanoid:Q5RAY5 Uniprot:Q5RAY5
Length = 420
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 221/276 (80%), Positives = 249/276 (90%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TKEKYGKECKICARPFTVFRWCPG RMRFKKTEVCQTC++LKNVCQTCLLDLEYGLPIQV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 79 RDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPY 138
RD L KDD+PKSDVNKEYY QNM+ EI D T P G LGKA+ +S+ML+KLARTTPY
Sbjct: 97 RDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPY 156
Query: 139 YKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMAR 198
YKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDPVA+KL+ R
Sbjct: 157 YKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKR 216
Query: 199 ASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
ASTMP+LDPPEDKTITTLYVG LGD +TE DLR+HFYQFGEIR++T++ +QQCAFIQ+ +
Sbjct: 217 ASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFAT 276
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGED 294
R AAE A E SFNK+I+ GRRLN+KWGR+QA RG++
Sbjct: 277 RQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKE 312
>MGI|MGI:1914060 [details] [associations]
symbol:Rbm22 "RNA binding motif protein 22" species:10090
"Mus musculus" [GO:0000060 "protein import into nucleus,
translocation" evidence=ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=ISO] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISO] [GO:0033554 "cellular response to stress"
evidence=ISO] [GO:0036002 "pre-mRNA binding" evidence=ISO]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048306
"calcium-dependent protein binding" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0090316 "positive
regulation of intracellular protein transport" evidence=ISO]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 MGI:MGI:1914060 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
OMA:ILADKAC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
CTD:55696 HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:AK018452 EMBL:AK045116
EMBL:AK150271 EMBL:AK151758 EMBL:AK152252 EMBL:AK166600
EMBL:AK167509 EMBL:AK168919 EMBL:BC080205 IPI:IPI00221951
RefSeq:NP_080052.1 UniGene:Mm.275106 ProteinModelPortal:Q8BHS3
SMR:Q8BHS3 STRING:Q8BHS3 PhosphoSite:Q8BHS3 PaxDb:Q8BHS3
PRIDE:Q8BHS3 Ensembl:ENSMUST00000025506 GeneID:66810 KEGG:mmu:66810
UCSC:uc008fal.1 InParanoid:Q8BHS3 ChiTaRS:RBM22 NextBio:322703
Bgee:Q8BHS3 CleanEx:MM_RBM22 Genevestigator:Q8BHS3
GermOnline:ENSMUSG00000024604 Uniprot:Q8BHS3
Length = 420
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 221/276 (80%), Positives = 249/276 (90%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TKEKYGKECKICARPFTVFRWCPG RMRFKKTEVCQTC++LKNVCQTCLLDLEYGLPIQV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 79 RDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPY 138
RD L KDD+PKSDVNKEYY QNM+ EI D T P G LGKA+ +S+ML+KLARTTPY
Sbjct: 97 RDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPY 156
Query: 139 YKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMAR 198
YKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDPVA+KL+ R
Sbjct: 157 YKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKR 216
Query: 199 ASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
ASTMP+LDPPEDKTITTLYVG LGD +TE DLR+HFYQFGEIR++T++ +QQCAFIQ+ +
Sbjct: 217 ASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFAT 276
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGED 294
R AAE A E SFNK+I+ GRRLN+KWGR+QA RG++
Sbjct: 277 RQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKE 312
>UNIPROTKB|Q3B7L8 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9913
"Bos taurus" [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=ISS] [GO:0090316
"positive regulation of intracellular protein transport"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0033554 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
EMBL:BC107551 IPI:IPI00709529 RefSeq:NP_001032907.1
UniGene:Bt.28600 ProteinModelPortal:Q3B7L8 SMR:Q3B7L8 PRIDE:Q3B7L8
GeneID:512330 KEGG:bta:512330 CTD:55696 HOVERGEN:HBG083475
InParanoid:Q3B7L8 OrthoDB:EOG40S0FW NextBio:20870344 Uniprot:Q3B7L8
Length = 420
Score = 1260 (448.6 bits), Expect = 2.2e-128, P = 2.2e-128
Identities = 221/276 (80%), Positives = 248/276 (89%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TKEKYGKECKICARPFTVFRWCPG RMRFKKTEVCQTC++LKNVCQTCLLDLEYGLPIQV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 79 RDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPY 138
RD L KDD+PKSDVNKEYY QNM+ EI D T P G LGKA+ +S+ML+KLARTTPY
Sbjct: 97 RDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPY 156
Query: 139 YKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMAR 198
YKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDPVA+KL+ R
Sbjct: 157 YKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKR 216
Query: 199 ASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
ASTMP+LDPPEDKTITTLYVG LGD +TE DLR+HFYQFGEIR++T++ +QQCAFIQ+ +
Sbjct: 217 ASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFAT 276
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGED 294
R AAE A E SFNK I+ GRRLN+KWGR+QA RG++
Sbjct: 277 RQAAEVAAEKSFNKFIVNGRRLNVKWGRSQAARGKE 312
>UNIPROTKB|E2RG35 [details] [associations]
symbol:RBM22 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0090316 "positive regulation of intracellular
protein transport" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent protein
binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=IEA] [GO:0000060 "protein import
into nucleus, translocation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005737 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
GeneTree:ENSGT00390000002792 EMBL:AAEX03003093
ProteinModelPortal:E2RG35 Ensembl:ENSCAFT00000028740 Uniprot:E2RG35
Length = 422
Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
Identities = 221/278 (79%), Positives = 249/278 (89%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGL--PI 76
TKEKYGKECKICARPFTVFRWCPG RMRFKKTEVCQTC++LKNVCQTCLLDLEYGL PI
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLGLPI 96
Query: 77 QVRDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTT 136
QVRD L KDD+PKSDVNKEYY QNM+ EI D T P G LGKA+ +S+ML+KLARTT
Sbjct: 97 QVRDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTT 156
Query: 137 PYYKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLM 196
PYYKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDPVA+KL+
Sbjct: 157 PYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLL 216
Query: 197 ARASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQY 256
RASTMP+LDPPEDKTITTLYVG LGD +TE DLR+HFYQFGEIR++T++ +QQCAFIQ+
Sbjct: 217 KRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQF 276
Query: 257 TSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGED 294
+R AAE A E SFNK+I+ GRRLN+KWGR+QA RG++
Sbjct: 277 ATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKE 314
>UNIPROTKB|Q7ZXB5 [details] [associations]
symbol:rbm22 "Pre-mRNA-splicing factor RBM22" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS]
[GO:0033120 "positive regulation of RNA splicing" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0017069
KO:K12872 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 CTD:55696
HOVERGEN:HBG083475 HSSP:Q6PHZ5 EMBL:BC045067 RefSeq:NP_001080776.1
UniGene:Xl.4959 ProteinModelPortal:Q7ZXB5 SMR:Q7ZXB5 GeneID:380469
KEGG:xla:380469 Xenbase:XB-GENE-971204 Uniprot:Q7ZXB5
Length = 417
Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
Identities = 216/276 (78%), Positives = 252/276 (91%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TKEKYGKECKICARPFTVFRWCPG RMRFKKTEVCQTC++LKNVCQTCLLDLEYGLPIQV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 79 RDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPY 138
RDT + +KD++P+SDVNKEYY QNM+ EI D T P GALGKA+ SS+ML+KLARTTPY
Sbjct: 97 RDTGVSLKDEMPRSDVNKEYYTQNMEREIANSDGTRPVGALGKATSSSDMLLKLARTTPY 156
Query: 139 YKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMAR 198
YKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDDPLADQNIKDR+YG+NDPVA+KL+ R
Sbjct: 157 YKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRFYGINDPVADKLLKR 216
Query: 199 ASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
ASTMP+LDPPEDK+ITTLYVG LGD ++E +LR+HFYQFGEIR++T++ +QQCAFIQ+ +
Sbjct: 217 ASTMPRLDPPEDKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFAT 276
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGED 294
R +AE A E SFNK+I+ GRRLN+KWGR+QA RG++
Sbjct: 277 RQSAETAAEKSFNKLIVNGRRLNVKWGRSQAARGKE 312
>UNIPROTKB|Q6P616 [details] [associations]
symbol:rbm22 "Pre-mRNA-splicing factor RBM22" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0017069 "snRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0007275 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
OMA:RNRAHIC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:CR761977 EMBL:BC062518
RefSeq:NP_989108.1 UniGene:Str.5987 ProteinModelPortal:Q6P616
SMR:Q6P616 STRING:Q6P616 Ensembl:ENSXETT00000044114 GeneID:394713
KEGG:xtr:394713 Xenbase:XB-GENE-971198 InParanoid:Q6P616
Bgee:Q6P616 Uniprot:Q6P616
Length = 417
Score = 1248 (444.4 bits), Expect = 4.2e-127, P = 4.2e-127
Identities = 217/276 (78%), Positives = 250/276 (90%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TKEKYGKECKICARPFTVFRWCPG RMRFKKTEVCQTC++LKNVCQTCLLDLEYGLPIQV
Sbjct: 37 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 96
Query: 79 RDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPY 138
RD +KD++P+SDVNKEYY QNM+ EI D T P GALGKA+ SS+ML+KLARTTPY
Sbjct: 97 RDAGASLKDEMPRSDVNKEYYTQNMEREIANSDGTRPVGALGKATSSSDMLLKLARTTPY 156
Query: 139 YKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMAR 198
YKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDPVA+KL+ R
Sbjct: 157 YKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKR 216
Query: 199 ASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
ASTMP+LDPPEDK+ITTLYVG LGD ++E +LR+HFYQFGEIR++T++ +QQCAFIQ+ +
Sbjct: 217 ASTMPRLDPPEDKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFAT 276
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGED 294
R AAE A E SFNK+I+ GRRLN+KWGR+QA RG++
Sbjct: 277 RQAAEMAAEKSFNKLIVNGRRLNVKWGRSQAARGKE 312
>UNIPROTKB|I3LKW5 [details] [associations]
symbol:RBM22 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090316 "positive regulation of intracellular protein
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0036002 "pre-mRNA binding" evidence=IEA]
[GO:0033554 "cellular response to stress" evidence=IEA] [GO:0033120
"positive regulation of RNA splicing" evidence=IEA] [GO:0017069
"snRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005487 "nucleocytoplasmic transporter activity" evidence=IEA]
[GO:0000060 "protein import into nucleus, translocation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 OMA:ILADKAC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 GeneTree:ENSGT00390000002792
Ensembl:ENSSSCT00000022932 Uniprot:I3LKW5
Length = 402
Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
Identities = 218/276 (78%), Positives = 246/276 (89%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TKEKYGKECKICARPFTVFRWCPG RMRFKKTEVCQTC++LKNVCQTCLLDLEYGLPIQV
Sbjct: 19 TKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQV 78
Query: 79 RDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPY 138
RD L KDD+PKSDVNKEYY QNM+ EI D T P G LGKA+ +S+ML+KLARTTPY
Sbjct: 79 RDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPY 138
Query: 139 YKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMAR 198
YKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDPVA+KL+ R
Sbjct: 139 YKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKR 198
Query: 199 ASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
ASTMP+LDPPEDKTITTLYVG LG E++L +HFYQFGEIR+VT++ +QQCAFIQ+ +
Sbjct: 199 ASTMPRLDPPEDKTITTLYVGGLGRDGVEKNLPNHFYQFGEIRTVTVVQRQQCAFIQFAT 258
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGED 294
R AAE A E SFNK+I+ GRRLN+KWGR+QA RG++
Sbjct: 259 RQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKE 294
>ZFIN|ZDB-GENE-040426-2298 [details] [associations]
symbol:rbm22 "RNA binding motif protein 22"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017069
"snRNA binding" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 ZFIN:ZDB-GENE-040426-2298 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0009790 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 HSSP:Q9H0Z9 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AY648794 EMBL:BC065892
IPI:IPI00487656 RefSeq:NP_998379.1 RefSeq:XP_003200934.1
UniGene:Dr.32898 ProteinModelPortal:Q6NZZ9 SMR:Q6NZZ9 STRING:Q6NZZ9
PRIDE:Q6NZZ9 Ensembl:ENSDART00000003983 Ensembl:ENSDART00000122126
GeneID:100536641 GeneID:406495 KEGG:dre:100536641 KEGG:dre:406495
GeneTree:ENSGT00390000002792 InParanoid:Q6NZZ9 NextBio:20818079
Bgee:Q6NZZ9 Uniprot:Q6NZZ9
Length = 425
Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
Identities = 217/289 (75%), Positives = 252/289 (87%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TKEK+GKECKICARPFTVFRWCPG RMRFKKTEVCQTC+++KNVCQTCLLDLEYGLPIQV
Sbjct: 37 TKEKFGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQV 96
Query: 79 RDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPY 138
RDT L +KD++P+SDVNKEYY QNM+ EI D T P G LGKA SS+ML+KLARTTPY
Sbjct: 97 RDTGLSVKDEVPRSDVNKEYYTQNMEREIANSDGTRPVGLLGKAPSSSDMLLKLARTTPY 156
Query: 139 YKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMAR 198
YKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDDPLADQNIKDRYYG+NDPVA KL+ R
Sbjct: 157 YKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVANKLLMR 216
Query: 199 ASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
ASTMP+LD P+DK+ITTLY+G LG+ +T+ +LR+HFYQFGEIR++TI+ +QQCAFIQ+ +
Sbjct: 217 ASTMPRLDVPDDKSITTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFAT 276
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRG----EDTAELKVRLE 303
R AAE A E SFNK+I+ GRRLN+KWGR+QA RG + E +RLE
Sbjct: 277 RQAAETAAEKSFNKLIINGRRLNVKWGRSQAARGKGEKDGVTESGIRLE 325
>FB|FBgn0037220 [details] [associations]
symbol:CG14641 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IC] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 eggNOG:NOG277760
KO:K12872 GO:GO:0000381 HSSP:P33240 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AY061516 RefSeq:NP_649440.3 UniGene:Dm.3575
SMR:Q95RB1 IntAct:Q95RB1 MINT:MINT-289131 STRING:Q95RB1
EnsemblMetazoa:FBtr0078985 GeneID:40529 KEGG:dme:Dmel_CG14641
UCSC:CG14641-RA FlyBase:FBgn0037220 InParanoid:Q95RB1
OrthoDB:EOG4N5TC7 GenomeRNAi:40529 NextBio:819204 Uniprot:Q95RB1
Length = 418
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 195/273 (71%), Positives = 239/273 (87%)
Query: 20 KEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQVR 79
KE++GKECKIC RPFT+FRWCPGARMRFKKTE+CQTCARLKNVCQTCLLDLEYGLPIQVR
Sbjct: 38 KERFGKECKICTRPFTIFRWCPGARMRFKKTEICQTCARLKNVCQTCLLDLEYGLPIQVR 97
Query: 80 DTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPYY 139
D ALK+ D++P+SDVNKEYYIQN+D ++ D T AGA+G++ ++EML KLART PYY
Sbjct: 98 DAALKVADNMPQSDVNKEYYIQNIDAQLQDGDGTEAAGAVGRSLAANEMLSKLARTAPYY 157
Query: 140 KRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMARA 199
KRNRPHICSFWVKGEC+RGEECPYRH+KP +PDDPL +QNIKDRYYG NDPVAEK+M RA
Sbjct: 158 KRNRPHICSFWVKGECKRGEECPYRHDKPNEPDDPLCEQNIKDRYYGRNDPVAEKIMKRA 217
Query: 200 STMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSR 259
+++P L+PPED+ ITTLYVGNL +++TE +LRD FYQFGEIRS+ ++ +QQCAF+QYT R
Sbjct: 218 ASLPTLEPPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIALVPRQQCAFVQYTKR 277
Query: 260 PAAEAAVEHSFNKVILGGRRLNIKWGRAQANRG 292
AAE A E +FNK+++ GR+++IKW +QA +G
Sbjct: 278 NAAELAAERTFNKLVIQGRKVSIKWAHSQAKQG 310
>UNIPROTKB|F5GWK3 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC008453
IPI:IPI00909290 HGNC:HGNC:25503 ProteinModelPortal:F5GWK3
SMR:F5GWK3 Ensembl:ENST00000540000 ArrayExpress:F5GWK3 Bgee:F5GWK3
Uniprot:F5GWK3
Length = 371
Score = 975 (348.3 bits), Expect = 6.5e-104, Sum P(2) = 6.5e-104
Identities = 176/241 (73%), Positives = 204/241 (84%)
Query: 62 VCQTCLLDLEY--------GLPIQVRDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDST 113
+CQTCL + Y GLPIQVRD L KDD+PKSDVNKEYY QNM+ EI D T
Sbjct: 23 LCQTCLGENPYIRMEREKSGLPIQVRDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGT 82
Query: 114 TPAGALGKASGSSEMLMKLARTTPYYKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDD 173
P G LGKA+ +S+ML+KLARTTPYYKRNRPHICSFWVKGEC+RGEECPYRHEKPTDPDD
Sbjct: 83 RPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDD 142
Query: 174 PLADQNIKDRYYGVNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDH 233
PLADQNIKDRYYG+NDPVA+KL+ RASTMP+LDPPEDKTITTLYVG LGD +TE DLR+H
Sbjct: 143 PLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNH 202
Query: 234 FYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGE 293
FYQFGEIR++T++ +QQCAFIQ+ +R AAE A E SFNK+I+ GRRLN+KWGR+QA RG+
Sbjct: 203 FYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGK 262
Query: 294 D 294
+
Sbjct: 263 E 263
Score = 74 (31.1 bits), Expect = 6.5e-104, Sum P(2) = 6.5e-104
Identities = 14/18 (77%), Positives = 16/18 (88%)
Query: 1 MATSKTSSTYNRQSWEDA 18
MATS S+TYNRQ+WEDA
Sbjct: 1 MATSLGSNTYNRQNWEDA 18
>WB|WBGene00011722 [details] [associations]
symbol:T11G6.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0042127 "regulation of
cell proliferation" evidence=IMP] [GO:0040020 "regulation of
meiosis" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 GO:GO:0046872 GO:GO:0018996
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
GeneTree:ENSGT00390000002792 EMBL:Z69384 PIR:T24851
RefSeq:NP_502014.2 ProteinModelPortal:Q22412 SMR:Q22412
STRING:Q22412 PaxDb:Q22412 EnsemblMetazoa:T11G6.8.1
EnsemblMetazoa:T11G6.8.2 GeneID:177979 KEGG:cel:CELE_T11G6.8
UCSC:T11G6.8.1 CTD:177979 WormBase:T11G6.8 InParanoid:Q22412
OMA:CAFVQYT NextBio:899214 Uniprot:Q22412
Length = 408
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 166/283 (58%), Positives = 215/283 (75%)
Query: 20 KEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQVR 79
K+KYG+ECKIC RPFT FRW PG R+K TE+CQTCA++KNVCQTC+ DLEYGLP+QVR
Sbjct: 39 KDKYGRECKICERPFTTFRWQPGKGARYKNTELCQTCAKVKNVCQTCMFDLEYGLPVQVR 98
Query: 80 DTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKA--SGSSEMLMKLARTTP 137
D L+I D+IPK N+++++QN++ +G+ D T P + + + L ++ RT P
Sbjct: 99 DHELQIADNIPKQGANRDFFLQNVERTLGQGDGTQPIAQIANNMDQAAHDRLRRMGRTQP 158
Query: 138 YYKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMA 197
YYKRN PHICSF+VKGEC+RGEECPYRHEKPTDPDDPL+ QNI+DRYYG NDPVAEK++
Sbjct: 159 YYKRNAPHICSFFVKGECKRGEECPYRHEKPTDPDDPLSRQNIRDRYYGTNDPVAEKILN 218
Query: 198 RASTMPKLDPPEDKTITTLYVGNLG----DKLTEQDLRDHFYQFGEIRSVTILSKQQCAF 253
RA+ P L PP D TITTLY+GNLG ++TE+DL D FYQ+G+IR + +L+++ CAF
Sbjct: 219 RAAAAPTLSPPADTTITTLYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKGCAF 278
Query: 254 IQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGEDTA 296
I++T+R AAE A E SFNK + G+RL I+WG QA R D +
Sbjct: 279 IEFTTREAAERAAERSFNKTFIKGKRLTIRWGEPQAKRAADNS 321
>TAIR|locus:2025077 [details] [associations]
symbol:MAC5A "MOS4-associated complex subunit 5A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IGI] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0042742 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
ProtClustDB:CLSN2913258 EMBL:AC022464 EMBL:AY054519 EMBL:AY114632
IPI:IPI00518267 PIR:F86208 RefSeq:NP_563788.1 UniGene:At.25418
HSSP:P18615 ProteinModelPortal:Q9LNV5 SMR:Q9LNV5 IntAct:Q9LNV5
STRING:Q9LNV5 PaxDb:Q9LNV5 PRIDE:Q9LNV5 EnsemblPlants:AT1G07360.1
GeneID:837248 KEGG:ath:AT1G07360 TAIR:At1g07360 InParanoid:Q9LNV5
OMA:ILADKAC PhylomeDB:Q9LNV5 Genevestigator:Q9LNV5 Uniprot:Q9LNV5
Length = 481
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 155/276 (56%), Positives = 199/276 (72%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TK Y KECKIC RPFTVFRW PG R+KKTE+CQTC +LKNVCQ CLLDLEYGLP+QV
Sbjct: 36 TKANYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQV 95
Query: 79 RDTALKIK--DDIPKSDVNKEYYIQNMDHEI-GKIDSTTPAGALGKASGSSEMLMKLART 135
RDTAL I D IPKSDVN+EY+ + D + +D + + GK ++ ++KL RT
Sbjct: 96 RDTALNISTHDSIPKSDVNREYFAEEHDRKARAGLDYES---SFGKMR-PNDTILKLQRT 151
Query: 136 TPYYKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKL 195
TPYYKRNR H+CSF+++GEC RG ECPYRHE P + L+ QNIKDRYYGVNDPVA KL
Sbjct: 152 TPYYKRNRAHVCSFFIRGECTRGAECPYRHEMPETGE--LSQQNIKDRYYGVNDPVAMKL 209
Query: 196 MARASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQ 255
+ +A M L+ P+D++I TLYVG L ++ EQD+RD FY GEI S+ IL+ + CAF+
Sbjct: 210 LGKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVT 269
Query: 256 YTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291
YTSR AE A + N++++ G+RL + WGR + ++
Sbjct: 270 YTSREGAEKAAQELSNRLVINGQRLKLTWGRPKPDQ 305
>TAIR|locus:2043157 [details] [associations]
symbol:MAC5B "MOS4-associated complex subunit 5B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC004561 EMBL:AF428354
EMBL:BT002621 IPI:IPI00535091 PIR:A84698 RefSeq:NP_180518.1
UniGene:At.12692 ProteinModelPortal:Q9ZW36 SMR:Q9ZW36 PRIDE:Q9ZW36
EnsemblPlants:AT2G29580.1 GeneID:817507 KEGG:ath:AT2G29580
TAIR:At2g29580 eggNOG:NOG277760 HOGENOM:HOG000171086
InParanoid:Q9ZW36 KO:K12872 OMA:RNRAHIC PhylomeDB:Q9ZW36
ProtClustDB:CLSN2913258 Genevestigator:Q9ZW36 Uniprot:Q9ZW36
Length = 483
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 158/273 (57%), Positives = 197/273 (72%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
TK Y KECKIC RPFTVFRW PG R+KKTEVCQTC +LKNVCQ CLLDLEYGLP+QV
Sbjct: 36 TKANYDKECKICTRPFTVFRWRPGRDARYKKTEVCQTCCKLKNVCQVCLLDLEYGLPVQV 95
Query: 79 RDTALKIK--DDIPKSDVNKEYYIQNMDHEI-GKIDSTTPAGALGKASGSSEMLMKLART 135
RDTAL I D IPKSDVN+E++ + D + +D + + GK + + M L RT
Sbjct: 96 RDTALNISTHDSIPKSDVNREFFAEEHDRKTRAGLDYES---SFGKIRPNDTIRM-LQRT 151
Query: 136 TPYYKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKL 195
TPYYKRNR HICSF+++GEC RG+ECPYRHE P + L+ QNIKDRYYGVNDPVA KL
Sbjct: 152 TPYYKRNRAHICSFFIRGECTRGDECPYRHEMPETGE--LSQQNIKDRYYGVNDPVALKL 209
Query: 196 MARASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQ 255
+ +A M L+ PED++I TLYVG L ++ EQD+RD FY GEI S+ IL+++ CAF+
Sbjct: 210 LGKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVT 269
Query: 256 YTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288
YT+R AE A E N++++ G+RL + WGR Q
Sbjct: 270 YTTREGAEKAAEELSNRLVVNGQRLKLTWGRPQ 302
>UNIPROTKB|E5RJW4 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 GO:GO:0005634
GO:GO:0008270 GO:GO:0003676 EMBL:AC008453 HGNC:HGNC:25503
IPI:IPI00979459 ProteinModelPortal:E5RJW4 SMR:E5RJW4
Ensembl:ENST00000518917 ArrayExpress:E5RJW4 Bgee:E5RJW4
Uniprot:E5RJW4
Length = 179
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 140/179 (78%), Positives = 151/179 (84%)
Query: 1 MATSKTSSTYNRQSWEDAT-----------KEKYGKECKICARPFTVFRWCPGARMRFKK 49
MATS S+TYNRQ+WEDAT KEKYGKECKICARPFTVFRWCPG RMRFKK
Sbjct: 1 MATSLGSNTYNRQNWEDATCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKK 60
Query: 50 TEVCQTCARLKNVCQTCLLDLEYGLPIQVRDTALKIKDDIPKSDVNKEYYIQNMDHEIGK 109
TEVCQTC++LKNVCQTCLLDLEYGLPIQVRD L KDD+PKSDVNKEYY QNM+ EI
Sbjct: 61 TEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQNMEREISN 120
Query: 110 IDSTTPAGALGKASGSSEMLMKLARTTPYYKRNRPHICSFWVKGECRRGEECPYRHEKP 168
D T P G LGKA+ +S+ML+KLARTTPYYKRNRPHICSFWVKGEC+RGEECPYRHEKP
Sbjct: 121 SDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKP 179
>TAIR|locus:2169429 [details] [associations]
symbol:MAC5C "MOS4-associated complex subunit 5C"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AB010697 eggNOG:NOG277760 HOGENOM:HOG000171086
KO:K12872 EMBL:DQ446923 EMBL:DQ653266 IPI:IPI00544129
RefSeq:NP_196323.1 UniGene:At.54760 ProteinModelPortal:Q9FL40
SMR:Q9FL40 EnsemblPlants:AT5G07060.1 GeneID:830597
KEGG:ath:AT5G07060 TAIR:At5g07060 InParanoid:Q9FL40 OMA:PITCESC
PhylomeDB:Q9FL40 ArrayExpress:Q9FL40 Genevestigator:Q9FL40
Uniprot:Q9FL40
Length = 363
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 124/254 (48%), Positives = 172/254 (67%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
T+ Y KECKIC+RPFT FRW PG RFKKTE+CQTC++LKNVCQ CLLDL +GLP+QV
Sbjct: 33 TRADYDKECKICSRPFTAFRWRPGRNARFKKTEICQTCSKLKNVCQVCLLDLGFGLPVQV 92
Query: 79 RDTALKIKD--DIPKSDVNKEYYIQNMDHEI-GKIDSTTPAGALGKASGSSEMLMKLART 135
RD+AL I +P S VN+EY+ D + +D + + GK ++ ++KL R
Sbjct: 93 RDSALNINSHYSVPMSHVNREYFADEHDPKTRAGLDYES---SFGKMQ-PNDTILKLQRR 148
Query: 136 TPYYKRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKL 195
TP Y++NRP ICSF+ G+C+RG EC +RHE P + L+ QNI+DRYY VNDPVA KL
Sbjct: 149 TPSYEKNRPKICSFYTIGQCKRGAECSFRHEMPETGE--LSHQNIRDRYYSVNDPVAMKL 206
Query: 196 MARASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQ 255
+ +A M L+PPED++I TLYVG L ++ EQD+ DHFY +GE+ S+ ++++ + Q
Sbjct: 207 LRKAGEMGTLEPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAEDG-KYDQ 265
Query: 256 YTSRPAAEAAVEHS 269
S + ++ H+
Sbjct: 266 SGSNQQQQGSIAHT 279
>GENEDB_PFALCIPARUM|PFL2310w [details] [associations]
symbol:PFL2310w "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:AE014188 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 RefSeq:XP_001350866.1
ProteinModelPortal:Q8I4V2 EnsemblProtists:PFL2310w:mRNA
GeneID:811514 KEGG:pfa:PFL2310w EuPathDB:PlasmoDB:PF3D7_1248200
OMA:REFFAQN ProtClustDB:CLSZ2432105 Uniprot:Q8I4V2
Length = 357
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 99/264 (37%), Positives = 164/264 (62%)
Query: 20 KEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQVR 79
+E+ GKECKIC FT FRW PG R+K+T +C CA++KNVCQTCL DL+Y LP+QVR
Sbjct: 40 REENGKECKICKNVFTHFRWKPGENSRYKQTVICMKCAKVKNVCQTCLFDLQYNLPVQVR 99
Query: 80 DTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPYY 139
D L+ +P+++ N+ ++++ M++++ S+T K + + L KL R PY+
Sbjct: 100 DKFLENSIVLPENETNRNFFLEQMENDM----SST----YDKMNRINMDLSKLKRRDPYF 151
Query: 140 KRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMARA 199
KRN +CSFW K C RG+ECPY H K D L++QNIK+RY G ND +AEK++ +
Sbjct: 152 KRNMARVCSFWRKNSCNRGDECPYLH-KEIHLDKSLSNQNIKNRYTGENDILAEKILLKH 210
Query: 200 STMPKLDPPEDKTITT-LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
+ +DK ++ + + + + +++ ++++ F +FG+I+S+ ++ K FI Y++
Sbjct: 211 NEKNN----DDKNMSNKICIQGISESVSQANIKECFKKFGDIKSIKVIPKDSKMFISYSN 266
Query: 259 RPAAEAAVEHSFNKVILGGRRLNI 282
AA+ A + + ++L G L +
Sbjct: 267 SQAAKKASDKYKDGLLLNGCNLTV 290
>UNIPROTKB|Q8I4V2 [details] [associations]
symbol:PFL2310w "Pre-mRNA-splicing factor PFL2310w"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:AE014188 eggNOG:NOG277760 HOGENOM:HOG000171086
KO:K12872 RefSeq:XP_001350866.1 ProteinModelPortal:Q8I4V2
EnsemblProtists:PFL2310w:mRNA GeneID:811514 KEGG:pfa:PFL2310w
EuPathDB:PlasmoDB:PF3D7_1248200 OMA:REFFAQN ProtClustDB:CLSZ2432105
Uniprot:Q8I4V2
Length = 357
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 99/264 (37%), Positives = 164/264 (62%)
Query: 20 KEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQVR 79
+E+ GKECKIC FT FRW PG R+K+T +C CA++KNVCQTCL DL+Y LP+QVR
Sbjct: 40 REENGKECKICKNVFTHFRWKPGENSRYKQTVICMKCAKVKNVCQTCLFDLQYNLPVQVR 99
Query: 80 DTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPYY 139
D L+ +P+++ N+ ++++ M++++ S+T K + + L KL R PY+
Sbjct: 100 DKFLENSIVLPENETNRNFFLEQMENDM----SST----YDKMNRINMDLSKLKRRDPYF 151
Query: 140 KRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMARA 199
KRN +CSFW K C RG+ECPY H K D L++QNIK+RY G ND +AEK++ +
Sbjct: 152 KRNMARVCSFWRKNSCNRGDECPYLH-KEIHLDKSLSNQNIKNRYTGENDILAEKILLKH 210
Query: 200 STMPKLDPPEDKTITT-LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
+ +DK ++ + + + + +++ ++++ F +FG+I+S+ ++ K FI Y++
Sbjct: 211 NEKNN----DDKNMSNKICIQGISESVSQANIKECFKKFGDIKSIKVIPKDSKMFISYSN 266
Query: 259 RPAAEAAVEHSFNKVILGGRRLNI 282
AA+ A + + ++L G L +
Sbjct: 267 SQAAKKASDKYKDGLLLNGCNLTV 290
>ASPGD|ASPL0000064523 [details] [associations]
symbol:AN7145 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:BN001304
EMBL:AACD01000122 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
RefSeq:XP_664749.1 ProteinModelPortal:Q5AX35 GeneID:2870109
KEGG:ani:AN7145.2 OMA:DLNRSGW OrthoDB:EOG47H908 Uniprot:Q5AX35
Length = 377
Score = 311 (114.5 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
Identities = 61/125 (48%), Positives = 78/125 (62%)
Query: 20 KEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQVR 79
KE YG ECKIC RPFT+FRW R K+T +C TCARLKN CQ C+LDL +GLPI VR
Sbjct: 37 KEDYGAECKICTRPFTIFRWKADRTARTKRTNICLTCARLKNCCQCCMLDLSFGLPIVVR 96
Query: 80 DTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSS-EMLMKLARTTPY 138
D ALK+ P+S +N+EYY Q + EI + K + E+L +LA + PY
Sbjct: 97 DAALKMVAPGPQSSINREYYAQGHEKEIE--EGRGAVEEYEKTDEKARELLRRLANSEPY 154
Query: 139 YKRNR 143
Y++ R
Sbjct: 155 YRKPR 159
Score = 189 (71.6 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
Identities = 40/98 (40%), Positives = 56/98 (57%)
Query: 207 PPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAV 266
PP D IT+L+V + D L E LR F QFG++RS+ + CAFI Y +R +AEAA
Sbjct: 230 PPADPNITSLFVTGVEDDLPEHALRSFFVQFGQLRSLVCSHRAHCAFINYAARESAEAAA 289
Query: 267 EHSFNKVILGGRRLNIKWGRAQANRGEDTAE-LKVRLE 303
+H K ++ G L ++WG+ +A D E LK E
Sbjct: 290 KHCQGKAVVQGCPLRVRWGKPKALDNMDREERLKYARE 327
>DICTYBASE|DDB_G0290649 [details] [associations]
symbol:DDB_G0290649 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 dictyBase:DDB_G0290649 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AAFI02000164 eggNOG:NOG277760 KO:K12872 RefSeq:XP_635624.2
ProteinModelPortal:Q54FZ3 EnsemblProtists:DDB0233459 GeneID:8627696
KEGG:ddi:DDB_G0290649 OMA:NIENTEE Uniprot:Q54FZ3
Length = 407
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 103/282 (36%), Positives = 162/282 (57%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
T+ ++ KECKIC RP+ V+RW PG+ R+K+TE+C+TC+++KNVCQ C+ DLE+GLP+QV
Sbjct: 37 TRSEFDKECKICTRPYNVYRWKPGSSSRYKRTEICKTCSQVKNVCQACIHDLEFGLPVQV 96
Query: 79 RDTALKIK--DDIPKSDVNKEYYI-QN---MDHEIGKIDSTTPAGA---LGKASGSSEML 129
RD AL ++ +D EY +N +D+ + D+ P+ L K S
Sbjct: 97 RDAALAANQFENSYVTDKGIEYQATENQRLIDNGLISYDNFQPSDIVTKLAKTIPKSNFN 156
Query: 130 MKLARTTPYYKRN---RPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYG 186
+N P ICSF+ KG C RG+ECPYRH+ + ++ IKD G
Sbjct: 157 NSSNNNNNNNNKNDSNAPKICSFFQKGNCNRGDECPYRHDLNS------SNTEIKD---G 207
Query: 187 VNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLG-DKLTEQDLRDHFYQFGEIRSVTI 245
VN +K PK P D++ITTL++GNL DK+TE ++++ + FG I+ V +
Sbjct: 208 VNKIQQQK-------PPK--KPIDQSITTLFLGNLEFDKITEDHIKNNLFVFGNIKKVKL 258
Query: 246 LSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287
+ Q+CAF+ + +R +AE+A++ FN + + + W ++
Sbjct: 259 IEHQKCAFVTFETRESAESAIDSLFNNFKIDNCEIKLNWSKS 300
>UNIPROTKB|Q2KH70 [details] [associations]
symbol:MGCH7_ch7g115 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM000230 ProteinModelPortal:Q2KH70
Uniprot:Q2KH70
Length = 366
Score = 298 (110.0 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 59/126 (46%), Positives = 80/126 (63%)
Query: 20 KEKYGKECKICARPFTVFRWCPG-ARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQV 78
KE YG ECK+C RPFTVF W A R K+T +C TCARLKN CQ C+LDL +GLPI V
Sbjct: 3 KEDYGAECKLCTRPFTVFSWSADRAHGRKKRTNICLTCARLKNCCQGCMLDLSFGLPIVV 62
Query: 79 RDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSS-EMLMKLARTTP 137
RD ALK+ P+S++N+E++ QN + I D K + E+L +LA++ P
Sbjct: 63 RDAALKMVAPGPQSEINREFFAQNNEKAIE--DGKAGVEEYEKTDDKARELLRRLAQSKP 120
Query: 138 YYKRNR 143
Y+++ R
Sbjct: 121 YFRKGR 126
Score = 182 (69.1 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 207 PPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAV 266
PP+DKT+T+L+V + D L E +RDHF FG+I+S+ CAF+ Y +R AAE A
Sbjct: 207 PPDDKTVTSLFVTGVEDDLPEHKVRDHFKTFGKIKSLVCSHMSHCAFVNYETREAAENAA 266
Query: 267 EHSFNKVILGGRRLNIKWGRAQA 289
+ ++ G L + WG+ +A
Sbjct: 267 MECKGRAVIAGCPLRVHWGKPKA 289
>POMBASE|SPCC550.02c [details] [associations]
symbol:cwf5 "RNA-binding protein Cwf5" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IC] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 PomBase:SPCC550.02c EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:NOG277760 HOGENOM:HOG000171086
KO:K12872 GO:GO:0045292 OMA:REFFAQN OrthoDB:EOG47H908 EMBL:AF254352
EMBL:AB027880 PIR:T41377 RefSeq:NP_588094.1
ProteinModelPortal:O59800 IntAct:O59800 STRING:O59800 PRIDE:O59800
EnsemblFungi:SPCC550.02c.1 GeneID:2538974 KEGG:spo:SPCC550.02c
NextBio:20800149 Uniprot:O59800
Length = 354
Score = 266 (98.7 bits), Expect = 2.1e-42, Sum P(3) = 2.1e-42
Identities = 61/189 (32%), Positives = 101/189 (53%)
Query: 14 SWEDATKEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYG 73
S+ TKE G+ECKIC++P T+FRW + KT++C CAR KN CQ+C+LDL++G
Sbjct: 31 SYVRMTKEPLGQECKICSKPCTIFRWIKERGQKPGKTQICVGCARYKNCCQSCMLDLQFG 90
Query: 74 LPIQVRDTALKIKDDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLA 133
LPI +RD ALK+ + P +D+N+E++ QN + ++ + +AS ++ L+K
Sbjct: 91 LPIALRDAALKLVESGPTNDINREFFAQNQQRLLSNGETAYDSQ---EASAAARNLVKKV 147
Query: 134 RTTPYY----KRNRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVN- 188
+ KR + S + E R + E+P P + + N+ +N
Sbjct: 148 EKRELHSRPPKRKLDDVESKQILKEAR-ASDASLNAERPLFPVKKIINGNVS---LSINM 203
Query: 189 DPVAEKLMA 197
+P +K +A
Sbjct: 204 EPPKDKKIA 212
Score = 173 (66.0 bits), Expect = 2.1e-42, Sum P(3) = 2.1e-42
Identities = 33/106 (31%), Positives = 62/106 (58%)
Query: 190 PVAEKLMARASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQ 249
PV + + S ++PP+DK I +L++ + D+L + +R HF Q+G ++SV +
Sbjct: 188 PVKKIINGNVSLSINMEPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVCSHRA 247
Query: 250 QCAFIQYTSRPAAE-AAVEHSFNKVILGGRRLNIKWGRAQANRGED 294
+CAF+ + +R +AE AA V++ G RL ++WG+ ++ G +
Sbjct: 248 KCAFVNFKTRSSAEIAAAASPDGNVVIEGFRLKVQWGKPRSLGGPE 293
Score = 37 (18.1 bits), Expect = 2.1e-42, Sum P(3) = 2.1e-42
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 11 NRQSWEDATKEKYGKECKIC 30
N+Q WED ++ C+ C
Sbjct: 10 NKQEWEDV---EFPSICERC 26
>TAIR|locus:2146668 [details] [associations]
symbol:AT5G04210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL391716
eggNOG:NOG277760 KO:K12872 UniGene:At.27184 IPI:IPI00523206
RefSeq:NP_196041.1 UniGene:At.50700 ProteinModelPortal:Q9FYE0
SMR:Q9FYE0 EnsemblPlants:AT5G04210.1 GeneID:830300
KEGG:ath:AT5G04210 TAIR:At5g04210 InParanoid:Q9FYE0
PhylomeDB:Q9FYE0 Genevestigator:Q9FYE0 Uniprot:Q9FYE0
Length = 193
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 54/145 (37%), Positives = 77/145 (53%)
Query: 146 ICSFWVKG-ECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMARASTMPK 204
IC + G +C RG C YRHE D R G+ +P +++ARA
Sbjct: 16 ICPLFDAGRQCTRGTMCLYRHEINRGLD-------CHGRS-GLENPFVLEVLARACNTGP 67
Query: 205 LDPPEDKTITTLYVGNL-GDKLTEQDLRDHFYQFGEIRSVTILSKQ---QCAFIQYTSRP 260
L PPED++I TLY+ L + EQD+RDHF +GEI S+ I + CAF+ YT+R
Sbjct: 68 LKPPEDQSIKTLYIRRLINSSVLEQDIRDHFCPYGEIESIVIFPHRGGGTCAFLTYTTRL 127
Query: 261 AAEAAVEHSFNKVILGGRRLNIKWG 285
AAE A+ + + G+R+ + WG
Sbjct: 128 AAEKAMLELSSWTDIKGQRVKLLWG 152
>CGD|CAL0004353 [details] [associations]
symbol:orf19.5364 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR012677 CGD:CAL0004353
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:AACQ01000059 EMBL:AACQ01000058
eggNOG:NOG277760 KO:K12872 RefSeq:XP_717087.1 RefSeq:XP_717166.1
ProteinModelPortal:Q5A5N5 GeneID:3641243 GeneID:3641296
KEGG:cal:CaO19.12824 KEGG:cal:CaO19.5364 Uniprot:Q5A5N5
Length = 303
Score = 194 (73.4 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 33/66 (50%), Positives = 48/66 (72%)
Query: 20 KEKYGKECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTCLLDLEYGLPIQVR 79
K+ G EC+ C RP+T++RW G R + KT +C TCAR ++ CQ+CLLD+ YG+P +R
Sbjct: 23 KQVNGDECRQCTRPYTIYRW--GNRKQGNKTIICITCARARHCCQSCLLDITYGIPTDLR 80
Query: 80 DTALKI 85
DTAL++
Sbjct: 81 DTALEM 86
Score = 59 (25.8 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 205 LDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAA-- 262
LD + +TT +V + + Q+G++ SV S C FI++ +A
Sbjct: 160 LDVQKYPDMTTFFVFGFSSDFPQAIFSRYAEQYGKVESVVFSSVSGCGFIRFEKVSSAVG 219
Query: 263 --EAAVEHSFNK 272
++ E+ NK
Sbjct: 220 FAKSIAENGLNK 231
>UNIPROTKB|Q6BLU8 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:284592
"Debaryomyces hansenii CBS767" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS]
[GO:0017070 "U6 snRNA binding" evidence=ISS] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0045787 "positive regulation of cell
cycle" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0007049 GO:GO:0000387 GO:GO:0045787
GO:GO:0045292 GO:GO:0000974 EMBL:CR382138 GenomeReviews:CR382138_GR
eggNOG:NOG288665 HOGENOM:HOG000172735 OrthoDB:EOG4PK5HT
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 RefSeq:XP_460823.2
ProteinModelPortal:Q6BLU8 STRING:Q6BLU8 GeneID:2904337
KEGG:dha:DEHA2F10560g OMA:NIRWANE Uniprot:Q6BLU8
Length = 339
Score = 172 (65.6 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 54/182 (29%), Positives = 83/182 (45%)
Query: 126 SEMLMKLARTTPYYKR--NRPHICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDR 183
S+ + + + + Y K N P +C F+ +G C G++C Y H P+D D + Q+ R
Sbjct: 78 SKFRVNIKKDSGYTKAPSNAP-LCLFFARGCCYLGKKCSYYHRLPSDTDYFIPTQDCFGR 136
Query: 184 YYGVNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNL--GDKLTEQDLRDHFYQFGEIR 241
+K M + K+ TLY+G L DK+ E L HF +FG I
Sbjct: 137 ---------DKTSDYKDDMNGVGS-FSKSNRTLYIGGLHMDDKM-ENTLTKHFQEFGSID 185
Query: 242 SVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGEDTAELKVR 301
+ +L + CAF+ + + A+ A E N+ + G LNI+W N E K R
Sbjct: 186 KIRVLHSKACAFVTFRTENEAQFAKEAMQNQSLDGNEVLNIRWANEDPNPEAQRQE-KRR 244
Query: 302 LE 303
LE
Sbjct: 245 LE 246
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 172 (65.6 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 38/93 (40%), Positives = 56/93 (60%)
Query: 202 MPK--LDPPE-DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTS 258
MP L PE D TT++VG L +T++DL+ F +FGEI SV I + C F+Q+ +
Sbjct: 289 MPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVN 348
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291
RP AE A+E N ++G + + + WGR AN+
Sbjct: 349 RPNAEEALE-KLNGTVIGKQTVRLSWGRNPANK 380
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 171 (65.3 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 35/84 (41%), Positives = 53/84 (63%)
Query: 209 EDKTI-TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVE 267
E TI TT++VG L +T++DL+ F +FGEI SV I + C F+Q+ +RP AE A+E
Sbjct: 300 EGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALE 359
Query: 268 HSFNKVILGGRRLNIKWGRAQANR 291
N ++G + + + WGR AN+
Sbjct: 360 -KLNGTVIGKQTVRLSWGRNPANK 382
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 168 (64.2 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 30/82 (36%), Positives = 55/82 (67%)
Query: 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS 269
D + TT++VG L ++T+++LR F QFGE+ SV I + + C F+Q++ R +A+ A++
Sbjct: 291 DSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQ-K 349
Query: 270 FNKVILGGRRLNIKWGRAQANR 291
+ I+G + + + WGR+ AN+
Sbjct: 350 LSGAIIGKQAVRLSWGRSPANK 371
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 167 (63.8 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS 269
D T TT++VG + +TE DL+ F QFGE+ V I + ++C F+QY +R AE A+
Sbjct: 274 DPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALS-V 332
Query: 270 FNKVILGGRRLNIKWGRAQANR 291
N LGG+ + + WGR+ +N+
Sbjct: 333 LNGTQLGGQSIRLSWGRSPSNK 354
>CGD|CAL0001095 [details] [associations]
symbol:orf19.674 species:5476 "Candida albicans" [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IEA] [GO:0071006
"U2-type catalytic step 1 spliceosome" evidence=IEA] [GO:0000974
"Prp19 complex" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0000387 "spliceosomal snRNP
assembly" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360 CGD:CAL0001095
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0007049 GO:GO:0000387 GO:GO:0045787
GO:GO:0045292 GO:GO:0000974 eggNOG:NOG288665 GO:GO:0036002
GO:GO:0017070 GO:GO:0033120 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713807.1 RefSeq:XP_713847.1 ProteinModelPortal:Q59W50
STRING:Q59W50 GeneID:3644493 GeneID:3644554 KEGG:cal:CaO19.674
KEGG:cal:CaO19.8291 Uniprot:Q59W50
Length = 363
Score = 165 (63.1 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 58/223 (26%), Positives = 100/223 (44%)
Query: 87 DDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPYYKRNR-PH 145
+DI D++K + N + I S + A K++ S+ ++++ + K N+ H
Sbjct: 27 EDI--DDLDKTQQVNNHQYNIWYSKSLSDAN--NKSTTKSKYRVRISTDQGFTKANKNTH 82
Query: 146 ICSFWVKGECRRGEECPYRHEKPTDPDD--PLADQNIKDRYYGVNDPVAEKLMARASTMP 203
IC F+ +G C G +C Y H P + D+ P D +D+ D M ++
Sbjct: 83 ICLFFSRGCCYLGSKCQYFHRLPKESDNFKPTQDCFGRDKTANYRDD-----MDGVGSLN 137
Query: 204 KLDPPEDKTITTLYVGNLGDKL-TEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAA 262
K++ TLYVG + K TEQ L +F +FG + V +L + CAF+ + A
Sbjct: 138 KVN-------CTLYVGGIHIKPNTEQLLVKNFQEFGTVEKVRVLQGKGCAFVTMKTENQA 190
Query: 263 EAAVEHSFNKVILGGRR--LNIKWGRAQANRGEDTAELKVRLE 303
+ A E ++ ++ G L ++W N E K + E
Sbjct: 191 QFAKEAMQSQSLVEGSNEVLYVRWANEDKNPAAQKQEKKRQQE 233
>UNIPROTKB|Q59W50 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:237561
"Candida albicans SC5314" [GO:0000387 "spliceosomal snRNP assembly"
evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS] [GO:0017070
"U6 snRNA binding" evidence=ISS] [GO:0033120 "positive regulation
of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0045787 "positive regulation of cell cycle"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
CGD:CAL0001095 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049 GO:GO:0000387
GO:GO:0045787 GO:GO:0045292 GO:GO:0000974 eggNOG:NOG288665
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 EMBL:AACQ01000117
EMBL:AACQ01000116 RefSeq:XP_713807.1 RefSeq:XP_713847.1
ProteinModelPortal:Q59W50 STRING:Q59W50 GeneID:3644493
GeneID:3644554 KEGG:cal:CaO19.674 KEGG:cal:CaO19.8291
Uniprot:Q59W50
Length = 363
Score = 165 (63.1 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 58/223 (26%), Positives = 100/223 (44%)
Query: 87 DDIPKSDVNKEYYIQNMDHEIGKIDSTTPAGALGKASGSSEMLMKLARTTPYYKRNR-PH 145
+DI D++K + N + I S + A K++ S+ ++++ + K N+ H
Sbjct: 27 EDI--DDLDKTQQVNNHQYNIWYSKSLSDAN--NKSTTKSKYRVRISTDQGFTKANKNTH 82
Query: 146 ICSFWVKGECRRGEECPYRHEKPTDPDD--PLADQNIKDRYYGVNDPVAEKLMARASTMP 203
IC F+ +G C G +C Y H P + D+ P D +D+ D M ++
Sbjct: 83 ICLFFSRGCCYLGSKCQYFHRLPKESDNFKPTQDCFGRDKTANYRDD-----MDGVGSLN 137
Query: 204 KLDPPEDKTITTLYVGNLGDKL-TEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAA 262
K++ TLYVG + K TEQ L +F +FG + V +L + CAF+ + A
Sbjct: 138 KVN-------CTLYVGGIHIKPNTEQLLVKNFQEFGTVEKVRVLQGKGCAFVTMKTENQA 190
Query: 263 EAAVEHSFNKVILGGRR--LNIKWGRAQANRGEDTAELKVRLE 303
+ A E ++ ++ G L ++W N E K + E
Sbjct: 191 QFAKEAMQSQSLVEGSNEVLYVRWANEDKNPAAQKQEKKRQQE 233
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 158 (60.7 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 39/112 (34%), Positives = 56/112 (50%)
Query: 185 YGVNDPVAEKL-MARASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSV 243
YG P A A + M ++ D TT++VG L +TE +LR F FG+I V
Sbjct: 254 YGYQQPQAPPPNTAFNNPMQPMNQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGDITYV 313
Query: 244 TILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGEDT 295
I + C F+Q+ R AAE A+ + +G R+ + WGR+Q N G T
Sbjct: 314 KIPPGKGCGFVQFVHRHAAEMAI-NQMQGYPIGNSRVRLSWGRSQNNSGVGT 364
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 155 (59.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS 269
D TT++VG L +TE +LR F FGEI V I + C F+Q+ R AAE A+ +
Sbjct: 282 DPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAI-NQ 340
Query: 270 FNKVILGGRRLNIKWGRAQANRG 292
+G R+ + WGR+Q N G
Sbjct: 341 MQGYPIGNSRVRLSWGRSQNNSG 363
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 154 (59.3 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 30/88 (34%), Positives = 53/88 (60%)
Query: 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS 269
D TT++VG L + E+ LR F +GE+ V I++ ++C F+Q+ +R +AE A+ S
Sbjct: 278 DPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALS-S 336
Query: 270 FNKVILGGRRLNIKWGRAQANRGEDTAE 297
N LGG+ + + WGR+ +++ D +
Sbjct: 337 LNGTQLGGQSIRLSWGRSPSSKQTDQTQ 364
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 153 (58.9 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS 269
D TT++VG L +T+ +L+ F QFGE+ V I ++C F+QY ++ +AE A+
Sbjct: 256 DPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALS-V 314
Query: 270 FNKVILGGRRLNIKWGRAQANRGEDTAE 297
N LGG+ + + WGR+ N+ D A+
Sbjct: 315 LNGTQLGGQSIRLSWGRSP-NKQSDQAQ 341
>SGD|S000000269 [details] [associations]
symbol:ECM2 "Pre-mRNA splicing factor" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] SGD:S000000269 GO:GO:0005634 GO:GO:0005681
EMBL:BK006936 KO:K16261 GO:GO:0003723 GO:GO:0000398
RefSeq:NP_009624.4 GeneID:852360 KEGG:sce:YBR068C eggNOG:NOG277760
KO:K12872 EMBL:Z35935 GeneTree:ENSGT00390000002792
OrthoDB:EOG47H908 EMBL:Z35934 PIR:S45925 RefSeq:NP_009621.3
ProteinModelPortal:P38241 DIP:DIP-5359N IntAct:P38241
MINT:MINT-570568 STRING:P38241 PaxDb:P38241 EnsemblFungi:YBR065C
GeneID:852357 KEGG:sce:YBR065C CYGD:YBR065c HOGENOM:HOG000154338
OMA:KAIMADK NextBio:971116 Genevestigator:P38241 GermOnline:YBR065C
Uniprot:P38241
Length = 364
Score = 152 (58.6 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 19 TKEKYGKECKICARPFTVFRWCPGARMR-FKKTEVCQTCARLKNVCQTCLLDLEYGLPIQ 77
TK G ECKIC PFT++ + R KT +C CA +N+CQ C+LD + +PIQ
Sbjct: 26 TKIPQGSECKICTLPFTLYHFKTSKRSNNIIKTLICVRCATQRNICQCCMLDSRWHIPIQ 85
Query: 78 VRDTALKIKDD 88
+RD + + ++
Sbjct: 86 LRDHLISLVNE 96
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 152 (58.6 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS 269
+ T T++VG + + ++DLR F QFGE+ SV I + C F+Q+ R +AE A+E S
Sbjct: 317 ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIE-S 375
Query: 270 FNKVILGGRRLNIKWGRA 287
N ++G + + WGR+
Sbjct: 376 LNGTVIGKNTVRLSWGRS 393
>UNIPROTKB|Q51TF7 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:242507
"Magnaporthe oryzae 70-15" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS]
[GO:0017070 "U6 snRNA binding" evidence=ISS] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0045787 "positive regulation of cell
cycle" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049 EMBL:CM001231
GO:GO:0000387 GO:GO:0045787 GO:GO:0045292 GO:GO:0000974
eggNOG:NOG288665 OrthoDB:EOG4PK5HT GO:GO:0036002 GO:GO:0017070
GO:GO:0033120 RefSeq:XP_003711071.1 ProteinModelPortal:Q51TF7
STRING:Q51TF7 EnsemblFungi:MGG_08641T0 GeneID:2678873
KEGG:mgr:MGG_08641 Uniprot:Q51TF7
Length = 394
Score = 150 (57.9 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 47/179 (26%), Positives = 86/179 (48%)
Query: 132 LARTTPYYKRNRP---HICSFWVKGECRRGEECPYRHEKPTDPD--DPLADQNIKDRYYG 186
+A+ + Y K ++ + C F+ +G C +G++C Y H PT D P D +DR+
Sbjct: 92 VAKDSGYTKADQTTGSYFCLFFARGVCPKGQDCEYLHRLPTLHDLYSPNVDCFGRDRFSD 151
Query: 187 VNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLG--DKLTEQDLRDHFYQFGEIRSVT 244
D M + + +++T+ YVG + D + E R HF ++G++ +
Sbjct: 152 YRDD-----MGGVGSFMR----QNRTV---YVGRIHVTDDIEEVVAR-HFAEWGQVERIR 198
Query: 245 ILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGEDTAELKVRLE 303
+L+++ AFI YT+ A+ A E ++ + LN++W A N E + R+E
Sbjct: 199 VLNQRGVAFITYTNEANAQFAKEAMAHQSLDHNEILNVRWATADPNPMAQAREAR-RVE 256
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 150 (57.9 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS 269
D TT++VG L +T+ L++ F Q+GEI V I + ++C F+Q++ + AE A+
Sbjct: 257 DPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALR-M 315
Query: 270 FNKVILGGRRLNIKWGRAQANR 291
N V LGG + + WGR+ +N+
Sbjct: 316 LNGVQLGGTTVRLSWGRSPSNK 337
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 150 (57.9 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 38/120 (31%), Positives = 63/120 (52%)
Query: 170 DPDDPLADQN---IKDRYYGVNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLGDKLT 226
+ D L D N I ++ VN+P ++L ++ ST+P L D T +YV L +
Sbjct: 167 EKDKALIDMNGFYINNKPIKVNNPTHKRLNSQTSTIPDLTST-DPNNTAIYVSQLDHYID 225
Query: 227 EQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286
E L+ F +GEI + +L+ + AF+ + +R +AEAA N +G RL ++WG+
Sbjct: 226 EGVLQTIFGAYGEISYIKMLTNKFSAFVNFVNRESAEAAF--GLNNFPVGNTRLKVQWGK 283
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 149 (57.5 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 37/106 (34%), Positives = 57/106 (53%)
Query: 190 PVAEKLMARASTMPKLDPPE-DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK 248
PV A + PPE D T TT+ V NL +TE++L+ F Q GE+ V I +
Sbjct: 212 PVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPAT 271
Query: 249 QQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGED 294
+ ++Q+ +RP+AE AV+ +VI G + + I W + N G+D
Sbjct: 272 KGYGYVQFKTRPSAEEAVQRMQGQVI-GQQAVRISWSK---NPGQD 313
>UNIPROTKB|P0CR14 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:214684
"Cryptococcus neoformans var. neoformans JEC21" [GO:0000387
"spliceosomal snRNP assembly" evidence=ISS] [GO:0000974 "Prp19
complex" evidence=ISS] [GO:0017070 "U6 snRNA binding" evidence=ISS]
[GO:0033120 "positive regulation of RNA splicing" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] [GO:0045787 "positive
regulation of cell cycle" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049
GO:GO:0000387 GO:GO:0045787 GO:GO:0045292 GO:GO:0000974
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 EMBL:AE017349
RefSeq:XP_572680.1 ProteinModelPortal:P0CR14 GeneID:3259504
KEGG:cne:CNI02720 Uniprot:P0CR14
Length = 342
Score = 147 (56.8 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 54/164 (32%), Positives = 76/164 (46%)
Query: 145 HICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMARASTMPK 204
+ C F+ +G C G EC Y H P P L D N +D +G EK M
Sbjct: 81 YCCLFFARGCCPYGYECQYLHRLPL-PSHQLPD-NSRD-CFG-----REKHADYRDDMGG 132
Query: 205 LDPPEDKTITTLYVGNLG---DK--LTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSR 259
+ ++ TLY+G + DK +TE LR HF ++G+I IL + AF+ Y +
Sbjct: 133 VGS-FNRQNRTLYIGKIQESPDKKQMTETLLR-HFGEWGKIVKYNILFGRGVAFVTYETD 190
Query: 260 PAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGEDTAELKVRLE 303
A A E N+ + G LN++W N GE AE K R+E
Sbjct: 191 HQASFAKEAMANQSMDGDEILNVRWATEDPNPGEKVAEEK-RIE 233
>UNIPROTKB|P0CR15 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:283643
"Cryptococcus neoformans var. neoformans B-3501A" [GO:0000387
"spliceosomal snRNP assembly" evidence=ISS] [GO:0000974 "Prp19
complex" evidence=ISS] [GO:0017070 "U6 snRNA binding" evidence=ISS]
[GO:0033120 "positive regulation of RNA splicing" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] [GO:0045787 "positive
regulation of cell cycle" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049
GO:GO:0000387 GO:GO:0045787 GO:GO:0045292 GO:GO:0000974
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 EMBL:AAEY01000042
RefSeq:XP_773806.1 ProteinModelPortal:P0CR15 GeneID:4937781
KEGG:cnb:CNBH2580 Uniprot:P0CR15
Length = 342
Score = 147 (56.8 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 54/164 (32%), Positives = 76/164 (46%)
Query: 145 HICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMARASTMPK 204
+ C F+ +G C G EC Y H P P L D N +D +G EK M
Sbjct: 81 YCCLFFARGCCPYGYECQYLHRLPL-PSHQLPD-NSRD-CFG-----REKHADYRDDMGG 132
Query: 205 LDPPEDKTITTLYVGNLG---DK--LTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSR 259
+ ++ TLY+G + DK +TE LR HF ++G+I IL + AF+ Y +
Sbjct: 133 VGS-FNRQNRTLYIGKIQESPDKKQMTETLLR-HFGEWGKIVKYNILFGRGVAFVTYETD 190
Query: 260 PAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGEDTAELKVRLE 303
A A E N+ + G LN++W N GE AE K R+E
Sbjct: 191 HQASFAKEAMANQSMDGDEILNVRWATEDPNPGEKVAEEK-RIE 233
>UNIPROTKB|Q4WU07 [details] [associations]
symbol:cwc2 "Pre-mRNA-splicing factor cwc2" species:330879
"Aspergillus fumigatus Af293" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS]
[GO:0017070 "U6 snRNA binding" evidence=ISS] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0045787 "positive regulation of cell
cycle" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049 EMBL:AAHF01000003
GO:GO:0000387 GO:GO:0045787 GO:GO:0045292 GO:GO:0000974
GenomeReviews:CM000173_GR RefSeq:XP_753957.1
ProteinModelPortal:Q4WU07 STRING:Q4WU07
EnsemblFungi:CADAFUAT00006062 GeneID:3510730 KEGG:afm:AFUA_5G06760
eggNOG:NOG288665 HOGENOM:HOG000172735 OMA:RWATVDP OrthoDB:EOG4PK5HT
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 Uniprot:Q4WU07
Length = 414
Score = 144 (55.7 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 48/179 (26%), Positives = 83/179 (46%)
Query: 132 LARTTPYYKRNR-P--HICSFWVKGECRRGEECPYRHEKPTDPD--DPLADQNIKDRYYG 186
+A+ + Y + ++ P + C F+ +G C +G EC Y H PT D +P D +D++
Sbjct: 117 IAKDSGYTRADKVPGSYFCLFFARGVCPKGHECEYLHRLPTLHDLFNPNVDCFGRDKFSD 176
Query: 187 VNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLG--DKLTEQDLRDHFYQFGEIRSVT 244
D M + + + TLYVG + D + E R HF ++G+I +
Sbjct: 177 YRDD-----MGGVGSFTRQN-------RTLYVGRIHVTDDIEEVVSR-HFAEWGQIDRIR 223
Query: 245 ILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGEDTAELKVRLE 303
+L+ + AF+ YT+ A+ A E ++ + LN++W N E + RLE
Sbjct: 224 VLTSRGVAFVTYTNEANAQFAKEAMAHQSLDHNEILNVRWATVDPNPLAQKREAR-RLE 281
>ASPGD|ASPL0000043504 [details] [associations]
symbol:AN2245 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 EMBL:BN001307 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049 GO:GO:0000387
GO:GO:0045787 EMBL:AACD01000036 GO:GO:0045292 GO:GO:0000974
eggNOG:NOG288665 HOGENOM:HOG000172735 OMA:RWATVDP OrthoDB:EOG4PK5HT
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 RefSeq:XP_659849.1
ProteinModelPortal:Q5BB35 STRING:Q5BB35
EnsemblFungi:CADANIAT00008932 GeneID:2875329 KEGG:ani:AN2245.2
Uniprot:Q5BB35
Length = 417
Score = 142 (55.0 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 52/192 (27%), Positives = 85/192 (44%)
Query: 119 LGKASGSSEMLMKLARTTPYYKRNR---PHICSFWVKGECRRGEECPYRHEKPTDPD--D 173
L K + S +AR + Y + ++ + C F+ +G C +G EC Y H PT D +
Sbjct: 111 LSKTAAPSRC--NIARDSGYTRADKVRGSYFCLFFARGICPKGHECEYLHRLPTLHDLFN 168
Query: 174 PLADQNIKDRYYGVNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLG--DKLTEQDLR 231
P D +D++ D + S M + TLYVG + D + E R
Sbjct: 169 PNVDCFGRDKHSDYRDDMG----GVGSFM--------RQNRTLYVGRIHVTDDIEEVVAR 216
Query: 232 DHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291
HF ++G+I +L+ + AF+ YT+ A+ A E ++ + LN++W N
Sbjct: 217 -HFAEWGQIDRTRVLTSRGVAFVTYTNEANAQFAKEAMAHQSLDHNEILNVRWATVDPNP 275
Query: 292 GEDTAELKVRLE 303
E + RLE
Sbjct: 276 LAQKREAR-RLE 286
>UNIPROTKB|Q5BB35 [details] [associations]
symbol:cwc2 "Pre-mRNA-splicing factor cwc2" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS]
[GO:0017070 "U6 snRNA binding" evidence=ISS] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0045787 "positive regulation of cell
cycle" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 EMBL:BN001307
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049
GO:GO:0000387 GO:GO:0045787 EMBL:AACD01000036 GO:GO:0045292
GO:GO:0000974 eggNOG:NOG288665 HOGENOM:HOG000172735 OMA:RWATVDP
OrthoDB:EOG4PK5HT GO:GO:0036002 GO:GO:0017070 GO:GO:0033120
RefSeq:XP_659849.1 ProteinModelPortal:Q5BB35 STRING:Q5BB35
EnsemblFungi:CADANIAT00008932 GeneID:2875329 KEGG:ani:AN2245.2
Uniprot:Q5BB35
Length = 417
Score = 142 (55.0 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 52/192 (27%), Positives = 85/192 (44%)
Query: 119 LGKASGSSEMLMKLARTTPYYKRNR---PHICSFWVKGECRRGEECPYRHEKPTDPD--D 173
L K + S +AR + Y + ++ + C F+ +G C +G EC Y H PT D +
Sbjct: 111 LSKTAAPSRC--NIARDSGYTRADKVRGSYFCLFFARGICPKGHECEYLHRLPTLHDLFN 168
Query: 174 PLADQNIKDRYYGVNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLG--DKLTEQDLR 231
P D +D++ D + S M + TLYVG + D + E R
Sbjct: 169 PNVDCFGRDKHSDYRDDMG----GVGSFM--------RQNRTLYVGRIHVTDDIEEVVAR 216
Query: 232 DHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291
HF ++G+I +L+ + AF+ YT+ A+ A E ++ + LN++W N
Sbjct: 217 -HFAEWGQIDRTRVLTSRGVAFVTYTNEANAQFAKEAMAHQSLDHNEILNVRWATVDPNP 275
Query: 292 GEDTAELKVRLE 303
E + RLE
Sbjct: 276 LAQKREAR-RLE 286
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 141 (54.7 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKV 273
T++YVGN+ + T+ DLRD F +G+I V I Q+ AF++Y + A A+ K
Sbjct: 327 TSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKE 386
Query: 274 ILGGRRLNIKWGRAQA 289
+ G ++ WGR QA
Sbjct: 387 -MAGNQVRCSWGRTQA 401
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 140 (54.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKV 273
+T++VG L +TE+DL F FGE+ SV I + C F+Q+ +R +AE A+ + N
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGN-LNGT 385
Query: 274 ILGGRRLNIKWGRA 287
++G + + WGR+
Sbjct: 386 VIGKNTVRLSWGRS 399
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 140 (54.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS 269
D T TT++VG L K TE LR F FG I +V I + + C F+++ R AEA+++
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQ-G 414
Query: 270 FNKVILGGRRLNIKWGRAQANRGEDTAEL 298
I+GG + + WGR ++ + + +
Sbjct: 415 LQGFIVGGSPIRLSWGRPSSSNAKTNSTI 443
>DICTYBASE|DDB_G0274995 [details] [associations]
symbol:DDB_G0274995 "Uncharacterized RNA-binding
protein YPL184C" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0274995 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000012 eggNOG:NOG314315 RefSeq:XP_644288.1
ProteinModelPortal:Q86AS4 EnsemblProtists:DDB0217588 GeneID:8619716
KEGG:ddi:DDB_G0274995 InParanoid:Q86AS4 OMA:WIENTRT Uniprot:Q86AS4
Length = 1104
Score = 141 (54.7 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 33/113 (29%), Positives = 62/113 (54%)
Query: 177 DQNIKDRYYGVN--DPVAEKLMARASTMPKLDPPEDKTIT-TLYVGNLGDKLTEQDLRDH 233
+Q + +Y VN P ++ + +P P +I+ +Y+GN+ D L E+++R
Sbjct: 971 NQVLGSQYIVVNFRHPKSDDFINGVPVVPITTPETLNSISRAIYIGNVSDNLPEKEIRKE 1030
Query: 234 FYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGR 286
++GEI S+ IL K+ CAF+ + + P A AA++ + N LG + + +G+
Sbjct: 1031 CEKYGEIESIRILRKKACAFVNFMNIPNATAALQ-TLNGKKLGDTIVRVNYGK 1082
>DICTYBASE|DDB_G0284563 [details] [associations]
symbol:cwc2 "pre-mRNA-splicing factor cwc2"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0045787 "positive regulation of cell cycle" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISS] [GO:0017070 "U6 snRNA
binding" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000974 "Prp19 complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0000387 "spliceosomal
snRNP assembly" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
dictyBase:DDB_G0284563 GenomeReviews:CM000153_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0000387 GO:GO:0045787 EMBL:AAFI02000066 GO:GO:0045292
GO:GO:0000974 eggNOG:NOG288665 GO:GO:0036002 GO:GO:0017070
GO:GO:0033120 RefSeq:XP_638557.1 ProteinModelPortal:Q54PH5
PRIDE:Q54PH5 EnsemblProtists:DDB0267176 GeneID:8624650
KEGG:ddi:DDB_G0284563 OMA:HRVATEV ProtClustDB:CLSZ2846722
Uniprot:Q54PH5
Length = 528
Score = 136 (52.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 36/149 (24%), Positives = 69/149 (46%)
Query: 145 HICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMARASTMPK 204
+ C ++ +G+C G +C H PT DD + +G E+ M
Sbjct: 126 NFCCYFARGKCINGADCTSLHRIPTPEDDKRL--RLTHDIFG-----RERHKTDRDDMNG 178
Query: 205 LDPPEDKTITTLYVGNLGDKLT---EQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPA 261
+ + TLY+G + ++ E +R +F ++G I V +++ + +F++Y +R +
Sbjct: 179 VGS-FSRDNRTLYIGGIKTNVSGSLEDMVRKNFEEWGRIEYVRVITNRSISFVRYLTRSS 237
Query: 262 AEAAVEHSFNKVILGGRRLNIKWGRAQAN 290
AE A E ++ + G LNI+W +N
Sbjct: 238 AEFAKEAMTDQTLDNGELLNIRWATEDSN 266
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 135 (52.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 203 PKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAA 262
P L+ D TT+++G L +TE +LR +F FG I V I + C F+QY R +A
Sbjct: 302 PSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSA 361
Query: 263 EAAVEHSFNKVILGGRRLNIKWGRA 287
EAA+ + R+ + WGR+
Sbjct: 362 EAAIA-GMQGFPIANSRVRLSWGRS 385
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 135 (52.6 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS 269
D TT++VG L ++E L F FG I+ V I + C F++Y++R AE A+ +
Sbjct: 517 DPNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIPPGKNCGFVKYSNREEAEEAIA-A 575
Query: 270 FNKVILGGRRLNIKWGRAQAN 290
++GG R+ + WGR +
Sbjct: 576 MQGFVIGGNRVRLSWGRVSVS 596
>UNIPROTKB|Q6C007 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:284591
"Yarrowia lipolytica CLIB122" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS]
[GO:0017070 "U6 snRNA binding" evidence=ISS] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0045787 "positive regulation of cell
cycle" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0007049 GO:GO:0000387 GO:GO:0045787
GO:GO:0045292 GO:GO:0000974 EMBL:CR382132 GenomeReviews:CR382132_GR
eggNOG:NOG288665 HOGENOM:HOG000172735 OrthoDB:EOG4PK5HT
GO:GO:0036002 GO:GO:0017070 GO:GO:0033120 OMA:NIRWANE
RefSeq:XP_506005.1 ProteinModelPortal:Q6C007 STRING:Q6C007
GeneID:2908799 KEGG:yli:YALI0F29073g Uniprot:Q6C007
Length = 382
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 40/164 (24%), Positives = 77/164 (46%)
Query: 132 LARTTPYYKRNR-P--HICSFWVKGECRRGEECPYRHEKP--TDPDDPLADQNIKDRYYG 186
+AR + Y + ++ P + C ++ +G C +G +C + H P TD P D +DR++
Sbjct: 111 IARDSGYTRADKVPGSYFCLYFARGLCTQGHKCEFLHRLPVLTDMFSPTTDCFGRDRFFD 170
Query: 187 VNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNL--GDKLTEQDLRD----HFYQFGEI 240
D M ++ +++ TLYVG + D L + HF ++G++
Sbjct: 171 YRDD-----MGGIGSISRVN-------RTLYVGRIHVSDAAKAGALDEIVSRHFSEWGDV 218
Query: 241 RSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284
+ +L + AF+ Y + A+ A E ++ + G LN++W
Sbjct: 219 DRIRVLHDKGVAFVTYATEVNAQFAKEAMAHQSLDSGEVLNVRW 262
>POMBASE|SPAC3A12.11c [details] [associations]
symbol:cwf2 "RNA-binding protein Cwf2" species:4896
"Schizosaccharomyces pombe" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017070 "U6 snRNA
binding" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS;IMP] [GO:0045787 "positive regulation of cell cycle"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 PomBase:SPAC3A12.11c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049 GO:GO:0000387
GO:GO:0045787 GO:GO:0045292 GO:GO:0000974 eggNOG:NOG288665
HOGENOM:HOG000172735 OMA:RWATVDP OrthoDB:EOG4PK5HT GO:GO:0036002
GO:GO:0017070 GO:GO:0033120 EMBL:AF250026 RefSeq:NP_593337.1
ProteinModelPortal:P87126 DIP:DIP-34853N IntAct:P87126
STRING:P87126 EnsemblFungi:SPAC3A12.11c.1 GeneID:2542531
KEGG:spo:SPAC3A12.11c NextBio:20803584 Uniprot:P87126
Length = 388
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 48/188 (25%), Positives = 82/188 (43%)
Query: 121 KASGSSEMLMKLARTTPYYKRNR-P--HICSFWVKGECRRGEECPYRHEKPTDPDDPLAD 177
K+ SE ++R + Y K ++ P C ++ +G C G +C Y H P D D +
Sbjct: 88 KSQVKSETRCVISRDSGYTKADKNPGSFFCLYFARGMCSEGSKCEYLHRLPKDTD--FFN 145
Query: 178 QNIKDRYYGVNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLG--DKLTEQDLRDHFY 235
N+ +G EK M + + T LYVG + D + E+ + HF
Sbjct: 146 ANVD--CFG-----REKHADYRDDMGGVGSFLRQNYT-LYVGGITPTDDI-EEIVSRHFA 196
Query: 236 QFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGEDT 295
++G+I + +L+ + AFI Y + A+ A E ++ + LN++W N
Sbjct: 197 EWGDIERIRVLNSRGIAFITYLNEANAQFAKEAMAHQSLDHDECLNVRWATTDPNPASQA 256
Query: 296 AELKVRLE 303
+ RLE
Sbjct: 257 RNQR-RLE 263
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS 269
D +T++VG L ++E++L+ F FGEI V I + C F+Q+ +R +AE A+ +
Sbjct: 299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAI-NQ 357
Query: 270 FNKVILGGRRLNIKWGRAQ 288
LG R+ + WGR Q
Sbjct: 358 LQGYPLGNSRIRLSWGRNQ 376
>UNIPROTKB|F6UBL3 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
EMBL:AC009690 IPI:IPI00909307 HGNC:HGNC:14059
Ensembl:ENST00000437872 Bgee:F6UBL3 Uniprot:F6UBL3
Length = 133
Score = 107 (42.7 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 30/97 (30%), Positives = 47/97 (48%)
Query: 207 PPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRP 260
P +D L+VG + L EQDL+ F +FG I +T+L + CAF+ Y +R
Sbjct: 10 PMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARD 69
Query: 261 AAEAAVEHSFNKVILGGRRLNIKWGRAQANRGEDTAE 297
+A A + L GR + WG ++R T++
Sbjct: 70 SALKAQSALHEQKTLPGRTESCLWGCWASSRVRRTSD 106
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 107 (42.7 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC------AFIQYTSRPAAEAAVEH 268
++YVGN + TE DL ++F Q G + +V I+ ++ AF+++T AA+ AV+
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 269 SFNKVILGGRRLNIKWGRAQAN 290
FN V GR L + + + N
Sbjct: 65 -FNGVDFNGRALRVNLAQNRNN 85
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 107 (42.7 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC------AFIQYTSRPAAEAAVEH 268
++YVGN + TE DL ++F Q G + +V I+ ++ AF+++T AA+ AV+
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 269 SFNKVILGGRRLNIKWGRAQAN 290
FN V GR L + + + N
Sbjct: 65 -FNGVDFNGRALRVNLAQNRNN 85
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 130 (50.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHS 269
D TT++VG L L+E+DL+ F FG I ++ I + C F+QY+ + AAE A+ ++
Sbjct: 293 DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAI-NT 351
Query: 270 FNKVILGGRRLNIKWG 285
++G + + WG
Sbjct: 352 MQGALVGTSHIRLAWG 367
>UNIPROTKB|Q6T412 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:5022
"Leptosphaeria maculans" [GO:0000387 "spliceosomal snRNP assembly"
evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS] [GO:0017070
"U6 snRNA binding" evidence=ISS] [GO:0033120 "positive regulation
of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0045787 "positive regulation of cell cycle"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049 GO:GO:0000387
GO:GO:0045787 GO:GO:0045292 GO:GO:0000974 GO:GO:0036002
GO:GO:0017070 GO:GO:0033120 EMBL:AY437641 ProteinModelPortal:Q6T412
Uniprot:Q6T412
Length = 421
Score = 124 (48.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 42/168 (25%), Positives = 76/168 (45%)
Query: 132 LARTTPYYKRNR-P--HICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNI----KDRY 184
+AR + Y K ++ P + C F+ +G C +G +C Y H PT D + NI +D++
Sbjct: 114 VARDSGYTKADKTPGSYFCLFFARGICPKGVDCEYLHRLPTVTD--IFPSNIDCFGRDKH 171
Query: 185 YGVNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLG--DKLTEQDLRDHFYQFGEIRS 242
D M + + + TLY+G + D + E R HF ++G+I
Sbjct: 172 SDYRDD-----MGGVGSFQRQN-------RTLYIGRIHVTDDIEEIVAR-HFQEWGQIER 218
Query: 243 VTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQAN 290
+L+ + AF+ Y + ++ A E ++ + LN++W N
Sbjct: 219 TRVLTARGVAFVTYMNEANSQFAKEAMAHQSLDHNEILNVRWATVDPN 266
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 123 (48.4 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKV 273
T++YVGN+ LTE ++R F FG I V I Q AF+++ ++ AA A+ N+
Sbjct: 241 TSVYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQD 299
Query: 274 ILGGRRLNIKWGR 286
+ GG+ + WG+
Sbjct: 300 V-GGQLVRCSWGK 311
>FB|FBgn0011305 [details] [associations]
symbol:Rsf1 "Repressor splicing factor 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;TAS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048025 CTD:51773 EMBL:L34935 EMBL:L23835
RefSeq:NP_477001.2 UniGene:Dm.4180 ProteinModelPortal:Q24491
SMR:Q24491 IntAct:Q24491 MINT:MINT-277287 STRING:Q24491
PaxDb:Q24491 PRIDE:Q24491 GeneID:34370 KEGG:dme:Dmel_CG5655
FlyBase:FBgn0011305 eggNOG:NOG255799 InParanoid:Q24491
OrthoDB:EOG4QJQ4W GenomeRNAi:34370 NextBio:788156 Bgee:Q24491
GermOnline:CG5655 Uniprot:Q24491
Length = 197
Score = 115 (45.5 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTI-LSKQQCAFIQYTSRPAAEAAVEH 268
D+ T +YVGNL DK+ + DL F ++G++ SV I + AF+++ R AE A +
Sbjct: 3 DQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDI 62
Query: 269 SFNKVILGGR-RLNIKWGRA-QANRG 292
+LG + R+ I GR Q RG
Sbjct: 63 LNGSELLGSQLRVEISKGRPRQGRRG 88
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 212 TITTLYVGNLGDKLTEQDL-RDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSF 270
T TT+Y G + DL HF QFG I+ V + + +FI++ ++ AA A+EH+
Sbjct: 219 TNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTH 278
Query: 271 NKVILGGRRLNIKWGRAQANRGEDTA 296
N + G + WG+ N G+++A
Sbjct: 279 NSEV-HGNLVKCFWGKE--NGGDNSA 301
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 119 (46.9 bits), Expect = 0.00022, P = 0.00022
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 201 TMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGE--IRSVTILSKQQCAFIQYTS 258
T+ + P + TT+YVGNL ++T+ DL +F+ G I V + + F++Y +
Sbjct: 252 TLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNT 311
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWG 285
P A A++ + L R++ WG
Sbjct: 312 HPEAALAIQMGNTQPYLFNRQIKCSWG 338
>CGD|CAL0001768 [details] [associations]
symbol:orf19.1876 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000243 "commitment complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0001768 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000133 EMBL:AACQ01000132
RefSeq:XP_713133.1 RefSeq:XP_713179.1 ProteinModelPortal:Q59U75
GeneID:3645147 GeneID:3645207 KEGG:cal:CaO19.1876
KEGG:cal:CaO19.9432 Uniprot:Q59U75
Length = 452
Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 201 TMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRP 260
+ P L+ D T+ +G L ++TE +L HF FG++ + Q +I++ SR
Sbjct: 282 SQPALNQFTDPNNTSFTIGGLSGRITESELEQHFIGFGDLVYCRVSKDYQTGYIKFYSRS 341
Query: 261 AAEAAVEHSFNKVILGGRRLNIKWG 285
AAE+A + + +I RL I WG
Sbjct: 342 AAESAFLNMYGFMI-NDCRLQITWG 365
>ZFIN|ZDB-GENE-030131-2527 [details] [associations]
symbol:si:dkey-33c12.4 "si:dkey-33c12.4"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR011990 InterPro:IPR012677
InterPro:IPR013026 InterPro:IPR019734 Pfam:PF00076 PROSITE:PS50005
PROSITE:PS50102 PROSITE:PS50103 PROSITE:PS50293 SMART:SM00028
SMART:SM00360 ZFIN:ZDB-GENE-030131-2527 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 EMBL:BX901922 IPI:IPI00851876
RefSeq:NP_001155071.1 UniGene:Dr.76152 Ensembl:ENSDART00000083362
GeneID:560112 KEGG:dre:560112 GeneTree:ENSGT00510000049407
HOVERGEN:HBG100664 OMA:RYCAFVN NextBio:20883293 Uniprot:B8A599
Length = 631
Score = 120 (47.3 bits), Expect = 0.00030, P = 0.00030
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 207 PPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAV 266
PP + ++VG+L +T L D F G I +V +L + CAF+ YTS+ + E A+
Sbjct: 493 PPHSPELFPIWVGDLVSSITGSKLYDLFKSVGNIHNVRVLPDRYCAFVNYTSKDSCEKAI 552
Query: 267 EHSFNKVILGGRRLNIKW 284
+ FN + G L +++
Sbjct: 553 Q-MFNGHAIDGTTLVVRY 569
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 95 (38.5 bits), Expect = 0.00035, P = 0.00035
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC------AFIQYTSRPAAEAAVEHS 269
+YVG+L +T +L+ F Q+GEI ++ ++ AFI Y ++ AA+ AV +
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 270 FNKVILGGRRLNIKWGRAQANRGE 293
N + L GR++ + R N G+
Sbjct: 80 -NGIDLQGRKIRVNIARE--NTGD 100
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 95 (38.5 bits), Expect = 0.00035, P = 0.00035
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC------AFIQYTSRPAAEAAVEHS 269
+YVG+L +T +L+ F Q+GEI ++ ++ AFI Y ++ AA+ AV +
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 270 FNKVILGGRRLNIKWGRAQANRGE 293
N + L GR++ + R N G+
Sbjct: 80 -NGIDLQGRKIRVNIARE--NTGD 100
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 117 (46.2 bits), Expect = 0.00036, P = 0.00036
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 207 PPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGE--IRSVTILSKQQCAFIQYTSRPAAEA 264
P + TT+YVGNL ++++ DL HF+ G I V + + F++Y++ A
Sbjct: 253 PENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAAL 312
Query: 265 AVEHSFNKVILGGRRLNIKWG 285
A++ L GR++ WG
Sbjct: 313 AIQMGNTHSYLSGRQMKCSWG 333
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 119 (46.9 bits), Expect = 0.00041, P = 0.00041
Identities = 33/95 (34%), Positives = 51/95 (53%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ-----CAFIQYTSRPAAEAAVEH 268
T +Y+ NL ++TEQ+ D F QFGEI S++++ Q F+ Y + A+ AV+
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 269 SFNKVILGGRRLNIKWGRAQANRGEDTAELKVRLE 303
N G++L + GRAQ + E EL+ R E
Sbjct: 321 -LNDKEYKGKKLYV--GRAQ-KKHEREEELRKRYE 351
>RGD|1309495 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309495 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683
OMA:DIREHEI OrthoDB:EOG4CC42K EMBL:BC087684 IPI:IPI00371124
RefSeq:NP_001009255.1 UniGene:Rn.136718 ProteinModelPortal:Q5PPI1
SMR:Q5PPI1 STRING:Q5PPI1 PhosphoSite:Q5PPI1 PRIDE:Q5PPI1
Ensembl:ENSRNOT00000001539 GeneID:288701 KEGG:rno:288701
UCSC:RGD:1309495 InParanoid:Q5PPI1 NextBio:628577
Genevestigator:Q5PPI1 GermOnline:ENSRNOG00000001163 Uniprot:Q5PPI1
Length = 221
Score = 110 (43.8 bits), Expect = 0.00057, P = 0.00057
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC---AFIQYTSRPAAEAAVEHSFNK 272
+YVGNL + E+DL D FY++G IR + + ++ AF+++ AE A+ + N
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAI-YGRNG 74
Query: 273 VILGGRRLNIKWGRAQANRG 292
G RL +++ RA RG
Sbjct: 75 YDYGQCRLRVEFPRAYGGRG 94
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 93 (37.8 bits), Expect = 0.00058, P = 0.00058
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCA------FIQYTSRPAA 262
+D T T ++VG L T+ LR +F FG+I +++ +Q F+ R AA
Sbjct: 6 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 263 EAAVEHSFNKVILGGRRLNI 282
E A + N +I GR+ N+
Sbjct: 66 ERACKDP-NPII-DGRKANV 83
>FB|FBgn0034572 [details] [associations]
symbol:CG9346 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AY069521
UniGene:Dm.2090 ProteinModelPortal:Q7K0X5 PaxDb:Q7K0X5 PRIDE:Q7K0X5
FlyBase:FBgn0034572 InParanoid:Q7K0X5 OrthoDB:EOG469P8S
ArrayExpress:Q7K0X5 Bgee:Q7K0X5 Uniprot:Q7K0X5
Length = 958
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTIL------SKQQ---CAFIQYTSRP 260
D T LY+GNL K++EQ L + F ++G + S+ I+ KQ+ C F+ Y SR
Sbjct: 212 DPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSRK 271
Query: 261 AAEAAVEHSFNKVILGGRRLNIKWGR 286
AE A++ + I+G + + WG+
Sbjct: 272 DAERALKTLNGRYIMG-YEMRLGWGK 296
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 112 (44.5 bits), Expect = 0.00067, P = 0.00067
Identities = 39/126 (30%), Positives = 62/126 (49%)
Query: 166 EKPTDPDDPLADQNIKDRYYGVNDPVAEKLMARASTMPKLDPPEDKTIT---TLYVGNLG 222
E+ P+ P QN+ + + A L+AR P+ D P +K ++YVGN+
Sbjct: 114 EQAQGPEPPRV-QNLDE-----GEEAAGALLARQLLSPETDSPLEKAEADHRSIYVGNVD 167
Query: 223 DKLTEQDLRDHFYQFGEIRSVTILSKQQC------AFIQYTSRPAAEAAVEHSFNKVILG 276
T Q+L +F GEI VTIL + A+I++ + +A+AAVE +K I
Sbjct: 168 YGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQAAVE--LDKSIFR 225
Query: 277 GRRLNI 282
GR + +
Sbjct: 226 GRVIKV 231
>UNIPROTKB|Q4PA86 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:237631
"Ustilago maydis 521" [GO:0000387 "spliceosomal snRNP assembly"
evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS] [GO:0017070
"U6 snRNA binding" evidence=ISS] [GO:0033120 "positive regulation
of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0045787 "positive regulation of cell cycle"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0007049 GO:GO:0000387
GO:GO:0045787 GO:GO:0045292 GO:GO:0000974 eggNOG:NOG288665
OrthoDB:EOG4PK5HT GO:GO:0036002 GO:GO:0017070 GO:GO:0033120
EMBL:AACP01000101 RefSeq:XP_759124.1 ProteinModelPortal:Q4PA86
STRING:Q4PA86 EnsemblFungi:UM02977T0 GeneID:3631002
KEGG:uma:UM02977.1 Uniprot:Q4PA86
Length = 480
Score = 101 (40.6 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 223 DKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVILGGRRLNI 282
D TE+ +R HF ++GEI + +L+ + CAF+ + A+ A E N+ + +N+
Sbjct: 253 DNATERVVRRHFSEWGEIDRLRVLTGRSCAFVTFKYEANAQFAKEAMLNQSLDHNEIINV 312
Query: 283 KWGRAQAN 290
+W N
Sbjct: 313 RWASDDPN 320
Score = 56 (24.8 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 145 HICSFWVKGECRRGEECPYRHEKPTDPDDP 174
+ C + +G C G EC + H P D P
Sbjct: 127 YCCIHFARGCCPHGAECNFLHRLPRPNDYP 156
>UNIPROTKB|F1NW30 [details] [associations]
symbol:Gga.54017 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043175 "RNA polymerase core enzyme
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:AADN02025403
EMBL:AADN02025404 IPI:IPI00579015 Ensembl:ENSGALT00000022182
Uniprot:F1NW30
Length = 1288
Score = 120 (47.3 bits), Expect = 0.00072, P = 0.00072
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 205 LDPPEDKTI----TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRP 260
L P KT+ TTL+VG + K T+QDL + F +FG+I S+ ++ + CA++ R
Sbjct: 465 LPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQ 524
Query: 261 AAEAAVEH-SFNKVILGGRRLNIKWGRAQANRGEDT 295
A A++ S +G + + I W N+G T
Sbjct: 525 DAYRALQKLSSGSYKIGSKIIKIAWA---LNKGVKT 557
>UNIPROTKB|F1NXF6 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 GO:GO:0000381
EMBL:AADN02051058 EMBL:AADN02051059 IPI:IPI00819127
Ensembl:ENSGALT00000040113 OMA:PIHEINI Uniprot:F1NXF6
Length = 476
Score = 115 (45.5 bits), Expect = 0.00073, P = 0.00073
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 207 PPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTIL-----SKQQCAFIQYTSRPA 261
PPED+ L+VG LG + +E D+R F FG+I TIL + + CAF++Y+S
Sbjct: 139 PPEDRK---LFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYSSHAE 195
Query: 262 AEAAV 266
A+AA+
Sbjct: 196 AQAAI 200
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 92 (37.4 bits), Expect = 0.00075, P = 0.00074
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC------AFIQYTSRPAAEAAVE 267
T +YVGNL T+ LR+ F +G + ++ + F+ Y+S AEAAV
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 268 HSFNKVILGGRRLNIK 283
K L GRR+++K
Sbjct: 63 GMDGKE-LNGRRVSVK 77
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 116 (45.9 bits), Expect = 0.00079, P = 0.00079
Identities = 37/95 (38%), Positives = 50/95 (52%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTIL--SKQQC---AFIQYTSRPAAEAAVEH 268
T +YV NL + EQ L+D F QFG+ +SV ++ S Q FI + A+ AV+H
Sbjct: 191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDH 250
Query: 269 SFNKVILGGRRLNIKWGRAQANRGEDTAELKVRLE 303
K + G+ L + GRAQ R E ELK R E
Sbjct: 251 MNGKEV-SGQLLYV--GRAQ-KRAERQNELKRRFE 281
>ASPGD|ASPL0000000121 [details] [associations]
symbol:AN6331 species:162425 "Emericella nidulans"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR002483 InterPro:IPR012677
Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000107 EMBL:BN001301
eggNOG:NOG280405 Gene3D:1.20.1390.10 SUPFAM:SSF101233
OrthoDB:EOG4BGD4C RefSeq:XP_663935.1 ProteinModelPortal:Q5AZE9
EnsemblFungi:CADANIAT00006655 GeneID:2871230 KEGG:ani:AN6331.2
HOGENOM:HOG000166860 OMA:SSRRRCK Uniprot:Q5AZE9
Length = 733
Score = 105 (42.0 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 28/94 (29%), Positives = 46/94 (48%)
Query: 198 RASTMPKLDPPEDKTITTLYVGNL-GDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQY 256
R S P +D ++ T+ V + DKL E +R+ F Q+GEI + + ++ A I Y
Sbjct: 310 RRSEFSAAGPSDDPSMKTIVVEQIPDDKLDEFTVREFFSQYGEITDLQLQPHRKLALITY 369
Query: 257 TSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQAN 290
A+AA S KVI R + + W + + +
Sbjct: 370 ADHATAKAA--WSSPKVIFDNRFVKVYWHKPKGH 401
Score = 55 (24.4 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 147 CSFW-VKGECRRGEECPYRHEK----PTDPD-DPLADQNIKD 182
C F+ +G C G CPY+H+ P D + DP + D
Sbjct: 237 CPFYETQGICYLGGACPYQHDTVAGAPKDDEYDPKTSGIVPD 278
>UNIPROTKB|Q6CT50 [details] [associations]
symbol:CWC2 "Pre-mRNA-splicing factor CWC2" species:284590
"Kluyveromyces lactis NRRL Y-1140" [GO:0000387 "spliceosomal snRNP
assembly" evidence=ISS] [GO:0000974 "Prp19 complex" evidence=ISS]
[GO:0017070 "U6 snRNA binding" evidence=ISS] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0045787 "positive regulation of cell
cycle" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0007049 GO:GO:0000387 GO:GO:0045787 GO:GO:0045292
GO:GO:0000974 eggNOG:NOG288665 HOGENOM:HOG000172735
OrthoDB:EOG4PK5HT GO:GO:0036002 GO:GO:0017070 GO:GO:0033120
OMA:NIRWANE EMBL:CR382123 RefSeq:XP_452889.1
ProteinModelPortal:Q6CT50 STRING:Q6CT50 GeneID:2892477
GenomeReviews:CR382123_GR KEGG:kla:KLLA0C15411g Uniprot:Q6CT50
Length = 337
Score = 112 (44.5 bits), Expect = 0.00090, P = 0.00090
Identities = 42/147 (28%), Positives = 64/147 (43%)
Query: 140 KRNRPHICSFWVKGECRRGEECPYRHEKPTDPDD--PLADQNIKDRYYGVNDPVAEKLMA 197
K R H C ++ KG C G+ C Y H P +PDD LA + +G EK
Sbjct: 67 KEGRIHFCLYFAKGMCCLGKNCRYLHHIP-EPDDFARLALHSSALDCFG-----REKFAD 120
Query: 198 RASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHF------YQFG---EIRSVTILSK 248
M + + K LYVG + L + L+ H Y+FG E+ SV +
Sbjct: 121 YRDDMGGVGSFK-KPNRVLYVGGITGALNNKTLKPHQIENRVKYKFGKLGELDSVRYVES 179
Query: 249 QQCAFIQYTSRPAAEAAVEHSFNKVIL 275
+ CAF+++ + +E E N+ +L
Sbjct: 180 KNCAFVKFKLQCNSEFTKEAMGNQTLL 206
>UNIPROTKB|F1PC86 [details] [associations]
symbol:SCAF8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
CTD:22828 KO:K13191 GeneTree:ENSGT00530000063946 OMA:YRFPPIE
EMBL:AAEX03000284 RefSeq:XP_533458.3 Ensembl:ENSCAFT00000000878
GeneID:476252 KEGG:cfa:476252 Uniprot:F1PC86
Length = 1267
Score = 119 (46.9 bits), Expect = 0.00091, P = 0.00091
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 205 LDPPEDKTI----TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRP 260
L P KT+ TTL+VG + K T+QDL + F +FG+I S+ ++ + CA++ R
Sbjct: 460 LPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQ 519
Query: 261 AAEAAVEH-SFNKVILGGRRLNIKWGRAQANRGEDT 295
A A++ S +G + + I W N+G T
Sbjct: 520 DAFRALQKLSSGSYKIGSKVIKIAWA---LNKGVKT 552
>UNIPROTKB|F1MYK6 [details] [associations]
symbol:LOC540182 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043175 "RNA polymerase core enzyme binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:DAAA02027254
EMBL:DAAA02027255 EMBL:DAAA02027256 IPI:IPI00699704
Ensembl:ENSBTAT00000045257 ArrayExpress:F1MYK6 Uniprot:F1MYK6
Length = 1268
Score = 119 (46.9 bits), Expect = 0.00091, P = 0.00091
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 205 LDPPEDKTI----TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRP 260
L P KT+ TTL+VG + K T+QDL + F +FG+I S+ ++ + CA++ R
Sbjct: 464 LPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQ 523
Query: 261 AAEAAVEH-SFNKVILGGRRLNIKWGRAQANRGEDT 295
A A++ S +G + + I W N+G T
Sbjct: 524 DAFRALQKLSSGSYKIGSKVIKIAWA---LNKGVKT 556
>UNIPROTKB|Q9UPN6 [details] [associations]
symbol:SCAF8 "Protein SCAF8" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IPI] [GO:0016363 "nuclear
matrix" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006366 GO:GO:0016363
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG306894 EMBL:AB029039 EMBL:AL121952
EMBL:AL136976 EMBL:AL591499 EMBL:BC070071 IPI:IPI01012434
RefSeq:NP_055707.3 UniGene:Hs.591329 PDB:2DIW PDB:3D9I PDB:3D9J
PDB:3D9K PDB:3D9L PDB:3D9M PDB:3D9N PDB:3D9O PDB:3D9P PDBsum:2DIW
PDBsum:3D9I PDBsum:3D9J PDBsum:3D9K PDBsum:3D9L PDBsum:3D9M
PDBsum:3D9N PDBsum:3D9O PDBsum:3D9P ProteinModelPortal:Q9UPN6
SMR:Q9UPN6 STRING:Q9UPN6 PhosphoSite:Q9UPN6 DMDM:30580495
PaxDb:Q9UPN6 PRIDE:Q9UPN6 Ensembl:ENST00000367178
Ensembl:ENST00000417268 GeneID:22828 KEGG:hsa:22828 UCSC:uc003qpz.3
CTD:22828 GeneCards:GC06P155055 HGNC:HGNC:20959 HPA:HPA035602
neXtProt:NX_Q9UPN6 PharmGKB:PA128394587 HOVERGEN:HBG055796
InParanoid:Q9UPN6 KO:K13191 OrthoDB:EOG45MN4V PhylomeDB:Q9UPN6
ChiTaRS:SCAF8 EvolutionaryTrace:Q9UPN6 GenomeRNAi:22828
NextBio:43242 ArrayExpress:Q9UPN6 Bgee:Q9UPN6 CleanEx:HS_RBM16
Genevestigator:Q9UPN6 GermOnline:ENSG00000146426 Uniprot:Q9UPN6
Length = 1271
Score = 119 (46.9 bits), Expect = 0.00092, P = 0.00091
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 205 LDPPEDKTI----TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRP 260
L P KT+ TTL+VG + K T+QDL + F +FG+I S+ ++ + CA++ R
Sbjct: 464 LPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQ 523
Query: 261 AAEAAVEH-SFNKVILGGRRLNIKWGRAQANRGEDT 295
A A++ S +G + + I W N+G T
Sbjct: 524 DAFRALQKLSSGSYKIGSKVIKIAWA---LNKGVKT 556
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 113 (44.8 bits), Expect = 0.00095, P = 0.00095
Identities = 33/102 (32%), Positives = 53/102 (51%)
Query: 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS-----KQQCAFIQYTSRPAAE 263
+ + T +YV NL + T+ DL+ F +FGEI S ++ ++ F+ + AA
Sbjct: 114 KSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAV 173
Query: 264 AAVEHSFNKVILGGRRLNIKWGRAQ--ANRGEDTAELKVRLE 303
A+E N V++ + L++ GRAQ NR ED LK + E
Sbjct: 174 TAIE-KMNGVVVDEKELHV--GRAQRKTNRTED---LKAKFE 209
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 91 (37.1 bits), Expect = 0.00096, P = 0.00096
Identities = 29/94 (30%), Positives = 51/94 (54%)
Query: 196 MARASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ--CA- 252
MA A+ + K+ K++ ++VGNL + Q+LR +F +FG + S ++ ++ C+
Sbjct: 1 MATAAAVAKVG----KSVHRIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSK 56
Query: 253 ---FIQYTSRPAAEAAVEHSFNKVILGGRRLNIK 283
F+ + S A E +E+ K IL G LNI+
Sbjct: 57 GYGFVSFNSLTALEK-IENE-QKHILEGNYLNIQ 88
>UNIPROTKB|B7Z888 [details] [associations]
symbol:SCAF8 "Protein SCAF8" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 EMBL:AL121952 EMBL:AL136976 EMBL:AL591499
UniGene:Hs.591329 HGNC:HGNC:20959 HOVERGEN:HBG055796 ChiTaRS:SCAF8
OMA:YRFPPIE HOGENOM:HOG000154078 EMBL:AK303001 IPI:IPI00871240
SMR:B7Z888 STRING:B7Z888 Ensembl:ENST00000367186 UCSC:uc010kji.3
Uniprot:B7Z888
Length = 1337
Score = 119 (46.9 bits), Expect = 0.00097, P = 0.00097
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 205 LDPPEDKTI----TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRP 260
L P KT+ TTL+VG + K T+QDL + F +FG+I S+ ++ + CA++ R
Sbjct: 530 LPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQ 589
Query: 261 AAEAAVEH-SFNKVILGGRRLNIKWGRAQANRGEDT 295
A A++ S +G + + I W N+G T
Sbjct: 590 DAFRALQKLSSGSYKIGSKVIKIAWA---LNKGVKT 622
>UNIPROTKB|F1SB23 [details] [associations]
symbol:SCAF8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043175 "RNA polymerase core enzyme binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:CU633674
EMBL:FP565558 Ensembl:ENSSSCT00000004499 Uniprot:F1SB23
Length = 1347
Score = 119 (46.9 bits), Expect = 0.00098, P = 0.00098
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 205 LDPPEDKTI----TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRP 260
L P KT+ TTL+VG + K T+QDL + F +FG+I S+ ++ + CA++ R
Sbjct: 542 LPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQ 601
Query: 261 AAEAAVEH-SFNKVILGGRRLNIKWGRAQANRGEDT 295
A A++ S +G + + I W N+G T
Sbjct: 602 DAFRALQKLSSGSYKIGSKVIKIAWA---LNKGVKT 634
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 327 314 0.00081 116 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 94
No. of states in DFA: 616 (65 KB)
Total size of DFA: 243 KB (2131 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 25.66u 0.07s 25.73t Elapsed: 00:00:21
Total cpu time: 25.67u 0.07s 25.74t Elapsed: 00:00:23
Start: Thu Aug 15 12:09:02 2013 End: Thu Aug 15 12:09:25 2013