RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14139
(327 letters)
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 74.6 bits (183), Expect = 1e-17
Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ-------CAFIQYTSRP 260
P+ +T + + V N+ + ++++R+ F FGE+++V + K F+ + ++
Sbjct: 3 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQ 62
Query: 261 AAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291
A+ A + L GRRL ++W ++
Sbjct: 63 DAKKAFNALCHSTHLYGRRLVLEWADSEVTV 93
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 74.2 bits (182), Expect = 2e-17
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKV 273
T+Y G + LT+Q +R F FG+I + + ++ +F+++++ +A A+ N
Sbjct: 19 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS-VNGT 77
Query: 274 ILGGRRLNIKWGRAQANR 291
+ G + WG+ +
Sbjct: 78 TIEGHVVKCYWGKESPDM 95
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 71.8 bits (176), Expect = 1e-16
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 206 DPPEDKTITTLYVGNLG-DKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEA 264
+ +++GNL + + D+ F ++G+I ++ + AF+QY + A A
Sbjct: 8 KTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--HKGFAFVQYVNERNARA 65
Query: 265 AVEHSFNKVILGGRRLNIKWGRAQANR 291
AV + ++ G+ L+I
Sbjct: 66 AVAG-EDGRMIAGQVLDINLAAEPKVN 91
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 68.8 bits (168), Expect = 1e-15
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKV 273
+ L+VGNL +TE+++R F ++G+ V I + FI+ +R AE A + +
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVE-LDNM 67
Query: 274 ILGGRRLNIKWGRAQAN 290
L G++L +++ A+
Sbjct: 68 PLRGKQLRVRFACHSAS 84
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 67.6 bits (165), Expect = 3e-15
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAAEAAVEH 268
+LYVG+L +TE L + F G I S+ + A++ + AE A++
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 269 SFNKVILGGRRLNIKW 284
N ++ G+ + I W
Sbjct: 62 -MNFDVIKGKPVRIMW 76
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 65.7 bits (160), Expect = 1e-14
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAA 262
E T LYV NL +T+ L F ++G I IL + AF++Y R A
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 61
Query: 263 EAAVEHSFNKVILGG-RRLNIKW 284
+ A+ N + GG + L+++
Sbjct: 62 QEAISALNNVIPEGGSQPLSVRL 84
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 66.6 bits (162), Expect = 2e-14
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 207 PPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC---AFIQYTSRPAAE 263
PPE LY+ NL K+T +++ D F ++G IR + + + + A++ Y A+
Sbjct: 3 PPEVNR--ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAK 60
Query: 264 AAVEHSFNKVILGGRRLNIKWGRAQ-ANRGEDTAELKVRLEPVPGLPGALPPPPK 317
A +H + + R L + + A A + DT + + +L+ + G PPK
Sbjct: 61 NACDH-LSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDPPK 114
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 64.6 bits (157), Expect = 4e-14
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC------AFIQYTSRPAAEAAVE 267
T L V L +T+++L F G I + I+ + AF+ +TS ++ A++
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
Query: 268 HSFNKVILGGRRLNIKWGR 286
N + + +RL + + R
Sbjct: 63 V-LNGITVRNKRLKVSYAR 80
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 64.2 bits (156), Expect = 6e-14
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTIL-----SKQQCAFIQYTSRPAAEAAVEHSF 270
L V NL +++ D+++ F +FG ++ + A + + + A A++ +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ-Y 61
Query: 271 NKVILGGRRLNIKW 284
N V L GR +NI+
Sbjct: 62 NGVPLDGRPMNIQL 75
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 64.0 bits (155), Expect = 1e-13
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Query: 206 DPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK--------------QQC 251
DP ED + +YV L D +T DL D F Q G ++ + +
Sbjct: 1 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 60
Query: 252 AFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291
A + Y P A+AAVE F+ G +L + R +
Sbjct: 61 ATVSYEDPPTAKAAVEW-FDGKDFQGSKLKVSLARKKPPM 99
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 63.2 bits (153), Expect = 1e-13
Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVI 274
LY+GNL +T DLR F + +L K AF+ Y + A A+E KV
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVE 62
Query: 275 LGGRRLNIKWGRAQANR 291
L G+ + + + ++ R
Sbjct: 63 LHGKIMEVDYSVSKKLR 79
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 62.5 bits (151), Expect = 2e-13
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ-------CAFIQYTSRPAAEAAVEH 268
+++GNL ++ E+ L D F FG I + + AFI + S A++AA+E
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 269 SFNKVILGGRRLNIKWGRAQANRG 292
N L R + + + + ++G
Sbjct: 61 -MNGQYLCNRPITVSYAFKKDSKG 83
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 62.0 bits (150), Expect = 5e-13
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK----QQCAFIQYTSRPAAEA 264
+D TLYVGNL +TE + F Q G +S ++++ F+++ A A
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 265 AVEHSFNKVILGGRRLNIKWGRAQANR 291
A+ N + G+ + + W +++
Sbjct: 64 ALAA-MNGRKILGKEVKVNWATTPSSQ 89
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 62.0 bits (150), Expect = 5e-13
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 203 PKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQY 256
P + +D T+YVG L +K++E L + F Q G + + + Q F+++
Sbjct: 2 PISERNQD---ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 58
Query: 257 TSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQ 288
S A+ A++ + + L G+ + + A
Sbjct: 59 LSEEDADYAIKI-MDMIKLYGKPIRVNKASAH 89
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 61.1 bits (148), Expect = 9e-13
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC------AFIQYTSRPAAEAAVE 267
TLYVGNL TE+ + + F + G+I+ + + + F++Y SR AE A+
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
Query: 268 HSFNKVILGGRRLNIKWGR 286
+ N L R + W
Sbjct: 68 Y-INGTRLDDRIIRTDWDA 85
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 60.9 bits (147), Expect = 9e-13
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAAEAAVE 267
T L V L +T+++ R F GEI S ++ + F+ Y AE A+
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 268 HSFNKVILGGRRLNIKWGR 286
N + L + + + + R
Sbjct: 63 T-LNGLRLQTKTIKVSYAR 80
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 61.2 bits (148), Expect = 1e-12
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ---CAFIQYTSRPAAEA 264
P +YVGNL + +D+ D FY++G IR + + +++ AF+++ AE
Sbjct: 9 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAED 68
Query: 265 AVEHSFNKVILGGRRLNIKWGRAQANRG 292
AV + G RL +++ R+ G
Sbjct: 69 AVYG-RDGYDYDGYRLRVEFPRSGRGTG 95
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 60.8 bits (147), Expect = 1e-12
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKV 273
T L+VG LG + L F +FG IR++ + A+IQY S AA+AA
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAK-MRGF 76
Query: 274 ILGG--RRLNIKWGRAQANRG 292
LGG RRL + + ++ + G
Sbjct: 77 PLGGPDRRLRVDFAKSGPSSG 97
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 60.4 bits (146), Expect = 1e-12
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ-CAFIQYTSRPAAEAAVEHSFNK 272
+ ++VG +TE +LR+ F Q+G++ V I + AF+ + A++
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG---ED 62
Query: 273 VILGGRRLNIKWGRAQANRG 292
+I+ G ++I + N
Sbjct: 63 LIIKGISVHISNAEPKHNSN 82
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 60.4 bits (146), Expect = 1e-12
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 206 DPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAA 265
D ++ LYV NL +E+ + F + + AF+ +++R A A
Sbjct: 1 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEA 60
Query: 266 VEHSFNKVILGGRRLNIKWGRAQANR 291
++ N +L G + + +
Sbjct: 61 MKA-LNGKVLDGSPIEVTLAKPVDKD 85
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 60.4 bits (146), Expect = 2e-12
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 207 PPEDKT-ITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTIL----SKQQCAFIQYTSRPA 261
P K+ + +++ NL + + L D F FG I S ++ + F+ + ++ A
Sbjct: 1 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 60
Query: 262 AEAAVEHSFNKVILGGRRLNIKWGRAQANR 291
AE A+E N ++L R++ + +++ R
Sbjct: 61 AERAIEK-MNGMLLNDRKVFVGRFKSRKER 89
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 60.6 bits (146), Expect = 2e-12
Identities = 14/84 (16%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 206 DPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAA 265
+ ++V L + + E DL + +FG I V ++ ++ A +++ + +A+
Sbjct: 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKEC 67
Query: 266 VEH-SFNKVILGGRRLNIKWGRAQ 288
V + V + G++ + ++
Sbjct: 68 VTFAADVPVYIAGQQAFFNYSTSK 91
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 60.0 bits (145), Expect = 2e-12
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC---------AFIQYTSRPAAEAAV 266
L++ NL TE+ L+ F + G I+S TI K+ F++Y A+ A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 267 EHSFNKVILGGRRLNIKWGRAQANRGEDTA 296
+ + G +L ++ + R A
Sbjct: 61 KQ-LQGHTVDGHKLEVRI----SERATKPA 85
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 59.7 bits (144), Expect = 4e-12
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 206 DPPEDKTI---TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ-CAFIQYTSRPA 261
DP K + TL NL +TE +L++ F EIR V+ K + A+I++ S
Sbjct: 6 DPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEAD 65
Query: 262 AEAAVEHSFNKVILGGRRLNIKWGRAQ-ANRG 292
AE +E + GR +++ + + RG
Sbjct: 66 AEKNLEE-KQGAEIDGRSVSLYYTGEKGGTRG 96
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 59.2 bits (143), Expect = 4e-12
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAAEAAVE 267
+ L V L K TEQDL+++F FGE+ V + + F+++T +
Sbjct: 9 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 68
Query: 268 HSFNKVILGGRRLNIKWGRAQANR 291
+ ++ GR + K ++ ++
Sbjct: 69 ---QRHMIDGRWCDCKLPNSKQSQ 89
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 59.3 bits (143), Expect = 5e-12
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPA 261
PE++ T++ L ++ +DL D F G++R V I+S + A++++ +
Sbjct: 13 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQS 72
Query: 262 AEAAVEHSFNKVILGGRRLNIKWGRAQANR 291
A+ L G + ++ +A+ NR
Sbjct: 73 VPLAIG--LTGQRLLGVPIIVQASQAEKNR 100
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 58.1 bits (140), Expect = 8e-12
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKV 273
TLYV +T LR F FG I +++ + CAF+ Y +A+ AV N
Sbjct: 6 NTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE-LNGT 62
Query: 274 ILGGRRLNIKWGRAQ 288
+ +L + R Q
Sbjct: 63 QVESVQLKVNIARKQ 77
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 58.5 bits (141), Expect = 8e-12
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 206 DPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTI----LSKQQCAFIQYTSRPA 261
+ T L+V N+ + + DLR F QFG+I V I + F+ + +
Sbjct: 4 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 63
Query: 262 AEAAVEHSFNKVILGGRRLNIKWGRAQAN 290
A+ A E + ++ GR++ + A+
Sbjct: 64 ADRAREK-LHGTVVEGRKIEVNNATARVM 91
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 58.5 bits (141), Expect = 9e-12
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 211 KTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRPAAEA 264
T LYVG L +++ ++ L F FG+I + I + AF+++ A A
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62
Query: 265 AVEHSFNKVILGGRRLNIKWGRAQANR 291
A+++ N+ L GR + + + +
Sbjct: 63 AIDN-MNESELFGRTIRVNLAKPMRIK 88
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 58.1 bits (140), Expect = 9e-12
Identities = 13/75 (17%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAAEAAVEHS 269
+++G L + T++ LR++F QFGE++ ++ F+ + + + +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ- 61
Query: 270 FNKVILGGRRLNIKW 284
++ L + ++ K
Sbjct: 62 -SRHELDSKTIDPKV 75
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 58.6 bits (141), Expect = 1e-11
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 199 ASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCA 252
+ + + PE L++ +L + +QDL F FG + S + +
Sbjct: 7 GAAGSQKEGPEG---ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFG 63
Query: 253 FIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291
F+ Y + +A+AA++ N +G +RL ++ R++ +
Sbjct: 64 FVSYDNPVSAQAAIQS-MNGFQIGMKRLKVQLKRSKNDS 101
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 58.5 bits (141), Expect = 1e-11
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC--------AFIQYTSRPAAEAA 265
L++G + +++ + + E I+ AF++Y S AA A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 266 VEH-SFNKVILGGRRLNIKWGRAQANRGEDTAE 297
++ L G ++ + W + + ED E
Sbjct: 62 RRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVME 94
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 57.8 bits (139), Expect = 1e-11
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAAEAAVE 267
LYV L +T+++L F Q+G I + IL Q FI++ R AE A++
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 268 HSFNKVILG-GRRLNIKW 284
+ G + +K+
Sbjct: 67 GLNGQKPSGATEPITVKF 84
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 58.6 bits (141), Expect = 1e-11
Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 206 DPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC------AFIQYTSR 259
DP D+++ +++VGN+ + TE+ L+D F + G + S ++ ++ F +Y +
Sbjct: 1 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 60
Query: 260 PAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGE 293
A +A+ + N GR L + ++ N+ E
Sbjct: 61 ETALSAMRN-LNGREFSGRALRVDNAASEKNKEE 93
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 57.3 bits (138), Expect = 1e-11
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQ------QCAFIQYTSRPAAEAAVEHS 269
++VG L E+ +R++F FGE+ S+ + FI + + +E
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 270 FNKVILGGRRLNIK 283
++ +G + IK
Sbjct: 62 YHN--VGLSKCEIK 73
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 57.8 bits (139), Expect = 2e-11
Identities = 10/76 (13%), Positives = 27/76 (35%)
Query: 207 PPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAV 266
+ G LG+ ++ L + G + ++ + + +F +Y + ++ A
Sbjct: 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAY 73
Query: 267 EHSFNKVILGGRRLNI 282
K ++ I
Sbjct: 74 VTLNGKEVVDDLGQKI 89
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 57.8 bits (139), Expect = 2e-11
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 206 DPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSR 259
E + L++G L + TE+ LR+++ Q+G++ ++ F+ ++S
Sbjct: 13 KKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 72
Query: 260 PAAEAAVEHSFNKVILGGRRLNIKWGRAQANRG 292
+AA+ + GR + K A+ G
Sbjct: 73 AEVDAAMA--ARPHSIDGRVVEPKRAVAREESG 103
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 56.6 bits (136), Expect = 3e-11
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAAEAAVE 267
L V L TE+DLR+ F ++G I V+I+ QQ AF+ + + A+ A E
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 268 HSFNKVILGGRRLNI 282
N + L GRR+ +
Sbjct: 70 R-ANGMELDGRRIRV 83
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 56.6 bits (136), Expect = 3e-11
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSV-------TILSKQQCAFIQYTSRPAAEAAVEH 268
L++G L + L + +++ FG +++ T LSK AF +Y + A+
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK-GYAFCEYVDINVTDQAIAG 62
Query: 269 SFNKVILGGRRLNIKWGRAQAN 290
N + LG ++L ++ A
Sbjct: 63 -LNGMQLGDKKLLVQRASVGAK 83
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 56.6 bits (136), Expect = 5e-11
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAAEAAVE 267
L+V NL +E+DL F +G + + AF+ + A A
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 268 HSFNKVILGGRRLNIKWGRAQANRGE 293
+ + GR L++ + +
Sbjct: 69 E-VDGQVFQGRMLHVLPSTIKKEASQ 93
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 55.5 bits (133), Expect = 6e-11
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAAEAAVEHS 269
++VG L T +D++ +F QFG++ ++ + F+ + S E E
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-- 59
Query: 270 FNKVILGGRRLNIKW 284
+ + + + K
Sbjct: 60 IHFHEINNKMVECKK 74
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 55.8 bits (134), Expect = 7e-11
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAAEAAVE 267
T+ V NL + E DL++ F FG I + + + AFI + R A A+
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 268 HSFNKVILGGRRLNIKWGRAQAN 290
+ LN++W + N
Sbjct: 69 G-VSGFGYDHLILNVEWAKPSTN 90
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 55.1 bits (132), Expect = 1e-10
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 207 PPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC------AFIQYTSRP 260
P L+V ++ ++ E ++++ F +GEI+++ + ++ A ++Y +
Sbjct: 1 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 60
Query: 261 AAEAAVEHSFNKVILGGRRLNIKW 284
A AA E N + G+ + + W
Sbjct: 61 QALAAKEA-LNGAEIMGQTIQVDW 83
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 55.6 bits (133), Expect = 2e-10
Identities = 15/83 (18%), Positives = 27/83 (32%)
Query: 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEH 268
E + G+L D+ +DL F GEI+ + + + I + +
Sbjct: 7 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAK 66
Query: 269 SFNKVILGGRRLNIKWGRAQANR 291
N L R + W +
Sbjct: 67 DANNGNLQLRNKEVTWEVLEGEV 89
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 54.4 bits (130), Expect = 2e-10
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTIL--SKQQCAFIQYTSRPAAEAAVEHSFN 271
TL++ N+ ++E+DL+ F G + ++ A IQ S A A+ N
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 70
Query: 272 KVILGGRRLNIKWGRAQ 288
+ L + + ++
Sbjct: 71 HDLGENHHLRVSFSKST 87
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 54.7 bits (131), Expect = 2e-10
Identities = 15/85 (17%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 214 TTLYVGNLGDKLTEQDLRDH----FYQFGEIRSVTILSKQQ---CAFIQYTSRPAAEAAV 266
T+Y+ NL +K+ + +L+ F +FG+I + + + AF+ + +A A+
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
Query: 267 EHSFNKVILGGRRLNIKWGRAQANR 291
+ + I++ + ++
Sbjct: 64 RS-MQGFPFYDKPMRIQYAKTDSDI 87
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 53.8 bits (129), Expect = 2e-10
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAAEAAVEHS 269
+++G L T++DL+D+F +FGE+ T+ F+ + + + ++
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ- 60
Query: 270 FNKVILGGRRLNIK 283
+ L G+ ++ K
Sbjct: 61 -KEHKLNGKVIDPK 73
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 54.9 bits (131), Expect = 4e-10
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 9/124 (7%)
Query: 174 PLADQNIKDRYYGVNDPVAEKLMARASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDH 233
PL Q D Y + + P PE + L V + + E LR
Sbjct: 5 PLVSQY--DPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQL 62
Query: 234 FYQFGEIRSVTILSKQQC------AFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRA 287
F ++G I SV I+ ++ F+++ S +A+ A+ N + +RL + +
Sbjct: 63 FERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG-LNGFNILNKRLKVALAAS 121
Query: 288 QANR 291
R
Sbjct: 122 GHQR 125
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 54.0 bits (129), Expect = 4e-10
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 206 DPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC------AFIQYTSR 259
+D T T ++VG L T+ LR +F FG+I +++ +Q F+ R
Sbjct: 3 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 260 PAAEAAVEHSFNKVILGGRRLNIKWGRAQAN 290
AAE A + N +I GR+ N+ A
Sbjct: 63 AAAERACKD-PNPII-DGRKANVNLAYLGAK 91
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 54.0 bits (129), Expect = 5e-10
Identities = 10/108 (9%), Positives = 26/108 (24%), Gaps = 17/108 (15%)
Query: 214 TTLYVGNLGDKLTE-----QDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEH 268
+ L D + F + + + + I +++ +A A
Sbjct: 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLR 65
Query: 269 SFNKVILGGRRLNIKWGRAQANRGEDTAELKVRLEPVPGLPGALPPPP 316
+K G+ + + + + P P
Sbjct: 66 -LHKTEFLGKEMKLYFAQTLHIG-----------SSHLAPPNPDKSGP 101
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 53.9 bits (129), Expect = 6e-10
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 208 PEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS--KQQCAFIQYTSRPAAEAA 265
+ + V NL +T L F +FG + + + Q A +QY +A+ A
Sbjct: 2 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA 61
Query: 266 VEHSFNKVIL-GGRRLNIKWGRAQ 288
+ I L I + +
Sbjct: 62 KLSLDGQNIYNACCTLRIDFSKLT 85
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 52.9 bits (126), Expect = 7e-10
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIR------SVTILSKQQCAFIQYTSRPAAEAAVE 267
TL++ N T++++RD + S+ + ++ A+I TS+ A VE
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 268 HSFNKVILGGRRLNIKWGR 286
N + + G L K
Sbjct: 62 K-LNGLKIEGYTLVTKVSN 79
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 51.6 bits (123), Expect = 2e-09
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 206 DPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQ------QCAFIQYTSR 259
+P + + L++G L + T++ LR HF Q+G + ++ F+ Y +
Sbjct: 2 EPEQLRK---LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 58
Query: 260 PAAEAAVEHSFNKVILGGRRLNIKW 284
+AA+ + GR + K
Sbjct: 59 EEVDAAMN--ARPHKVDGRVVEPKR 81
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 51.7 bits (123), Expect = 2e-09
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC-----------AFIQYTSRPAAE 263
LYVGN+ +TE+ + D F + +T AF+++ S
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 264 AAVEHSFNKVILGGRRLNIKWGR 286
A+ F+ +I G+ L I+
Sbjct: 63 QAMA--FDGIIFQGQSLKIRRPH 83
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 52.1 bits (124), Expect = 2e-09
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 214 TTLYVGNLG-DKLTEQDLRDHFYQFGEIRSVTI-LSKQQCAFIQYTSRPAAEAAVEHSFN 271
+ L V NL +++T Q L F +G+++ V I +K++ A +Q A+ A+ H N
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSH-LN 61
Query: 272 KVILGGRRLNIKWGRAQ 288
L G+ + I + Q
Sbjct: 62 GHKLHGKPIRITLSKHQ 78
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 52.0 bits (124), Expect = 2e-09
Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 14/101 (13%)
Query: 197 ARASTMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQ 250
+ S +PK PP T ++GNL +TE+ +++ F +
Sbjct: 5 SSGSRLPK-SPP-----YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKG 58
Query: 251 CAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291
+ ++ + +A+ N+ LG +R+ + ++
Sbjct: 59 FGYAEFEDLDSLLSALS--LNEESLGNKRIRVDVADQAQDK 97
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 51.7 bits (123), Expect = 2e-09
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 207 PPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAV 266
PP ++ + V L + QDL+DH + G++ + K ++Y + E A+
Sbjct: 9 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADV-QKDGMGMVEYLRKEDMEYAL 67
Query: 267 EHSFNKVILGGRRLNIKWGRAQANRG 292
+ + R R
Sbjct: 68 RK-LDDTKFRSHEGETSYIRVYPERS 92
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 51.3 bits (122), Expect = 2e-09
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKV 273
+ + V NL Q++ D + ++ + ++ AF+ + A+ A++ F++
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYD-LKYCYVDRNKRTAFVTLLNGEQAQNAIQM-FHQY 63
Query: 274 ILGGRRLNIKWGRAQA 289
G+ L ++ A
Sbjct: 64 SFRGKDLIVQLQPTDA 79
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 51.4 bits (122), Expect = 3e-09
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 207 PPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILS------KQQCAFIQYTSRP 260
P + T+++ NL E+ L + QFG+++ V ++ + CAF Q+ ++
Sbjct: 2 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 61
Query: 261 AAEAAVE-----HSFNKVILGGRRLNIKWGR 286
AA+ + + L GR+L +
Sbjct: 62 AAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 92
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 50.1 bits (119), Expect = 8e-09
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 215 TLYVGNLG-DKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEH-SFNK 272
+++ + K L FG I + IL+K AFI+ + A+AAV++ +
Sbjct: 10 VVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTP 69
Query: 273 VILGGRRLNIKWGRAQANR 291
++ G+ + + +
Sbjct: 70 ALVFGKPVRVHLSQKYKRI 88
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 49.3 bits (117), Expect = 1e-08
Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK-----QQCAFIQYTSRPAAE 263
D ++Y+ T D+++ G++ ++ + + F+ + S +A+
Sbjct: 2 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAK 61
Query: 264 AAVEHSFNKVILGGRRLNIKW 284
VE L I +
Sbjct: 62 KFVET--PGQKYKETDLLILF 80
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 49.4 bits (117), Expect = 2e-08
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ-----CAFIQYTSRPAAEAAVEH 268
LY+ NL ++TE+DL F +F E + I + H
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 269 SFNKVILGGRRLNIKWGRAQANR 291
N L G+ L I++G+ + R
Sbjct: 79 LVNGYKLYGKILVIEFGKNKKQR 101
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 49.3 bits (117), Expect = 2e-08
Identities = 10/80 (12%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 210 DKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTIL-----SKQQCAFIQYTSRPAAEA 264
++ + + D+ E+ + ++GE+ + + ++++ AE
Sbjct: 24 RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEK 83
Query: 265 AVEHSFNKVILGGRRLNIKW 284
AV N G+ ++ +
Sbjct: 84 AVID-LNNRWFNGQPIHAEL 102
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 48.9 bits (116), Expect = 2e-08
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAAEAAVE 267
T + V N+ ++ ++ D FY + I L + A + + SR A AAV
Sbjct: 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 69
Query: 268 HSFNKVILGGRRLNIKWG 285
N +G R++ + G
Sbjct: 70 D-LNDRPIGSRKVKLVLG 86
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 48.2 bits (114), Expect = 3e-08
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 212 TITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSRPAAEAA 265
T+ ++VG + + E LRD+F Q+G+I + I++ + AF+ + + +
Sbjct: 1 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 60
Query: 266 VEHSFNKVILGGRRLNIK 283
V + G ++
Sbjct: 61 VI--QKYHTVNGHNCEVR 76
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.0 bits (111), Expect = 8e-08
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 215 TLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAAEAAVEH 268
L+VG L EQ L F ++G+I V ++ ++ F+ + + A+ A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 269 SFNKVILGGRRLNIKWGRAQANR 291
N + GR++ + ++
Sbjct: 67 -MNGKSVDGRQIRVDQAGKSSDN 88
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 46.0 bits (108), Expect = 2e-07
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 206 DPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIR-SVTILSKQQCAFIQYTSRPAAEA 264
PP L++ NL ++ E L F QF + + ++ AF+++T+ + A
Sbjct: 5 QPPN----QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNA 60
Query: 265 AVEHSFNKVILGGRRLNIKWGR 286
A E I + I + +
Sbjct: 61 AKEALQGFKITPTHAMKITFAK 82
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 44.8 bits (105), Expect = 4e-07
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC----AFIQYTSRPAAEAAVEHS 269
TT+ V NL + + +F G I V + + A I++ A AA+ +
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKT 60
Query: 270 FNKVILGGRRLNIK 283
+G + +
Sbjct: 61 HKV--VGQNEIIVS 72
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 45.2 bits (106), Expect = 4e-07
Identities = 16/84 (19%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 206 DPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAA 265
D + L++ L ++TE ++ FG++ ++ +L + AF++ + AA
Sbjct: 1 DKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITM 60
Query: 266 VEH-SFNKVILGGRRLNIKWGRAQ 288
V + S L + + I++ +
Sbjct: 61 VNYYSAVTPHLRNQPIYIQYSNHK 84
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 45.7 bits (107), Expect = 5e-07
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 1/85 (1%)
Query: 209 EDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEH 268
++ T + NL ++++ F +FG + V + A +++ A A H
Sbjct: 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRH 65
Query: 269 SFNKVILGGRRLNIKWGRAQANRGE 293
L ++W
Sbjct: 66 -LAYSKFHHVPLYLEWAPIGVFGAA 89
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 44.0 bits (103), Expect = 8e-07
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAAEAAVEHS 269
LY+ L T+QDL +G+I S + + F+ + S AA+ AV
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA- 59
Query: 270 FNKVILGGRRL 280
+ +
Sbjct: 60 LKASGVQAQMA 70
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 46.1 bits (108), Expect = 1e-06
Identities = 21/153 (13%), Positives = 52/153 (33%), Gaps = 11/153 (7%)
Query: 145 HICSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMARASTMPK 204
+ V + + ++ A N + ++ ++R
Sbjct: 32 TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR---EDS 88
Query: 205 LDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTS 258
P T+ ++VG + + E LRD+F Q+G+I + I++ + AF+ +
Sbjct: 89 QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 148
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGRAQANR 291
+ + V + G ++ ++
Sbjct: 149 HDSVDKIVIQ--KYHTVNGHNCEVRKALSKQEM 179
Score = 45.8 bits (107), Expect = 1e-06
Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 206 DPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ---------CAFIQY 256
+P + + L++G L + T++ LR HF Q+G + ++ +
Sbjct: 2 EPEQLRK---LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 58
Query: 257 TSRPAAEAAVEHSFNKVILGGRRLNIKWGRAQANRGEDTAELKVR 301
AA A H + ++ +R + + ++ V
Sbjct: 59 EEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVG 103
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 44.2 bits (103), Expect = 1e-06
Identities = 12/87 (13%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 205 LDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQ-----QCAFIQYTSR 259
++ E T L++GNL + +L+ + + ++ + + ++ + S
Sbjct: 5 VEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESA 64
Query: 260 PAAEAAVEHSFNKVILGGRRLNIKWGR 286
E A+E + + G + ++ +
Sbjct: 65 EDLEKALE--LTGLKVFGNEIKLEKPK 89
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 44.0 bits (103), Expect = 1e-06
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 204 KLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGE-----IRSVTILSKQQCAFIQYTS 258
++ +++ T LY+ NL + EQ+L + FG+ I + + + F + S
Sbjct: 9 QMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMES 68
Query: 259 RPAAEAAVEHSFNKVILGGRRLNIKWGR 286
EA + H FN +
Sbjct: 69 TEKCEAVIGH-FNGKFIKTPPGVSAPTE 95
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 43.0 bits (101), Expect = 2e-06
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKV 273
T + V L F Q+G I + + I+Y S+ A A+ ++
Sbjct: 5 TWVTVFGFPQASASYILL-QFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRI 62
Query: 274 ILGGRRLNIKWGRAQA 289
+ +K +
Sbjct: 63 FGESIMIGVKPCIDKN 78
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 42.8 bits (100), Expect = 3e-06
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 214 TTLYVGNLGDKLT-EQDLRDHFYQFGEIRSVTILS-------KQQCAFIQYTSRPAAEAA 265
+ + NL +L E LR+ F FG I + I + CAF+ + ++ +AE A
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 266 VEHSFNKVILGGRRLNIKWGR 286
++ N+ +LG R +++
Sbjct: 65 LQ--MNRSLLGNREISVSLAD 83
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 41.7 bits (97), Expect = 8e-06
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 206 DPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQC----AFIQYTSRPA 261
+ T +++ L + TE D+ + F +R + A +++ +
Sbjct: 8 SSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHED 67
Query: 262 AEAAVEHSFNKVILGGRRLNIKWGRAQANRG 292
A AA+ +K + R + + G
Sbjct: 68 AVAAMAK--DKANMQHRYVELFLNSTAGTSG 96
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 38.7 bits (89), Expect = 5e-05
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVIL 275
+ + L +T Q++ D + E++ + + AF+ + AEAA+ F++ L
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAEAAINT-FHQSRL 58
Query: 276 GGRRLNIKWGRAQA 289
R L+++ A
Sbjct: 59 RERELSVQLQPTDA 72
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 38.8 bits (89), Expect = 9e-05
Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 207 PPEDKTITTLYVGNLGD-KLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAA 265
+ + +++ NL ++ + +G+I++ ++ + AFI+ +R A A
Sbjct: 12 DQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAM 71
Query: 266 VEH-SFNKVILGGRRLNIKWGRAQAN 290
V+H + GR + +
Sbjct: 72 VDHCLKKALWFQGRCVKVDLSEKYKK 97
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 37.2 bits (85), Expect = 3e-04
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 216 LYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQCAFIQYTSRPAAEAAVEHSFNKVIL 275
+ V L + QDL+DH + G++ + + +++ + AV +
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADV-YRDGTGVVEFVRKEDMTYAVRK-LDNTKF 60
Query: 276 GGRRLNIKWGRAQANRG 292
+ R + +
Sbjct: 61 RSHEGETAYIRVKVDGP 77
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 35.2 bits (80), Expect = 0.002
Identities = 10/84 (11%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 214 TTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSKQQ------CAFIQYTSRPAAEAAVE 267
++ N+ +T+ D+ + + A +Q+ + A +
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 68
Query: 268 HSFNKVILGGRRLNIKWGRAQANR 291
++ L GR + + R
Sbjct: 69 --LHRKKLNGREAFVHVVTLEDMR 90
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 34.8 bits (79), Expect = 0.002
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
Query: 215 TLYVGNLGDKLTEQDLRDHFY---QFGEIRSVTILSKQQ---------CAFIQYTSRPAA 262
++V L +L + ++ +FG+I V I + A++ Y A
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 263 EAAVEHSFNKVILGGRRL 280
A++ N V++ GR L
Sbjct: 70 LRAIQC-VNNVVVDGRTL 86
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing
protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId:
9606]}
Length = 29
Score = 32.9 bits (75), Expect = 0.002
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 143 RPHICSFWVKGECRRGEECPYRH 165
+ +C F++ G C R E CPY H
Sbjct: 5 KRELCKFYITGFCARAENCPYMH 27
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 33.3 bits (75), Expect = 0.009
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 200 STMPKLDPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAF 253
S+ + P+ + + L +++++ F + + L AF
Sbjct: 2 SSGSSGNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAF 61
Query: 254 IQYTSRPAAEAAVEHSFNKVILGGRRLNIKW 284
+Q+ S+ AE A++ +K +G R + I
Sbjct: 62 VQFASQEIAEKALK--KHKERIGHRYIEIFK 90
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 28.9 bits (64), Expect = 0.13
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 12/57 (21%)
Query: 25 KECKICARPFTVFRWCPGARMRFKKTEVCQTCARLK----------NVCQTCLLDLE 71
+ C C + F+V R C C+ VC C DL+
Sbjct: 9 QNCMACGKGFSVTVRRHHCRQCGN--IFCAECSAKNALTPSSKKPVRVCDACFNDLQ 63
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 28.0 bits (62), Expect = 0.19
Identities = 11/47 (23%), Positives = 13/47 (27%), Gaps = 12/47 (25%)
Query: 27 CKICARPFTVFRW---CPGARMRFKKTEVCQTCARLKN----VCQTC 66
CK C F C K C TC+ +C C
Sbjct: 3 CKSCGAHFANTARKQTC-----LDCKKNFCMTCSSQVGNGPRLCLLC 44
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 26.6 bits (59), Expect = 0.46
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 135 TTPYYKRNRPHICSFWVK-GECRRGEECPYRH 165
T+ YK +C + + G CR G +C + H
Sbjct: 3 TSSRYKTE---LCRTYSESGRCRYGAKCQFAH 31
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 27.7 bits (61), Expect = 0.49
Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 14/61 (22%)
Query: 25 KECKICARPFTVFRWCPGARMRFKKTEVCQTCARLK------------NVCQTCLLDLEY 72
+ C C FT R + C C + VC C L+
Sbjct: 14 RVCHRCRVEFTFTNRKHHCR-NCGQV-FCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR 71
Query: 73 G 73
G
Sbjct: 72 G 72
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.6 bits (59), Expect = 0.53
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 146 ICSFWV-KGECRRGEECPYRH 165
+C + G C+ GE+C + H
Sbjct: 8 LCRPFEESGTCKYGEKCQFAH 28
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 27.5 bits (60), Expect = 0.88
Identities = 10/85 (11%), Positives = 30/85 (35%), Gaps = 8/85 (9%)
Query: 206 DPPEDKTITTLYVGNLGDKLTEQDLRDHFYQFGEIRSVTILSK------QQCAFIQYTSR 259
+ +Y+ L + + + D F + + ++ F+++ +
Sbjct: 11 SRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNE 70
Query: 260 PAAEAAVEHSFNKVILGGRRLNIKW 284
+AA+ +K +G R + +
Sbjct: 71 ADYKAALC--RHKQYMGNRFIQVHP 93
>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141
{Enterococcus faecalis [TaxId: 1351]}
Length = 147
Score = 27.9 bits (61), Expect = 0.98
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 251 CAFIQYTSRPAAEAAVEHSFNKVILGGRRLNIKWG 285
+ Y +R AA V N ++ + N +
Sbjct: 9 EETLTYQTRYAAYIIVSKPENNTMVLVQAPNGAYF 43
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein
19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 26.2 bits (57), Expect = 2.3
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 13/58 (22%)
Query: 25 KECKICARPFTVFRWCPGARMRFKKTEVCQTCARLK-----------NVCQTCLLDLE 71
C CA FT+F+ G + + C C VC+ C L
Sbjct: 10 SRCYGCAVKFTLFKKEYGCKNCGR--AFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 34
Score = 24.2 bits (53), Expect = 2.6
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 137 PYYKRNRPHIC-SFWVKGECRRGEECPYRH 165
P YK +C +F G C G C + H
Sbjct: 4 PKYKT---ELCRTFHTIGFCPYGPRCHFIH 30
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing
protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 24.9 bits (54), Expect = 3.1
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 147 CSFWVKG-ECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVND 189
C + C G++C + H+ T+ L D+ + D +
Sbjct: 3 CKLYHTTGNCINGDDCMFSHDPLTEETRELLDKMLADDAEAGAE 46
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 24.2 bits (52), Expect = 7.0
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 12/41 (29%)
Query: 26 ECKICARPFTVFRWCPGARMRFKKTEVCQTCARLKNVCQTC 66
C IC++ F++ C++C + CQ
Sbjct: 7 ACMICSKKFSLLNRKHH----------CRSCGGV--FCQEH 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.416
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,271,858
Number of extensions: 61347
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 100
Length of query: 327
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 241
Effective length of database: 1,226,816
Effective search space: 295662656
Effective search space used: 295662656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.8 bits)