Query psy1414
Match_columns 551
No_of_seqs 320 out of 682
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 20:31:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00252 histone H2A; Provisio 100.0 2.4E-32 5.1E-37 247.6 8.5 91 124-216 22-114 (134)
2 PLN00154 histone H2A; Provisio 100.0 2.6E-32 5.7E-37 248.1 8.1 90 124-216 35-125 (136)
3 PLN00153 histone H2A; Provisio 100.0 3.4E-32 7.4E-37 246.2 8.3 91 124-216 21-111 (129)
4 PLN00157 histone H2A; Provisio 100.0 3.7E-32 8E-37 246.8 8.0 91 124-216 23-113 (132)
5 smart00414 H2A Histone 2A. 100.0 5.2E-32 1.1E-36 239.3 8.6 94 120-216 3-96 (106)
6 PTZ00017 histone H2A; Provisio 100.0 4.1E-32 8.9E-37 247.3 8.1 91 124-216 24-114 (134)
7 PLN00156 histone H2AX; Provisi 100.0 8.2E-32 1.8E-36 246.0 8.4 91 124-216 26-116 (139)
8 KOG1756|consensus 100.0 4.7E-31 1E-35 235.7 7.9 96 118-216 19-114 (131)
9 KOG3518|consensus 100.0 3.2E-30 6.8E-35 262.2 14.0 180 299-522 117-304 (521)
10 cd00074 H2A Histone 2A; H2A is 100.0 2.8E-30 6E-35 231.3 8.6 91 124-216 17-107 (115)
11 COG5262 HTA1 Histone H2A [Chro 100.0 2.2E-30 4.8E-35 227.9 7.0 96 116-214 16-111 (132)
12 KOG1757|consensus 100.0 2.2E-29 4.7E-34 220.0 4.0 92 119-214 23-115 (131)
13 smart00325 RhoGEF Guanine nucl 99.9 2.1E-24 4.6E-29 202.5 13.0 177 306-519 1-178 (180)
14 cd00160 RhoGEF Guanine nucleot 99.9 6E-24 1.3E-28 199.6 13.3 175 305-519 3-180 (181)
15 KOG3519|consensus 99.9 4.1E-22 8.9E-27 227.5 11.1 182 305-523 339-523 (756)
16 PF00621 RhoGEF: RhoGEF domain 99.8 5.8E-21 1.3E-25 177.3 11.6 178 306-521 1-180 (180)
17 KOG4240|consensus 99.8 1.4E-18 3E-23 198.4 13.2 208 270-525 584-815 (1025)
18 KOG2996|consensus 99.7 4.3E-16 9.2E-21 167.9 12.5 173 306-519 201-373 (865)
19 KOG0689|consensus 99.5 3E-14 6.6E-19 153.3 5.6 173 306-524 66-242 (448)
20 PLN00155 histone H2A; Provisio 99.5 2.3E-14 5E-19 113.2 3.0 38 124-161 21-58 (58)
21 KOG4424|consensus 99.4 7.7E-13 1.7E-17 143.6 13.8 169 306-522 70-242 (623)
22 KOG2070|consensus 99.4 4.5E-12 9.8E-17 135.3 15.7 178 300-519 98-278 (661)
23 KOG4305|consensus 99.4 1.1E-12 2.4E-17 151.3 8.0 181 304-522 337-523 (1029)
24 KOG3523|consensus 99.3 1.7E-11 3.8E-16 133.7 10.1 173 303-513 258-432 (695)
25 PF00125 Histone: Core histone 99.2 2.4E-11 5.3E-16 100.4 4.6 70 124-193 5-75 (75)
26 KOG1054|consensus 99.1 7.1E-11 1.5E-15 128.5 4.7 71 12-82 757-840 (897)
27 KOG3522|consensus 99.0 1.3E-09 2.9E-14 122.8 10.3 159 306-519 4-164 (925)
28 KOG3521|consensus 99.0 3.3E-09 7.1E-14 117.0 13.1 169 304-507 179-354 (846)
29 KOG3520|consensus 98.9 1.5E-08 3.2E-13 118.3 13.9 188 301-523 389-581 (1167)
30 COG5247 BUR6 Class 2 transcrip 98.5 1.2E-07 2.6E-12 82.8 5.5 76 126-201 22-97 (113)
31 COG5422 ROM1 RhoGEF, Guanine n 98.2 4.7E-06 1E-10 94.9 10.5 187 300-523 482-672 (1175)
32 KOG1052|consensus 98.1 3.6E-06 7.9E-11 95.4 5.3 70 13-82 539-619 (656)
33 smart00325 RhoGEF Guanine nucl 98.0 1.3E-05 2.8E-10 75.2 6.6 65 229-293 1-66 (180)
34 KOG1659|consensus 98.0 1.2E-05 2.5E-10 79.0 5.7 76 125-200 11-86 (224)
35 cd00160 RhoGEF Guanine nucleot 97.9 2E-05 4.3E-10 74.1 6.3 65 228-292 3-68 (181)
36 KOG3531|consensus 97.8 2E-06 4.4E-11 97.4 -2.3 168 306-510 537-711 (1036)
37 PF00808 CBFD_NFYB_HMF: Histon 97.6 0.0001 2.2E-09 59.6 5.6 64 127-190 2-65 (65)
38 PF00621 RhoGEF: RhoGEF domain 97.4 0.00022 4.7E-09 66.2 5.2 61 229-289 1-62 (180)
39 KOG4440|consensus 96.9 0.00018 3.9E-09 80.0 -0.5 91 12-108 771-873 (993)
40 KOG1053|consensus 96.9 0.001 2.2E-08 76.7 5.0 51 12-65 772-822 (1258)
41 smart00803 TAF TATA box bindin 96.8 0.0033 7.1E-08 51.5 5.7 64 127-191 2-65 (65)
42 KOG3524|consensus 96.7 0.0038 8.1E-08 70.7 7.8 169 304-519 386-558 (850)
43 KOG3519|consensus 96.4 0.0022 4.7E-08 74.8 3.7 65 229-293 340-405 (756)
44 COG2036 HHT1 Histones H3 and H 96.3 0.0071 1.5E-07 52.8 4.9 67 124-191 16-82 (91)
45 KOG3518|consensus 95.9 0.022 4.9E-07 60.0 7.5 69 219-287 114-185 (521)
46 cd00076 H4 Histone H4, one of 95.8 0.019 4.2E-07 49.6 5.5 64 128-192 14-77 (85)
47 PLN00035 histone H4; Provision 95.7 0.02 4.4E-07 51.1 5.5 64 128-192 30-93 (103)
48 smart00079 PBPe Eukaryotic hom 94.9 0.015 3.4E-07 51.8 2.0 34 12-45 99-132 (134)
49 cd07981 TAF12 TATA Binding Pro 94.5 0.086 1.9E-06 43.9 5.6 66 128-193 2-67 (72)
50 smart00417 H4 Histone H4. 94.4 0.071 1.5E-06 45.0 4.7 62 127-189 13-74 (74)
51 KOG3520|consensus 94.3 0.58 1.3E-05 56.5 13.8 134 227-411 392-526 (1167)
52 PTZ00015 histone H4; Provision 94.0 0.1 2.2E-06 46.6 5.3 64 127-191 30-93 (102)
53 KOG4424|consensus 94.0 0.1 2.2E-06 58.5 6.3 60 227-287 68-127 (623)
54 KOG3523|consensus 93.5 0.12 2.6E-06 58.2 5.8 160 209-374 244-440 (695)
55 cd07979 TAF9 TATA Binding Prot 91.9 0.27 5.8E-06 44.8 4.9 62 131-193 5-66 (117)
56 KOG1657|consensus 90.6 0.22 4.8E-06 50.7 3.3 78 124-201 71-148 (236)
57 cd08048 TAF11 TATA Binding Pro 89.2 1.1 2.3E-05 38.9 5.9 64 127-191 16-82 (85)
58 COG5208 HAP5 CCAAT-binding fac 86.9 1.1 2.4E-05 44.9 5.2 77 125-201 107-183 (286)
59 cd08050 TAF6 TATA Binding Prot 86.9 0.94 2E-05 48.4 5.2 60 141-201 12-71 (343)
60 PF02969 TAF: TATA box binding 85.9 1.7 3.8E-05 35.9 5.1 64 127-191 3-66 (66)
61 PLN00158 histone H2B; Provisio 85.6 1.6 3.5E-05 39.9 5.2 62 130-191 30-91 (116)
62 KOG4305|consensus 85.5 0.43 9.4E-06 57.1 1.9 86 228-314 338-445 (1029)
63 smart00428 H3 Histone H3. 84.4 2.5 5.4E-05 38.1 5.7 75 115-190 18-98 (105)
64 smart00427 H2B Histone H2B. 83.1 2.4 5.1E-05 37.1 4.9 60 132-191 6-65 (89)
65 KOG4240|consensus 82.8 2.2 4.7E-05 51.3 6.1 57 226-282 633-692 (1025)
66 PF04719 TAFII28: hTAFII28-lik 80.5 2.6 5.7E-05 36.9 4.3 64 127-191 23-88 (90)
67 KOG3219|consensus 79.9 1.8 3.9E-05 42.8 3.4 66 125-191 110-176 (195)
68 smart00427 H2B Histone H2B. 78.0 3.3 7.2E-05 36.2 4.1 71 50-120 9-88 (89)
69 PTZ00463 histone H2B; Provisio 74.8 6 0.00013 36.2 5.1 61 131-191 32-92 (117)
70 PTZ00463 histone H2B; Provisio 70.1 6.1 0.00013 36.2 4.0 72 50-121 36-116 (117)
71 smart00576 BTP Bromodomain tra 68.4 10 0.00022 31.8 4.8 58 134-192 13-70 (77)
72 KOG2996|consensus 66.1 16 0.00035 41.8 7.0 103 232-368 204-307 (865)
73 PLN00158 histone H2B; Provisio 63.6 9.8 0.00021 34.9 4.0 71 50-120 35-114 (116)
74 PF15630 CENP-S: Kinetochore c 62.8 17 0.00037 30.9 5.0 68 125-196 6-76 (76)
75 KOG3522|consensus 61.2 21 0.00045 42.5 7.0 56 231-286 6-61 (925)
76 KOG3521|consensus 58.0 82 0.0018 36.9 10.7 135 223-404 175-311 (846)
77 KOG2070|consensus 56.6 24 0.00052 39.7 6.2 68 219-287 94-162 (661)
78 PF03847 TFIID_20kDa: Transcri 49.1 44 0.00095 27.8 5.2 62 131-192 3-64 (68)
79 PF02861 Clp_N: Clp amino term 46.5 11 0.00025 28.2 1.3 34 169-202 1-36 (53)
80 KOG0870|consensus 46.1 38 0.00082 33.0 5.0 67 124-191 7-76 (172)
81 cd07644 I-BAR_IMD_BAIAP2L2 Inv 45.5 1.2E+02 0.0027 30.6 8.6 67 306-372 21-106 (215)
82 PF09415 CENP-X: CENP-S associ 41.0 75 0.0016 26.7 5.5 59 129-188 1-63 (72)
83 PRK10797 glutamate and asparta 39.8 16 0.00034 37.9 1.6 34 13-46 237-271 (302)
84 PLN00160 histone H3; Provision 39.1 55 0.0012 29.2 4.6 74 116-190 11-89 (97)
85 cd07645 I-BAR_IMD_BAIAP2L1 Inv 38.8 1.7E+02 0.0037 29.9 8.5 67 306-372 21-106 (226)
86 PF02269 TFIID-18kDa: Transcri 36.7 25 0.00054 30.8 2.1 41 157-197 28-71 (93)
87 KOG0869|consensus 33.7 83 0.0018 30.5 5.1 64 127-191 32-97 (168)
88 KOG0689|consensus 33.6 21 0.00045 39.8 1.3 55 229-284 66-122 (448)
89 cd05133 RasGAP_IQGAP1 IQGAP1 i 32.9 3.4E+02 0.0073 29.6 10.3 34 339-372 110-144 (360)
90 PF02291 TFIID-31kDa: Transcri 31.7 41 0.00089 31.4 2.8 63 130-193 15-77 (129)
91 COG5398 Heme oxygenase [Inorga 30.9 1.3E+02 0.0029 30.6 6.3 61 295-369 148-208 (238)
92 cd07978 TAF13 The TATA Binding 29.2 92 0.002 27.3 4.4 30 165-195 40-69 (92)
93 PF06694 Plant_NMP1: Plant nuc 27.5 1.5E+02 0.0032 31.7 6.2 86 294-385 198-286 (325)
94 KOG1744|consensus 27.2 1.2E+02 0.0026 28.4 4.9 65 124-191 37-101 (127)
95 PTZ00018 histone H3; Provision 26.8 1.3E+02 0.0028 28.5 5.1 74 116-190 52-129 (136)
96 PLN00161 histone H3; Provision 25.6 2E+02 0.0043 27.3 6.1 75 115-190 44-123 (135)
97 KOG1954|consensus 25.5 1.9E+02 0.004 32.2 6.6 20 462-481 465-484 (532)
98 PLN00121 histone H3; Provision 24.8 1.3E+02 0.0028 28.5 4.8 74 116-190 52-129 (136)
99 PF08006 DUF1700: Protein of u 24.0 2.1E+02 0.0045 27.4 6.3 43 320-365 21-64 (181)
100 PF12096 DUF3572: Protein of u 23.8 58 0.0013 28.6 2.1 54 130-190 21-80 (88)
101 cd07646 I-BAR_IMD_IRSp53 Inver 23.0 4.5E+02 0.0097 27.1 8.5 66 306-372 23-108 (232)
102 KOG1142|consensus 22.9 1.1E+02 0.0024 31.8 4.3 68 126-193 153-220 (258)
103 PHA02961 hypothetical protein; 22.1 1.3E+02 0.0028 35.1 5.0 147 110-278 7-163 (658)
104 TIGR02995 ectoine_ehuB ectoine 21.5 48 0.001 33.4 1.4 30 15-44 230-259 (275)
No 1
>PTZ00252 histone H2A; Provisional
Probab=99.97 E-value=2.4e-32 Score=247.56 Aligned_cols=91 Identities=22% Similarity=0.414 Sum_probs=87.5
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHh--cCCcccccchhhhhhcCchHHHhhhc
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKN--IRHVEVAQQDIKVAMYADKVLMDMFY 201 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~--~k~~rItp~hi~~Ai~~D~eL~~Lf~ 201 (551)
|||+|||+||||+|++++|+.||+++||||||||||||++||||||||.|++ ++++||+|+||++||+||+||++||+
T Consensus 22 AGL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIrNDeEL~~Ll~ 101 (134)
T PTZ00252 22 AGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVRHDDDLGSLLK 101 (134)
T ss_pred cCccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhccChHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999976 78899999999999999999999999
Q ss_pred CCCccccCCcccccc
Q psy1414 202 QDEHTSDSGSIVHSV 216 (551)
Q Consensus 202 ~~~~ti~~ggv~~~~ 216 (551)
+ +||++|||+++-
T Consensus 102 ~--vTIa~GGVlP~i 114 (134)
T PTZ00252 102 N--VTLSRGGVMPSL 114 (134)
T ss_pred C--CccCCCccCCCc
Confidence 8 899999999643
No 2
>PLN00154 histone H2A; Provisional
Probab=99.97 E-value=2.6e-32 Score=248.10 Aligned_cols=90 Identities=28% Similarity=0.523 Sum_probs=86.3
Q ss_pred CcccccHhHHHHhhhcCc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcC
Q psy1414 124 SCLVLPVEKIHYLLSKDV-LQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQ 202 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~-~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~ 202 (551)
|+|+|||+||||+||+++ +.+||+++|||||||||||||+||||||||+|++++++||||+||++||+||+||++||+
T Consensus 35 AgL~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIrnDeEL~~Ll~- 113 (136)
T PLN00154 35 AGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK- 113 (136)
T ss_pred cCccCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhccCcHHHHHHhc-
Confidence 999999999999999998 468999999999999999999999999999999999999999999999999999999997
Q ss_pred CCccccCCcccccc
Q psy1414 203 DEHTSDSGSIVHSV 216 (551)
Q Consensus 203 ~~~ti~~ggv~~~~ 216 (551)
+||++|||++.-
T Consensus 114 --~TIa~GGVlP~i 125 (136)
T PLN00154 114 --GTIAGGGVIPHI 125 (136)
T ss_pred --CCccCCccCCCc
Confidence 599999999754
No 3
>PLN00153 histone H2A; Provisional
Probab=99.97 E-value=3.4e-32 Score=246.18 Aligned_cols=91 Identities=27% Similarity=0.496 Sum_probs=88.8
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcCC
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQD 203 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~~ 203 (551)
|||+|||+||||+|++++|+.||+++||||||||||||++||||||||.|++++++||||+||++||+||+||++||++
T Consensus 21 agL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~~- 99 (129)
T PLN00153 21 AGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGE- 99 (129)
T ss_pred cCcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhccCcHHHHHHHCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CccccCCcccccc
Q psy1414 204 EHTSDSGSIVHSV 216 (551)
Q Consensus 204 ~~ti~~ggv~~~~ 216 (551)
+||++|||+++-
T Consensus 100 -vTIa~GGV~P~i 111 (129)
T PLN00153 100 -VTIASGGVLPNI 111 (129)
T ss_pred -CccCCCccCCCc
Confidence 899999999754
No 4
>PLN00157 histone H2A; Provisional
Probab=99.97 E-value=3.7e-32 Score=246.81 Aligned_cols=91 Identities=26% Similarity=0.481 Sum_probs=88.6
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcCC
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQD 203 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~~ 203 (551)
|||+|||+||||+|++++|+.||+++||||||||||||++||||||||+|++++++||||+||++||+||+||++||++
T Consensus 23 agL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~~- 101 (132)
T PLN00157 23 AGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGG- 101 (132)
T ss_pred cCcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhcccCcHHHHHHHcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccCCcccccc
Q psy1414 204 EHTSDSGSIVHSV 216 (551)
Q Consensus 204 ~~ti~~ggv~~~~ 216 (551)
+||++|||+++-
T Consensus 102 -vtIa~GGV~P~i 113 (132)
T PLN00157 102 -VTIAAGGVLPNI 113 (132)
T ss_pred -ceecCCccCCCc
Confidence 899999999643
No 5
>smart00414 H2A Histone 2A.
Probab=99.97 E-value=5.2e-32 Score=239.29 Aligned_cols=94 Identities=28% Similarity=0.528 Sum_probs=90.2
Q ss_pred ccccCcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhh
Q psy1414 120 KKKISCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDM 199 (551)
Q Consensus 120 ~~k~a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~L 199 (551)
+.| +||+|||+||||+||+++|++||+++|+||||||||||++||||||||+|++++++||||+||++||+||+||++|
T Consensus 3 S~r-agL~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~nD~EL~~L 81 (106)
T smart00414 3 SAR-AGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELNKL 81 (106)
T ss_pred ccc-CCccCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccCCHHHHHH
Confidence 445 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccccCCcccccc
Q psy1414 200 FYQDEHTSDSGSIVHSV 216 (551)
Q Consensus 200 f~~~~~ti~~ggv~~~~ 216 (551)
|++ +||++|||++..
T Consensus 82 ~~~--vti~~ggv~p~i 96 (106)
T smart00414 82 LKG--VTIAQGGVLPNI 96 (106)
T ss_pred HcC--cccCCCccCCCc
Confidence 998 899999999743
No 6
>PTZ00017 histone H2A; Provisional
Probab=99.97 E-value=4.1e-32 Score=247.30 Aligned_cols=91 Identities=30% Similarity=0.527 Sum_probs=88.7
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcCC
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQD 203 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~~ 203 (551)
+||+|||+||||+|++++|+.||+++||||||||||||++||||||||+|++++++||||+||++||+||+||++||+.
T Consensus 24 agL~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~~- 102 (134)
T PTZ00017 24 AGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRNDEELNKLLAG- 102 (134)
T ss_pred CCcccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhccCcHHHHHHHcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CccccCCcccccc
Q psy1414 204 EHTSDSGSIVHSV 216 (551)
Q Consensus 204 ~~ti~~ggv~~~~ 216 (551)
+||++|||+++.
T Consensus 103 -vtIa~GGV~P~i 114 (134)
T PTZ00017 103 -VTIASGGVLPNI 114 (134)
T ss_pred -CcccCCccCCCc
Confidence 899999999754
No 7
>PLN00156 histone H2AX; Provisional
Probab=99.97 E-value=8.2e-32 Score=245.97 Aligned_cols=91 Identities=26% Similarity=0.488 Sum_probs=88.7
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcCC
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQD 203 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~~ 203 (551)
|+|+|||+||||+|++++|+.||+++||||||||||||++||||||||.|++++++||+|+||++||+||+||++||++
T Consensus 26 AgL~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIrnDeEL~~Ll~~- 104 (139)
T PLN00156 26 AGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGS- 104 (139)
T ss_pred cCcccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhccCcHHHHHHHCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccCCcccccc
Q psy1414 204 EHTSDSGSIVHSV 216 (551)
Q Consensus 204 ~~ti~~ggv~~~~ 216 (551)
+||++|||+++.
T Consensus 105 -vTIa~GGV~P~i 116 (139)
T PLN00156 105 -VTIAAGGVLPNI 116 (139)
T ss_pred -CccCCCccCCCc
Confidence 899999999644
No 8
>KOG1756|consensus
Probab=99.97 E-value=4.7e-31 Score=235.72 Aligned_cols=96 Identities=28% Similarity=0.525 Sum_probs=91.2
Q ss_pred hcccccCcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHH
Q psy1414 118 KSKKKISCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLM 197 (551)
Q Consensus 118 k~~~k~a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~ 197 (551)
+++.+ ++++||||||||+||+++|.+||+++||||++||||||+|||||+|||+|++++++||||+||++||+||+||+
T Consensus 19 srs~~-agl~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~NDeEL~ 97 (131)
T KOG1756|consen 19 SRSSR-AGLQFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIRNDEELN 97 (131)
T ss_pred chhhh-cccccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHhCcHHHH
Confidence 34445 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccccCCcccccc
Q psy1414 198 DMFYQDEHTSDSGSIVHSV 216 (551)
Q Consensus 198 ~Lf~~~~~ti~~ggv~~~~ 216 (551)
.|++. +||++|||+++-
T Consensus 98 ~lL~~--vtIa~GGvlPnI 114 (131)
T KOG1756|consen 98 KLLGK--VTIAQGGVLPNI 114 (131)
T ss_pred HHhcc--ceeccCCccccc
Confidence 99998 899999999754
No 9
>KOG3518|consensus
Probab=99.97 E-value=3.2e-30 Score=262.16 Aligned_cols=180 Identities=20% Similarity=0.331 Sum_probs=155.8
Q ss_pred ccccHHH-HHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cCC-CCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCC
Q psy1414 299 SELTYEE-IVHDLVTDEKQHLRDLHMINKVFLEEIVK-LIP-PGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEA 375 (551)
Q Consensus 299 ~~~~y~e-vv~eli~tEr~YirdL~~Ii~~f~~~~~~-~~~-~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~ 375 (551)
+++.|.| ++.|++.|||.|++||+.||++|.+++.. +.. .++-+.+..+||||+|||.|+.+++.+|+.+ +.
T Consensus 117 gsl~~ldriaieildtertyvedl~aiie~yld~i~edqeklkl~ldaisalfg~ie~ifafnkel~n~ldaa----dl- 191 (521)
T KOG3518|consen 117 GSLLHLDRIAIEILDTERTYVEDLKAIIEDYLDCIREDQEKLKLGLDAISALFGCIEDIFAFNKELLNDLDAA----DL- 191 (521)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhccCcHHHHHHHhhhHHHHHHHHHHHHHHHhhc----cc-
Confidence 5578887 78999999999999999999999999984 333 3778999999999999999999999999986 32
Q ss_pred CcccchhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccc
Q psy1414 376 SNVVIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIP 455 (551)
Q Consensus 376 ~~~~IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~ 455 (551)
+.+.|+.||++ .+++|.+|++||+|+++ .+.. |..+|++|-++.+
T Consensus 192 d~v~ia~cfve--~s~efe~yieyctny~r--mmat-------------------------------l~~~~q~~ilaka 236 (521)
T KOG3518|consen 192 DCVAIAECFVE--KSEEFEDYIEYCTNYHR--MMAT-------------------------------LTECMQNKILAKA 236 (521)
T ss_pred chHHHHHHHHh--cchhHHHHHHHHhhhHH--HHHH-------------------------------HHHHHHhHHHHHH
Confidence 56889999988 67999999999999875 3443 5666899999999
Q ss_pred cccccchhhhhHHhccc--ccchhhHHHHHhhHHHHHHHhcCCC---CCchhHHHHHHHHHHHHHHHHHHHH
Q psy1414 456 LQSGGQGFKEAVKYYLP--KLFLHPLWHCFLYFDYIRILRGLSP---DKEDRESLIQVEGLLKALQVDLSDS 522 (551)
Q Consensus 456 ~~~~~~~f~~av~y~Lp--~lLL~PV~hi~kY~~~l~~L~k~s~---~~~D~~~l~~a~~~l~~v~~~i~~~ 522 (551)
||+ .++|++++|| .|||+|||+|+|||++|.++.++-+ ..+++..+++|..+|..+|..|.+.
T Consensus 237 ~qe----rq~al~hsl~l~ayllkpvqrilkyhlfle~i~k~l~~~thpeel~qvk~ahd~m~~qa~~inde 304 (521)
T KOG3518|consen 237 FQE----RQEALKHSLPLGAYLLKPVQRILKYHLFLEEIEKHLDKDTHPEELDQVKDAHDTMQRQAAHINDE 304 (521)
T ss_pred HHH----HHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHhcch
Confidence 997 6899999999 9999999999999999999988643 2468999999999999999877543
No 10
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=99.96 E-value=2.8e-30 Score=231.29 Aligned_cols=91 Identities=29% Similarity=0.519 Sum_probs=88.7
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcCC
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQD 203 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~~ 203 (551)
+||+|||+||||+|+++.+++||+++|+||||||||||++||||+|||+|++.++++|||+||++||+||+||++||++
T Consensus 17 agL~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~nD~EL~~L~~~- 95 (115)
T cd00074 17 AGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRNDEELNKLLKG- 95 (115)
T ss_pred cCccCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhccHHHHHHHcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccCCcccccc
Q psy1414 204 EHTSDSGSIVHSV 216 (551)
Q Consensus 204 ~~ti~~ggv~~~~ 216 (551)
+||++|||+++.
T Consensus 96 -vtI~~ggv~p~i 107 (115)
T cd00074 96 -VTIASGGVLPNI 107 (115)
T ss_pred -CcccCCccCCCc
Confidence 799999999754
No 11
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=99.96 E-value=2.2e-30 Score=227.88 Aligned_cols=96 Identities=26% Similarity=0.502 Sum_probs=91.3
Q ss_pred HHhcccccCcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchH
Q psy1414 116 IEKSKKKISCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKV 195 (551)
Q Consensus 116 l~k~~~k~a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~e 195 (551)
.++++.+ ++++|||+||+|+|+++++..||++.++||++||||||++||||+|||+|++++++||+|+||++|||||+|
T Consensus 16 ~~s~sa~-agl~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIrnD~E 94 (132)
T COG5262 16 SQSRSAK-AGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIRNDEE 94 (132)
T ss_pred ccchhhh-cCccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhcCcHH
Confidence 3455556 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccccCCcccc
Q psy1414 196 LMDMFYQDEHTSDSGSIVH 214 (551)
Q Consensus 196 L~~Lf~~~~~ti~~ggv~~ 214 (551)
|+.|+++ .||++|||++
T Consensus 95 L~~l~~~--~tIa~GGvlp 111 (132)
T COG5262 95 LNKLLGD--VTIAQGGVLP 111 (132)
T ss_pred HHHHhhh--heeecCCccc
Confidence 9999998 7999999995
No 12
>KOG1757|consensus
Probab=99.95 E-value=2.2e-29 Score=219.97 Aligned_cols=92 Identities=26% Similarity=0.491 Sum_probs=87.1
Q ss_pred cccccCcccccHhHHHHhhhcCcccc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHH
Q psy1414 119 SKKKISCLVLPVEKIHYLLSKDVLQY-KVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLM 197 (551)
Q Consensus 119 ~~~k~a~L~FPV~ri~r~Lk~~~~~~-Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~ 197 (551)
++.+ +|+||||+||||+|+.+..++ ||+++++||.+|||||||+||||||||++++.|.+||||+|+|+||++|+||+
T Consensus 23 ~s~r-aGlqFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLAiRGDeELD 101 (131)
T KOG1757|consen 23 RSAR-AGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD 101 (131)
T ss_pred HHHh-cccccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeeeccchhheeeecCcHHHH
Confidence 3445 899999999999999988875 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccccCCcccc
Q psy1414 198 DMFYQDEHTSDSGSIVH 214 (551)
Q Consensus 198 ~Lf~~~~~ti~~ggv~~ 214 (551)
.|++ .||++|||++
T Consensus 102 tLIk---~TiagGgViP 115 (131)
T KOG1757|consen 102 TLIK---ATIAGGGVIP 115 (131)
T ss_pred HHHH---HhhccCcccc
Confidence 9999 5999999995
No 13
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.91 E-value=2.1e-24 Score=202.51 Aligned_cols=177 Identities=28% Similarity=0.418 Sum_probs=145.5
Q ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccchhhHH
Q psy1414 306 IVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVIGSCLE 385 (551)
Q Consensus 306 vv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~IG~CF~ 385 (551)
++.|++.||+.|+++|+.+++.|..++.+..+.+++.+++.||+||++|++++..||.+|++..+..++ ..+.||.||.
T Consensus 1 ii~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~-~~~~i~~~f~ 79 (180)
T smart00325 1 VLKELLQTERNYVRDLKLLVEVFLKPLKKELKLLSPNELETLFGNIEEIYEFHRDFLDELEERIEEWDD-SPERIGDVFL 79 (180)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcccc-cccHHHHHHH
Confidence 478999999999999999999999999996546889999999999999999999999999999865431 4688999999
Q ss_pred hhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccccccccchhhh
Q psy1414 386 ELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQGFKE 465 (551)
Q Consensus 386 e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~ 465 (551)
++ ...|++|..||.|++ .+.+. +.++..+|.+..|++.....- .
T Consensus 80 ~~--~~~~~~Y~~Y~~~~~--~~~~~-------------------------------l~~~~~~~~f~~~~~~~~~~~-~ 123 (180)
T smart00325 80 KL--EEFFKIYSEYCSNHP--DALEL-------------------------------LKKLKKNPRFQKFLKEIESSP-Q 123 (180)
T ss_pred Hh--hHHHHHHHHHHHhHH--HHHHH-------------------------------HHHhhcChhHHHHHHHHhCCh-h
Confidence 87 578999999999974 34443 222344555555555421111 1
Q ss_pred hHHhcccccchhhHHHHHhhHHHHHHHhcCCC-CCchhHHHHHHHHHHHHHHHHH
Q psy1414 466 AVKYYLPKLFLHPLWHCFLYFDYIRILRGLSP-DKEDRESLIQVEGLLKALQVDL 519 (551)
Q Consensus 466 av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~-~~~D~~~l~~a~~~l~~v~~~i 519 (551)
.-...|++||..||||+.+|+++|++|.|+|+ .++|+..+++|+..++.+...|
T Consensus 124 ~~~~~l~~~L~~PvqRl~rY~lll~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~i 178 (180)
T smart00325 124 CRRLTLESLLLKPVQRLTKYPLLLKELLKHTPEDHEDREDLKKALKAIKELANQV 178 (180)
T ss_pred hccCCHHHHHhHHHHHhccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 12378999999999999999999999999998 4899999999999999998765
No 14
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.91 E-value=6e-24 Score=199.60 Aligned_cols=175 Identities=28% Similarity=0.400 Sum_probs=142.6
Q ss_pred HHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccchhhH
Q psy1414 305 EIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVIGSCL 384 (551)
Q Consensus 305 evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~IG~CF 384 (551)
+++.|++.||+.|+++|+.+++.|.+++.+....++++++..||+||++|++++..||.+|++..+..+. ..+.||.||
T Consensus 3 ~vi~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~-~~~~i~~~f 81 (181)
T cd00160 3 EVIKELLQTERNYVRDLKLLVEVFLKPLDKELLPLSPEEVELLFGNIEEIYEFHRIFLKSLEERVEEWDK-SGPRIGDVF 81 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHH
Confidence 6899999999999999999999999999886433789999999999999999999999999998865431 357899999
Q ss_pred HhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhh-cCCccccccccccchh
Q psy1414 385 EELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEEL-KNPEVSIPLQSGGQGF 463 (551)
Q Consensus 385 ~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~f 463 (551)
.++.. .|++|..||.|++. +.+.+ .+++ .+|.+..+.+. +
T Consensus 82 ~~~~~--~~~~Y~~Y~~~~~~--~~~~l-------------------------------~~~~~~~~~f~~~~~~----~ 122 (181)
T cd00160 82 LKLAP--FFKIYSEYCSNHPD--ALELL-------------------------------KKLKKFNKFFQEFLEK----A 122 (181)
T ss_pred HHhhh--HHHHHHHHHhChHH--HHHHH-------------------------------HHHHHccHHHHHHHHH----H
Confidence 99874 99999999999753 44432 2222 12222222221 1
Q ss_pred h-hhHHhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHH
Q psy1414 464 K-EAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLKALQVDL 519 (551)
Q Consensus 464 ~-~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~~v~~~i 519 (551)
+ ..-...|++||.+||||+.+|+++|++|+|+|++ ++|+..|++|+..++.+...|
T Consensus 123 ~~~~~~~~l~~~L~~PvQRl~rY~lLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~i 180 (181)
T cd00160 123 ESECGRLKLESLLLKPVQRLTKYPLLLKELLKHTPDGHEDREDLKKALEAIKEVASQV 180 (181)
T ss_pred HHhcccCCHHHHhhhhHHHhchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 1 2455889999999999999999999999999986 899999999999999988765
No 15
>KOG3519|consensus
Probab=99.86 E-value=4.1e-22 Score=227.48 Aligned_cols=182 Identities=21% Similarity=0.271 Sum_probs=159.5
Q ss_pred HHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccc--cCCCcccchh
Q psy1414 305 EIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMC--NEASNVVIGS 382 (551)
Q Consensus 305 evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~--~~~~~~~IG~ 382 (551)
.+++|++.+|++|++||+.|.+.|..++.+....+++++++.+||||+||++|+.+||+.||+++++. ++ +...||.
T Consensus 339 ~vi~E~l~tE~~Yv~~L~~~~~~yl~~~~k~~~~~~~~~~~~~f~ni~~i~~f~~~fl~~L~~~~~~~~~~~-~~~~ig~ 417 (756)
T KOG3519|consen 339 KVIKELLDTEKNYVKDLNALCEGYLPPQNKRARGLSVNQLDLLFGNIEDILRFQKEFLKTLEQQINPELIPP-SLSEIGP 417 (756)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhccccHHHHHHHccCHHHHHHHHHHHHHHHHHhcchhhcch-hHhHHHH
Confidence 48899999999999999999999999998888889999999999999999999999999999999876 43 7799999
Q ss_pred hHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccccccccch
Q psy1414 383 CLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQG 462 (551)
Q Consensus 383 CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 462 (551)
||++.. +.|-+|.+||++++ +.++. |...++++++. .++.+|...+.+.+
T Consensus 418 ~fL~~~--~~f~~ys~yc~~h~-~~~~~-l~~~~~~~~~~-------------~~l~~~~~~~~~~~------------- 467 (756)
T KOG3519|consen 418 VFLEQL--DVFKIYSEYCNNHP-KAQKK-LSKLKKKKKVK-------------EFLEACNLLQQHSN------------- 467 (756)
T ss_pred HHHHhc--ccceeechhhhccc-hHHHH-HHHHhhhhhhh-------------hhhhhhhhhhcccc-------------
Confidence 998865 89999999999986 46666 67777777773 45566666555543
Q ss_pred hhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHHHh
Q psy1414 463 FKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLKALQVDLSDSL 523 (551)
Q Consensus 463 f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~~v~~~i~~~~ 523 (551)
+.|.++|++|||+|+||+++++++++.++. +.|+..+..|.-+|+.++..|...-
T Consensus 468 ------~~L~s~l~~pvqri~kYPLll~elld~t~~~~~~~~~l~~a~~~m~~~~~~INe~~ 523 (756)
T KOG3519|consen 468 ------SSLSSFLLKPVQRICKYPLLLNELLDSTPLESSDYVPLSAALPAMKTVASLINEMK 523 (756)
T ss_pred ------CCchhhhccHHHHhccCchhhhhhhhhccCCcchhhhhhhhhhhhhhHHHHHhhhh
Confidence 788999999999999999999999999874 7899999999999999999997654
No 16
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.85 E-value=5.8e-21 Score=177.34 Aligned_cols=178 Identities=21% Similarity=0.289 Sum_probs=139.0
Q ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccchhhHH
Q psy1414 306 IVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVIGSCLE 385 (551)
Q Consensus 306 vv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~IG~CF~ 385 (551)
|+.|++.+|+.|+++|+.+++.|...+.+..+.+++.++..+|+||++|++++..|+..|+..++.. ...+.||.||.
T Consensus 1 vi~ELi~tE~~y~~~L~~l~~~~~~~l~~~~~~l~~~~~~~lf~~i~~l~~~h~~ll~~L~~~~~~~--~~~~~i~~if~ 78 (180)
T PF00621_consen 1 VINELIETERSYVEDLEILVEVFLKPLRKRSPLLSEDEIKSLFGNIEELIEIHQQLLESLEERMKEW--SNIQSIGDIFL 78 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT--SSGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHhcchhhhhhHHHHHHHHHHHHHHhh--hccchhhhhhh
Confidence 6899999999999999999999999998865567899999999999999999999999999976322 36789999998
Q ss_pred hhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCc-cccccccccchhh
Q psy1414 386 ELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPE-VSIPLQSGGQGFK 464 (551)
Q Consensus 386 e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~f~ 464 (551)
. + ..-+++|..||++++. +...+. ++.+++. +..|++.... ..
T Consensus 79 ~-~-~~~~~~Y~~Y~~~~~~--~~~~~~-------------------------------~~~~~~~~~~~~l~~~~~-~~ 122 (180)
T PF00621_consen 79 K-F-EPFLKVYISYCSNYPD--ALSLLE-------------------------------ELRKKNSEFKKFLEEIEN-SP 122 (180)
T ss_dssp H-H-TTGGHHHHHHHHHHHH--HHHHHH-------------------------------HHHHHHHHHHHHHHHHHT-SH
T ss_pred h-c-cccccceeccchheec--hhhhhh-------------------------------HHHhhccccccccccccc-cc
Confidence 8 3 3578899999999742 333322 2222211 2222221000 01
Q ss_pred hhHHhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHH
Q psy1414 465 EAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLKALQVDLSD 521 (551)
Q Consensus 465 ~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~~v~~~i~~ 521 (551)
..-...++.+|+.|+||+.+|+++|++|++++++ ++|+..|++|+..++.+...|.+
T Consensus 123 ~~~~~~l~~~l~~Piqrl~rY~lll~~llk~t~~~~~d~~~L~~a~~~i~~l~~~in~ 180 (180)
T PF00621_consen 123 ESKRLSLSSLLIKPIQRLPRYPLLLKRLLKNTPPDHPDYKSLQKALDQIKELIQHINE 180 (180)
T ss_dssp HCTTSTHHHHTTHHHHHHHHHHHHHHHHHHTSSTTSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHhhhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhCc
Confidence 1123678899999999999999999999999875 77999999999999999988753
No 17
>KOG4240|consensus
Probab=99.77 E-value=1.4e-18 Score=198.41 Aligned_cols=208 Identities=17% Similarity=0.233 Sum_probs=149.4
Q ss_pred HhhhHHHHHHhhh------ccCCCCCCcccccCCC-cccc---------HHHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Q psy1414 270 MFANLMDIYEFSL------NFKTPPDPLFIHETTS-SELT---------YEEIVHDLVTDEKQHLRDLHMINKVFLEEIV 333 (551)
Q Consensus 270 ~f~ni~~i~~~~~------~~~~~~d~~e~~p~~~-~~~~---------y~evv~eli~tEr~YirdL~~Ii~~f~~~~~ 333 (551)
=|+.-++.+..++ .-++.+|-..|-+..+ .++. +..+++|++.+||.|+|||...+.+|+.+|.
T Consensus 584 ~~~~~~~~~~~sk~~~~~~~~~s~~~q~~l~ra~~~~~l~~e~~~~arl~~~~m~ellqterayv~~L~~~l~~y~~e~d 663 (1025)
T KOG4240|consen 584 SFSRRMGKRCGSKEKALGGSALSSKDQLKLQRASGNESLNEEKRSLARLKRHVMRELLQTERAYVRDLEECLEGYLAEMD 663 (1025)
T ss_pred CCCcccchhhhhHHHHhccccccChhhhhhccccchhhhhhhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555666555543 3455566666644432 2222 2347899999999999999999999999999
Q ss_pred hcCCC---CChhHHHHhhhcHHHHHHHH-HHHHHHHHHhhccccCCCcccchhhHHhhhhhccchhHHHHhhccCCCCch
Q psy1414 334 KLIPP---GKCKELDQMFANLMDIYEFS-CNLVGILEDNLEMCNEASNVVIGSCLEELAEAAEFDVYSRYAKDITYYKCP 409 (551)
Q Consensus 334 ~~~~~---~~~~~v~~iFgNI~dIyef~-~~~L~~LEd~~e~~~~~~~~~IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~ 409 (551)
+.... ..-+..+.|||||+|||+|+ ..||..||++-. .+-.||.||++.+ ..|.+|.+||+|-|.+
T Consensus 664 ~~~~~i~~~~Lnk~~~ifgnmeeiy~fhn~~~L~eLe~y~~-----~pE~Vg~~fle~~--d~fqly~~Yc~nke~S--- 733 (1025)
T KOG4240|consen 664 SPMKEILPPLLNKKEIIFGNMEEIYEFHNDIFLSELEKYEQ-----LPEDVGHCFLERA--DDFQLYAKYCQNKELS--- 733 (1025)
T ss_pred chhhhccccccchHHHHHhhHHHHHHHHhhHHHHHhhhhcc-----CHHHHHHHHHHHH--HHHHHHHHHHhCCcch---
Confidence 96221 22338889999999999999 679999998633 4456999999965 8999999999996532
Q ss_pred hHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccccccccchhhhhHHhcccccchhhHHHHHhhHHHH
Q psy1414 410 EKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYI 489 (551)
Q Consensus 410 ~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l 489 (551)
+.++++-+. +.||++.. -++..+..+.+||++|||+|.||+++|
T Consensus 734 -------------------------------~ql~~~~a~---~~ff~e~q--r~~~l~l~~~S~l~kpvqritkYqlll 777 (1025)
T KOG4240|consen 734 -------------------------------NQLIRLHAG---CSFFQEIQ--RRHGLELSISSYLIKPVQRITKYQLLL 777 (1025)
T ss_pred -------------------------------HHHHHhccc---ccccHHHH--HHhhhhhhhHHHHhHHHHHHHHHHHHH
Confidence 123433332 33444322 244555699999999999999999999
Q ss_pred HHHhcCCCCCchhHHHHHHHHHH----HHHHHHHHHHhcc
Q psy1414 490 RILRGLSPDKEDRESLIQVEGLL----KALQVDLSDSLQN 525 (551)
Q Consensus 490 ~~L~k~s~~~~D~~~l~~a~~~l----~~v~~~i~~~~~~ 525 (551)
++|+++ ..++..++++|++.| +.+...|+-++-+
T Consensus 778 kell~~--c~e~~~~lkd~l~~ml~v~k~~nd~mh~~~~~ 815 (1025)
T KOG4240|consen 778 KELLKC--CCEGTGDLKDALEVMLSVPKKVNDSMHLIALE 815 (1025)
T ss_pred HHHHHh--hhhchHHHHHHHHHHHhhhhhcccccCHHHHh
Confidence 999994 445677777777765 5556667766643
No 18
>KOG2996|consensus
Probab=99.66 E-value=4.3e-16 Score=167.92 Aligned_cols=173 Identities=16% Similarity=0.309 Sum_probs=138.7
Q ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccchhhHH
Q psy1414 306 IVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVIGSCLE 385 (551)
Q Consensus 306 vv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~IG~CF~ 385 (551)
-++|+-.||..|.+-|-+|.+-|.+++...++ +.+.+.+|+||+||-+++..||++||..+-... .+.+|.-|.
T Consensus 201 ClrEi~~TE~kY~~tL~sI~k~f~~PLk~~l~---~ad~~ivFiNieel~klHt~ll~ei~~sv~v~~---~qtl~qVFi 274 (865)
T KOG2996|consen 201 CLREIQQTEEKYTQTLESIEKTFMEPLKRFLP---PADYNIVFINIEELNKLHTALLAEIEYSVKVAG---GQTLYQVFI 274 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---hhhhheeEecHHHHHHHHHHHHHHhHHHhhCCC---cccHHHHHH
Confidence 46899999999999999999999999877555 999999999999999999999999999885443 377999999
Q ss_pred hhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccccccccchhhh
Q psy1414 386 ELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQGFKE 465 (551)
Q Consensus 386 e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~ 465 (551)
.+- +.|-||-+||.|+++ .+..|.++++..+-+.-+..+| ... + .
T Consensus 275 kyk--er~liYG~YCS~~e~--a~k~ln~llktrEdv~~kleEc-----------------t~r----------~----n 319 (865)
T KOG2996|consen 275 KYK--ERLLIYGKYCSNVES--ARKLLNELLKTREDVSRKLEEC-----------------TAR----------A----N 319 (865)
T ss_pred HHH--HHHhhhhhhhccchH--HHHHHHHHHHHhHHHHHHHHHH-----------------Hhh----------h----c
Confidence 985 799999999999854 4555555555444433233333 111 1 1
Q ss_pred hHHhcccccchhhHHHHHhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Q psy1414 466 AVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDL 519 (551)
Q Consensus 466 av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~~~D~~~l~~a~~~l~~v~~~i 519 (551)
--|+-|-.||.+|.||++|||++|++|.|+|......++|+.|+++|+-|+.-|
T Consensus 320 ngkF~l~DLL~VPmQRvlKYhLLLkEL~kht~~a~ek~~LkeAleaM~Dla~yi 373 (865)
T KOG2996|consen 320 NGKFTLRDLLVVPMQRVLKYHLLLKELVKHTDEASEKRNLKEALEAMEDLAQYI 373 (865)
T ss_pred CCceeeceeeeeeHHHHHHHHHHHHHHHHhcccCChhhhHHHHHHHHHHHHHHH
Confidence 124567789999999999999999999999987666669999999999888654
No 19
>KOG0689|consensus
Probab=99.47 E-value=3e-14 Score=153.29 Aligned_cols=173 Identities=16% Similarity=0.234 Sum_probs=132.1
Q ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCC-CCChhHHHHhhhcHHHHHHHHHH-HHHHHHHhhccccCCCcccchhh
Q psy1414 306 IVHDLVTDEKQHLRDLHMINKVFLEEIVKLIP-PGKCKELDQMFANLMDIYEFSCN-LVGILEDNLEMCNEASNVVIGSC 383 (551)
Q Consensus 306 vv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~-~~~~~~v~~iFgNI~dIyef~~~-~L~~LEd~~e~~~~~~~~~IG~C 383 (551)
+.+|++.||+.|++||..++++|.+.+..... ..-.++-+.|||||.+||+|+.. ||.++|++.. ++...|.-
T Consensus 66 v~~e~iaTE~~yv~~l~~~~~~y~~~~~~~~lp~~lrg~~~iifgni~~i~~~h~~~fl~e~e~~~r-----~~~~~~~~ 140 (448)
T KOG0689|consen 66 VLDELIATEVDYVKDLKSVVENYIELLDAEDLPEDLRGKDKIIFGNIKEIYEFHKKEFLPELERCER-----DPLELGQA 140 (448)
T ss_pred HHHHHHHHHHhhhhccccccccccccccccCCChhccCCceeeechHHHHHHhhcccCcchHHHhhh-----CHHHHHHH
Confidence 78999999999999999999999999888522 23344567899999999999966 6999999854 35679999
Q ss_pred HHhhhhhccch-hHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccccccccch
Q psy1414 384 LEELAEAAEFD-VYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQG 462 (551)
Q Consensus 384 F~e~ae~~eFd-iY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 462 (551)
|+++.+ +|. .|.+||+|.|+.+..-. +| ..-.||+. ..
T Consensus 141 f~kh~~--k~~~~y~~y~q~kp~s~~~~~--------~~-----------------------------~~~~~f~~--~~ 179 (448)
T KOG0689|consen 141 FAKHER--KNSVLYVTYCQNKPKSDYLLA--------EY-----------------------------DNEAFFQE--YQ 179 (448)
T ss_pred HHHHHH--HhhhhhhhhhcCCCCCcccce--------ec-----------------------------ccchhhHH--Hh
Confidence 998875 555 99999999876421110 00 00111111 01
Q ss_pred hhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHHHhc
Q psy1414 463 FKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLKALQVDLSDSLQ 524 (551)
Q Consensus 463 f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~~v~~~i~~~~~ 524 (551)
-++..+..|-+||++|||++.||+++|+.+.+.++. ..|...|.+|.+.|+.+-...+.+.+
T Consensus 180 ~~~~~~l~l~~~l~kPiQR~~kYqlLL~~~~k~~~~~~~d~~~l~~a~e~m~~~~~~~~d~~~ 242 (448)
T KOG0689|consen 180 TQLGHKLDLSSYLIKPVQRIMKYQLLLQDFLKFCEKAGDDTDALCKAEEVMRFVLKRCNDMMQ 242 (448)
T ss_pred hhcccccccchhhhhhhHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhHhhhc
Confidence 133445677799999999999999999999998764 67899999999999998887776663
No 20
>PLN00155 histone H2A; Provisional
Probab=99.46 E-value=2.3e-14 Score=113.15 Aligned_cols=38 Identities=32% Similarity=0.564 Sum_probs=37.5
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHH
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYI 161 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYL 161 (551)
|+|+|||+||||+|++++|+.||+++||||||||||||
T Consensus 21 AgL~FPVgri~r~Lr~g~~a~Rvga~apVYlAAVLEYL 58 (58)
T PLN00155 21 AGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58 (58)
T ss_pred cccccchHHHHHHHhcCChhhcccCCcHHHHHHHHHhC
Confidence 99999999999999999999999999999999999996
No 21
>KOG4424|consensus
Probab=99.44 E-value=7.7e-13 Score=143.64 Aligned_cols=169 Identities=17% Similarity=0.272 Sum_probs=129.3
Q ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHH-HHHHHhhccccCCCcccchhhH
Q psy1414 306 IVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLV-GILEDNLEMCNEASNVVIGSCL 384 (551)
Q Consensus 306 vv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L-~~LEd~~e~~~~~~~~~IG~CF 384 (551)
.++|++.||++|+.-|+.+-.+|..++.... .++++.+..|||||.-||.|+.+|| -.|+..+ ||.-|
T Consensus 70 iaqEll~tE~~Yv~~L~lLd~~F~~~L~~~~-~~~~~~v~~lf~nIssi~~fh~qfllp~l~~r~----------Iadv~ 138 (623)
T KOG4424|consen 70 IAQELLDTERTYVKRLHLLDQVFCRRLLEEA-SIPADVITGLFGNISSIHNFHGQFLLPELEKRI----------IADVF 138 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH----------HHHHH
Confidence 7999999999999999999999999988766 5889999999999999999996655 4444321 99999
Q ss_pred HhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcC-Cccccccccccchh
Q psy1414 385 EELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKN-PEVSIPLQSGGQGF 463 (551)
Q Consensus 385 ~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~f 463 (551)
-.+| --|.+|+.|++|+.+ .++. |..++++ |.+...+... +.
T Consensus 139 qKlA--PFLKmYseY~knydr--A~~L-------------------------------~~~lt~rsp~F~~vl~~I-ek- 181 (623)
T KOG4424|consen 139 QKLA--PFLKMYSEYAKNYDR--ALKL-------------------------------FQTLTSRSPQFRKVVEEI-EK- 181 (623)
T ss_pred HHhh--hHHHHHHHHHhcchh--HHHH-------------------------------HHHHHhhChHHHHHHHHH-hh-
Confidence 9987 889999999999864 4443 3344443 3333333221 11
Q ss_pred hhhH-HhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHHH
Q psy1414 464 KEAV-KYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLKALQVDLSDS 522 (551)
Q Consensus 464 ~~av-~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~~v~~~i~~~ 522 (551)
+++| ...|..+|+.|||||-.|-++|++.+++.|. ..|+.+++.|++.+...|.-+...
T Consensus 182 ~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~~lp~~d~D~~d~~ksLe~I~~aA~HsNaa 242 (623)
T KOG4424|consen 182 QPECGGLKLQHHMIEPVQRVPRYELLLQDYLLYLPPDDPDYKDLKKSLELISTAASHSNAA 242 (623)
T ss_pred chhcCCccchhheechhhhhhHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 1222 2578899999999999999999998877665 559999999998777776655433
No 22
>KOG2070|consensus
Probab=99.40 E-value=4.5e-12 Score=135.30 Aligned_cols=178 Identities=17% Similarity=0.286 Sum_probs=140.5
Q ss_pred cccHHHH-HHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcc
Q psy1414 300 ELTYEEI-VHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNV 378 (551)
Q Consensus 300 ~~~y~ev-v~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~ 378 (551)
...|.+| .+.++.+|+.|++.|...+.-|++++-. ...++..+...+.||.++||.|++.++..||.|-..++ ...
T Consensus 98 ~~~Yr~vVLk~~lesEkey~~eLq~lL~t~L~Plq~-s~iLs~~ey~~LmgNfeeI~t~~qdL~~qlEec~~~~~--~q~ 174 (661)
T KOG2070|consen 98 NKSYRNVVLKNILESEKEYSKELQTLLSTYLRPLQT-SEILSSAEYSYLMGNFEEICTFQQDLVQQLEECTKLPE--AQQ 174 (661)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccchHHHHHHhcchHHhHhHHHHHHHHHHHhhcCch--hhh
Confidence 4589995 5999999999999999999999999865 33478999999999999999999999999999865444 467
Q ss_pred cchhhHHhhhhhccc-hhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccccc
Q psy1414 379 VIGSCLEELAEAAEF-DVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQ 457 (551)
Q Consensus 379 ~IG~CF~e~ae~~eF-diY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 457 (551)
-||-||+..|= +| .+|-.||.|||+ .++.| .+| ++.|-+.|.+.+++.
T Consensus 175 RVGg~fln~ap--~mkt~~~aYcanHP~--AV~VL---------------------~k~---~dELek~me~Qgass--- 223 (661)
T KOG2070|consen 175 RVGGCFLNLAP--QMKTLYLAYCANHPS--AVNVL---------------------TKH---SDELEKFMETQGASS--- 223 (661)
T ss_pred hhhhHHHhhhH--HHHHHHHHHHhcCch--hhhHH---------------------HHh---HHHHHHHHHhcCCCC---
Confidence 89999998873 33 689999999864 34432 123 444555566544431
Q ss_pred cccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCC-CCchhHHHHHHHHHHHHHHHHH
Q psy1414 458 SGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSP-DKEDRESLIQVEGLLKALQVDL 519 (551)
Q Consensus 458 ~~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~-~~~D~~~l~~a~~~l~~v~~~i 519 (551)
.|. .+|--=|-+|.-|.=||.-+|++|..+-+ .|.|+.|+..+..+++++..+-
T Consensus 224 ---pg~-----lvLttgLSkPfrrldkY~~lLQELERhme~~HpDrgD~qrs~avfk~~~~~C 278 (661)
T KOG2070|consen 224 ---PGI-----LVLTTGLSKPFRRLDKYPTLLQELERHMEDYHPDRGDIQRSMAVFKNLSAQC 278 (661)
T ss_pred ---CCe-----EEEecccchHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Confidence 111 34455578999999999999999988766 5999999999999999887653
No 23
>KOG4305|consensus
Probab=99.35 E-value=1.1e-12 Score=151.26 Aligned_cols=181 Identities=17% Similarity=0.275 Sum_probs=143.6
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhH----HHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCccc
Q psy1414 304 EEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKE----LDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVV 379 (551)
Q Consensus 304 ~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~----v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~ 379 (551)
.|.+-|++-+|+.|++||+.+.+.|++++... ..+++++ +..+|+|+++|+.++.+||..|-..-.+.. .-.-
T Consensus 337 Qe~I~Eli~tE~d~v~dLel~re~y~kpl~~S-~iipE~~~~~Fi~~vF~n~~~ii~ln~~LL~aL~~r~k~~G--~V~~ 413 (1029)
T KOG4305|consen 337 QEAIFELIYTEEDFVADLELAREIYRKPLLES-SIIPEQERAEFIAHVFGNIEEIIQLNEKLLKALRVRQKLSG--VVEG 413 (1029)
T ss_pred hheeEEEEeehhHHHHHHHHHHHHHhChHhhh-ccCccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCC--ccch
Confidence 35667889999999999999999999999886 4577888 999999999999999999999987654432 5578
Q ss_pred chhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccccccc
Q psy1414 380 IGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSG 459 (551)
Q Consensus 380 IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 459 (551)
||.-|+++. ..|+.|..||.+-+. ..+.+.. +.=.||.++.|++.
T Consensus 414 IGdIll~~l--p~~~~yi~Y~a~q~~--ak~lie~------------------------------k~k~n~~Fa~fl~~- 458 (1029)
T KOG4305|consen 414 IGDILLAWL--PKAEPYISYGANQAY--AKALIEQ------------------------------KKKQNPRFARFLKE- 458 (1029)
T ss_pred HHHHHHHHh--hhhhHHHHHHhhhHH--HHHHHHH------------------------------HhccCchHHHHHHH-
Confidence 999998766 899999999999542 2222100 11235566666553
Q ss_pred cchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCC-CC-CchhHHHHHHHHHHHHHHHHHHHH
Q psy1414 460 GQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLS-PD-KEDRESLIQVEGLLKALQVDLSDS 522 (551)
Q Consensus 460 ~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s-~~-~~D~~~l~~a~~~l~~v~~~i~~~ 522 (551)
...=.+.-+..|.+||.+|.++..+|+++|++++|+| |+ +.|++.|++|+..++.+...+..-
T Consensus 459 ~~~sp~~rkl~L~~FL~kp~sRl~RYpLllr~ILk~TdP~n~~D~q~L~~aI~~ir~l~~~iN~~ 523 (1029)
T KOG4305|consen 459 CESSPESRKLDLVSFLTKPTSRLQRYPLLLREILKHTDPENHPDLQLLKKAIEIIRGLLSEINQG 523 (1029)
T ss_pred HHhChhhhccchhhhhccccchhheeeHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHhChh
Confidence 2223455667899999999999999999999999999 65 599999999999998888777543
No 24
>KOG3523|consensus
Probab=99.25 E-value=1.7e-11 Score=133.69 Aligned_cols=173 Identities=20% Similarity=0.224 Sum_probs=123.5
Q ss_pred HHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccchh
Q psy1414 303 YEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVIGS 382 (551)
Q Consensus 303 y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~IG~ 382 (551)
..|..=|+|..|-.|++-||..+.-|..... ....+++.+...+|+||.|+.+.+..||.+||..++-+- ...-|-.
T Consensus 258 lQEa~FEviTSEaSYl~SLnllv~hF~~s~~-l~~~Ls~~d~~~LFSni~~V~~~Serfl~dLE~r~e~ni--~i~dicD 334 (695)
T KOG3523|consen 258 LQEAKFEVITSEASYLRSLNLLVDHFMNSKE-LRSTLSASDRHHLFSNIQDVREVSERFLCDLEARLEENI--FIDDICD 334 (695)
T ss_pred HHhhhheeehhhHHHHHHHHHHHHHHhhhHH-HHHhcChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCc--hhhHHHH
Confidence 3446668888999999999999988877632 244578999999999999999999999999999987431 3355889
Q ss_pred hHHhhhhhccchhHHHHhhccCCCCchhH-HhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccccccccc
Q psy1414 383 CLEELAEAAEFDVYSRYAKDITYYKCPEK-LLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQ 461 (551)
Q Consensus 383 CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~-l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 461 (551)
|.+++|+ .-|+||..||.|-. ..+. ++++|. ++.+|.+.+..-+..
T Consensus 335 iv~~ha~-~~f~vYv~Y~tNQ~---YQeRT~qrL~~---------------------~n~~F~e~l~rLE~~-------- 381 (695)
T KOG3523|consen 335 IVEDHAA-KHFSVYVKYCTNQV---YQERTLQRLLT---------------------ENPAFREVLERLESS-------- 381 (695)
T ss_pred HHHHhcc-cccceeehhccchH---HHHHHHHHHHh---------------------cChHHHHHHHHHhcC--------
Confidence 9999984 78999999999832 2221 222211 122233333221111
Q ss_pred hhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHH
Q psy1414 462 GFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLK 513 (551)
Q Consensus 462 ~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~ 513 (551)
..+-..+|++||+-|.|+|..|+++++.+++.++. .++|+.-..|+.++.
T Consensus 382 --p~C~~Lpl~SFLiLPmQRITRL~LLl~nIl~rt~~~ser~~~a~~Al~av~ 432 (695)
T KOG3523|consen 382 --PKCQGLPLRSFLILPMQRITRLPLLLDNILKRTEEGSERYETATKALKAVS 432 (695)
T ss_pred --ccccCCCchhhhhchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 11223788999999999999999999999988765 555555555544443
No 25
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.17 E-value=2.4e-11 Score=100.43 Aligned_cols=70 Identities=21% Similarity=0.437 Sum_probs=66.7
Q ss_pred CcccccHhHHHHhhhcCcccc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCc
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQY-KVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYAD 193 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~-Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D 193 (551)
..+.||+.|+.+.+..+.+.. |+++.|.++|.+++||++.+|++.|++.|...++++|+|+||++|++.|
T Consensus 5 ~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 5 LIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp SSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred ccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 678999999999999888875 9999999999999999999999999999999999999999999999875
No 26
>KOG1054|consensus
Probab=99.08 E-value=7.1e-11 Score=128.54 Aligned_cols=71 Identities=20% Similarity=0.347 Sum_probs=57.2
Q ss_pred hcCCCCCcccchhhHHHHHHHhhcchhhhhhhhhcccCccccccCCCccc-chh------h------hhhHHHHHHHHHH
Q psy1414 12 SRHLIGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDVLQQVHPTLTA-RED------A------CLYVESLVLKILA 78 (551)
Q Consensus 12 ~~~P~GSpyR~~is~AILkLqE~G~L~eLK~KWWks~Gkc~c~~~psl~a-sel------g------lGlVlsliVaLLE 78 (551)
-+||+||.+|+.+|.|||+|+|.|.|++|++|||.++|+|......+.++ +.+ | .|++++++++|+|
T Consensus 757 iATp~Gsslr~~vNLAvLkL~E~G~LdKLkNKWWYDkGeC~sg~~ds~~ktsaLsLSnVAGvFYIL~gGl~laMlvALiE 836 (897)
T KOG1054|consen 757 IATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIE 836 (897)
T ss_pred ecCCCCcccccchhhhhhhhcccchHHHhhhhhcccccccCCCCCCCCcchhhcchhhccceeeeehhhHHHHHHHHHHH
Confidence 36999999999999999999999999999999999988763322111111 111 1 8899999999999
Q ss_pred HHhc
Q psy1414 79 MLCS 82 (551)
Q Consensus 79 fL~~ 82 (551)
||++
T Consensus 837 F~yk 840 (897)
T KOG1054|consen 837 FCYK 840 (897)
T ss_pred HHHH
Confidence 9999
No 27
>KOG3522|consensus
Probab=98.99 E-value=1.3e-09 Score=122.79 Aligned_cols=159 Identities=19% Similarity=0.280 Sum_probs=128.5
Q ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccchhhHH
Q psy1414 306 IVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVIGSCLE 385 (551)
Q Consensus 306 vv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~IG~CF~ 385 (551)
++.+++.+|..|+.-|+.++..|...+.....+.++..++.||.||.||-+.+.+||+.|+-... +.+.+.-||+-|+
T Consensus 4 v~~~l~~~Eq~yv~sL~t~vd~y~qpL~~~~~l~~~~~~~eif~~i~ell~~he~fl~~l~s~~~--~w~~qq~vga~~v 81 (925)
T KOG3522|consen 4 VLLQLIDREQSYVESLHTGVDRYVQPLKERKVLIDPRDVDEIFQNIPELLEIHEDFLEQLCSRDQ--QWDEQQKVGASFV 81 (925)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHhhHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHH
Confidence 67789999999999999999999999988777889999999999999999999999999998753 3335688999998
Q ss_pred hhhhh-ccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccccccccchhh
Q psy1414 386 ELAEA-AEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQGFK 464 (551)
Q Consensus 386 e~ae~-~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~ 464 (551)
+.-.. .=-++|+.||||..+- || -.+-+++|.++.|+
T Consensus 82 ~~fSk~~v~~~Y~~y~nn~~~A---------------------~~-------------~l~~~~rpaf~~Fl-------- 119 (925)
T KOG3522|consen 82 YSFSKTAVLAAYSKYVNNFKRA---------------------KC-------------ALRNKKRPAFSKFL-------- 119 (925)
T ss_pred HhhhHHHHHHHHHHHHhchhHH---------------------HH-------------HHHHhcchHHHHHH--------
Confidence 75322 4468999999997541 12 22224455555433
Q ss_pred hhHHhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHH
Q psy1414 465 EAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLKALQVDL 519 (551)
Q Consensus 465 ~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~~v~~~i 519 (551)
+ ++.+| ++-.|-++++ |+|++|. |.|+..|+.|+..+..++..|
T Consensus 120 ~--------l~~kP--r~P~y~lll~-mlkhtp~~Hpdr~~Lq~al~~~~~~ae~i 164 (925)
T KOG3522|consen 120 E--------LMIKP--RFPRYELLLQ-MLKHTPLDHPDRLILQLALTLLETLAEKI 164 (925)
T ss_pred H--------HHhcc--CCchHHHHHH-HhhcCCcCCCchHHHHHHHHhhHHHHHHH
Confidence 3 88999 9999999999 9999985 779999999998877776655
No 28
>KOG3521|consensus
Probab=98.99 E-value=3.3e-09 Score=116.95 Aligned_cols=169 Identities=20% Similarity=0.280 Sum_probs=124.5
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc--CCCCChhHHHHhhhcHHHHHHHHHHH-HHHHHHhhccccCC----C
Q psy1414 304 EEIVHDLVTDEKQHLRDLHMINKVFLEEIVKL--IPPGKCKELDQMFANLMDIYEFSCNL-VGILEDNLEMCNEA----S 376 (551)
Q Consensus 304 ~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~--~~~~~~~~v~~iFgNI~dIyef~~~~-L~~LEd~~e~~~~~----~ 376 (551)
.|.|=|++.||-.|||-|..++.-|.-.+.+. -+++..-+-+.+|+|+..+++.+++| +..||-.++.+... +
T Consensus 179 QeAiWELvtTE~~YIrkL~~~tdlllacL~nlQe~GlL~dVeaerlFsNv~~l~~~n~slW~~~l~P~laksr~TgepLd 258 (846)
T KOG3521|consen 179 QEAIWELVTTEFRYIRKLLRYTDLLLACLLNLQECGLLKDVEAERLFSNVPTLFNVNRSLWLQVLEPILAKSRETGEPLD 258 (846)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 36889999999999999999999999888885 34566778889999999999999774 56666665544322 3
Q ss_pred cccchhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCcccccc
Q psy1414 377 NVVIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPL 456 (551)
Q Consensus 377 ~~~IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~ 456 (551)
....-..|..++ .-|..|+.||-.+ ..|... ..++..+.+++..|
T Consensus 259 ~~~lq~GFl~f~--s~f~pY~~ycle~--s~cm~y-------------------------------~rel~~~n~lFraf 303 (846)
T KOG3521|consen 259 PNYLQNGFLDFG--SWFRPYTNYCLEH--SDCMKY-------------------------------IRELLKENELFRAF 303 (846)
T ss_pred hHHHHHHHHHHH--HhhhHHHHHHHHH--hHHHHH-------------------------------HHHHhccchHHHHH
Confidence 345668998886 8999999999874 345443 33444444433322
Q ss_pred ccccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCCCchhHHHHH
Q psy1414 457 QSGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQ 507 (551)
Q Consensus 457 ~~~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~~~D~~~l~~ 507 (551)
-+-++.-+.+-+.-|-..|.+|.||+.||+++|+..+|.+++.+.+|.+..
T Consensus 304 vtW~Ekqk~c~RqkL~D~l~kPmQRLTKY~LLLkAVlK~t~d~~e~Eai~a 354 (846)
T KOG3521|consen 304 VTWAEKQKNCDRQKLIDTLSKPMQRLTKYPLLLKAVLKVTTDEREREAISA 354 (846)
T ss_pred HHHHHhhhhhhhHHHHHHhhhHHHHhhhhHHHHHHHHhhCCCHHHHHHHHH
Confidence 222222344445667789999999999999999999999998877775443
No 29
>KOG3520|consensus
Probab=98.88 E-value=1.5e-08 Score=118.31 Aligned_cols=188 Identities=16% Similarity=0.236 Sum_probs=133.0
Q ss_pred ccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccc
Q psy1414 301 LTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVI 380 (551)
Q Consensus 301 ~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~I 380 (551)
.-..||+.|++.||+..||-|+.+-++|...|..-. .|+++.+..||-|..|+-++|..|+..|=.-.+-... =-..|
T Consensus 389 iKRQEvI~EL~~TE~~HVRTLKIl~~vF~q~m~~e~-~~~~~~l~~LFP~LdeL~eiH~~f~~~lk~rr~e~~~-vI~~I 466 (1167)
T KOG3520|consen 389 VKRQEVIYELFQTERHHVRTLKILDRVFYQPMMEEL-LFPQEELNKLFPCLDELIEIHSSFLQRLKERRKESLV-VIKRI 466 (1167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhccc-hHHHH
Confidence 345679999999999999999999999999998733 4889999999999999999999999988655432210 01235
Q ss_pred hhhHHhh----hhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCcccccc
Q psy1414 381 GSCLEEL----AEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPL 456 (551)
Q Consensus 381 G~CF~e~----ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~ 456 (551)
|.=.+.+ +.+.-=.+|.++|.++. ..++.+ | +| +=+|+.+..|+
T Consensus 467 GDlLl~~FsGe~ae~L~~~~a~FCs~q~--~ALe~~----K----------~k----------------~~KD~rFq~fv 514 (1167)
T KOG3520|consen 467 GDLLLDQFSGENAERLKKTYAQFCSRQS--IALEQL----K----------TK----------------QAKDKRFQAFV 514 (1167)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhhccH--HHHHHH----H----------HH----------------HhccHHHHHHH
Confidence 5554331 00011158999999963 344432 1 01 11344444444
Q ss_pred ccccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHh
Q psy1414 457 QSGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSP-DKEDRESLIQVEGLLKALQVDLSDSL 523 (551)
Q Consensus 457 ~~~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~-~~~D~~~l~~a~~~l~~v~~~i~~~~ 523 (551)
+.+ ...-.+=+.-||-.++.=.||+.|||++|..|+|+|. +..++|+|.+|++..|.+=.......
T Consensus 515 kka-eS~p~cRRL~lkd~I~~v~QRLTKYPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~aV 581 (1167)
T KOG3520|consen 515 KKA-ESNPVCRRLGLKDCILLVTQRLTKYPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQAV 581 (1167)
T ss_pred HHh-hcchHHHhhcchHHHHHHHHHHhhchHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 2234444678899999999999999999999999998 68899999999986665544444433
No 30
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=98.53 E-value=1.2e-07 Score=82.79 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=72.3
Q ss_pred ccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhc
Q psy1414 126 LVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFY 201 (551)
Q Consensus 126 L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~ 201 (551)
-.||++|++++||-+....+|+..+||-..-.||.+.++|..++++.|+....+|||.+||..|+.+|+.++.|=.
T Consensus 22 trFP~ar~KkIMQ~deDiGKV~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~sdekFdFL~~ 97 (113)
T COG5247 22 TRFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATESDEKFDFLKN 97 (113)
T ss_pred hcCCHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhhhHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999877643
No 31
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=98.24 E-value=4.7e-06 Score=94.89 Aligned_cols=187 Identities=18% Similarity=0.286 Sum_probs=139.3
Q ss_pred cccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc--CC-CCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCC
Q psy1414 300 ELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKL--IP-PGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEAS 376 (551)
Q Consensus 300 ~~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~--~~-~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~ 376 (551)
++-..|++=|.+.|||.||+||..|-.-|.+.+..- ++ -...+=+..-|.||.+||-.+++|++.|-+.=.... =
T Consensus 482 e~kRqe~I~evi~ter~FVk~le~lRD~~~K~L~~sn~Ip~n~r~~Fik~vf~~i~~i~avn~k~~~AL~~rQ~lsP--i 559 (1175)
T COG5422 482 EIKRQEAIYEVIYTERDFVKDLEYLRDTWIKPLEESNIIPENARRNFIKHVFANINEIYAVNSKLLKALTNRQCLSP--I 559 (1175)
T ss_pred HHhhhhhhhheeeeccchhhhhHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcccccc--c
Confidence 445567888999999999999998888888777663 21 234566778899999999999999999987522211 2
Q ss_pred cccchhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCcccccc
Q psy1414 377 NVVIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPL 456 (551)
Q Consensus 377 ~~~IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~ 456 (551)
-+.||.-|+++- ..|+.+..|-.+-+. .+|.++-|+ -.+|.+|.|-
T Consensus 560 v~~I~DifL~~v--P~Fepfiky~a~~~y----------------------------aky~~erek----S~np~fa~Fd 605 (1175)
T COG5422 560 VNGIADIFLDYV--PKFEPFIKYGASQPY----------------------------AKYEFEREK----SVNPNFARFD 605 (1175)
T ss_pred ccchHHHHHhhh--hhhhHHHHhhcccch----------------------------hheeeeecc----ccCcchhhhh
Confidence 367999999976 899999999988432 122222222 2355555442
Q ss_pred ccccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHh
Q psy1414 457 QSGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSP-DKEDRESLIQVEGLLKALQVDLSDSL 523 (551)
Q Consensus 457 ~~~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~-~~~D~~~l~~a~~~l~~v~~~i~~~~ 523 (551)
-. -.-..+..+.-|++||-+|+-+.-.|++++.+.+|++. +.+|+|++-.|+.+++..-..|....
T Consensus 606 ~~-v~rl~~s~k~~ld~yLtk~~tr~~Ry~lL~e~vlkftd~d~~D~e~i~kv~d~~reFlsrl~~es 672 (1175)
T COG5422 606 HE-VERLDESRKLELDGYLTKPTTRLARYPLLLEEVLKFTDPDNPDTEDIPKVIDMLREFLSRLNFES 672 (1175)
T ss_pred HH-HHhcchhhhhcccceecCCcccchhhHHHHhhhcccCCCCCcchhHhHHHHHHHHHHHHHHhHhh
Confidence 21 11135667788999999999999999999999999985 58899999999998888777665544
No 32
>KOG1052|consensus
Probab=98.06 E-value=3.6e-06 Score=95.39 Aligned_cols=70 Identities=36% Similarity=0.442 Sum_probs=54.3
Q ss_pred cCCCCCcccchhhHHHHHHHhhcchhhhhhhhhccc---Ccccccc-CCCcccchh-------hhhhHHHHHHHHHHHHh
Q psy1414 13 RHLIGSPWRDRISLAILELQEKGTIQMLYDKWWKNT---GDVLQQV-HPTLTARED-------ACLYVESLVLKILAMLC 81 (551)
Q Consensus 13 ~~P~GSpyR~~is~AILkLqE~G~L~eLK~KWWks~---Gkc~c~~-~psl~asel-------glGlVlsliVaLLEfL~ 81 (551)
.+|+|||||+.+|.+||+|+|.|.++++++|||+.+ ..|.+.. ....+.+.. ++|+++++++.++|++|
T Consensus 539 ~~~~~Spl~~~is~~Il~l~e~g~l~~~~~kw~~~~~~~~~~~~~~~~~~l~~~~~~g~F~i~~~g~~lal~vfi~E~~~ 618 (656)
T KOG1052|consen 539 AFPKGSPLRSLISRAILKLQETGILQKLKRKWFSKKPCLPKCSQTEKTKALDLESFWGLFLILLVGYLLALLVFILELLY 618 (656)
T ss_pred eecCCCccHHHHHHHHHhhccccHHHHHHHHhccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999764 2332222 001111111 28889999999999999
Q ss_pred c
Q psy1414 82 S 82 (551)
Q Consensus 82 ~ 82 (551)
.
T Consensus 619 ~ 619 (656)
T KOG1052|consen 619 S 619 (656)
T ss_pred H
Confidence 8
No 33
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=97.98 E-value=1.3e-05 Score=75.22 Aligned_cols=65 Identities=28% Similarity=0.519 Sum_probs=59.2
Q ss_pred HHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCccc
Q psy1414 229 IVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPLFI 293 (551)
Q Consensus 229 ~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~e~ 293 (551)
+|++++..|+.|+++|+.++++|..++....+.+++++++.||+||-+|+++...|+.. ++.++.
T Consensus 1 ii~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~ 66 (180)
T smart00325 1 VLKELLQTERNYVRDLKLLVEVFLKPLKKELKLLSPNELETLFGNIEEIYEFHRDFLDELEERIEE 66 (180)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999877899999999999999999999999987 655544
No 34
>KOG1659|consensus
Probab=97.95 E-value=1.2e-05 Score=78.98 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=72.2
Q ss_pred cccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhh
Q psy1414 125 CLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMF 200 (551)
Q Consensus 125 ~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf 200 (551)
.-.||+.||+++||.+....||...+||-+.-.||.+..++|..++..++...-+++|++||..||.+|+.++.|=
T Consensus 11 ~trfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~~FdFLk 86 (224)
T KOG1659|consen 11 KTRFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDPKFDFLK 86 (224)
T ss_pred hccCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccchhHHHH
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999987763
No 35
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=97.90 E-value=2e-05 Score=74.05 Aligned_cols=65 Identities=29% Similarity=0.551 Sum_probs=58.6
Q ss_pred HHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCcc
Q psy1414 228 EIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPLF 292 (551)
Q Consensus 228 ~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~e 292 (551)
+++++++..|+.|+++|+.++++|.+++......+++++++.||+||.+|+++...|+.. ++.++
T Consensus 3 ~vi~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~ 68 (181)
T cd00160 3 EVIKELLQTERNYVRDLKLLVEVFLKPLDKELLPLSPEEVELLFGNIEEIYEFHRIFLKSLEERVE 68 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999988877689999999999999999999999886 54443
No 36
>KOG3531|consensus
Probab=97.82 E-value=2e-06 Score=97.37 Aligned_cols=168 Identities=20% Similarity=0.219 Sum_probs=120.9
Q ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCC------Cccc
Q psy1414 306 IVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEA------SNVV 379 (551)
Q Consensus 306 vv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~------~~~~ 379 (551)
+|.|+..+||.|.+||.-|.--|+-.+... +.........+|.|++-+++++..||+++|..+-.-+-. ....
T Consensus 537 ~~kel~~tERty~kdleV~tt~Frst~v~~-dam~~~~~s~l~~~~~pl~k~h~~fLk~ieeria~weGrsnani~~~~~ 615 (1036)
T KOG3531|consen 537 IVKELSDTERTYLKDLEVITTWFRSTVVKE-DAMPNALKSLLFHNSTPLTKFHEGFLKEIEERIALWEGRSNANIVIEQR 615 (1036)
T ss_pred eecccccccccchhccceeeeeecceeecC-cccccchhhhhccCCChhhHHHHHHHHHHHHHHHhccCCCCCceeeeec
Confidence 689999999999999988876676665542 224466677899999999999999999999986322111 1234
Q ss_pred chhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccccccc
Q psy1414 380 IGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSG 459 (551)
Q Consensus 380 IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 459 (551)
||.--++.+ ..--+|++|.+.|. + .++|+ ++.++-.++|.+..+++++.+
T Consensus 616 igDVmLk~m--~~l~i~~~~~q~h~-----~---------------~l~~~---t~~~k~~~r~~~v~kefelqk----- 665 (1036)
T KOG3531|consen 616 IGDVMLKNM--RSLKITTTTTQRHA-----E---------------TLTTL---TTTSKVLTRLEAVYKEFELQK----- 665 (1036)
T ss_pred cCCcchhhh--hccchhhhhHHhHH-----H---------------HHHHH---hhcchhhhhHHhhhccHHhhh-----
Confidence 777776654 56778999998753 2 23454 344555677777777655432
Q ss_pred cchhhhhHHhcccccchhhHHHHHhhHHHHHHHhc-CCCCCchhHHHHHHHH
Q psy1414 460 GQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRG-LSPDKEDRESLIQVEG 510 (551)
Q Consensus 460 ~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k-~s~~~~D~~~l~~a~~ 510 (551)
-+..++..+|++|+.+.++|.+.|..|.+ +++.++|+.+-..+..
T Consensus 666 ------vcyLP~~~fllkpL~rllhyq~~LeRLc~~~~~~h~d~ad~~a~~~ 711 (1036)
T KOG3531|consen 666 ------VCYLPLNTFLLKPLSRLLHYQLALERLCGHYSPTHEDFADCKAKPN 711 (1036)
T ss_pred ------ccccccchhhhccccHHHHHHHHHHHhhcccCCCccchHHHhhccc
Confidence 11244559999999999999999999987 4677888866655544
No 37
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=97.64 E-value=0.0001 Score=59.60 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=56.9
Q ss_pred cccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhh
Q psy1414 127 VLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAM 190 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai 190 (551)
.||.++|.+++|...-..+|+..+...++-..|.+..++..-|...|...+++.|+++||..|+
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 5899999999998756679999999999999999999999999999999999999999999875
No 38
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=97.40 E-value=0.00022 Score=66.20 Aligned_cols=61 Identities=21% Similarity=0.456 Sum_probs=56.2
Q ss_pred HHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CC
Q psy1414 229 IVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PD 289 (551)
Q Consensus 229 ~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d 289 (551)
+|.+|+..|+.|+++|+.++++|..++.......++.++..||+||-+|+++...|+.. +.
T Consensus 1 vi~ELi~tE~~y~~~L~~l~~~~~~~l~~~~~~l~~~~~~~lf~~i~~l~~~h~~ll~~L~~ 62 (180)
T PF00621_consen 1 VINELIETERSYVEDLEILVEVFLKPLRKRSPLLSEDEIKSLFGNIEELIEIHQQLLESLEE 62 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTSSHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 57899999999999999999999999999877889999999999999999999999876 43
No 39
>KOG4440|consensus
Probab=96.93 E-value=0.00018 Score=80.00 Aligned_cols=91 Identities=20% Similarity=0.364 Sum_probs=62.3
Q ss_pred hcCCCCCcccchhhHHHHHHHhhcchhhhhhhhhcccCccccccCCCcccchhh------------hhhHHHHHHHHHHH
Q psy1414 12 SRHLIGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDVLQQVHPTLTAREDA------------CLYVESLVLKILAM 79 (551)
Q Consensus 12 ~~~P~GSpyR~~is~AILkLqE~G~L~eLK~KWWks~Gkc~c~~~psl~aselg------------lGlVlsliVaLLEf 79 (551)
-||.|||||++.++.|||+..|+|.+++|..+|-.-.|.-+|+.. ..+...+| .|.+.|+++..+|-
T Consensus 771 IGlqK~SPWt~~vtlaIL~~hEsGfMEkLDk~Wi~~Ggpq~c~~~-~k~PatLgl~NMagvFiLV~~Gia~GifLifiEv 849 (993)
T KOG4440|consen 771 IGLQKDSPWTQNVTLAILKSHESGFMEKLDKTWIRYGGPQECDSR-SKAPATLGLENMAGVFILVAGGIAAGIFLIFIEV 849 (993)
T ss_pred cccccCCCCcchhhHHHHHhhhcchHHHHHHHHHhcCCcchhhhh-ccCcccccccccccEEEEEecchhheeeEEEEee
Confidence 489999999999999999999999999999999865442224332 11223333 67778888888998
Q ss_pred HhcCCCCCCcchHHHHHHhhCCCCchhhh
Q psy1414 80 LCSKPSPHTTSDVEERVRRQFPTPIDKWA 108 (551)
Q Consensus 80 L~~~~~pktv~dvEerv~~tFp~pidkWa 108 (551)
.|+ +|.+ +..++.+-.| +-.++|.
T Consensus 850 ~Yk---rh~~-~k~kr~~ia~-~a~~kWr 873 (993)
T KOG4440|consen 850 AYK---RHKD-AKRKRMQIAF-AAVNKWR 873 (993)
T ss_pred hhh---hhhh-hhhHHHHHHH-HHHHHHH
Confidence 888 3442 3333332222 3456675
No 40
>KOG1053|consensus
Probab=96.90 E-value=0.001 Score=76.73 Aligned_cols=51 Identities=22% Similarity=0.438 Sum_probs=40.8
Q ss_pred hcCCCCCcccchhhHHHHHHHhhcchhhhhhhhhcccCccccccCCCcccchhh
Q psy1414 12 SRHLIGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDVLQQVHPTLTAREDA 65 (551)
Q Consensus 12 ~~~P~GSpyR~~is~AILkLqE~G~L~eLK~KWWks~Gkc~c~~~psl~aselg 65 (551)
-++||||||+..|+.||||.+-+|.+++|.++|-.. +||..+....+.+++
T Consensus 772 Ial~k~Spwkr~IdlallQy~gdGeme~Le~~Wltg---ic~n~k~evmSsqLd 822 (1258)
T KOG1053|consen 772 IALPKNSPWKRQIDLALLQYLGDGEMEMLETLWLTG---ICHNSKNEVMSSQLD 822 (1258)
T ss_pred eecCCCCcchhhHHHHHHHHhccchHHHHHHHHhhc---ccccchhhhhhcccC
Confidence 379999999999999999999999999999999843 335555444445554
No 41
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=96.75 E-value=0.0033 Score=51.53 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=57.4
Q ss_pred cccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 127 VLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
.+|..-|.++.+.. -..||+..+.--|+..+||...+|++-|.++++..+++.+|++||..|++
T Consensus 2 ~~p~~~i~ria~~~-Gi~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 2 WLPKETIKDVAESL-GIGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCCHHHHHHHHHHC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 46888899999654 34599999999999999999999999999999999999999999998864
No 42
>KOG3524|consensus
Probab=96.73 E-value=0.0038 Score=70.68 Aligned_cols=169 Identities=19% Similarity=0.193 Sum_probs=115.6
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHh----cCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCccc
Q psy1414 304 EEIVHDLVTDEKQHLRDLHMINKVFLEEIVK----LIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVV 379 (551)
Q Consensus 304 ~evv~eli~tEr~YirdL~~Ii~~f~~~~~~----~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~ 379 (551)
..+..++..+|-.|+-=|+.|+.-|...+.- +-+++-+.++..||||+.+|+..+.+....|+|-... .
T Consensus 386 ~~~~~~~y~tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l~~n-------w 458 (850)
T KOG3524|consen 386 VKFKEALYCTESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDLAQN-------W 458 (850)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHHHHh-------h
Confidence 3567888888888888888887766554433 2345789999999999999999999999988886432 2
Q ss_pred chhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccccccc
Q psy1414 380 IGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSG 459 (551)
Q Consensus 380 IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 459 (551)
+-.| .++- -.|-.|.|-+ ....+.+ --| -+.+|.+-.|+. +
T Consensus 459 ~e~k-~el~-----kayppyvnff--et~ke~~--------------~~c----------------dre~prfhaflK-i 499 (850)
T KOG3524|consen 459 IEAK-EELK-----KAYPPYVNFF--ETIKELF--------------DKC----------------DRENPRFHAFLK-I 499 (850)
T ss_pred HHHH-HHHH-----HhccchhhHH--HHhHHHH--------------HHH----------------hccchHHHHHHH-c
Confidence 3344 2221 1222222211 0111110 001 123333333333 4
Q ss_pred cchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Q psy1414 460 GQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDL 519 (551)
Q Consensus 460 ~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~~~D~~~l~~a~~~l~~v~~~i 519 (551)
.+.|-++.+..|-.++..|||+.=.-.++|++|.| .....|+..+++|..+++.|-..|
T Consensus 500 nq~kpecgRq~l~dlmirpvqrlpsvilllndl~k-~s~N~dk~~leea~kaikev~khI 558 (850)
T KOG3524|consen 500 NQSKPECGRQKLTDLMIRPVQRLPSVILLLNDMAK-KSDNKDKNNLEEAAKAIKEVLKHI 558 (850)
T ss_pred cccchhhhhhcccchhccchhhhhHHHHHHHHHHh-hccCcchhhHHHhhhhHHHHHHHh
Confidence 56788889999999999999999999999999999 445578999999999888887665
No 43
>KOG3519|consensus
Probab=96.44 E-value=0.0022 Score=74.76 Aligned_cols=65 Identities=23% Similarity=0.374 Sum_probs=61.4
Q ss_pred HHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCccc
Q psy1414 229 IVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPLFI 293 (551)
Q Consensus 229 ~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~e~ 293 (551)
++++++..|++|+++||.|+-.|.+++.+...-++.++++.+||||-||+.+.+.|+.. ++.+++
T Consensus 340 vi~E~l~tE~~Yv~~L~~~~~~yl~~~~k~~~~~~~~~~~~~f~ni~~i~~f~~~fl~~L~~~~~~ 405 (756)
T KOG3519|consen 340 VIKELLDTEKNYVKDLNALCEGYLPPQNKRARGLSVNQLDLLFGNIEDILRFQKEFLKTLEQQINP 405 (756)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhccccHHHHHHHccCHHHHHHHHHHHHHHHHHhcch
Confidence 78899999999999999999999999999999999999999999999999999999998 877653
No 44
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=96.25 E-value=0.0071 Score=52.84 Aligned_cols=67 Identities=22% Similarity=0.244 Sum_probs=59.3
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
..+.+|+-=|.|++|+ ....||+++|...+..++|-+..+|.+-|...|..-+++.|+++||++|+.
T Consensus 16 ~~~~Lp~apv~Ri~r~-~~~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~ 82 (91)
T COG2036 16 TDLLLPKAPVRRILRK-AGAERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALK 82 (91)
T ss_pred hhhhcCchHHHHHHHH-HhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 4567788888888864 334599999999999999999999999999999999999999999999874
No 45
>KOG3518|consensus
Probab=95.89 E-value=0.022 Score=59.96 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=58.8
Q ss_pred CCCcchhHHH-HHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCC--CCChhhhHHHhhhHHHHHHhhhccCCC
Q psy1414 219 TTSSELTYEE-IVHDLVTDEKQHLRDLHMINKVFLEEIVKLIP--PGKCKELDQMFANLMDIYEFSLNFKTP 287 (551)
Q Consensus 219 ~~~~~~~~~~-~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~--~~~~~~~~~~f~ni~~i~~~~~~~~~~ 287 (551)
.+.++++|-| ++.+++..||-|+.||+.||+.|..-+..+.. ...-+.+-.+||||-|||-|...++.-
T Consensus 114 l~kgsl~~ldriaieildtertyvedl~aiie~yld~i~edqeklkl~ldaisalfg~ie~ifafnkel~n~ 185 (521)
T KOG3518|consen 114 LPKGSLLHLDRIAIEILDTERTYVEDLKAIIEDYLDCIREDQEKLKLGLDAISALFGCIEDIFAFNKELLND 185 (521)
T ss_pred CCccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhccCcHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4567888877 89999999999999999999999988774433 456788899999999999999988765
No 46
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=95.79 E-value=0.019 Score=49.56 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=58.5
Q ss_pred ccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcC
Q psy1414 128 LPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYA 192 (551)
Q Consensus 128 FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~ 192 (551)
+|..-|.|+.+++. ..|||..+---+..++|....+|+.-|..++...+++.||.+||..|+..
T Consensus 14 i~k~~I~RLarr~G-vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr 77 (85)
T cd00076 14 ITKPAIRRLARRGG-VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR 77 (85)
T ss_pred CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 78889999998654 78999999888999999999999999999999999999999999988753
No 47
>PLN00035 histone H4; Provisional
Probab=95.73 E-value=0.02 Score=51.05 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=59.0
Q ss_pred ccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcC
Q psy1414 128 LPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYA 192 (551)
Q Consensus 128 FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~ 192 (551)
+|..-|.|+.+++. ..|||..+-.-+..+||....+|++-|..+++..+++.|+.+||..|+..
T Consensus 30 ipk~~IrRLARr~G-vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr 93 (103)
T PLN00035 30 ITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
T ss_pred CCHHHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 88999999998654 78999999999999999999999999999999999999999999988753
No 48
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb
Probab=94.86 E-value=0.015 Score=51.76 Aligned_cols=34 Identities=50% Similarity=0.842 Sum_probs=32.5
Q ss_pred hcCCCCCcccchhhHHHHHHHhhcchhhhhhhhh
Q psy1414 12 SRHLIGSPWRDRISLAILELQEKGTIQMLYDKWW 45 (551)
Q Consensus 12 ~~~P~GSpyR~~is~AILkLqE~G~L~eLK~KWW 45 (551)
-++|+|+++++.+|.+|.+|.++|.+.++.+||+
T Consensus 99 ia~~k~~~l~~~vn~~l~~l~~~G~~~~l~~kw~ 132 (134)
T smart00079 99 IAFPKGSPLRDDLSRAILKLSESGELQKLENKWW 132 (134)
T ss_pred EEecCCCHHHHHHHHHHHHHHhcCcHHHHHHhhc
Confidence 4789999999999999999999999999999997
No 49
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=94.54 E-value=0.086 Score=43.88 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=58.3
Q ss_pred ccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCc
Q psy1414 128 LPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYAD 193 (551)
Q Consensus 128 FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D 193 (551)
++-.++..++++..-..|++..|...|..+.|=+..+|++-|...|+..+++.|.++||++++...
T Consensus 2 ~~k~~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r~ 67 (72)
T cd07981 2 LTKRKLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLERN 67 (72)
T ss_pred CcHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 345677888876655689999999999999999999999999999999999999999999998754
No 50
>smart00417 H4 Histone H4.
Probab=94.39 E-value=0.071 Score=44.96 Aligned_cols=62 Identities=16% Similarity=0.115 Sum_probs=54.8
Q ss_pred cccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhh
Q psy1414 127 VLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVA 189 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~A 189 (551)
-+|..-|.|+.++ .-..|||+.+-..+..+||-+..+|+.-|..+++..+++.|+.+||..|
T Consensus 13 gI~k~~IrRLaRr-~GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~a 74 (74)
T smart00417 13 GITKPAIRRLARR-GGVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYA 74 (74)
T ss_pred CCCHHHHHHHHHH-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHheeC
Confidence 3688899999974 4567999999999999999999999999999999999999999998643
No 51
>KOG3520|consensus
Probab=94.35 E-value=0.58 Score=56.50 Aligned_cols=134 Identities=16% Similarity=0.338 Sum_probs=87.2
Q ss_pred HHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCCCCCcccccCCCccccHHHH
Q psy1414 227 EEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTPPDPLFIHETTSSELTYEEI 306 (551)
Q Consensus 227 ~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~~d~~e~~p~~~~~~~y~ev 306 (551)
.|++.+|+..|+.|+|-|-.+-+||.++|.. .-+|++.+|..||.|+-|+-++--.|+ +-
T Consensus 392 QEvI~EL~~TE~~HVRTLKIl~~vF~q~m~~-e~~~~~~~l~~LFP~LdeL~eiH~~f~-------------------~~ 451 (1167)
T KOG3520|consen 392 QEVIYELFQTERHHVRTLKILDRVFYQPMME-ELLFPQEELNKLFPCLDELIEIHSSFL-------------------QR 451 (1167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHhcccHHHHHHHHHHHH-------------------HH
Confidence 5688999999999999999999999999874 468999999999999988665544443 33
Q ss_pred HHHHHhhHHHH-HHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccchhhHH
Q psy1414 307 VHDLVTDEKQH-LRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVIGSCLE 385 (551)
Q Consensus 307 v~eli~tEr~Y-irdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~IG~CF~ 385 (551)
+++-- .|--+ |.++-+++ ...| +--..+.+....+-..-=+.++..+++.+-
T Consensus 452 lk~rr-~e~~~vI~~IGDlL---l~~F----sGe~ae~L~~~~a~FCs~q~~ALe~~K~k~------------------- 504 (1167)
T KOG3520|consen 452 LKERR-KESLVVIKRIGDLL---LDQF----SGENAERLKKTYAQFCSRQSIALEQLKTKQ------------------- 504 (1167)
T ss_pred HHHHH-HhccchHHHHHHHH---HHHc----CchHHHHHHHHHHHHhhccHHHHHHHHHHH-------------------
Confidence 22221 12222 33322222 1111 111244444445544445778888888753
Q ss_pred hhhhhccchhHHHHhhccCCCCchhH
Q psy1414 386 ELAEAAEFDVYSRYAKDITYYKCPEK 411 (551)
Q Consensus 386 e~ae~~eFdiY~~Y~~n~~~~~~~~~ 411 (551)
++..-|.-|.+=|.+ +|.|+..
T Consensus 505 --~KD~rFq~fvkkaeS--~p~cRRL 526 (1167)
T KOG3520|consen 505 --AKDKRFQAFVKKAES--NPVCRRL 526 (1167)
T ss_pred --hccHHHHHHHHHhhc--chHHHhh
Confidence 233578888888877 4678874
No 52
>PTZ00015 histone H4; Provisional
Probab=94.04 E-value=0.1 Score=46.61 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=57.5
Q ss_pred cccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 127 VLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
-+|..-|.|+.+ ..-..||+..+-.-+..+||.+..+|+.-|..+|...+++.||.+||..|+.
T Consensus 30 gI~k~~IrRLar-r~GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlK 93 (102)
T PTZ00015 30 GITKGAIRRLAR-RGGVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALK 93 (102)
T ss_pred CCCHHHHHHHHH-HcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 467788999996 4456899999999999999999999999999999999999999999999874
No 53
>KOG4424|consensus
Probab=93.97 E-value=0.1 Score=58.47 Aligned_cols=60 Identities=22% Similarity=0.464 Sum_probs=54.7
Q ss_pred HHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC
Q psy1414 227 EEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP 287 (551)
Q Consensus 227 ~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~ 287 (551)
.-++.+++.+|++|+..|.++-.||..+..... .++|..+..||+||..||.+-=+|+-+
T Consensus 68 ~~iaqEll~tE~~Yv~~L~lLd~~F~~~L~~~~-~~~~~~v~~lf~nIssi~~fh~qfllp 127 (623)
T KOG4424|consen 68 RHIAQELLDTERTYVKRLHLLDQVFCRRLLEEA-SIPADVITGLFGNISSIHNFHGQFLLP 127 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 448899999999999999999999999977766 899999999999999999999777776
No 54
>KOG3523|consensus
Probab=93.50 E-value=0.12 Score=58.25 Aligned_cols=160 Identities=21% Similarity=0.286 Sum_probs=103.1
Q ss_pred CCccccccccCCCcchhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-
Q psy1414 209 SGSIVHSVSETTSSELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP- 287 (551)
Q Consensus 209 ~ggv~~~~~~~~~~~~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~- 287 (551)
..||+.+. +..+..-.|+.-++|.-|.-|+|-||.++.-|..-..-.. ..++.|=--+||||.|+++.|-.|+..
T Consensus 244 ~sglL~tl---s~eerklQEa~FEviTSEaSYl~SLnllv~hF~~s~~l~~-~Ls~~d~~~LFSni~~V~~~Serfl~dL 319 (695)
T KOG3523|consen 244 ASGLLETL---SPEERKLQEAKFEVITSEASYLRSLNLLVDHFMNSKELRS-TLSASDRHHLFSNIQDVREVSERFLCDL 319 (695)
T ss_pred hccccccc---CHHHHHHHhhhheeehhhHHHHHHHHHHHHHHhhhHHHHH-hcChHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44665433 2244555677888999999999999999999998754443 458999999999999999999999875
Q ss_pred CCCcc----c---------ccCCCccccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc--------CCC--C-----
Q psy1414 288 PDPLF----I---------HETTSSELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKL--------IPP--G----- 339 (551)
Q Consensus 288 ~d~~e----~---------~p~~~~~~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~--------~~~--~----- 339 (551)
|.-+| + |...- .--|-..|.-...-||+|-|= ..=...|++.+... +++ |
T Consensus 320 E~r~e~ni~i~dicDiv~~ha~~~-f~vYv~Y~tNQ~YQeRT~qrL-~~~n~~F~e~l~rLE~~p~C~~Lpl~SFLiLPm 397 (695)
T KOG3523|consen 320 EARLEENIFIDDICDIVEDHAAKH-FSVYVKYCTNQVYQERTLQRL-LTENPAFREVLERLESSPKCQGLPLRSFLILPM 397 (695)
T ss_pred HHHHHhCchhhHHHHHHHHhcccc-cceeehhccchHHHHHHHHHH-HhcChHHHHHHHHHhcCccccCCCchhhhhchH
Confidence 43333 1 22111 113334444444556777662 22234787777653 111 1
Q ss_pred -C----hhHHHHhhhcHH---HHHHHHHHHHHHHHHhhccccC
Q psy1414 340 -K----CKELDQMFANLM---DIYEFSCNLVGILEDNLEMCNE 374 (551)
Q Consensus 340 -~----~~~v~~iFgNI~---dIyef~~~~L~~LEd~~e~~~~ 374 (551)
. +-=+++||.-++ +=|+-+.+=|+.+++.+.-|++
T Consensus 398 QRITRL~LLl~nIl~rt~~~ser~~~a~~Al~av~klVr~CNe 440 (695)
T KOG3523|consen 398 QRITRLPLLLDNILKRTEEGSERYETATKALKAVSKLVRDCNE 440 (695)
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 223444444333 3499999999999998766654
No 55
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=91.93 E-value=0.27 Score=44.84 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=54.8
Q ss_pred hHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCc
Q psy1414 131 EKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYAD 193 (551)
Q Consensus 131 ~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D 193 (551)
.-|+++|++ .-..+++..++..|.-.++-.+.+||+-|..+|+..+++.|+..||++|+..-
T Consensus 5 ~~v~~iLk~-~Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r 66 (117)
T cd07979 5 RVIAAILKS-MGITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSR 66 (117)
T ss_pred HHHHHHHHH-CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457888975 33459999999999999999999999999999999999999999999998753
No 56
>KOG1657|consensus
Probab=90.58 E-value=0.22 Score=50.66 Aligned_cols=78 Identities=10% Similarity=0.120 Sum_probs=71.6
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhc
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFY 201 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~ 201 (551)
....||.+||++.+|.+.....|...|||.++-.+|++..++=..|+..+..++++.+.-.||.-|+.+..-++.|..
T Consensus 71 ~~~~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdia~av~~s~~fdFL~D 148 (236)
T KOG1657|consen 71 KNHILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDIAAAVTQSETFDFLRD 148 (236)
T ss_pred hhccCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHhccCCCccceec
Confidence 467899999999999998889999999999999999999998888889999999999999999999999988887775
No 57
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=89.16 E-value=1.1 Score=38.86 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=55.5
Q ss_pred cccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCC---cccccchhhhhhc
Q psy1414 127 VLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRH---VEVAQQDIKVAMY 191 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~---~rItp~hi~~Ai~ 191 (551)
.||-..+++++. ...++.++..+.+-++++---+..||.|.|-+.-..... .-|.|.||+-|.+
T Consensus 16 ~f~k~~iKr~~~-~~~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~r 82 (85)
T cd08048 16 SFPKAAIKRLIQ-SVTGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYR 82 (85)
T ss_pred hccHHHHHHHHH-HHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHH
Confidence 388888999985 667799999999999999999999999999887777555 6799999998865
No 58
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=86.95 E-value=1.1 Score=44.89 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=66.6
Q ss_pred cccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhc
Q psy1414 125 CLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFY 201 (551)
Q Consensus 125 ~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~ 201 (551)
...+|..||++++|-+....-|++.|||.+|-+-|-+.+|+-=.|--.|+.+++....-.||.-|+...+-++.|+.
T Consensus 107 ~h~LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~kSeMfDFLid 183 (286)
T COG5208 107 DHNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEMFDFLID 183 (286)
T ss_pred hccCcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHhHHhh
Confidence 36789999999999888788999999999999999999887777766677777777888999999999988877775
No 59
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=86.93 E-value=0.94 Score=48.36 Aligned_cols=60 Identities=13% Similarity=0.244 Sum_probs=51.7
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhc
Q psy1414 141 VLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFY 201 (551)
Q Consensus 141 ~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~ 201 (551)
.-..|++..+...|+..+||-..+|++-|.+.++..|+++++++||..|++.-.. .-+++
T Consensus 12 ~Gi~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~-eplyG 71 (343)
T cd08050 12 LGIDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNV-EPLYG 71 (343)
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCC-CcccC
Confidence 3345999999999999999999999999999999999999999999999876432 34444
No 60
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=85.90 E-value=1.7 Score=35.87 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=45.8
Q ss_pred cccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 127 VLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
.||.+-|...-.. .-...++..+.-.||-=+||-..+|+.-|.+..+..|+++.|++||..|++
T Consensus 3 ~~~~esvk~iAes-~Gi~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 3 VFSQESVKDIAES-LGISNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp ---HHHHHHHHHH-TT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred cCCHHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 3566666555421 112368888999999999999999999999999999999999999998874
No 61
>PLN00158 histone H2B; Provisional
Probab=85.61 E-value=1.6 Score=39.86 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=50.6
Q ss_pred HhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 130 VEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 130 V~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
-..|.+.|++-.-..-|++.+.--+...+..+...|-.-|+.-++-+++..||+++||.|++
T Consensus 30 ~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvr 91 (116)
T PLN00158 30 KIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVR 91 (116)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 45688889765445578888877788888888888888888889889999999999999986
No 62
>KOG4305|consensus
Probab=85.55 E-value=0.43 Score=57.11 Aligned_cols=86 Identities=13% Similarity=0.284 Sum_probs=65.9
Q ss_pred HHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhh----hHHHhhhHHHHHHhhhccCCC-------CCCccc---
Q psy1414 228 EIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKE----LDQMFANLMDIYEFSLNFKTP-------PDPLFI--- 293 (551)
Q Consensus 228 ~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~----~~~~f~ni~~i~~~~~~~~~~-------~d~~e~--- 293 (551)
|.+.++|-.|+.|++||.++-+.|+.++... .+++.++ +..+|+|+.+|+.+--+||.. .-+|||
T Consensus 338 e~I~Eli~tE~d~v~dLel~re~y~kpl~~S-~iipE~~~~~Fi~~vF~n~~~ii~ln~~LL~aL~~r~k~~G~V~~IGd 416 (1029)
T KOG4305|consen 338 EAIFELIYTEEDFVADLELAREIYRKPLLES-SIIPEQERAEFIAHVFGNIEEIIQLNEKLLKALRVRQKLSGVVEGIGD 416 (1029)
T ss_pred heeEEEEeehhHHHHHHHHHHHHHhChHhhh-ccCccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCccchHHH
Confidence 4566788899999999999999999999887 7888999 999999999999988666543 125555
Q ss_pred -----ccCCCccccHHH---HHHHHHhhH
Q psy1414 294 -----HETTSSELTYEE---IVHDLVTDE 314 (551)
Q Consensus 294 -----~p~~~~~~~y~e---vv~eli~tE 314 (551)
-|...+-..|-- .+++++..|
T Consensus 417 Ill~~lp~~~~yi~Y~a~q~~ak~lie~k 445 (1029)
T KOG4305|consen 417 ILLAWLPKAEPYISYGANQAYAKALIEQK 445 (1029)
T ss_pred HHHHHhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 444444455543 467777666
No 63
>smart00428 H3 Histone H3.
Probab=84.36 E-value=2.5 Score=38.08 Aligned_cols=75 Identities=13% Similarity=0.207 Sum_probs=57.2
Q ss_pred HHHhcccccCcccccHhHHHHhhhc---Ccc---ccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhh
Q psy1414 115 AIEKSKKKISCLVLPVEKIHYLLSK---DVL---QYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKV 188 (551)
Q Consensus 115 al~k~~~k~a~L~FPV~ri~r~Lk~---~~~---~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~ 188 (551)
.+.+.-+. ..|.+|-.-+.|+.++ ... ..|+.++|...|-.+.|....++.|-|..-|...++..|+|+|+++
T Consensus 18 EIr~yQks-t~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~L 96 (105)
T smart00428 18 EIRKYQKS-TDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQL 96 (105)
T ss_pred HHHHHccC-cccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHH
Confidence 34444443 5566655555555543 111 4599999999999999999999999999999999999999999998
Q ss_pred hh
Q psy1414 189 AM 190 (551)
Q Consensus 189 Ai 190 (551)
|.
T Consensus 97 a~ 98 (105)
T smart00428 97 AR 98 (105)
T ss_pred HH
Confidence 84
No 64
>smart00427 H2B Histone H2B.
Probab=83.09 E-value=2.4 Score=37.14 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=48.3
Q ss_pred HHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 132 KIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 132 ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
.|.+.||+-.-..-|++.+.--+...+..+...|-.-|..-++.++++.||+++||.|++
T Consensus 6 Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvr 65 (89)
T smart00427 6 YIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVR 65 (89)
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 467778654444578888877788888888888888888888889999999999999985
No 65
>KOG4240|consensus
Probab=82.76 E-value=2.2 Score=51.28 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=47.3
Q ss_pred HHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCC---hhhhHHHhhhHHHHHHhhh
Q psy1414 226 YEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGK---CKELDQMFANLMDIYEFSL 282 (551)
Q Consensus 226 ~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~---~~~~~~~f~ni~~i~~~~~ 282 (551)
...+++++|..||-|+|+|.--..+|+-+|.+.-.... =+=.+.||+|+.+||++-=
T Consensus 633 ~~~~m~ellqterayv~~L~~~l~~y~~e~d~~~~~i~~~~Lnk~~~ifgnmeeiy~fhn 692 (1025)
T KOG4240|consen 633 KRHVMRELLQTERAYVRDLEECLEGYLAEMDSPMKEILPPLLNKKEIIFGNMEEIYEFHN 692 (1025)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhccccccchHHHHHhhHHHHHHHHh
Confidence 46688999999999999999999999999887633322 2467899999999999853
No 66
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=80.47 E-value=2.6 Score=36.88 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=46.4
Q ss_pred cccHhHHHHhhhcCccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccchhhhhhc
Q psy1414 127 VLPVEKIHYLLSKDVLQ-YKVEMNVSIYITAVLEYISADILKLAGNYVKNIRH-VEVAQQDIKVAMY 191 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~-~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~-~rItp~hi~~Ai~ 191 (551)
.||=+.|.++++. ..+ +-|+..+.+.++++--.+..||.|.|-........ .-|.|.|++-|.+
T Consensus 23 ~~~k~~ikkli~~-~~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~r 88 (90)
T PF04719_consen 23 SFNKAAIKKLINQ-VLGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYR 88 (90)
T ss_dssp ---HHHHHHHHHH-HHS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 5888899999964 556 89999999999999999999999999877665443 3799999998754
No 67
>KOG3219|consensus
Probab=79.86 E-value=1.8 Score=42.84 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=55.4
Q ss_pred cccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccchhhhhhc
Q psy1414 125 CLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHV-EVAQQDIKVAMY 191 (551)
Q Consensus 125 ~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~-rItp~hi~~Ai~ 191 (551)
...||-+.|++|++ ...+.-|+..+.+.++++-.-+..||.|.|......-+.. -+.|.||+-|.+
T Consensus 110 rs~f~Ka~iKkL~~-~itg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~r 176 (195)
T KOG3219|consen 110 RSAFPKAQIKKLMS-SITGQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYR 176 (195)
T ss_pred HhcCCHHHHHHHHH-HHhCCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 35899999999995 5666669999999999999999999999997766554444 599999998875
No 68
>smart00427 H2B Histone H2B.
Probab=77.96 E-value=3.3 Score=36.22 Aligned_cols=71 Identities=27% Similarity=0.398 Sum_probs=53.6
Q ss_pred ccccccCCCcccchhhhhhHHHHHHHHHHHHhcC-------CCCCC--cchHHHHHHhhCCCCchhhhhHHHHHHHHhcc
Q psy1414 50 DVLQQVHPTLTAREDACLYVESLVLKILAMLCSK-------PSPHT--TSDVEERVRRQFPTPIDKWAMHEAKEAIEKSK 120 (551)
Q Consensus 50 kc~c~~~psl~aselglGlVlsliVaLLEfL~~~-------~~pkt--v~dvEerv~~tFp~pidkWal~~a~~al~k~~ 120 (551)
++..|+||....+..+.+...+++--++|-+... ..+.| ..++..+++..+|..+.++|+.++.+|+.|..
T Consensus 9 kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~LpgeLakhAvsEgtkAv~k~~ 88 (89)
T smart00427 9 KVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVSEGTKAVTKYS 88 (89)
T ss_pred HHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhc
Confidence 4566888888777777777777777777766532 12333 33667789999999999999999999999864
No 69
>PTZ00463 histone H2B; Provisional
Probab=74.84 E-value=6 Score=36.24 Aligned_cols=61 Identities=15% Similarity=0.083 Sum_probs=46.3
Q ss_pred hHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 131 EKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 131 ~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
-.|.+.|++-.-..-|++.+.--+...+.=+...|-.-|++-++-+++..||+++||.|++
T Consensus 32 ~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvr 92 (117)
T PTZ00463 32 LYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIR 92 (117)
T ss_pred HHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 3588888754444567777766666666666666777778888888999999999999986
No 70
>PTZ00463 histone H2B; Provisional
Probab=70.06 E-value=6.1 Score=36.18 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=54.4
Q ss_pred ccccccCCCcccchhhhhhHHHHHHHHHHHHhcC-------CCCCC--cchHHHHHHhhCCCCchhhhhHHHHHHHHhcc
Q psy1414 50 DVLQQVHPTLTAREDACLYVESLVLKILAMLCSK-------PSPHT--TSDVEERVRRQFPTPIDKWAMHEAKEAIEKSK 120 (551)
Q Consensus 50 kc~c~~~psl~aselglGlVlsliVaLLEfL~~~-------~~pkt--v~dvEerv~~tFp~pidkWal~~a~~al~k~~ 120 (551)
++..++||..+.+..+.+.+.+++--++|-+... ..+.| ..++...++.++|..+.++|+.++.+|+.|..
T Consensus 36 KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLlLpGELaKhAvsEGtkAv~k~~ 115 (117)
T PTZ00463 36 KVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGELAKHAVSEGTKAVTKFT 115 (117)
T ss_pred HHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhcccHHHHHhhhhHHHHHHHHhh
Confidence 4667889888877777777777777777766531 12333 33677889999999999999999999999875
Q ss_pred c
Q psy1414 121 K 121 (551)
Q Consensus 121 ~ 121 (551)
.
T Consensus 116 ~ 116 (117)
T PTZ00463 116 S 116 (117)
T ss_pred c
Confidence 4
No 71
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=68.40 E-value=10 Score=31.79 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=48.4
Q ss_pred HHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcC
Q psy1414 134 HYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYA 192 (551)
Q Consensus 134 ~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~ 192 (551)
.++|+ ..-..+++.+|.--|+-+++=...++.+.+-+++...+++..++.||..|+.+
T Consensus 13 aqil~-~~Gf~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~ 70 (77)
T smart00576 13 AQILE-SAGFDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALEN 70 (77)
T ss_pred HHHHH-HcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34454 23346899999999999999999999999999999999999999999988754
No 72
>KOG2996|consensus
Probab=66.14 E-value=16 Score=41.80 Aligned_cols=103 Identities=14% Similarity=0.226 Sum_probs=70.6
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCcccccCCCccccHHHHHHHH
Q psy1414 232 DLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPLFIHETTSSELTYEEIVHDL 310 (551)
Q Consensus 232 ~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~e~~p~~~~~~~y~evv~el 310 (551)
++-..|..|.+-|--|+|-|.++.-. ..+|+|.+.||.||-||-.+--.|+.. +++| .+.+.++.++|
T Consensus 204 Ei~~TE~kY~~tL~sI~k~f~~PLk~---~l~~ad~~ivFiNieel~klHt~ll~ei~~sv----~v~~~qtl~qV---- 272 (865)
T KOG2996|consen 204 EIQQTEEKYTQTLESIEKTFMEPLKR---FLPPADYNIVFINIEELNKLHTALLAEIEYSV----KVAGGQTLYQV---- 272 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---cCChhhhheeEecHHHHHHHHHHHHHHhHHHh----hCCCcccHHHH----
Confidence 44457899999999999999998654 457899999999999999999999986 6554 22222344443
Q ss_pred HhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHh
Q psy1414 311 VTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDN 368 (551)
Q Consensus 311 i~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~ 368 (551)
|+ .|+++|.-- ...-+|+++--+..-.+|+.=||.
T Consensus 273 ------Fi--------kyker~liY---------G~YCS~~e~a~k~ln~llktrEdv 307 (865)
T KOG2996|consen 273 ------FI--------KYKERLLIY---------GKYCSNVESARKLLNELLKTREDV 307 (865)
T ss_pred ------HH--------HHHHHHhhh---------hhhhccchHHHHHHHHHHHHhHHH
Confidence 11 244444321 125667777666666677766664
No 73
>PLN00158 histone H2B; Provisional
Probab=63.63 E-value=9.8 Score=34.87 Aligned_cols=71 Identities=25% Similarity=0.391 Sum_probs=53.3
Q ss_pred ccccccCCCcccchhhhhhHHHHHHHHHHHHhcC-------CCCCC--cchHHHHHHhhCCCCchhhhhHHHHHHHHhcc
Q psy1414 50 DVLQQVHPTLTAREDACLYVESLVLKILAMLCSK-------PSPHT--TSDVEERVRRQFPTPIDKWAMHEAKEAIEKSK 120 (551)
Q Consensus 50 kc~c~~~psl~aselglGlVlsliVaLLEfL~~~-------~~pkt--v~dvEerv~~tFp~pidkWal~~a~~al~k~~ 120 (551)
++..|+||..+.+..+.+...+++--++|-+-.. ..+.| ..++...|+..+|..+.++|+.++.+|+.|..
T Consensus 35 kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLvLpgELaKhAvsEGtkAv~k~~ 114 (116)
T PLN00158 35 KVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLILPGELAKHAVSEGTKAVTKFT 114 (116)
T ss_pred HHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Confidence 5667889888887777777777777777666521 12333 34666789999999999999999999998864
No 74
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=62.78 E-value=17 Score=30.88 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=43.0
Q ss_pred cccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHH---HHHHhcCCcccccchhhhhhcCchHH
Q psy1414 125 CLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAG---NYVKNIRHVEVAQQDIKVAMYADKVL 196 (551)
Q Consensus 125 ~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAg---n~a~~~k~~rItp~hi~~Ai~~D~eL 196 (551)
.+.+-|++|-.- ......+ .-+|-|++|+-|-.-..+-.+|. -.|+.-+++.|++.|+.+..+.++.|
T Consensus 6 al~~~v~ki~ee---~~~~~~~-~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~Rrn~~L 76 (76)
T PF15630_consen 6 ALWYTVGKIVEE---EAKEKGV-EVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLARRNPSL 76 (76)
T ss_dssp HHHHHHHHHHHH---CCCCTTS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTTT-HHH
T ss_pred HHHHHHHHHHHH---HHhccCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhhcCCCC
Confidence 355666665422 1111122 24567888888877777766663 45677789999999999999999876
No 75
>KOG3522|consensus
Probab=61.25 E-value=21 Score=42.46 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=44.4
Q ss_pred HhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCC
Q psy1414 231 HDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKT 286 (551)
Q Consensus 231 ~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~ 286 (551)
-.++..|+.|+.-|.-+..-|..+.--++.+-+|.+++.||.||-||-|.-=.|+.
T Consensus 6 ~~l~~~Eq~yv~sL~t~vd~y~qpL~~~~~l~~~~~~~eif~~i~ell~~he~fl~ 61 (925)
T KOG3522|consen 6 LQLIDREQSYVESLHTGVDRYVQPLKERKVLIDPRDVDEIFQNIPELLEIHEDFLE 61 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHhhHHHHHHHHHHHH
Confidence 34666777777777777777777766677788999999999999988877777765
No 76
>KOG3521|consensus
Probab=57.97 E-value=82 Score=36.91 Aligned_cols=135 Identities=18% Similarity=0.246 Sum_probs=80.3
Q ss_pred chhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChh--hhHHHhhhHHHHHHhhhccCCCCCCcccccCCCcc
Q psy1414 223 ELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCK--ELDQMFANLMDIYEFSLNFKTPPDPLFIHETTSSE 300 (551)
Q Consensus 223 ~~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~--~~~~~f~ni~~i~~~~~~~~~~~d~~e~~p~~~~~ 300 (551)
+..-.|+|=++++.|..|||.|-.+++.|.--....-..+-=- |-+.+|+|+-.|+++-.+|-.
T Consensus 175 ~~kqQeAiWELvtTE~~YIrkL~~~tdlllacL~nlQe~GlL~dVeaerlFsNv~~l~~~n~slW~-------------- 240 (846)
T KOG3521|consen 175 SCKQQEAIWELVTTEFRYIRKLLRYTDLLLACLLNLQECGLLKDVEAERLFSNVPTLFNVNRSLWL-------------- 240 (846)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhchHHHHHHHHHHHH--------------
Confidence 3444678889999999999999999999987766655533333 445699999998876543322
Q ss_pred ccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccc
Q psy1414 301 LTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVI 380 (551)
Q Consensus 301 ~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~I 380 (551)
+++.-+++.-|.= -.++.+..+-.=|-.+..+|+-=.+|=-.-++| .
T Consensus 241 ----~~l~P~laksr~T------------------gepLd~~~lq~GFl~f~s~f~pY~~ycle~s~c-----------m 287 (846)
T KOG3521|consen 241 ----QVLEPILAKSRET------------------GEPLDPNYLQNGFLDFGSWFRPYTNYCLEHSDC-----------M 287 (846)
T ss_pred ----HHHHHHHHHHHhh------------------CCCCChHHHHHHHHHHHHhhhHHHHHHHHHhHH-----------H
Confidence 1211111111110 123344444444444444455444554444444 3
Q ss_pred hhhHHhhhhhccchhHHHHhhccC
Q psy1414 381 GSCLEELAEAAEFDVYSRYAKDIT 404 (551)
Q Consensus 381 G~CF~e~ae~~eFdiY~~Y~~n~~ 404 (551)
-.|=+.+-+.+-|..|.++|.-+.
T Consensus 288 ~y~rel~~~n~lFrafvtW~Ekqk 311 (846)
T KOG3521|consen 288 KYIRELLKENELFRAFVTWAEKQK 311 (846)
T ss_pred HHHHHHhccchHHHHHHHHHHhhh
Confidence 445455556678999999998753
No 77
>KOG2070|consensus
Probab=56.56 E-value=24 Score=39.71 Aligned_cols=68 Identities=16% Similarity=0.326 Sum_probs=56.5
Q ss_pred CCCcchhHHH-HHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC
Q psy1414 219 TTSSELTYEE-IVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP 287 (551)
Q Consensus 219 ~~~~~~~~~~-~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~ 287 (551)
++.....|++ +.++++..|+.|..+|--++--|.+++-.. .+.+..|+-.+-+|.-+||-|.-.+.-.
T Consensus 94 t~~~~~~Yr~vVLk~~lesEkey~~eLq~lL~t~L~Plq~s-~iLs~~ey~~LmgNfeeI~t~~qdL~~q 162 (661)
T KOG2070|consen 94 TTAINKSYRNVVLKNILESEKEYSKELQTLLSTYLRPLQTS-EILSSAEYSYLMGNFEEICTFQQDLVQQ 162 (661)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cccchHHHHHHhcchHHhHhHHHHHHHH
Confidence 3345688999 668999999999999999999999998755 4558889999999999999887665543
No 78
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=49.06 E-value=44 Score=27.76 Aligned_cols=62 Identities=13% Similarity=0.211 Sum_probs=46.6
Q ss_pred hHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcC
Q psy1414 131 EKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYA 192 (551)
Q Consensus 131 ~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~ 192 (551)
.+++.++++=--..+++..+--.|.-+-+=+..+|+..|...||.-+...+.++||++.+..
T Consensus 3 ~~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler 64 (68)
T PF03847_consen 3 RKLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLER 64 (68)
T ss_dssp HHHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHh
Confidence 35677776544456889999999999999999999999999999888888999999987653
No 79
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=46.53 E-value=11 Score=28.16 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=27.6
Q ss_pred HHHHHHhcCCcccccchhhhhhcCch--HHHhhhcC
Q psy1414 169 AGNYVKNIRHVEVAQQDIKVAMYADK--VLMDMFYQ 202 (551)
Q Consensus 169 Agn~a~~~k~~rItp~hi~~Ai~~D~--eL~~Lf~~ 202 (551)
|-+.|+..++..|+|.|+-+|+-.++ ....+++.
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~ 36 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKK 36 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHH
Confidence 45788899999999999999988776 77777774
No 80
>KOG0870|consensus
Probab=46.06 E-value=38 Score=32.97 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=42.7
Q ss_pred CcccccHhHHHHhhhcCccccc---cccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYK---VEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~R---v~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
.-|.||-+-|-|+.| +.+... |+..|..-++-.---+...+.-.|++.|++.+|+.|++.|+--|+.
T Consensus 7 ~dl~lP~AiI~rlvk-e~l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~ 76 (172)
T KOG0870|consen 7 EDLNLPNAIITRLVK-EVLPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALD 76 (172)
T ss_pred HHhhccHHHHHHHHH-HhCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence 457889888887774 444332 3333333332222223344456789999999999999999886653
No 81
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=45.48 E-value=1.2e+02 Score=30.63 Aligned_cols=67 Identities=18% Similarity=0.347 Sum_probs=48.1
Q ss_pred HHHHHHhhHHHHHHHHhHH---HHHHHHHHHhcCC----CCChhHHHHhhhcHHHHH------------HHHHHHHHHHH
Q psy1414 306 IVHDLVTDEKQHLRDLHMI---NKVFLEEIVKLIP----PGKCKELDQMFANLMDIY------------EFSCNLVGILE 366 (551)
Q Consensus 306 vv~eli~tEr~YirdL~~I---i~~f~~~~~~~~~----~~~~~~v~~iFgNI~dIy------------ef~~~~L~~LE 366 (551)
-.+-+|.--..|.+=++-. .++|.+.+.+... ..+..++..+.=+|.|+| .|++.+|..||
T Consensus 21 ~lrnlv~lGk~Y~kA~~a~t~aa~~Yf~Al~KiGe~A~~s~~s~~LG~vLmqisev~r~i~~~le~~lk~FH~ell~~LE 100 (215)
T cd07644 21 ALENLVYLGNNYLRAFHALSEAAEVYFSAIAKIGEQALQSLTSQSLGEILIQMSETQRKLSADLEVVFQTFHVDLLQHMD 100 (215)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777779999988777 6789999888522 234444554444577776 58899999999
Q ss_pred Hhhccc
Q psy1414 367 DNLEMC 372 (551)
Q Consensus 367 d~~e~~ 372 (551)
+.+|+.
T Consensus 101 kk~elD 106 (215)
T cd07644 101 KNTKLD 106 (215)
T ss_pred HHHHHh
Confidence 998875
No 82
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=40.99 E-value=75 Score=26.69 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=43.9
Q ss_pred cHhHHHHhhhcCcc---ccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cccchhhh
Q psy1414 129 PVEKIHYLLSKDVL---QYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVE-VAQQDIKV 188 (551)
Q Consensus 129 PV~ri~r~Lk~~~~---~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~r-Itp~hi~~ 188 (551)
|-.-|.|+|+ ..+ .-||+..|---++..++-++.|..--|...+++.+... |..+|+..
T Consensus 1 p~~li~rll~-~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEk 63 (72)
T PF09415_consen 1 PPELIARLLH-EHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEK 63 (72)
T ss_dssp -CHHHHHHHC-TTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHH
T ss_pred ChHHHHHHHH-HHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 4556788887 333 24999999888888999999998888888888888777 88888874
No 83
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=39.79 E-value=16 Score=37.90 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=29.7
Q ss_pred cCCCCCc-ccchhhHHHHHHHhhcchhhhhhhhhc
Q psy1414 13 RHLIGSP-WRDRISLAILELQEKGTIQMLYDKWWK 46 (551)
Q Consensus 13 ~~P~GSp-yR~~is~AILkLqE~G~L~eLK~KWWk 46 (551)
.+|+++| +++.++.++.+++++|.++++.+||..
T Consensus 237 a~~k~~~~L~~~in~~L~~l~~~G~l~~i~~kw~~ 271 (302)
T PRK10797 237 MLRKDDPQFKKLMDDTIAQAQTSGEAEKWFDKWFK 271 (302)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcC
Confidence 3566665 899999999999999999999999985
No 84
>PLN00160 histone H3; Provisional
Probab=39.11 E-value=55 Score=29.21 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=52.4
Q ss_pred HHhcccccCcccccHhHHHHhhhcC-----ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhh
Q psy1414 116 IEKSKKKISCLVLPVEKIHYLLSKD-----VLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAM 190 (551)
Q Consensus 116 l~k~~~k~a~L~FPV~ri~r~Lk~~-----~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai 190 (551)
+.+.-+. ..|.+|-.-+.|+.++= ....|..++|-.-|--+-|.....++|-|.--|...|+..|.|+|+++|.
T Consensus 11 IR~yQks-t~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~ 89 (97)
T PLN00160 11 IKMYQKS-TDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLAR 89 (97)
T ss_pred HHHHccc-hhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHH
Confidence 3444333 55666555555555431 12368888888888888888888889988777777888899999999884
No 85
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=38.80 E-value=1.7e+02 Score=29.86 Aligned_cols=67 Identities=16% Similarity=0.317 Sum_probs=48.7
Q ss_pred HHHHHHhhHHHHHHHHhHH---HHHHHHHHHhcCC----CCChhHHHHhhhcHHHHH------------HHHHHHHHHHH
Q psy1414 306 IVHDLVTDEKQHLRDLHMI---NKVFLEEIVKLIP----PGKCKELDQMFANLMDIY------------EFSCNLVGILE 366 (551)
Q Consensus 306 vv~eli~tEr~YirdL~~I---i~~f~~~~~~~~~----~~~~~~v~~iFgNI~dIy------------ef~~~~L~~LE 366 (551)
-.|.++.--+.|.+=|+-. .++|.+.+.+... ..+..++......|.|.| .|++.+|.-||
T Consensus 21 ~lrnLv~lGk~Y~KA~~a~~~A~~~y~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE 100 (226)
T cd07645 21 GLRNLINLGKNYEKAVNAMVLAGKAYYDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELE 100 (226)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777788998877766 6689998887522 234456666666688887 47888899999
Q ss_pred Hhhccc
Q psy1414 367 DNLEMC 372 (551)
Q Consensus 367 d~~e~~ 372 (551)
+.+|+.
T Consensus 101 ~k~elD 106 (226)
T cd07645 101 RKTDLD 106 (226)
T ss_pred HHHHHH
Confidence 988765
No 86
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=36.72 E-value=25 Score=30.77 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH---HHHHHHhcCCcccccchhhhhhcCchHHH
Q psy1414 157 VLEYISADILKL---AGNYVKNIRHVEVAQQDIKVAMYADKVLM 197 (551)
Q Consensus 157 VLEYLtaeILEL---Agn~a~~~k~~rItp~hi~~Ai~~D~eL~ 197 (551)
|-|+++..|.++ |.+.|...+.++|+++|+.-++++|+.-.
T Consensus 28 vE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~Kl 71 (93)
T PF02269_consen 28 VEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKKL 71 (93)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHHHH
Confidence 334444444444 44555555567899999999999998643
No 87
>KOG0869|consensus
Probab=33.69 E-value=83 Score=30.48 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=40.4
Q ss_pred cccHhHHHHhhhcCccc-cccccchhHHHHH-HHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 127 VLPVEKIHYLLSKDVLQ-YKVEMNVSIYITA-VLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~-~Rv~~~a~VyLaA-VLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
-+|+.-|-|+||+.--. .+|+..|--.+-- |-||+. =|---|..-+..-++|.|+-.||-+||.
T Consensus 32 ~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfIS-FvT~EAsekC~~EkRKTIngdDllwAm~ 97 (168)
T KOG0869|consen 32 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFIS-FVTGEASEKCQREKRKTINGDDLLWAMS 97 (168)
T ss_pred hccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhcCcccHHHHHHHHH
Confidence 45999999999865444 4888777543221 222221 1222244555566888999999999875
No 88
>KOG0689|consensus
Probab=33.65 E-value=21 Score=39.84 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=42.4
Q ss_pred HHHhHhHhHHHHHHHHHHHHHHHHHHHHhhC--CCCChhhhHHHhhhHHHHHHhhhcc
Q psy1414 229 IVHDLVTDEKQHLRDLHMINKVFLEEIVKLI--PPGKCKELDQMFANLMDIYEFSLNF 284 (551)
Q Consensus 229 ~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~--~~~~~~~~~~~f~ni~~i~~~~~~~ 284 (551)
+..++++.|+.|+++|--++-+|-+.+.... ....-+ -+.||+||..||++-...
T Consensus 66 v~~e~iaTE~~yv~~l~~~~~~y~~~~~~~~lp~~lrg~-~~iifgni~~i~~~h~~~ 122 (448)
T KOG0689|consen 66 VLDELIATEVDYVKDLKSVVENYIELLDAEDLPEDLRGK-DKIIFGNIKEIYEFHKKE 122 (448)
T ss_pred HHHHHHHHHHhhhhccccccccccccccccCCChhccCC-ceeeechHHHHHHhhccc
Confidence 4567999999999999999998888766542 111111 467999999999998887
No 89
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=32.87 E-value=3.4e+02 Score=29.62 Aligned_cols=34 Identities=6% Similarity=0.150 Sum_probs=29.5
Q ss_pred CChhHHHHhh-hcHHHHHHHHHHHHHHHHHhhccc
Q psy1414 339 GKCKELDQMF-ANLMDIYEFSCNLVGILEDNLEMC 372 (551)
Q Consensus 339 ~~~~~v~~iF-gNI~dIyef~~~~L~~LEd~~e~~ 372 (551)
...+++..+| .|+..+-+.+.+||..|++.++..
T Consensus 110 ~~~peV~~~~~~~l~~Lr~i~~~fl~~I~~S~~~~ 144 (360)
T cd05133 110 LSHEEVRTRLDASIRNMRTVTDKFLSAIVSSVDKI 144 (360)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhC
Confidence 4578888888 999999999999999999998654
No 90
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=31.74 E-value=41 Score=31.37 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=39.4
Q ss_pred HhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCc
Q psy1414 130 VEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYAD 193 (551)
Q Consensus 130 V~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D 193 (551)
+--|+.+|+...-. .-...++.-|.-..=--|.+||+=|-.+|...+++.|+..|+++||..-
T Consensus 15 a~~i~~iL~~~Gv~-~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r 77 (129)
T PF02291_consen 15 ARVIHLILKSMGVT-EYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSR 77 (129)
T ss_dssp HHHHHHHHHHTT----B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence 55677777653221 1222333223222223478899999999999999999999999999843
No 91
>COG5398 Heme oxygenase [Inorganic ion transport and metabolism]
Probab=30.91 E-value=1.3e+02 Score=30.56 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=46.4
Q ss_pred cCCCccccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q psy1414 295 ETTSSELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNL 369 (551)
Q Consensus 295 p~~~~~~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~ 369 (551)
......-+|+|+- +|+.|-- .||..+.+ . +++..+.+.|..-..++|.|+.+...+||..+
T Consensus 148 ~~gtaFy~F~dl~-----dek~fK~-------~YR~~ld~-l-~ldeAt~~rIvdeAn~aF~~N~~~~~eLE~n~ 208 (238)
T COG5398 148 EGGTAFYEFEDLG-----DEKAFKD-------EYRQNLDS-L-ELDEATKLRIVDEANDAFDFNMQMFQELEGNL 208 (238)
T ss_pred cccceeeeHhhcc-----hhhhHHH-------HHHHHhhc-c-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455776653 6677654 57777764 2 37899999999999999999999999999865
No 92
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=29.24 E-value=92 Score=27.32 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCcccccchhhhhhcCchH
Q psy1414 165 ILKLAGNYVKNIRHVEVAQQDIKVAMYADKV 195 (551)
Q Consensus 165 ILELAgn~a~~~k~~rItp~hi~~Ai~~D~e 195 (551)
++--|.+.|. .++.+|+++|+.-++++|+.
T Consensus 40 l~~~a~~~A~-~r~~k~~~eD~~FliR~D~~ 69 (92)
T cd07978 40 LCHKAAEVAQ-RRRGKVKVEDLIFLLRKDPK 69 (92)
T ss_pred HHHHHHHHHH-cCCCCCCHHHHHHHHhcCHH
Confidence 4444455554 57778999999999999986
No 93
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=27.52 E-value=1.5e+02 Score=31.70 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=54.4
Q ss_pred ccCCCccccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCCh---hHHHHhhhcHHHHHHHHHHHHHHHHHhhc
Q psy1414 294 HETTSSELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKC---KELDQMFANLMDIYEFSCNLVGILEDNLE 370 (551)
Q Consensus 294 ~p~~~~~~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~---~~v~~iFgNI~dIyef~~~~L~~LEd~~e 370 (551)
|| ..+...|.+.+..+..+=..+.+-++.-...|-.++.--..+-.. ..+.-.|....+.|.--.+||++|....
T Consensus 198 ~~-y~pd~~~~e~~~~Lr~~L~tflq~~~~F~~~Y~~EIrpWch~~~~P~L~gLGPAa~Rlle~y~~l~klL~nL~~lr- 275 (325)
T PF06694_consen 198 HP-YNPDEEYVEKESQLRLELETFLQTAAGFNHCYEKEIRPWCHMMEVPQLHGLGPAANRLLELYKMLLKLLGNLATLR- 275 (325)
T ss_pred CC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCccchhhcccHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45 244567777766655444555554444444444443332222233 3466678999999999999999998764
Q ss_pred cccCCCcccchhhHH
Q psy1414 371 MCNEASNVVIGSCLE 385 (551)
Q Consensus 371 ~~~~~~~~~IG~CF~ 385 (551)
+ ++..|+.|+.
T Consensus 276 --~--Sh~ai~~gs~ 286 (325)
T PF06694_consen 276 --D--SHAAIAAGSS 286 (325)
T ss_pred --H--HHHHHhcCCC
Confidence 2 6788999995
No 94
>KOG1744|consensus
Probab=27.19 E-value=1.2e+02 Score=28.42 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=44.1
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
....++|-|+-+-..-+ --|+..+.--+-+.+--+-..|...||..|+-.++..|+.++|+.|++
T Consensus 37 e~~s~yv~kvlk~Vhpd---~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~r 101 (127)
T KOG1744|consen 37 ESYSEYVYKVLKQVHPD---LGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVR 101 (127)
T ss_pred CceeeehhhhhhcccCC---CCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHH
Confidence 45556776643333222 125555555555555555667777899999999999999999999874
No 95
>PTZ00018 histone H3; Provisional
Probab=26.80 E-value=1.3e+02 Score=28.47 Aligned_cols=74 Identities=12% Similarity=0.171 Sum_probs=54.4
Q ss_pred HHhcccccCcccccHhHHHHhhhcC----ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhh
Q psy1414 116 IEKSKKKISCLVLPVEKIHYLLSKD----VLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAM 190 (551)
Q Consensus 116 l~k~~~k~a~L~FPV~ri~r~Lk~~----~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai 190 (551)
+.+.-+. ..|.+|-.-+.|+.++= ....|..++|-.-|--+-|.....++|-+.--|...++..|.|+|+++|.
T Consensus 52 Ir~yQks-t~lLI~k~pF~RLVREI~~~~~~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ 129 (136)
T PTZ00018 52 IRRYQKS-TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
T ss_pred HHHHccc-chhccccccHHHHHHHHHHHcCCcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHH
Confidence 3344333 56666655555665531 12469999998888888999999999999777777888899999999884
No 96
>PLN00161 histone H3; Provisional
Probab=25.61 E-value=2e+02 Score=27.26 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=51.9
Q ss_pred HHHhcccccCcccccHhHHHHhhhc---Cc--cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhh
Q psy1414 115 AIEKSKKKISCLVLPVEKIHYLLSK---DV--LQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVA 189 (551)
Q Consensus 115 al~k~~~k~a~L~FPV~ri~r~Lk~---~~--~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~A 189 (551)
.|.+.-+. .+|.+|-.-+.|+.++ .. ...|+.++|-.-|--+-|.....++|-|.--|..-++..|.|.|+++|
T Consensus 44 EIR~yQks-t~lLIpklPF~RLVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La 122 (135)
T PLN00161 44 EIRKYQKS-TELLIRKLPFARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLA 122 (135)
T ss_pred HHHHHccc-cccccccccHHHHHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHH
Confidence 33444333 5566655555555543 11 136888888888888888888888998877777778889999999987
Q ss_pred h
Q psy1414 190 M 190 (551)
Q Consensus 190 i 190 (551)
.
T Consensus 123 ~ 123 (135)
T PLN00161 123 R 123 (135)
T ss_pred H
Confidence 4
No 97
>KOG1954|consensus
Probab=25.49 E-value=1.9e+02 Score=32.20 Aligned_cols=20 Identities=40% Similarity=0.599 Sum_probs=14.7
Q ss_pred hhhhhHHhcccccchhhHHH
Q psy1414 462 GFKEAVKYYLPKLFLHPLWH 481 (551)
Q Consensus 462 ~f~~av~y~Lp~lLL~PV~h 481 (551)
.=++.|+--||.-.|.-||+
T Consensus 465 ak~~mv~sklpnsvlgkiwk 484 (532)
T KOG1954|consen 465 AKKEMVKSKLPNSVLGKIWK 484 (532)
T ss_pred hHHHHHhccCchhHHHhhhh
Confidence 34688888888777776665
No 98
>PLN00121 histone H3; Provisional
Probab=24.76 E-value=1.3e+02 Score=28.45 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=53.9
Q ss_pred HHhcccccCcccccHhHHHHhhhc---C-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhh
Q psy1414 116 IEKSKKKISCLVLPVEKIHYLLSK---D-VLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAM 190 (551)
Q Consensus 116 l~k~~~k~a~L~FPV~ri~r~Lk~---~-~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai 190 (551)
+.+.-+. ..|.+|-.-+.|+.++ + ....|..++|-.-|--+-|.....++|-+.--|...++..|.|+|+++|.
T Consensus 52 Ir~yQks-t~lLI~k~pF~RLVREI~~~~~~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ 129 (136)
T PLN00121 52 IRKYQKS-TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
T ss_pred HHHhccc-cccccccccHHHHHHHHHHHhCccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHH
Confidence 3344333 5666665555565553 1 11458999998888888899999999988777777788899999999884
No 99
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=24.03 E-value=2.1e+02 Score=27.44 Aligned_cols=43 Identities=9% Similarity=0.007 Sum_probs=33.5
Q ss_pred HHhHHHHHHHHHHHhcCCC-CChhHHHHhhhcHHHHHHHHHHHHHHH
Q psy1414 320 DLHMINKVFLEEIVKLIPP-GKCKELDQMFANLMDIYEFSCNLVGIL 365 (551)
Q Consensus 320 dL~~Ii~~f~~~~~~~~~~-~~~~~v~~iFgNI~dIyef~~~~L~~L 365 (551)
|.+.+++.|.++|.+.... -+++|+-.=+|+..+|-+ +++.+.
T Consensus 21 e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~---~i~~~~ 64 (181)
T PF08006_consen 21 EREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAR---EILAEY 64 (181)
T ss_pred HHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHH---HHHHhh
Confidence 5678999999999987653 478999999999877644 776654
No 100
>PF12096 DUF3572: Protein of unknown function (DUF3572); InterPro: IPR021955 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 100 amino acids in length.
Probab=23.78 E-value=58 Score=28.56 Aligned_cols=54 Identities=17% Similarity=0.349 Sum_probs=36.1
Q ss_pred HhHHHHhhhcCccc---cccccchhHHHHHHHHHHHHH---HHHHHHHHHHhcCCcccccchhhhhh
Q psy1414 130 VEKIHYLLSKDVLQ---YKVEMNVSIYITAVLEYISAD---ILKLAGNYVKNIRHVEVAQQDIKVAM 190 (551)
Q Consensus 130 V~ri~r~Lk~~~~~---~Rv~~~a~VyLaAVLEYLtae---ILELAgn~a~~~k~~rItp~hi~~Ai 190 (551)
-+++.|+|-..... -|-..+-|-|+++||+||+.+ ++..+.+ ..|.|+.+..|-
T Consensus 21 ~e~l~rFLa~TG~~p~~LR~~a~dp~FL~~VLdFl~~de~~l~af~~a-------~~~~p~~v~~Ar 80 (88)
T PF12096_consen 21 PERLPRFLALTGLSPDDLRAAAGDPAFLAAVLDFLLMDEAWLLAFCDA-------AGIPPEAVAAAR 80 (88)
T ss_pred HHHHHHHHHHhCCCHHHHHHHccChHHHHHHHHHHHcchHHHHHHHHH-------cCcChhHHHHHH
Confidence 35667777554443 388889999999999999876 4433321 236677766553
No 101
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=22.99 E-value=4.5e+02 Score=27.08 Aligned_cols=66 Identities=21% Similarity=0.389 Sum_probs=46.9
Q ss_pred HHHHHHhhHHHHHHHHhHH---HHHHHHHHHhcCC-----CCChhHHHHhhhcHHHHH------------HHHHHHHHHH
Q psy1414 306 IVHDLVTDEKQHLRDLHMI---NKVFLEEIVKLIP-----PGKCKELDQMFANLMDIY------------EFSCNLVGIL 365 (551)
Q Consensus 306 vv~eli~tEr~YirdL~~I---i~~f~~~~~~~~~-----~~~~~~v~~iFgNI~dIy------------ef~~~~L~~L 365 (551)
..++++.--+.|.+-|+.. .++|.+.+.+... .. ..++......|.|.| .|+..++.-|
T Consensus 23 ~lrnlv~~G~~Y~kal~a~~~a~~~y~dAl~Kige~A~~s~g-SkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pL 101 (232)
T cd07646 23 SLRNFIAMGKNYEKALASVTFAAKGYFDALVKMGELASESQG-SKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQL 101 (232)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778887776655 6689999888532 23 355655555577777 5788889999
Q ss_pred HHhhccc
Q psy1414 366 EDNLEMC 372 (551)
Q Consensus 366 Ed~~e~~ 372 (551)
|+.+|+.
T Consensus 102 E~k~E~D 108 (232)
T cd07646 102 EQKVELD 108 (232)
T ss_pred HHHHHHH
Confidence 9988865
No 102
>KOG1142|consensus
Probab=22.93 E-value=1.1e+02 Score=31.77 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=58.4
Q ss_pred ccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCc
Q psy1414 126 LVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYAD 193 (551)
Q Consensus 126 L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D 193 (551)
...-..+++.++++=.-...++..+--.|.-+.|=+..+|...|..-||..|...|-.+||++.+.++
T Consensus 153 ~il~k~kl~dLvqqId~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~ 220 (258)
T KOG1142|consen 153 PILSKRKLDDLVQQIDGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERN 220 (258)
T ss_pred ccccccchhHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeecc
Confidence 34456788889976544568999999999999999999999999999999888899999999988776
No 103
>PHA02961 hypothetical protein; Provisional
Probab=22.08 E-value=1.3e+02 Score=35.09 Aligned_cols=147 Identities=13% Similarity=0.159 Sum_probs=82.3
Q ss_pred HHHHHHHHhcccccCcccc---cHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchh
Q psy1414 110 HEAKEAIEKSKKKISCLVL---PVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDI 186 (551)
Q Consensus 110 ~~a~~al~k~~~k~a~L~F---PV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi 186 (551)
+.||+|+.|-=++ +|.| |.....++|+.|.+ ..+... .| .++.+.--+...-.+-+.|.++|+
T Consensus 7 k~aRkai~klis~--~Ldf~kLs~~~a~~LL~~G~H-~~LPkk--~Y---------~~av~~dp~nLylF~P~~V~l~DL 72 (658)
T PHA02961 7 KDLRKSINEFIKS--GLDFDLLHEKHAHRLIINNIF-SKLPDK--YY---------DFAKGLDINNILAFDHEIIELNDL 72 (658)
T ss_pred HHHHHHHHHHHHc--CCChHhcCHHHHHHHHHcCCc-ccCcHH--HH---------HHHHHhChhheeccCcccccHHHH
Confidence 5678888885333 3555 99999999988777 444432 23 233344445555677888999999
Q ss_pred hhhhcCchHHHhhhcCC----CccccCCccc--cccccCCCcchhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCC
Q psy1414 187 KVAMYADKVLMDMFYQD----EHTSDSGSIV--HSVSETTSSELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIP 260 (551)
Q Consensus 187 ~~Ai~~D~eL~~Lf~~~----~~ti~~ggv~--~~~~~~~~~~~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~ 260 (551)
..++..-+.+.+.|.++ .-++-+-|.+ .+. ...-+|-+| ||-++... ++-... |.|+ -+......+
T Consensus 73 i~lI~r~~nI~e~l~~hI~fHKk~LL~dg~vi~KcI---~~m~ItdDD-IR~Iidrf--i~~~vd-LlkI-N~~si~~n~ 144 (658)
T PHA02961 73 KKLIMKLPHIPDCFTDIIACHKKYLLLDAAIVFKLI---ESNIINLSD-IRNIIDNR--IKTPIE-IALI-NSDLIIPGT 144 (658)
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHhhhhHHHHHH---HhcCccHHH-HHHHHHhc--cCcchh-HhhC-CHHHhhccc
Confidence 99999977775555421 0011112211 111 012233343 34333322 111111 1111 134445677
Q ss_pred CCChhhhHHHhhhH-HHHH
Q psy1414 261 PGKCKELDQMFANL-MDIY 278 (551)
Q Consensus 261 ~~~~~~~~~~f~ni-~~i~ 278 (551)
.||+++++.||-++ ...|
T Consensus 145 ~FS~eeie~I~~~~p~~~~ 163 (658)
T PHA02961 145 HFSLDDIKTIFDNKGADNT 163 (658)
T ss_pred cCCHHHHHHHHHcCchhhH
Confidence 99999999999998 5443
No 104
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein. Members of this family are the extracellular solute-binding proteins of ABC transporters that closely resemble amino acid transporters. The member from Sinorhizobium meliloti is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes.
Probab=21.52 E-value=48 Score=33.35 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=27.4
Q ss_pred CCCCcccchhhHHHHHHHhhcchhhhhhhh
Q psy1414 15 LIGSPWRDRISLAILELQEKGTIQMLYDKW 44 (551)
Q Consensus 15 P~GSpyR~~is~AILkLqE~G~L~eLK~KW 44 (551)
|.+..+++.+|.+|-++.++|.+.++-.||
T Consensus 230 ~~~~~l~~~~n~~l~~~~~sG~~~~i~~ky 259 (275)
T TIGR02995 230 PEDKELRDAFNVELAKLKESGEFAKIIAPY 259 (275)
T ss_pred CCCHHHHHHHHHHHHHHHhChHHHHHHHHh
Confidence 446678999999999999999999999999
Done!