Query psy1414
Match_columns 551
No_of_seqs 320 out of 682
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 20:32:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ksy_A SOS-1, SON of sevenless 100.0 2.4E-71 8.2E-76 648.0 23.3 396 36-545 11-413 (1049)
2 1dbh_A Protein (human SOS 1); 100.0 5.5E-35 1.9E-39 301.9 12.8 209 300-541 1-212 (354)
3 2jss_A Chimera of histone H2B. 100.0 2.6E-32 9E-37 263.4 14.1 162 50-215 11-191 (192)
4 2f8n_G Core histone macro-H2A. 100.0 2.4E-29 8.3E-34 225.8 6.8 91 124-216 19-109 (120)
5 2nqb_C Histone H2A; nucleosome 100.0 5.3E-29 1.8E-33 224.5 7.3 91 124-216 20-110 (123)
6 1id3_C Histone H2A.1; nucleoso 100.0 9.3E-29 3.2E-33 225.1 8.8 91 124-216 22-112 (131)
7 1f66_C Histone H2A.Z; nucleoso 100.0 6.9E-29 2.4E-33 225.1 7.0 90 124-216 24-114 (128)
8 1tzy_A Histone H2A-IV; histone 99.9 9E-29 3.1E-33 224.6 7.3 91 124-216 22-112 (129)
9 2dfk_A Collybistin II; DH doma 99.9 6.4E-28 2.2E-32 254.5 13.4 186 299-521 38-224 (402)
10 1by1_A Protein (PIX); RHO-GTPa 99.9 7.6E-28 2.6E-32 232.3 12.3 179 303-523 14-194 (209)
11 2f8n_K Histone H2A type 1; nuc 99.9 1.8E-28 6.3E-33 226.8 7.0 91 124-216 41-131 (149)
12 2z0q_A XPLN, RHO guanine nucle 99.9 4.8E-27 1.6E-31 241.8 17.5 183 302-523 19-202 (346)
13 2pz1_A RHO guanine nucleotide 99.9 2E-27 6.8E-32 254.4 12.9 186 299-521 115-301 (466)
14 1foe_A T-lymphoma invasion and 99.9 8.9E-27 3.1E-31 242.7 14.2 182 303-522 12-205 (377)
15 2vrw_B P95VAV, VAV1, proto-onc 99.9 1.4E-26 4.7E-31 243.8 11.1 179 301-521 24-203 (406)
16 1txd_A RHO guanine nucleotide 99.9 3E-26 1E-30 239.4 13.0 184 302-521 24-213 (385)
17 3jv3_A Intersectin-1; SH3 doma 99.9 6.5E-26 2.2E-30 226.4 14.0 186 302-523 82-269 (283)
18 1xcg_A PDZ-rhogef, RHO guanine 99.9 6.4E-26 2.2E-30 235.0 14.1 184 301-521 20-209 (368)
19 3p6a_A RHO guanine nucleotide 99.9 4.9E-26 1.7E-30 236.4 12.7 187 301-523 26-217 (377)
20 1kz7_A Guanine nucleotide exch 99.9 7.6E-26 2.6E-30 234.7 11.2 176 302-523 11-192 (353)
21 3odw_A RHO guanine nucleotide 99.9 6.1E-25 2.1E-29 240.5 13.2 187 301-523 179-370 (536)
22 2rgn_B RHOA/RAC/CDC42 exchange 99.9 6.3E-25 2.2E-29 227.8 11.7 173 304-523 14-189 (354)
23 3t06_A PDZ-rhogef, RHO guanine 99.9 1.4E-24 4.8E-29 228.8 14.5 186 300-522 61-252 (418)
24 1nty_A Triple functional domai 99.9 2.8E-24 9.6E-29 218.6 15.9 172 303-523 10-185 (311)
25 3mpx_A FYVE, rhogef and PH dom 99.9 1E-24 3.5E-29 230.7 11.9 186 300-523 20-215 (434)
26 3ky9_A Proto-oncogene VAV; cal 99.9 3.5E-24 1.2E-28 236.3 12.7 178 302-521 197-375 (587)
27 3jzy_A Intersectin 2; C2 domai 99.9 2E-24 6.7E-29 231.9 0.0 185 302-523 27-214 (510)
28 1jfi_A Transcription regulator 99.7 4.7E-17 1.6E-21 141.3 6.5 78 124-201 8-85 (98)
29 1n1j_B NF-YC; histone-like PAI 99.4 3.4E-13 1.2E-17 116.7 7.0 78 124-201 16-93 (97)
30 4g92_C HAPE; transcription fac 99.4 6.4E-13 2.2E-17 119.1 8.4 76 125-200 39-114 (119)
31 2byk_A Chrac-16; nucleosome sl 99.0 2.8E-10 9.5E-15 104.7 4.6 78 124-201 16-94 (140)
32 1tzy_D Histone H4-VI; histone- 98.7 2.3E-08 7.9E-13 87.3 5.8 65 128-193 30-94 (103)
33 2yfw_B Histone H4, H4; cell cy 98.6 2.4E-08 8.2E-13 87.2 5.8 66 128-194 30-95 (103)
34 1f1e_A Histone fold protein; a 98.6 1.7E-07 5.9E-12 87.3 11.2 69 124-193 79-147 (154)
35 1dbh_A Protein (human SOS 1); 98.6 2.5E-08 8.7E-13 102.6 4.8 71 223-293 1-72 (354)
36 3ksy_A SOS-1, SON of sevenless 98.2 8.6E-07 2.9E-11 104.2 4.6 73 222-294 197-270 (1049)
37 1ku5_A HPHA, archaeal histon; 98.1 4.3E-06 1.5E-10 67.8 5.9 65 127-192 6-70 (70)
38 3kg2_A Glutamate receptor 2; I 98.0 2.8E-06 9.4E-11 95.4 5.4 71 12-82 725-808 (823)
39 1by1_A Protein (PIX); RHO-GTPa 98.0 7.1E-06 2.4E-10 78.6 6.9 69 223-292 10-80 (209)
40 1b67_A Protein (histone HMFA); 98.0 9.1E-06 3.1E-10 65.3 5.9 65 127-192 2-66 (68)
41 2dfk_A Collybistin II; DH doma 98.0 8.4E-06 2.9E-10 85.7 7.2 69 223-291 39-108 (402)
42 2pz1_A RHO guanine nucleotide 97.9 1.1E-05 3.7E-10 86.2 6.2 70 222-291 115-185 (466)
43 1txd_A RHO guanine nucleotide 97.9 2.3E-05 7.8E-10 81.5 8.1 66 224-291 23-89 (385)
44 2z0q_A XPLN, RHO guanine nucle 97.8 1.9E-05 6.4E-10 80.9 5.6 68 223-291 17-85 (346)
45 1nty_A Triple functional domai 97.8 2.3E-05 7.9E-10 79.2 6.2 68 225-292 9-81 (311)
46 2vrw_B P95VAV, VAV1, proto-onc 97.8 2.4E-05 8.1E-10 82.0 6.3 66 224-292 24-90 (406)
47 1xcg_A PDZ-rhogef, RHO guanine 97.7 1.9E-05 6.5E-10 81.4 5.1 69 223-292 19-88 (368)
48 1foe_A T-lymphoma invasion and 97.7 2.4E-05 8.2E-10 81.1 5.7 69 226-295 12-81 (377)
49 3p6a_A RHO guanine nucleotide 97.7 2.8E-05 9.7E-10 80.2 5.8 65 222-287 24-88 (377)
50 3t06_A PDZ-rhogef, RHO guanine 97.7 2.7E-05 9.2E-10 81.7 5.1 70 222-292 60-130 (418)
51 3jv3_A Intersectin-1; SH3 doma 97.7 3.3E-05 1.1E-09 76.5 5.4 62 225-287 82-143 (283)
52 3odw_A RHO guanine nucleotide 97.6 6E-05 2.1E-09 82.5 5.8 64 223-287 178-241 (536)
53 1kz7_A Guanine nucleotide exch 97.5 3.7E-05 1.3E-09 79.4 3.7 69 224-292 10-85 (353)
54 3mpx_A FYVE, rhogef and PH dom 97.5 4.6E-05 1.6E-09 80.3 4.4 70 223-292 20-98 (434)
55 3ky9_A Proto-oncogene VAV; cal 97.4 0.00016 5.4E-09 79.7 6.4 65 225-292 197-262 (587)
56 2rgn_B RHOA/RAC/CDC42 exchange 97.3 0.00021 7.1E-09 73.7 5.7 64 227-290 14-80 (354)
57 3jzy_A Intersectin 2; C2 domai 97.2 5.3E-05 1.8E-09 81.0 0.0 68 224-292 26-94 (510)
58 1n1j_A NF-YB; histone-like PAI 97.0 0.00089 3E-08 56.9 6.1 68 124-191 5-73 (93)
59 3b0c_W CENP-W, centromere prot 96.8 0.002 7E-08 52.8 6.0 66 126-191 3-68 (76)
60 1f1e_A Histone fold protein; a 96.7 0.0022 7.5E-08 59.7 5.9 64 127-190 4-67 (154)
61 2hue_C Histone H4; mini beta s 96.6 0.0036 1.2E-07 52.4 6.4 66 127-193 10-75 (84)
62 1id3_B Histone H4; nucleosome 96.3 0.0067 2.3E-07 52.7 6.3 66 127-193 28-93 (102)
63 2byk_B Chrac-14; nucleosome sl 96.2 0.0049 1.7E-07 55.7 5.1 69 125-193 7-76 (128)
64 1taf_B TFIID TBP associated fa 96.1 0.0087 3E-07 48.7 5.8 65 126-191 5-69 (70)
65 3b0c_T CENP-T, centromere prot 94.9 0.013 4.6E-07 51.5 3.0 71 125-196 5-75 (111)
66 1taf_A TFIID TBP associated fa 94.7 0.043 1.5E-06 44.3 5.4 61 131-192 5-65 (68)
67 3v9r_A MHF1, uncharacterized p 94.5 0.056 1.9E-06 46.0 5.6 77 124-202 12-89 (90)
68 1yae_A Glutamate receptor, ion 93.8 0.02 7E-07 56.4 2.0 35 13-47 254-288 (312)
69 4dra_A Centromere protein S; D 93.7 0.035 1.2E-06 49.1 3.1 78 124-202 27-104 (113)
70 1jfi_B DR1 protein, transcript 93.3 0.1 3.5E-06 49.6 5.8 68 124-191 12-79 (179)
71 1tzy_B Histone H2B; histone-fo 92.9 0.13 4.4E-06 46.3 5.3 67 124-191 34-100 (126)
72 3b0b_B CENP-S, centromere prot 92.9 0.079 2.7E-06 46.4 3.9 77 124-201 19-95 (107)
73 2nqb_D Histone H2B; nucleosome 91.9 0.16 5.4E-06 45.5 4.7 66 125-191 32-97 (123)
74 3nqj_A Histone H3-like centrom 90.1 0.43 1.5E-05 39.8 5.4 50 142-191 24-73 (82)
75 3r45_A Histone H3-like centrom 89.3 0.39 1.3E-05 44.6 5.0 76 115-191 66-147 (156)
76 3vh5_A CENP-S; histone fold, c 89.3 0.28 9.5E-06 44.8 3.9 77 124-201 19-95 (140)
77 2yfv_A Histone H3-like centrom 89.0 0.42 1.4E-05 41.3 4.7 75 116-191 17-98 (100)
78 2hue_B Histone H3; mini beta s 88.7 0.63 2.2E-05 38.4 5.3 65 127-191 3-71 (77)
79 2jss_A Chimera of histone H2B. 88.4 0.48 1.6E-05 45.3 5.1 61 131-191 7-67 (192)
80 3nqu_A Histone H3-like centrom 88.3 0.49 1.7E-05 43.3 4.8 76 115-191 50-131 (140)
81 1tzy_C Histone H3; histone-fol 87.0 1.1 3.7E-05 40.8 6.3 76 115-191 51-130 (136)
82 2ly8_A Budding yeast chaperone 83.9 1.4 4.6E-05 39.4 5.3 49 143-191 62-110 (121)
83 3i6v_A Periplasmic His/Glu/Gln 83.2 0.48 1.6E-05 44.0 2.2 38 12-49 182-220 (232)
84 1bh9_B TAFII28; histone fold, 81.2 1.9 6.6E-05 36.3 5.0 64 127-191 16-80 (89)
85 3k4u_A Binding component of AB 76.8 1.1 3.7E-05 41.5 2.3 39 12-50 193-232 (245)
86 2nqb_D Histone H2B; nucleosome 76.5 2.4 8.2E-05 37.9 4.3 71 50-120 41-120 (123)
87 1tzy_B Histone H2B; histone-fo 76.2 2.4 8.2E-05 38.0 4.2 71 50-120 44-123 (126)
88 2l5a_A Histone H3-like centrom 75.8 2.9 0.0001 41.2 5.1 57 135-192 169-225 (235)
89 4dra_E Centromere protein X; D 63.8 14 0.00049 30.8 6.1 64 124-188 9-75 (84)
90 1k6k_A ATP-dependent CLP prote 61.8 5.5 0.00019 34.7 3.5 41 162-202 6-46 (143)
91 3b0b_C CENP-X, centromere prot 57.2 17 0.00057 30.1 5.3 63 125-188 6-71 (81)
92 3hv1_A Polar amino acid ABC up 55.6 6.4 0.00022 36.8 2.9 35 13-47 214-249 (268)
93 1khy_A CLPB protein; alpha hel 52.0 8.4 0.00029 33.6 2.9 39 163-201 11-51 (148)
94 3fes_A ATP-dependent CLP endop 49.9 6 0.0002 35.0 1.6 40 162-201 12-53 (145)
95 3fh2_A Probable ATP-dependent 47.6 7.2 0.00025 34.5 1.8 41 162-202 11-53 (146)
96 3qax_A Probable ABC transporte 47.0 6.8 0.00023 36.1 1.6 38 11-48 217-255 (268)
97 2y1q_A CLPC N-domain, negative 45.3 8.6 0.00029 33.7 1.9 40 163-202 11-52 (150)
98 2vha_A Periplasmic binding tra 45.0 7.6 0.00026 36.8 1.6 35 13-47 214-249 (287)
99 2iee_A ORF2, probable ABC tran 43.7 6.8 0.00023 37.0 1.0 34 13-46 212-246 (271)
100 1h3o_B Transcription initiatio 43.0 44 0.0015 27.3 5.6 66 126-191 4-69 (76)
101 3zri_A CLPB protein, CLPV; cha 41.0 14 0.00048 34.1 2.7 40 163-202 30-71 (171)
102 3fes_A ATP-dependent CLP endop 36.1 16 0.00053 32.3 2.1 41 162-202 86-128 (145)
103 3fh2_A Probable ATP-dependent 36.0 19 0.00064 31.7 2.6 40 163-202 87-128 (146)
104 1xt8_A Putative amino-acid tra 35.9 11 0.00037 35.9 1.1 35 13-47 231-266 (292)
105 2yjp_A Putative ABC transporte 30.7 15 0.0005 35.2 1.0 35 13-47 242-277 (291)
106 2q88_A EHUB, putative ABC tran 30.6 13 0.00045 34.2 0.7 33 13-45 206-239 (257)
107 1k6k_A ATP-dependent CLP prote 28.6 33 0.0011 29.6 2.9 40 162-201 84-125 (143)
108 1top_A Troponin C; contractIle 25.5 2.9E+02 0.0098 22.9 8.6 44 177-233 33-82 (162)
109 3ok8_A Brain-specific angiogen 25.1 2E+02 0.0067 28.0 7.9 80 267-372 14-113 (222)
110 1khy_A CLPB protein; alpha hel 24.7 55 0.0019 28.3 3.6 41 162-202 87-128 (148)
111 2ovk_C Myosin catalytic light 24.6 3E+02 0.01 22.9 9.0 28 175-202 22-55 (159)
112 1wwi_A Hypothetical protein TT 24.5 1.2E+02 0.0042 27.7 5.9 74 127-202 2-75 (148)
113 3zri_A CLPB protein, CLPV; cha 23.8 40 0.0014 31.0 2.6 32 163-194 104-136 (171)
114 2f6m_B Vacuolar protein sortin 23.5 1.2E+02 0.004 26.5 5.3 21 264-284 21-41 (109)
115 3f1i_H Hepatocyte growth facto 23.5 1.8E+02 0.006 24.9 6.2 52 316-367 4-59 (98)
116 2y1q_A CLPC N-domain, negative 23.2 36 0.0012 29.6 2.1 40 162-201 84-125 (150)
117 1r6b_X CLPA protein; AAA+, N-t 21.1 55 0.0019 36.4 3.6 40 162-201 6-45 (758)
No 1
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00 E-value=2.4e-71 Score=647.96 Aligned_cols=396 Identities=45% Similarity=0.729 Sum_probs=343.2
Q ss_pred chhhhhhhhhc----ccCccccccCCCcccchhhhhhHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhCCCCchhhhhHH
Q psy1414 36 TIQMLYDKWWK----NTGDVLQQVHPTLTAREDACLYVESLVLKILAMLCSKPSPHTTSDVEERVRRQFPTPIDKWAMHE 111 (551)
Q Consensus 36 ~L~eLK~KWWk----s~Gkc~c~~~psl~aselglGlVlsliVaLLEfL~~~~~pktv~dvEerv~~tFp~pidkWal~~ 111 (551)
.-+++..||.. +.+++++++||+++++++|+.++.++++.++.+||. |.|||++|||++|+++||+|+|+||+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1049)
T 3ksy_A 11 FSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ-AQPRSASDVEERVQKSFPHPIDKWAIAD 89 (1049)
T ss_dssp SCSSCCTTSSSSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH-TCCCSHHHHHHHHHHHSCTTHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHhCCCchHHHHHHH
Confidence 34578889873 346788999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHhcccccCcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 112 AKEAIEKSKKKISCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 112 a~~al~k~~~k~a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
|++++.++++| |||+||||||||+| +|+|++|||++||||||||||||+|||||||||+|+++++++|||+|+++|++
T Consensus 90 ~~~~~~~~~~~-~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 90 AQSAIEKRKRR-NPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp HHHHHTTCCCS-SSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred HHHhhhccccc-CCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 99999999999 99999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHhhhcCCCccccCCccccccccCCCcchhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHh
Q psy1414 192 ADKVLMDMFYQDEHTSDSGSIVHSVSETTSSELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMF 271 (551)
Q Consensus 192 ~D~eL~~Lf~~~~~ti~~ggv~~~~~~~~~~~~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f 271 (551)
||++|++||+++ ...+|+++... ++
T Consensus 168 ~d~eL~~l~~~d---ee~~~~lp~~~---------~~------------------------------------------- 192 (1049)
T 3ksy_A 168 ADKVLMDMFHQD---VEDINILSLTD---------EE------------------------------------------- 192 (1049)
T ss_dssp HCSSHHHHCC----------------------------------------------------------------------
T ss_pred CCHHHHHHHhhc---cccccCCCCcc---------cc-------------------------------------------
Confidence 999999999874 23445543210 11
Q ss_pred hhHHHHHHhhhccCCCCCCcccccCCCccccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcH
Q psy1414 272 ANLMDIYEFSLNFKTPPDPLFIHETTSSELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANL 351 (551)
Q Consensus 272 ~ni~~i~~~~~~~~~~~d~~e~~p~~~~~~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI 351 (551)
|..+.+++|.++|+|++.||+.|++||+.|+++|+.++.+...+++++++..|||||
T Consensus 193 -----------------------~~~~~~~~~revI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~~l~~~~~~~IF~Ni 249 (1049)
T 3ksy_A 193 -----------------------PSTSGEQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRI 249 (1049)
T ss_dssp -------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHCTTTSCHHHHHHHHSSH
T ss_pred -----------------------CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHhcCH
Confidence 556678899999999999999999999999999999999876678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCC-CcccchhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccc
Q psy1414 352 MDIYEFSCNLVGILEDNLEMCNEA-SNVVIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCC 430 (551)
Q Consensus 352 ~dIyef~~~~L~~LEd~~e~~~~~-~~~~IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~ 430 (551)
++||+|+..||.+||+++++.++. +.+.||.||+++++...|++|+.||+|++++.+.+.
T Consensus 250 ~~I~~~h~~fL~~Le~~~~~~~~~~~~~~IgdiFl~~~~~~~F~~Y~~Yc~ny~~~~a~~~------------------- 310 (1049)
T 3ksy_A 250 VDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDR------------------- 310 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHTTTTSHHHHHHHHHHCTTHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHHHhhhhHHHHHHHhhccHHHHHH-------------------
Confidence 999999999999999999876542 458999999999988899999999999755555554
Q ss_pred cccccccccchHHHHhhcCCccccccccccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCCCchhHHHHHHHH
Q psy1414 431 AKDITYYKCPEKLLEELKNPEVSIPLQSGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEG 510 (551)
Q Consensus 431 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~~~D~~~l~~a~~ 510 (551)
+.+++.+|.+..|++..+++++.+.++.|++||++|||||.+|+++|++|+|+|++++|+++|++|+.
T Consensus 311 ------------l~~l~~~~~f~~fl~~~~~~~~~~~~l~L~s~LikPvQRI~rY~LLL~~LlK~Tp~~~D~~~L~~Al~ 378 (1049)
T 3ksy_A 311 ------------FLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAIT 378 (1049)
T ss_dssp ------------HHTTSSSTTHHHHHHHHCTTHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ------------HHHHhcChHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHhHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 45556677788888877888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc-CCCCCCCcCchhh-hhhhhhh
Q psy1414 511 LLKALQVDLSDSLQN-YPRNGRDTGIRAL-IDATLRR 545 (551)
Q Consensus 511 ~l~~v~~~i~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 545 (551)
.|+.++..|...|+. ++| ++.++..+ ++..+++
T Consensus 379 ~i~~v~~~VNe~~~~~~~k--~r~~e~~~~~~~n~~k 413 (1049)
T 3ksy_A 379 ALLNVQSGMEKICSKSLAK--RRLSESACRFYSQQMK 413 (1049)
T ss_dssp HTHHHHHHHHHHTTSTTHH--HHHHHHC---------
T ss_pred HHHHHHHHHHHHhhhhhhh--hccchhhhhhhHHHHH
Confidence 999999999999965 888 77777666 6555544
No 2
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=100.00 E-value=5.5e-35 Score=301.92 Aligned_cols=209 Identities=35% Similarity=0.612 Sum_probs=182.5
Q ss_pred cccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCC-Ccc
Q psy1414 300 ELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEA-SNV 378 (551)
Q Consensus 300 ~~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~-~~~ 378 (551)
+++|.++++|++.||+.|++||+.|+++|+.++.+..+.++++++..|||||++||+++..||.+||+++++.++. +.+
T Consensus 1 ~~~y~~vi~Eli~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~~~ 80 (354)
T 1dbh_A 1 EQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHP 80 (354)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCTTSSSC
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhccccCCccc
Confidence 4699999999999999999999999999999999866678999999999999999999999999999998876443 338
Q ss_pred cchhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCcccccccc
Q psy1414 379 VIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQS 458 (551)
Q Consensus 379 ~IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 458 (551)
.||.||+++++...|++|+.||+|++++.+.+. +.+++++|.+..|++.
T Consensus 81 ~ig~~f~~~~~~~~f~~Y~~Y~~n~~~~~a~~~-------------------------------l~~~~~~~~f~~~l~~ 129 (354)
T 1dbh_A 81 LVGSCFEDLAEELAFDPYESYARDILRPGFHDR-------------------------------FLSQLSKPGAALYLQS 129 (354)
T ss_dssp CCHHHHHHHHHTTTTHHHHHHHHHHTSTTHHHH-------------------------------HHHHHHSTTHHHHHHH
T ss_pred hHHHHHHHHhHHhhhhHHHHHHHhccchHHHHH-------------------------------HHHHhcChHHHHHHHH
Confidence 899999999865589999999999977655554 4556678888888887
Q ss_pred ccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCCcCchh
Q psy1414 459 GGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQN-YPRNGRDTGIRA 537 (551)
Q Consensus 459 ~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~~~D~~~l~~a~~~l~~v~~~i~~~~~~-~~~~~~~~~~~~ 537 (551)
.++.++++.++.|++||++|||||.+|+++|++|+|+||+++|+++|++|+.+|+.++..|..+|++ .|+ |++|+.+
T Consensus 130 ~~~~~~~~~~~~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~d~~~L~~Al~~~~~v~~~in~~~~~~~~~--r~~~e~~ 207 (354)
T 1dbh_A 130 IGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGMEKICSKSLAK--RRLSESA 207 (354)
T ss_dssp HCTTHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHH--HHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhchHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHhhccccc--ccccchh
Confidence 7778888999999999999999999999999999999999999999999999999999999999987 677 7777666
Q ss_pred h-hhh
Q psy1414 538 L-IDA 541 (551)
Q Consensus 538 ~-~~~ 541 (551)
+ +|.
T Consensus 208 ~~~~~ 212 (354)
T 1dbh_A 208 CRFYS 212 (354)
T ss_dssp -----
T ss_pred hhhhh
Confidence 6 554
No 3
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.98 E-value=2.6e-32 Score=263.42 Aligned_cols=162 Identities=27% Similarity=0.461 Sum_probs=144.8
Q ss_pred ccccccCCCcccchhhhhhHHHHHHHHHHHHhcC---------CCCCCcchHHHHHHhhCCCCchhhhhHHHHHHHHhcc
Q psy1414 50 DVLQQVHPTLTAREDACLYVESLVLKILAMLCSK---------PSPHTTSDVEERVRRQFPTPIDKWAMHEAKEAIEKSK 120 (551)
Q Consensus 50 kc~c~~~psl~aselglGlVlsliVaLLEfL~~~---------~~pktv~dvEerv~~tFp~pidkWal~~a~~al~k~~ 120 (551)
++..++||....+..++..+.+++.-+++.+... ...-|.++++.+++.+||.++++||+.++.+|+.+.+
T Consensus 11 kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~eG~kAv~k~~ 90 (192)
T 2jss_A 11 KVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYS 90 (192)
T ss_dssp HHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhc
Confidence 4556778877788889999999999999988752 1234667899999999999999999999999998762
Q ss_pred ---------cccCcccccHhHHHHhhhcCccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhh
Q psy1414 121 ---------KKISCLVLPVEKIHYLLSKDVLQ-YKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAM 190 (551)
Q Consensus 121 ---------~k~a~L~FPV~ri~r~Lk~~~~~-~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai 190 (551)
+| +||+|||+||||+||++.++ +||+++|||||+||||||++||||+|||+|+++++++|+|+||++||
T Consensus 91 ~sk~~~s~s~r-agl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi 169 (192)
T 2jss_A 91 SSTQAQSSSAR-AGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAI 169 (192)
T ss_dssp HHCSSSCHHHH-SSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred ccccccccccc-CCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Confidence 24 99999999999999999886 69999999999999999999999999999999999999999999999
Q ss_pred cCchHHHhhhcCCCccccCCccccc
Q psy1414 191 YADKVLMDMFYQDEHTSDSGSIVHS 215 (551)
Q Consensus 191 ~~D~eL~~Lf~~~~~ti~~ggv~~~ 215 (551)
+||+||+.||+ +||++|||+|.
T Consensus 170 ~nD~eL~~L~~---~ti~~ggv~p~ 191 (192)
T 2jss_A 170 RGDDELDSLIR---ATIASGGVLPH 191 (192)
T ss_dssp HTSHHHHHHHC---SCCTTTCCSSC
T ss_pred hccHHHHHHHh---hhhcCCCcCCC
Confidence 99999999997 58999999974
No 4
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.95 E-value=2.4e-29 Score=225.82 Aligned_cols=91 Identities=26% Similarity=0.485 Sum_probs=88.6
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcCC
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQD 203 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~~ 203 (551)
++|+|||+||||+||++.|++||+++|||||+||||||++||||+|||+|+++++++|||+||++||+||+||+.||++
T Consensus 19 agLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll~~- 97 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKG- 97 (120)
T ss_dssp HTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTTT-
T ss_pred cCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHhCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CccccCCcccccc
Q psy1414 204 EHTSDSGSIVHSV 216 (551)
Q Consensus 204 ~~ti~~ggv~~~~ 216 (551)
+||++|||++.-
T Consensus 98 -vtia~ggv~p~i 109 (120)
T 2f8n_G 98 -VTIASGGVLPNI 109 (120)
T ss_dssp -EEETTCCCCCCC
T ss_pred -ceECCCCcCCCc
Confidence 899999999753
No 5
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.95 E-value=5.3e-29 Score=224.49 Aligned_cols=91 Identities=27% Similarity=0.524 Sum_probs=88.6
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcCC
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQD 203 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~~ 203 (551)
++|+|||+||||+||++++++||+++|||||+||||||++||||+|||+|++.++++|+|+||++||+||+||+.||++
T Consensus 20 agL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll~~- 98 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG- 98 (123)
T ss_dssp HTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTTT-
T ss_pred CCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHhcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CccccCCcccccc
Q psy1414 204 EHTSDSGSIVHSV 216 (551)
Q Consensus 204 ~~ti~~ggv~~~~ 216 (551)
+||++|||+++-
T Consensus 99 -vtia~ggvlp~i 110 (123)
T 2nqb_C 99 -VTIAQGGVLPNI 110 (123)
T ss_dssp -EEETTCCCCCCC
T ss_pred -ceeCCCCcCCCc
Confidence 899999999754
No 6
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.95 E-value=9.3e-29 Score=225.07 Aligned_cols=91 Identities=27% Similarity=0.535 Sum_probs=88.5
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcCC
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQD 203 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~~ 203 (551)
++|+|||+||||+||++.+++||+++|||||+||||||++||||+|||+|+++++++|+|+||++||+||+||+.||++
T Consensus 22 agLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll~~- 100 (131)
T 1id3_C 22 AGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGN- 100 (131)
T ss_dssp GTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHTTT-
T ss_pred CCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHhcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CccccCCcccccc
Q psy1414 204 EHTSDSGSIVHSV 216 (551)
Q Consensus 204 ~~ti~~ggv~~~~ 216 (551)
+||++|||+++-
T Consensus 101 -vtIa~ggvlP~i 112 (131)
T 1id3_C 101 -VTIAQGGVLPNI 112 (131)
T ss_dssp -EEETTCCCCCCC
T ss_pred -ceecCCccCCCc
Confidence 899999999653
No 7
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.95 E-value=6.9e-29 Score=225.09 Aligned_cols=90 Identities=27% Similarity=0.500 Sum_probs=86.4
Q ss_pred CcccccHhHHHHhhhcCccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcC
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQ-YKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQ 202 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~-~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~ 202 (551)
++|+|||+||||+||++.|+ +||+++|+|||+||||||++||||+|||+|+++++++|||+||++||+||+||++||+
T Consensus 24 agLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll~- 102 (128)
T 1f66_C 24 AGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK- 102 (128)
T ss_dssp HTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCC-
T ss_pred CCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhhc-
Confidence 99999999999999999987 5999999999999999999999999999999999999999999999999999999996
Q ss_pred CCccccCCcccccc
Q psy1414 203 DEHTSDSGSIVHSV 216 (551)
Q Consensus 203 ~~~ti~~ggv~~~~ 216 (551)
+||++|||++.-
T Consensus 103 --~tia~ggv~P~i 114 (128)
T 1f66_C 103 --ATIAGGGVIPHI 114 (128)
T ss_dssp --SEETTCCCCCCC
T ss_pred --ceecCCccCCCC
Confidence 599999999653
No 8
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.95 E-value=9e-29 Score=224.60 Aligned_cols=91 Identities=29% Similarity=0.531 Sum_probs=88.5
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcCC
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQD 203 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~~ 203 (551)
++|+|||+||||+||++.+++||+++|||||+||||||++||||+|||+|+++++++|+|+||++||+||+||+.||++
T Consensus 22 agLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~~~- 100 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGK- 100 (129)
T ss_dssp HTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTTT-
T ss_pred CceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHhCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CccccCCcccccc
Q psy1414 204 EHTSDSGSIVHSV 216 (551)
Q Consensus 204 ~~ti~~ggv~~~~ 216 (551)
+||++|||++.-
T Consensus 101 -vtIa~ggvlP~i 112 (129)
T 1tzy_A 101 -VTIAQGGVLPNI 112 (129)
T ss_dssp -EEETTCCCCCCC
T ss_pred -CeecCCCcCCCC
Confidence 899999999654
No 9
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=99.95 E-value=6.4e-28 Score=254.52 Aligned_cols=186 Identities=16% Similarity=0.260 Sum_probs=150.4
Q ss_pred ccccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcc
Q psy1414 299 SELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNV 378 (551)
Q Consensus 299 ~~~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~ 378 (551)
...-+.+++.|++.||+.|++||+.|+++|.+++.+..+.++++++..|||||++||+++..||.+||++++..++ ..+
T Consensus 38 ~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~pl~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~~~~~~-~~~ 116 (402)
T 2dfk_A 38 RDQMRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDP-HLS 116 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCSSCG-GGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHccCCC-chh
Confidence 3345667999999999999999999999999999876677899999999999999999999999999998754332 346
Q ss_pred cchhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCcccccccc
Q psy1414 379 VIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQS 458 (551)
Q Consensus 379 ~IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 458 (551)
.||.||++++ ..|++|+.||+|+++ +.+.|. ++++++.+..|++.
T Consensus 117 ~ig~ifl~~~--~~f~~Y~~Y~~n~~~--a~~~l~-------------------------------~~~~~~~f~~fl~~ 161 (402)
T 2dfk_A 117 EIGPCFLEHQ--DGFWIYSEYCNNHLD--ACMELS-------------------------------KLMKDSRYQHFFEA 161 (402)
T ss_dssp CCHHHHHHTT--TGGGHHHHHHHHHHH--HHHHHH-------------------------------HHTTSHHHHHHHHH
T ss_pred hHHHHHHHHH--hhhHHHHHHHHhhHH--HHHHHH-------------------------------HHHcChHHHHHHHH
Confidence 8999999976 689999999999753 444433 33334333333332
Q ss_pred ccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHH
Q psy1414 459 GGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLKALQVDLSD 521 (551)
Q Consensus 459 ~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~~v~~~i~~ 521 (551)
++.+..+..+.|++||++|||||.+|+++|++|+|+|+. ++|+++|++|+..|+.++..+..
T Consensus 162 -~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~~~d~~~L~~Al~~i~~v~~~iNe 224 (402)
T 2dfk_A 162 -CRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINE 224 (402)
T ss_dssp -HHHHTTCCSCCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHhhhhcccCCHHHHHhHHHHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 112233345789999999999999999999999999975 78999999999999999888764
No 10
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=99.95 E-value=7.6e-28 Score=232.29 Aligned_cols=179 Identities=17% Similarity=0.285 Sum_probs=146.0
Q ss_pred HHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccchh
Q psy1414 303 YEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVIGS 382 (551)
Q Consensus 303 y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~IG~ 382 (551)
+.+++.|++.||+.|++||+.|+++|..++.+. +.+++.++..|||||++|++++..||.+||++.+.++ ....||.
T Consensus 14 R~~vi~ELi~TE~~Yv~~L~~l~~~y~~pl~~~-~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~--~~~~ig~ 90 (209)
T 1by1_A 14 YNVVLQNILETENEYSKELQTVLSTYLRPLQTS-EKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLPE--AQQRVGG 90 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-SSSSSSGGGTTHHHHHHHHHHHHHHHHHHHHHHHTTC--SSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCCc--chhhHHH
Confidence 456999999999999999999999999998763 4578899999999999999999999999999876443 4578999
Q ss_pred hHHhhhhhccch-hHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccccccccc
Q psy1414 383 CLEELAEAAEFD-VYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQ 461 (551)
Q Consensus 383 CF~e~ae~~eFd-iY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 461 (551)
||.+++ ..|. +|+.||+|+++ +.+.+ .++ ++.+..|++..+.
T Consensus 91 ~f~~~~--~~f~~~Y~~Y~~n~~~--a~~~l-------------------------------~~~--~~~f~~fl~~~~~ 133 (209)
T 1by1_A 91 CFLNLM--PQMKTLYLTYCANHPS--AVNVL-------------------------------TEH--SEELGEFMETKGA 133 (209)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHH--HHHHH-------------------------------HHH--TTTHHHHTTTTCC
T ss_pred HHHHHH--HHHHHHHHHHHHHHHH--HHHHH-------------------------------HHh--CHHHHHHHHHhcC
Confidence 999987 6795 99999999753 33332 111 3344444443211
Q ss_pred hhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHHHh
Q psy1414 462 GFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLKALQVDLSDSL 523 (551)
Q Consensus 462 ~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~~v~~~i~~~~ 523 (551)
..+-+..|++||++|||||.+|+++|++|+|+|+. |+|+.++++|+..|+.++..+....
T Consensus 134 --~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~h~d~~~l~~Al~~i~~v~~~iNe~~ 194 (209)
T 1by1_A 134 --SSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVR 194 (209)
T ss_dssp --CSSTTTHHHHHTTSTTTGGGTHHHHHHHHHHSSCCCSSSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCcCCHHHHhhHHHHHHhHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 12335788999999999999999999999999985 7899999999999999999987654
No 11
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.95 E-value=1.8e-28 Score=226.82 Aligned_cols=91 Identities=29% Similarity=0.533 Sum_probs=88.6
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcCC
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQD 203 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~~ 203 (551)
++|+|||+||+|+||+++|++||+++||||||||||||++||||+|||+|+++++++|+|+||++||+||+||+.||++
T Consensus 41 agLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll~~- 119 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGR- 119 (149)
T ss_dssp HTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHTTT-
T ss_pred CCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHhcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CccccCCcccccc
Q psy1414 204 EHTSDSGSIVHSV 216 (551)
Q Consensus 204 ~~ti~~ggv~~~~ 216 (551)
+||++|||++.-
T Consensus 120 -vtIa~gGVlP~i 131 (149)
T 2f8n_K 120 -VTIAQGGVLPNI 131 (149)
T ss_dssp -EEETTCCCCCCC
T ss_pred -ceEcCCCCCCCc
Confidence 899999999654
No 12
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=99.95 E-value=4.8e-27 Score=241.83 Aligned_cols=183 Identities=18% Similarity=0.219 Sum_probs=145.8
Q ss_pred cHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccch
Q psy1414 302 TYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVIG 381 (551)
Q Consensus 302 ~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~IG 381 (551)
-+.+++.|++.||+.|++||+.|+++|+.++.+. +.++++++..|||||++||+++..||.+||++..... ..+.||
T Consensus 19 kR~~vi~Eli~TE~~Yv~~L~~l~~~y~~~l~~~-~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~--~~~~ig 95 (346)
T 2z0q_A 19 KRQEAIFELSQGEEDLIEDLKLAKKAYHDPMLKL-SIMTEQELNQIFGTLDSLIPLHEELLSQLRDVRKPDG--STEHVG 95 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT-TSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCTTS--CCSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCC--ccchHH
Confidence 4667999999999999999999999999999884 4578999999999999999999999999999875332 467899
Q ss_pred hhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccccccccc
Q psy1414 382 SCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQ 461 (551)
Q Consensus 382 ~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 461 (551)
.||++++ ..|++|+.||+|+++ +.+. +.++..+|.+..|++.. .
T Consensus 96 ~~f~~~~--~~~~~Y~~Y~~n~~~--a~~~-------------------------------l~~~~~~~~f~~fl~~~-~ 139 (346)
T 2z0q_A 96 PILVGWL--PCLSSYDSYCSNQVA--AKAL-------------------------------LDHKKQDHRVQDFLQRC-L 139 (346)
T ss_dssp HHHHHHG--GGGGHHHHHHHHHHH--HHHH-------------------------------HHHHTTCHHHHCC------
T ss_pred HHHHHHh--hHHHHHHHHHHCHHH--HHHH-------------------------------HHHhhcCHHHHHHHHHH-H
Confidence 9999987 689999999999853 3443 22333455555565542 1
Q ss_pred hhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHHHh
Q psy1414 462 GFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLKALQVDLSDSL 523 (551)
Q Consensus 462 ~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~~v~~~i~~~~ 523 (551)
.-..+.+..|++||++||||+.+|+++|++|+|+|+. ++|+++|++|+..|+.++..+....
T Consensus 140 ~~~~~~~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~iN~~~ 202 (346)
T 2z0q_A 140 ESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAEINTKT 202 (346)
T ss_dssp --------CTTTGGGHHHHHHHHHHHHHHHHHHTSCTTSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCccCCCCCHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234557899999999999999999999999999985 8899999999999999998887654
No 13
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=99.94 E-value=2e-27 Score=254.39 Aligned_cols=186 Identities=16% Similarity=0.237 Sum_probs=150.7
Q ss_pred ccccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcc
Q psy1414 299 SELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNV 378 (551)
Q Consensus 299 ~~~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~ 378 (551)
....+.+++.|++.||+.|++||+.|+++|++++.+..+.+++.++..|||||++||+++..||.+||++++..++ ...
T Consensus 115 ~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~~~~~~-~~~ 193 (466)
T 2pz1_A 115 KDQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERP-HLS 193 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCSSCG-GGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHccCCC-ccc
Confidence 3446778999999999999999999999999999876677899999999999999999999999999998764332 346
Q ss_pred cchhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCcccccccc
Q psy1414 379 VIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQS 458 (551)
Q Consensus 379 ~IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 458 (551)
.||.||++++ ..|++|+.||+|+++ +.+.|. ++++++.+..|++.
T Consensus 194 ~ig~~fl~~~--~~f~~Y~~Y~~n~~~--a~~~l~-------------------------------~~~~~~~f~~f~~~ 238 (466)
T 2pz1_A 194 ELGACFLEHQ--ADFQIYSEYCNNHPN--ACVELS-------------------------------RLTKLSKYVYFFEA 238 (466)
T ss_dssp CCHHHHHHTH--HHHTTHHHHHHHHHH--HHHHHH-------------------------------HHHTCHHHHHHHHH
T ss_pred hHHHHHHHhh--HHHHHHHHHHHhhHH--HHHHHH-------------------------------HHHhccHHHHHHHH
Confidence 8999999976 689999999999753 444333 33334333333332
Q ss_pred ccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHH
Q psy1414 459 GGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLKALQVDLSD 521 (551)
Q Consensus 459 ~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~~v~~~i~~ 521 (551)
++.+..+.++.|++||++|||||.+|+++|++|+|+|+. ++|+++|++|+..|+.++..+..
T Consensus 239 -~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iNe 301 (466)
T 2pz1_A 239 -CRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINE 301 (466)
T ss_dssp -HHHHHTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhhhhccCCHHHHhhhHHHHhhhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 122233445789999999999999999999999999975 88999999999999999887754
No 14
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=99.94 E-value=8.9e-27 Score=242.73 Aligned_cols=182 Identities=19% Similarity=0.325 Sum_probs=145.1
Q ss_pred HHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCC-------
Q psy1414 303 YEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEA------- 375 (551)
Q Consensus 303 y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~------- 375 (551)
..+++.|++.||+.|++||+.|+++|+.++.+. +.++++++..|||||++||+++..||..||++++..++.
T Consensus 12 r~~vi~Eli~TE~~Yv~~L~~l~~~y~~pl~~~-~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~~~~~~ 90 (377)
T 1foe_A 12 LRKVICELLETERTYVKDLNCLMERYLKPLQKE-TFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRLVPDLEKLEKVD 90 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTS-SSSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSSCGGGCCSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhh
Confidence 456999999999999999999999999999873 457899999999999999999999999999987643211
Q ss_pred ----CcccchhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCc
Q psy1414 376 ----SNVVIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPE 451 (551)
Q Consensus 376 ----~~~~IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~ 451 (551)
....||.||++++ ..|++|+.||+|+++ +.+.|.+ +..+|.
T Consensus 91 ~~~~~~~~ig~~f~~~~--~~f~~Y~~Y~~n~~~--a~~~l~~-------------------------------~~~~~~ 135 (377)
T 1foe_A 91 QFKKVLFSLGGSFLYYA--DRFKLYSAFCASHTK--VPKVLVK-------------------------------AKTDTA 135 (377)
T ss_dssp GGHHHHHHHHHHHHHHT--TGGGGHHHHHHHTTT--HHHHHTT-------------------------------TTTCHH
T ss_pred hhhhHHHHHHHHHHHHH--HHHHHHHHHHHhHHH--HHHHHHH-------------------------------HhcCHH
Confidence 1246999999986 689999999999853 4443211 122333
Q ss_pred cccccccccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCC-CCchhHHHHHHHHHHHHHHHHHHHH
Q psy1414 452 VSIPLQSGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSP-DKEDRESLIQVEGLLKALQVDLSDS 522 (551)
Q Consensus 452 ~~~~~~~~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~-~~~D~~~l~~a~~~l~~v~~~i~~~ 522 (551)
+..|++.... +.+.+..|++||++|||||.+|+++|++|+|+|+ +++|+.+|++|+.+|+.++..+...
T Consensus 136 f~~fl~~~~~--~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~~~~v~~~iNe~ 205 (377)
T 1foe_A 136 FKAFLDAQNP--RQQHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEM 205 (377)
T ss_dssp HHHHHHHHCT--TCCGGGSHHHHTTHHHHHHTTHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh--ccccCcCHHHHhccchhhhccHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433111 1234688999999999999999999999999997 5889999999999999998776544
No 15
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=99.93 E-value=1.4e-26 Score=243.81 Aligned_cols=179 Identities=15% Similarity=0.255 Sum_probs=144.9
Q ss_pred ccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccc
Q psy1414 301 LTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVI 380 (551)
Q Consensus 301 ~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~I 380 (551)
.-..+++.|++.||+.|++||+.|+++|++++.+ .++++++..|||||++||+++..||.+||+.++.. ..+.|
T Consensus 24 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~~---~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~---~~~~i 97 (406)
T 2vrw_B 24 DKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR---FLKPQDMETIFVNIEELFSVHTHFLKELKDALAGP---GATTL 97 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT---TSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSG---GGTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCC---CccHH
Confidence 4566799999999999999999999999999975 46799999999999999999999999999998643 24779
Q ss_pred hhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhc-CCccccccccc
Q psy1414 381 GSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELK-NPEVSIPLQSG 459 (551)
Q Consensus 381 G~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 459 (551)
|.||++++ ..|.+|+.||+|+++ +.+.| .++++ +|.+..|++..
T Consensus 98 g~~f~~~~--~~~~~Y~~Y~~n~~~--a~~~l-------------------------------~~~~~~~~~f~~~l~~~ 142 (406)
T 2vrw_B 98 YQVFIKYK--ERFLVYGRYCSQVES--ASKHL-------------------------------DQVATAREDVQMKLEEC 142 (406)
T ss_dssp HHHHHHHT--TGGGHHHHHHHHHHH--HHHHH-------------------------------HHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHhHHH--HHHHH-------------------------------HHHHhcCHHHHHHHHHH
Confidence 99999987 679999999999753 34432 22221 33444444321
Q ss_pred cchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy1414 460 GQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSD 521 (551)
Q Consensus 460 ~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~~~D~~~l~~a~~~l~~v~~~i~~ 521 (551)
..-....++.|++||++|||||.+|+++|++|+|+|++++|+++|++|+..|+.++..+..
T Consensus 143 -~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~d~~~l~~Al~~i~~v~~~iNe 203 (406)
T 2vrw_B 143 -SQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQDATEKENLRLALDAMRDLAQCVNE 203 (406)
T ss_dssp -HHHHHTTSCCHHHHTTHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhccccCCcchHHHhhhHHHHHhhHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 1112234578999999999999999999999999998899999999999999999876643
No 16
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=99.93 E-value=3e-26 Score=239.36 Aligned_cols=184 Identities=15% Similarity=0.190 Sum_probs=147.5
Q ss_pred cHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccC-CCcccc
Q psy1414 302 TYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNE-ASNVVI 380 (551)
Q Consensus 302 ~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~-~~~~~I 380 (551)
-..+++.|++.||+.|++||+.|+++|+.++.+ .+.+++.++..|||||++||+++ .||.+||+++...++ ...+.|
T Consensus 24 kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~~-~~~l~~~~~~~iF~ni~~I~~~h-~fL~~l~~~~~~~~~~~~~~~i 101 (385)
T 1txd_A 24 KRQEVINELFYTERAHVRTLKVLDQVFYQRVSR-EGILSPSELRKIFSNLEDILQLH-IGLNEQMKAVRKRNETSVIDQI 101 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-HTCSCHHHHHHHHTTHHHHHHHH-HHHHHHHHHHHTTCTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHHHHhhcCCCcccH
Confidence 456799999999999999999999999999987 34578999999999999999999 999999998743322 245789
Q ss_pred hhhHHhhhhh---ccc-hhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhh-cCCccccc
Q psy1414 381 GSCLEELAEA---AEF-DVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEEL-KNPEVSIP 455 (551)
Q Consensus 381 G~CF~e~ae~---~eF-diY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~-~~~~~~~~ 455 (551)
|.||++++.. +.| ++|+.||+|+++ +.+. +.+++ .+|.+..|
T Consensus 102 g~~fl~~~~~~~~~~f~~~Y~~Y~~n~~~--a~~~-------------------------------l~~~~~~~~~f~~f 148 (385)
T 1txd_A 102 GEDLLTWFSGPGEEKLKHAAATFCSNQPF--ALEM-------------------------------IKSRQKKDSRFQTF 148 (385)
T ss_dssp HHHHHHHHSTHHHHHHHHHHHHHHHTHHH--HHHH-------------------------------HHHHHHHCHHHHHH
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHchHH--HHHH-------------------------------HHHHHhcCHHHHHH
Confidence 9999998642 467 999999999753 3333 22222 24445555
Q ss_pred cccccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy1414 456 LQSGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSD 521 (551)
Q Consensus 456 ~~~~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~~~D~~~l~~a~~~l~~v~~~i~~ 521 (551)
++. ++....+-+..|++||++|||||.+|+++|++|+|+|++++|+++|++|+..|+.++..+..
T Consensus 149 l~~-~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~d~~~l~~Al~~i~~v~~~iN~ 213 (385)
T 1txd_A 149 VQD-AESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWPTEREKVKKAADHCRQILNFVNQ 213 (385)
T ss_dssp HHH-HHHSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHhCccccCCChHHHhhhHHhHhhhHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 443 11123445688999999999999999999999999999888999999999999999887754
No 17
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=99.93 E-value=6.5e-26 Score=226.38 Aligned_cols=186 Identities=16% Similarity=0.223 Sum_probs=146.9
Q ss_pred cHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCC-Ccccc
Q psy1414 302 TYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEA-SNVVI 380 (551)
Q Consensus 302 ~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~-~~~~I 380 (551)
-..++++|++.||+.|++||+.|+++|..++.+. +.+++.++..||+||++|++++..||.+||+.....++. ....|
T Consensus 82 kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~-~~l~~~~~~~iF~ni~~i~~~~~~fl~~L~~~~~~~~~~~~~~~i 160 (283)
T 3jv3_A 82 KRQGYIHELIVTEENYVNDLQLVTEIFQKPLTES-ELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMI 160 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHTT-CSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccc-CCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHhccccCCchhHH
Confidence 4567999999999999999999999999999873 457899999999999999999999999999987654322 44789
Q ss_pred hhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCcccccccccc
Q psy1414 381 GSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGG 460 (551)
Q Consensus 381 G~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 460 (551)
|.||..++ ..|.+|+.||+|+++ +.+.+.+..+ .+|.+..|++..
T Consensus 161 g~~f~~~~--~~~~~Y~~Y~~~~~~--a~~~l~~~~~------------------------------~~~~f~~~l~~~- 205 (283)
T 3jv3_A 161 GDILSAQL--PHMQPYIRFCSCQLN--GAALIQQKTD------------------------------EAPDFKEFVKRL- 205 (283)
T ss_dssp HHHHHHHG--GGGTHHHHHHHHHHH--HHHHHHHHHH------------------------------HCHHHHHHHHHH-
T ss_pred HHHHHHHH--hhchhHHHHHcCHHH--HHHHHHHHHh------------------------------cCHHHHHHHHHH-
Confidence 99998876 689999999999742 3333211111 123333333321
Q ss_pred chhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHh
Q psy1414 461 QGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSP-DKEDRESLIQVEGLLKALQVDLSDSL 523 (551)
Q Consensus 461 ~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~-~~~D~~~l~~a~~~l~~v~~~i~~~~ 523 (551)
..-..+-+..|++||++|||||.+|+++|++|+|+|+ +++|+..|++|+..|+.++..|....
T Consensus 206 ~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~iNe~~ 269 (283)
T 3jv3_A 206 AMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGV 269 (283)
T ss_dssp TTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHTTSCTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCccccCCCHHHHhhhhHHHhcchHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHH
Confidence 1112223478999999999999999999999999997 58899999999999999999987765
No 18
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=99.93 E-value=6.4e-26 Score=235.02 Aligned_cols=184 Identities=14% Similarity=0.198 Sum_probs=147.5
Q ss_pred ccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccc
Q psy1414 301 LTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVI 380 (551)
Q Consensus 301 ~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~I 380 (551)
.-..+++.|++.||+.|++||+.|+++|+.++.+ .+.+++.++..|||||++||+++..||..||+..+-.. ..+.|
T Consensus 20 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~~-~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~--~~~~i 96 (368)
T 1xcg_A 20 IDRQEVINELFVTEASHLRTLRVLDLIFYQRMKK-ENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGP--IIKEI 96 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHTCS--SCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC--CcCcH
Confidence 3556799999999999999999999999999987 34578999999999999999999999999999875322 45689
Q ss_pred hhhHHhhhh----hccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhh-cCCccccc
Q psy1414 381 GSCLEELAE----AAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEEL-KNPEVSIP 455 (551)
Q Consensus 381 G~CF~e~ae----~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~-~~~~~~~~ 455 (551)
|.||+++.. ..-|++|+.||+|+++ +.+.| .+++ .+|.+..|
T Consensus 97 g~~f~~~~~~~~~~~~~~~Y~~Y~~~~~~--a~~~l-------------------------------~~~~~~~~~f~~f 143 (368)
T 1xcg_A 97 SDLMLARFDGPAREELQQVAAQFCSYQSI--ALELI-------------------------------KTKQRKESRFQLF 143 (368)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHTTHHH--HHHHH-------------------------------HHHHHHCHHHHHH
T ss_pred HHHHHHHccchhHHHHHHHHHHHHhhHHH--HHHHH-------------------------------HHHHhCCHHHHHH
Confidence 999998642 2458999999999753 44432 2222 24444444
Q ss_pred cccccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHH
Q psy1414 456 LQSGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLKALQVDLSD 521 (551)
Q Consensus 456 ~~~~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~~v~~~i~~ 521 (551)
++. ++....+.+..|++||++|||||.+|+++|++|+|+|++ ++|+++|++|+..|+.++..+..
T Consensus 144 l~~-~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~vN~ 209 (368)
T 1xcg_A 144 MQE-AESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNE 209 (368)
T ss_dssp HHH-HHTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHhChhhccCChHHHhhhHhhhhhhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 443 122334557899999999999999999999999999975 78999999999999998887754
No 19
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=99.93 E-value=4.9e-26 Score=236.37 Aligned_cols=187 Identities=15% Similarity=0.218 Sum_probs=148.6
Q ss_pred ccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccc
Q psy1414 301 LTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVI 380 (551)
Q Consensus 301 ~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~I 380 (551)
.-..+++.|++.||+.|++||+.|+++|+.++.+. +.++++++..|||||++||+++..||..||+...-..+ ..+.|
T Consensus 26 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~-~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~-~~~~i 103 (377)
T 3p6a_A 26 VKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-LFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGY-LIEEI 103 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH-TSSCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHC---CCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhccCC-CCCcH
Confidence 35667999999999999999999999999999874 45789999999999999999999999999987643222 35789
Q ss_pred hhhHHhhhhh---ccc-hhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhh-cCCccccc
Q psy1414 381 GSCLEELAEA---AEF-DVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEEL-KNPEVSIP 455 (551)
Q Consensus 381 G~CF~e~ae~---~eF-diY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~-~~~~~~~~ 455 (551)
|.||++++.. +.| ++|+.||+|++ .+.+.| .+++ .+|.+..|
T Consensus 104 g~~fl~~~~~~~~~~~~~~Y~~Y~~n~~--~a~~~l-------------------------------~~~~~~~~~f~~~ 150 (377)
T 3p6a_A 104 GDVLLARFDGAEGSWFQKISSRFCSRQS--FALEQL-------------------------------KAKQRKDPRFCAF 150 (377)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHTHH--HHHHHH-------------------------------HHHHHHCHHHHHH
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHhHH--HHHHHH-------------------------------HHHHhcCHHHHHH
Confidence 9999998743 225 89999999975 344432 2222 23344444
Q ss_pred cccccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy1414 456 LQSGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSL 523 (551)
Q Consensus 456 ~~~~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~~~D~~~l~~a~~~l~~v~~~i~~~~ 523 (551)
++. ++....+.++.|++||++|||||.+|+++|++|+|+|++++|++++++|+..|+.++..+....
T Consensus 151 l~~-~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~d~~~l~~A~~~i~~v~~~in~~~ 217 (377)
T 3p6a_A 151 VQE-AESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPTEREKVELAAECCREILHHVNQAV 217 (377)
T ss_dssp HHH-HHTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHhCcccCCCCHHHHHHHHHHHhhhHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 442 2223455568899999999999999999999999999998999999999999999999876443
No 20
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=99.92 E-value=7.6e-26 Score=234.68 Aligned_cols=176 Identities=18% Similarity=0.272 Sum_probs=140.5
Q ss_pred cHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCC--CCCh---hHHHHhhhcHHHHHHHHH-HHHHHHHHhhccccCC
Q psy1414 302 TYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIP--PGKC---KELDQMFANLMDIYEFSC-NLVGILEDNLEMCNEA 375 (551)
Q Consensus 302 ~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~--~~~~---~~v~~iFgNI~dIyef~~-~~L~~LEd~~e~~~~~ 375 (551)
-+.+++.|++.||+.|++||+.|+++|+.++.+... .+++ +++..|||||++||+|+. .||.+||++.+.
T Consensus 11 kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~pl~~~~~~~~~p~~~~~~~~~iF~ni~~I~~~h~~~fl~~Le~~~~~---- 86 (353)
T 1kz7_A 11 LRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCIDC---- 86 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGCTTTTTTSCHHHHHTHHHHHTTHHHHHHHHHHTHHHHHHTTTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChhhhhhHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----
Confidence 456799999999999999999999999999976431 3443 589999999999999996 799999998642
Q ss_pred CcccchhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccc
Q psy1414 376 SNVVIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIP 455 (551)
Q Consensus 376 ~~~~IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~ 455 (551)
++.||.||++++ ..|++|+.||+|+++ +.+.+ +.+.+. .|
T Consensus 87 -~~~ig~~fl~~~--~~f~~Y~~Y~~n~~~--a~~~l--------------------------------~~~~~~---~f 126 (353)
T 1kz7_A 87 -PELVGRCFLERM--EEFQIYEKYCQNKPR--SESLW--------------------------------RQCSDC---PF 126 (353)
T ss_dssp -GGGHHHHHHTTT--TGGGHHHHHHHHHHH--HHHHH--------------------------------HHHTTC---HH
T ss_pred -HHHHHHHHHHhh--HHHHHHHHHHhChHH--HHHHH--------------------------------HHhhcc---hH
Confidence 367999999986 689999999999853 33321 111111 12
Q ss_pred cccccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy1414 456 LQSGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSL 523 (551)
Q Consensus 456 ~~~~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~~~D~~~l~~a~~~l~~v~~~i~~~~ 523 (551)
|+.... +.+.+..|++||++|||||.+|+++|++|+|+|++++|+++|++|+..|+.++..+....
T Consensus 127 ~~~~~~--~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~d~~~L~~Al~~i~~v~~~iN~~~ 192 (353)
T 1kz7_A 127 FQECQK--KLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSM 192 (353)
T ss_dssp HHHHHH--HHTCSSCHHHHHTHHHHHHHHHHHHHHHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 221100 123357899999999999999999999999999998999999999999999999888754
No 21
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=99.91 E-value=6.1e-25 Score=240.51 Aligned_cols=187 Identities=15% Similarity=0.219 Sum_probs=148.1
Q ss_pred ccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccc
Q psy1414 301 LTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVI 380 (551)
Q Consensus 301 ~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~I 380 (551)
.-..+++.|++.||+.|++||+.|+++|+.++.. .+.+++.++..||+||++||+++..||..||+.+.-..+ ..+.|
T Consensus 179 ~kRq~vi~ELi~TE~~YV~~L~~l~~~y~~pl~~-~~~l~~~~~~~IF~nie~I~~~h~~fL~~L~~~~~~~~~-~~~~I 256 (536)
T 3odw_A 179 VKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAE-CLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGY-LIEEI 256 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTSSCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTC----CCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCc-ccccH
Confidence 3556799999999999999999999999999987 345889999999999999999999999999997643221 35789
Q ss_pred hhhHHhhhhh---ccc-hhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhh-cCCccccc
Q psy1414 381 GSCLEELAEA---AEF-DVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEEL-KNPEVSIP 455 (551)
Q Consensus 381 G~CF~e~ae~---~eF-diY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~-~~~~~~~~ 455 (551)
|.||++++.. +.| ++|+.||+|++ .+.+.|. +++ .+|.+..|
T Consensus 257 gdifl~~~~~~~~~~f~~~Y~~Y~~n~~--~a~~~l~-------------------------------~~~~~~~~f~~f 303 (536)
T 3odw_A 257 GDVLLARFDGAEGSWFQKISSRFCSRQS--FALEQLK-------------------------------AKQRKDPRFCAF 303 (536)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHTHH--HHHHHHH-------------------------------HHHHHCHHHHHH
T ss_pred HHHHHHHcchhhhHHHHHHHHHHHhhHH--HHHHHHH-------------------------------HHHhhCHHHHHH
Confidence 9999998743 235 89999999974 3444322 212 23333334
Q ss_pred cccccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy1414 456 LQSGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSL 523 (551)
Q Consensus 456 ~~~~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~~~D~~~l~~a~~~l~~v~~~i~~~~ 523 (551)
++. ++....+-++.|++||++|||||.+|+++|++|+|+|+++.|+++|++|+..|+.++..|....
T Consensus 304 l~~-~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~LlK~T~~~~d~~~L~~Al~~i~~v~~~iNe~~ 370 (536)
T 3odw_A 304 VQE-AESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPTEREKVELAAECCREILHHVNQAV 370 (536)
T ss_dssp HHH-HTTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 2223345578899999999999999999999999999998999999999999999999876543
No 22
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=99.91 E-value=6.3e-25 Score=227.83 Aligned_cols=173 Identities=15% Similarity=0.179 Sum_probs=138.5
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCC-CCChhHHHHhhhcHHHHHHHHHH-HHHHHHHhhccccCCCcccch
Q psy1414 304 EEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIP-PGKCKELDQMFANLMDIYEFSCN-LVGILEDNLEMCNEASNVVIG 381 (551)
Q Consensus 304 ~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~-~~~~~~v~~iFgNI~dIyef~~~-~L~~LEd~~e~~~~~~~~~IG 381 (551)
.+++.|++.||+.|++||+.|+++|+.++.+... ....+++..|||||++||+++.. ||.+||++.+ + .+.||
T Consensus 14 ~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~~~p~~l~~~~~~iF~ni~~I~~~h~~~fl~~L~~~~~--~---~~~ig 88 (354)
T 2rgn_B 14 MYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLK--D---PDWLA 88 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCCCSSSGGGHHHHHTTHHHHHHHHHHTHHHHHHHHHS--C---GGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHc--C---HHHHH
Confidence 4699999999999999999999999999988532 22346789999999999999999 9999999874 2 36799
Q ss_pred hhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCccccccccccc
Q psy1414 382 SCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQ 461 (551)
Q Consensus 382 ~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 461 (551)
.||++++ ..|++|+.||+|++ .+.+.+. +|+. ..|.++..
T Consensus 89 ~~fl~~~--~~f~~Y~~Y~~n~~--~a~~~l~--------------~~~~---------~~f~~~~~------------- 128 (354)
T 2rgn_B 89 QLFIKHE--RRLHMYVVYCQNKP--KSEHVVS--------------EFGD---------SYFEELRQ------------- 128 (354)
T ss_dssp HHHHHTT--TTTHHHHHHHHTSH--HHHHHHT--------------TTSH---------HHHHHHHH-------------
T ss_pred HHHHHhH--HHHHHHHHHHhCcH--HHHHHHH--------------HHHH---------HHHHHHHH-------------
Confidence 9999986 68999999999975 3444321 1110 00111110
Q ss_pred hhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHHHh
Q psy1414 462 GFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLKALQVDLSDSL 523 (551)
Q Consensus 462 ~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~~v~~~i~~~~ 523 (551)
..+.++.|++||++|||||.+|+++|++|+|+|+. ++|+.+|++|+..|+.++..+....
T Consensus 129 --~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~in~~~ 189 (354)
T 2rgn_B 129 --QLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVEVMCFVPKRCNDMM 189 (354)
T ss_dssp --HHCCSSCHHHHTTHHHHHHTSHHHHHHHHHHHTSSSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hcCCCCCHHHHhhhHHHHHhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12235789999999999999999999999999974 8899999999999999999888764
No 23
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=228.81 Aligned_cols=186 Identities=15% Similarity=0.201 Sum_probs=147.0
Q ss_pred cccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCccc
Q psy1414 300 ELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVV 379 (551)
Q Consensus 300 ~~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~ 379 (551)
+.-..+++.|++.||+.|++||+.|+++|+.++.+ .+.+++.++..|||||++||+++..||..||++.+-.. ....
T Consensus 61 e~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~-~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~--~~~~ 137 (418)
T 3t06_A 61 EIDRQEVINELFVTEASHLRTLRVLDLIFYQRMKK-ENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGP--IIKE 137 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHGGGCS--SCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhcCC--CcCc
Confidence 34566799999999999999999999999999987 45688999999999999999999999999999875332 4578
Q ss_pred chhhHHhhhh----hccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhh-cCCcccc
Q psy1414 380 IGSCLEELAE----AAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEEL-KNPEVSI 454 (551)
Q Consensus 380 IG~CF~e~ae----~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~-~~~~~~~ 454 (551)
||.||+++.. ..-|.+|+.||+|++ .+.+.+ .+++ .++.+..
T Consensus 138 ig~ifl~~~~~~~~~~~~~~Y~~Y~~n~~--~a~~~l-------------------------------~~~~~~~~~f~~ 184 (418)
T 3t06_A 138 ISDLMLARFDGPAREELQQVAAQFCSYQS--IALELI-------------------------------KTKQRKESRFQL 184 (418)
T ss_dssp CHHHHHHHHSTHHHHHHHHHHHHHHHTHH--HHHHHH-------------------------------HHHHHHCHHHHH
T ss_pred HHHHHHHhcchhhhHHHhhhhHHHhhhHH--HHHHHH-------------------------------HHHHhcCHHHHH
Confidence 9999998652 123699999999974 344432 2222 1334444
Q ss_pred ccccccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHHH
Q psy1414 455 PLQSGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLKALQVDLSDS 522 (551)
Q Consensus 455 ~~~~~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~~v~~~i~~~ 522 (551)
|++. ++....+-+..|++||++|||||.+|+++|++|+|+|+. ++|+++|++|+..|+.++..+...
T Consensus 185 fl~~-~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~v~~~iN~~ 252 (418)
T 3t06_A 185 FMQE-AESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEA 252 (418)
T ss_dssp HHHH-HTTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHhCcccccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 112233446889999999999999999999999999975 779999999999999999886543
No 24
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=99.91 E-value=2.8e-24 Score=218.64 Aligned_cols=172 Identities=21% Similarity=0.329 Sum_probs=134.2
Q ss_pred HHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcC---CCCChhHHHHhhhcHHHHHHHHHH-HHHHHHHhhccccCCCcc
Q psy1414 303 YEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLI---PPGKCKELDQMFANLMDIYEFSCN-LVGILEDNLEMCNEASNV 378 (551)
Q Consensus 303 y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~---~~~~~~~v~~iFgNI~dIyef~~~-~L~~LEd~~e~~~~~~~~ 378 (551)
..+++.|++.||+.|++||+.|+++|+.++.+.. +....+++..|||||++||+++.+ ||.+||++.+ .++
T Consensus 10 R~~vi~El~~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~~~~iF~ni~~i~~~h~~~fl~~L~~~~~-----~~~ 84 (311)
T 1nty_A 10 KEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQ-----LPE 84 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTTTTCHHHHHTTHHHHHHHHHHTHHHHHHHTTT-----CGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHC-----CHH
Confidence 4569999999999999999999999999998742 222236789999999999999996 9999999754 236
Q ss_pred cchhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhcCCcccccccc
Q psy1414 379 VIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQS 458 (551)
Q Consensus 379 ~IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 458 (551)
.||.||.+++ ..|++|+.||+|+++ +.+.|.+ | . ..||+.
T Consensus 85 ~ig~~f~~~~--~~~~~Y~~Y~~n~~~--a~~~l~~--------------~-----------------~-----~~f~~~ 124 (311)
T 1nty_A 85 DVGHCFVTWA--DKFQMYVTYCKNKPD--STQLILE--------------H-----------------A-----GSYFDE 124 (311)
T ss_dssp GTHHHHHHTT--TTTHHHHHHHHHHHH--HHHHHHH--------------H-----------------T-----TTHHHH
T ss_pred HHHHHHHHHH--HHhHHHHHHHhCcHH--HHHHHHH--------------H-----------------H-----HHHHHH
Confidence 7999999987 689999999999753 3332111 1 0 011111
Q ss_pred ccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy1414 459 GGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSL 523 (551)
Q Consensus 459 ~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~~~D~~~l~~a~~~l~~v~~~i~~~~ 523 (551)
... ..+.+..|++||++|||||.+|+++|++|+|+|++ |+.++++|+..|+.++..+....
T Consensus 125 ~~~--~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~--~h~~l~~Al~~~~~v~~~~N~~~ 185 (311)
T 1nty_A 125 IQQ--RHGLANSISSYLIKPVQRITKYQLLLKELLTCCEE--GKGEIKDGLEVMLSVPKRANDAM 185 (311)
T ss_dssp HHH--HHTCSSCHHHHHTHHHHHHHHHHHHHHHHHHTSCT--TCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--hccCCCCHHHHhhhhHHHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 000 11234788999999999999999999999999986 45679999999999999887664
No 25
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=1e-24 Score=230.71 Aligned_cols=186 Identities=15% Similarity=0.121 Sum_probs=145.2
Q ss_pred cccHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc--------CCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhcc
Q psy1414 300 ELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKL--------IPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEM 371 (551)
Q Consensus 300 ~~~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~--------~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~ 371 (551)
+.-...++.|++.||+.|++||+.|+++|+.++.+. .+.++++++..|||||++||+++..||.+||+.++.
T Consensus 20 ~~kr~~ii~ELl~TE~~Yv~~L~~l~~~f~~pl~~~l~~~~~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~~ 99 (434)
T 3mpx_A 20 QSRALVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGLSELPAIHDLHQGILEELEERLSN 99 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 345567899999999999999999999999998653 235678999999999999999999999999999865
Q ss_pred ccCCCcccchhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhh-cCC
Q psy1414 372 CNEASNVVIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEEL-KNP 450 (551)
Q Consensus 372 ~~~~~~~~IG~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~-~~~ 450 (551)
.+ ..+.||.||++++ ..|.+|+.||+|+++ +.+.| .+++ .+|
T Consensus 100 ~~--~~~~ig~ifl~~~--~~~~~Y~~Y~~n~~~--a~~~l-------------------------------~~~~~~~~ 142 (434)
T 3mpx_A 100 WE--SQQKVADVFLARE--QGFDHHATHILQFDR--YLGLL-------------------------------SENCLHSP 142 (434)
T ss_dssp TT--TCCCCTHHHHTTT--TTHHHHHHHHHHHHH--HHHHH-------------------------------HHHHTTCH
T ss_pred cc--CcccHHHHHHHhh--HHHHHHHHHHHhHHH--HHHHH-------------------------------HHHHHhCh
Confidence 33 4688999999986 689999999999753 44432 2212 233
Q ss_pred ccccccccccchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHh
Q psy1414 451 EVSIPLQSGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSP-DKEDRESLIQVEGLLKALQVDLSDSL 523 (551)
Q Consensus 451 ~~~~~~~~~~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~-~~~D~~~l~~a~~~l~~v~~~i~~~~ 523 (551)
.+..|++.. +.-..+.+..|++||++|||||.+|+++|++|+|+|+ +++|++.|++|+..|+.++..+....
T Consensus 143 ~f~~~l~~~-~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iN~~~ 215 (434)
T 3mpx_A 143 RLAAAVREF-EQSVQGGSQTAKHRLLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSM 215 (434)
T ss_dssp HHHHHHHHH-HTC------CHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HcCcccCCCCHHHHHhhhHHhhhHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444321 1122345688999999999999999999999999976 58899999999999999998876543
No 26
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.90 E-value=3.5e-24 Score=236.31 Aligned_cols=178 Identities=15% Similarity=0.242 Sum_probs=146.1
Q ss_pred cHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCCCcccch
Q psy1414 302 TYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVIG 381 (551)
Q Consensus 302 ~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~~~~~IG 381 (551)
-..+++.|++.||+.|++||+.|+++|+.++.+ .++++++..||+||++||+++..||.+||+.++.. ..+.||
T Consensus 197 kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~L~~---~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~~~---~~~~ig 270 (587)
T 3ky9_A 197 KRCCCLREIQQTEEKYTDTLGSIQQHFLKPLQR---FLKPQDIEIIFINIEDLLRVHTHFLKEMKEALGTP---GAANLY 270 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHT---TSCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhcc---CccHHH
Confidence 456799999999999999999999999999986 56799999999999999999999999999988643 357899
Q ss_pred hhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhh-cCCcccccccccc
Q psy1414 382 SCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEEL-KNPEVSIPLQSGG 460 (551)
Q Consensus 382 ~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~ 460 (551)
.||.+++ ..|.+|+.||+|++ .+.+. +.+++ .+|.+..|++. +
T Consensus 271 ~if~~~~--~~f~~Y~~Y~~n~~--~a~~~-------------------------------l~~~~~~~~~f~~~l~~-~ 314 (587)
T 3ky9_A 271 QVFIKYK--ERFLVYGRYCSQVE--SASKH-------------------------------LDRVAAAREDVQMKLEE-C 314 (587)
T ss_dssp HHHHHTT--TGGGHHHHHHHHHH--HHHHH-------------------------------HHHHHHTCHHHHTTTTH-H
T ss_pred HHHHHHH--HhcchHHHHHhChH--HHHHH-------------------------------HHHHHhcCHHHHHHHHH-H
Confidence 9999987 68999999999975 33443 22222 23444444442 1
Q ss_pred chhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy1414 461 QGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSD 521 (551)
Q Consensus 461 ~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~~~D~~~l~~a~~~l~~v~~~i~~ 521 (551)
.....+-+..|++||++|||||.+|+++|++|+|+|++++|+++|++|+..|+.++..+..
T Consensus 315 ~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~T~~~~d~~~L~~Al~~i~~v~~~iNe 375 (587)
T 3ky9_A 315 SQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQEAMEKENLRLALDAMRDLAQCVNE 375 (587)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHTTHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccCCCCHHHHHhHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 1122234578999999999999999999999999999999999999999999999987754
No 27
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.88 E-value=2e-24 Score=231.93 Aligned_cols=185 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcCCCCChhHHHHhhhcHHHHHHHHHHHHHHHHHhhccccCC-Ccccc
Q psy1414 302 TYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEA-SNVVI 380 (551)
Q Consensus 302 ~y~evv~eli~tEr~YirdL~~Ii~~f~~~~~~~~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd~~e~~~~~-~~~~I 380 (551)
-..+++.|++.||+.|++||+.|+++|+.++.+. +.+++.++..|||||++||+++..||..||++....++. +...|
T Consensus 27 kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~-~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~~~~~~~~i 105 (510)
T 3jzy_A 27 KRQGYIHELIQTEERYMADLQLVVEVFQKRMAES-GFLTEGEMALIFVNWKELIMSNTKLLKALRVRKKTGGEKMPVQMI 105 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHhccCCCCchhhH
Confidence 4567999999999999999999999999999763 457789999999999999999999999999987644321 34689
Q ss_pred hhhHHhhhhhccchhHHHHhhccCCCCchhHHhhhhcCCCcccccccccccccccccccchHHHHhhc-CCccccccccc
Q psy1414 381 GSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELK-NPEVSIPLQSG 459 (551)
Q Consensus 381 G~CF~e~ae~~eFdiY~~Y~~n~~~~~~~~~l~~~~~~~~~~~~~~~dc~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 459 (551)
|.||.+++ ..|++|+.||+|++. +.+.+ .+++. +|.+..|++..
T Consensus 106 g~~f~~~~--~~~~~Y~~Y~~~~~~--a~~~l-------------------------------~~~~~~~~~f~~~~~~~ 150 (510)
T 3jzy_A 106 GDILAAEL--SHMQAYIRFCSCQLN--GAALL-------------------------------QQKTDEDTDFKEFLKKL 150 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHh--HHHHHHHHHHHhHHH--HHHHH-------------------------------HHHHhcCHHHHHHHHHH
Confidence 99998876 689999999999753 33322 12222 34445554432
Q ss_pred cchhhhhHHhcccccchhhHHHHHhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHHHh
Q psy1414 460 GQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPD-KEDRESLIQVEGLLKALQVDLSDSL 523 (551)
Q Consensus 460 ~~~f~~av~y~Lp~lLL~PV~hi~kY~~~l~~L~k~s~~-~~D~~~l~~a~~~l~~v~~~i~~~~ 523 (551)
..-..+-++.|++||++|||||.+|+++|++|+|+|+. ++|+++|++|+..|+.++..+....
T Consensus 151 -~~~~~~~~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~in~~~ 214 (510)
T 3jzy_A 151 -ASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQVNEGV 214 (510)
T ss_dssp -----------------------------------------------------------------
T ss_pred -HhCccccCCCHHHHhChhhhhhcCcHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233445889999999999999999999999999975 7899999999999999998776544
No 28
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.67 E-value=4.7e-17 Score=141.29 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=62.5
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhc
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFY 201 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~ 201 (551)
++++||++||+|+||.+.+..||++.|+||+++++||++++++++|+|.|++.++++|+|+||..||++|++|+.|+.
T Consensus 8 ~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~d 85 (98)
T 1jfi_A 8 YNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKA 85 (98)
T ss_dssp --CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC----------
T ss_pred cCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHh
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999986
No 29
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.39 E-value=3.4e-13 Score=116.70 Aligned_cols=78 Identities=10% Similarity=0.095 Sum_probs=72.0
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhc
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFY 201 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~ 201 (551)
.+++||++||+|+||.+....||+..|++|++.++||++.++++.|++.|++.++++|+|+||..||++|++|+.|..
T Consensus 16 ~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~d 93 (97)
T 1n1j_B 16 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLID 93 (97)
T ss_dssp ----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred CCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHHh
Confidence 478999999999999998889999999999999999999999999999999999999999999999999999998875
No 30
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.39 E-value=6.4e-13 Score=119.08 Aligned_cols=76 Identities=12% Similarity=0.137 Sum_probs=72.5
Q ss_pred cccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhh
Q psy1414 125 CLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMF 200 (551)
Q Consensus 125 ~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf 200 (551)
..+||++||+|+||.+....+|+..|++|+++++||++++|++.|++.|++.++++|+|+||..||++|++|+.|-
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999998654
No 31
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=98.97 E-value=2.8e-10 Score=104.67 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=62.7
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccccchhhhhhcCchHHHhhhc
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYV-KNIRHVEVAQQDIKVAMYADKVLMDMFY 201 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a-~~~k~~rItp~hi~~Ai~~D~eL~~Lf~ 201 (551)
..++||++||+++||.+....+|+..|+++++.++||++.++.+.|++.| +..++++|+++||..||.+++.|+.|..
T Consensus 16 ~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~d 94 (140)
T 2byk_A 16 AETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQ 94 (140)
T ss_dssp -------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTT
T ss_pred cCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhc
Confidence 68999999999999999888999999999999999999999999999999 9999999999999999999999998885
No 32
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.65 E-value=2.3e-08 Score=87.30 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=62.2
Q ss_pred ccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCc
Q psy1414 128 LPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYAD 193 (551)
Q Consensus 128 FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D 193 (551)
||+..|+|+++++.. .||+..+..+++.+|||++.+|++.|.++++..+++.|||+||.+|+++.
T Consensus 30 ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 30 ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 899999999998766 79999999999999999999999999999999999999999999999865
No 33
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.65 E-value=2.4e-08 Score=87.20 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=62.6
Q ss_pred ccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCch
Q psy1414 128 LPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADK 194 (551)
Q Consensus 128 FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~ 194 (551)
||+..|+|+++++.. .||+..+..+|+.+|||++.+|++.|.++|+..+++.|||+||.+|+++..
T Consensus 30 ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 30 ITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 999999999998766 799999999999999999999999999999999999999999999998653
No 34
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.63 E-value=1.7e-07 Score=87.31 Aligned_cols=69 Identities=9% Similarity=0.084 Sum_probs=66.2
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCc
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYAD 193 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D 193 (551)
.++.||+..|.|++|++ ...|||+.+.++++.+||+++.+|.+.|.++|+..+++.|||+||..|++++
T Consensus 79 ~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 79 DGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp CSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 78999999999999988 7789999999999999999999999999999999999999999999999865
No 35
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=98.58 E-value=2.5e-08 Score=102.57 Aligned_cols=71 Identities=27% Similarity=0.450 Sum_probs=66.6
Q ss_pred chhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCccc
Q psy1414 223 ELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPLFI 293 (551)
Q Consensus 223 ~~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~e~ 293 (551)
++||+++|++++..|+.|+++|+.|+++|++++.+....+++.+++.||+||-+||++...|+.. ++.+++
T Consensus 1 ~~~y~~vi~Eli~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~ 72 (354)
T 1dbh_A 1 EQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEM 72 (354)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999998877899999999999999999999999998 777665
No 36
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=98.16 E-value=8.6e-07 Score=104.24 Aligned_cols=73 Identities=26% Similarity=0.438 Sum_probs=68.5
Q ss_pred cchhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCcccc
Q psy1414 222 SELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPLFIH 294 (551)
Q Consensus 222 ~~~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~e~~ 294 (551)
.+++|+++|++++..|+.|+++|+.|+++|+.++.+....+++.+++.||+||-+||++...|+.. ++.+++.
T Consensus 197 ~~~~~revI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~~l~~~~~~~IF~Ni~~I~~~h~~fL~~Le~~~~~~ 270 (1049)
T 3ksy_A 197 GEQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMT 270 (1049)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHCTTTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcc
Confidence 688999999999999999999999999999999999888899999999999999999999999987 7777753
No 37
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.08 E-value=4.3e-06 Score=67.78 Aligned_cols=65 Identities=23% Similarity=0.306 Sum_probs=61.2
Q ss_pred cccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcC
Q psy1414 127 VLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYA 192 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~ 192 (551)
.+|...|+|++|+. ...|++..+...|..++++.+.+|++-|..+|+..+++.|+++||++|+++
T Consensus 6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 68999999999875 467999999999999999999999999999999999999999999999875
No 38
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=98.04 E-value=2.8e-06 Score=95.39 Aligned_cols=71 Identities=18% Similarity=0.313 Sum_probs=55.8
Q ss_pred hcCCCCCcccchhhHHHHHHHhhcchhhhhhhhhcccCccccccCC-Ccccchh------------hhhhHHHHHHHHHH
Q psy1414 12 SRHLIGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDVLQQVHP-TLTARED------------ACLYVESLVLKILA 78 (551)
Q Consensus 12 ~~~P~GSpyR~~is~AILkLqE~G~L~eLK~KWWks~Gkc~c~~~p-sl~asel------------glGlVlsliVaLLE 78 (551)
-++|+|||||+.+|.+|++|+|+|.++++++|||...+.|...... ......+ ++|+++++++.++|
T Consensus 725 ~~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E 804 (823)
T 3kg2_A 725 IATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 804 (823)
T ss_dssp CEEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999776656433211 0111122 28889999999999
Q ss_pred HHhc
Q psy1414 79 MLCS 82 (551)
Q Consensus 79 fL~~ 82 (551)
++|+
T Consensus 805 ~~~~ 808 (823)
T 3kg2_A 805 FCYK 808 (823)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9998
No 39
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=98.01 E-value=7.1e-06 Score=78.57 Aligned_cols=69 Identities=12% Similarity=0.240 Sum_probs=59.4
Q ss_pred chhHH-HHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCcc
Q psy1414 223 ELTYE-EIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPLF 292 (551)
Q Consensus 223 ~~~~~-~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~e 292 (551)
..+|. .+|++++..|+.|+++|+.|+++|..++.. ...+++.+++.||+||-+|+++...|+.. ++.+.
T Consensus 10 ~~~~R~~vi~ELi~TE~~Yv~~L~~l~~~y~~pl~~-~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~ 80 (209)
T 1by1_A 10 NKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQT-SEKLSSANISYLMGNLEEICSFQQMLVQSLEECTK 80 (209)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TSSSSSSGGGTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHc
Confidence 34565 499999999999999999999999999875 45788999999999999999999999886 54443
No 40
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=97.98 E-value=9.1e-06 Score=65.30 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=60.9
Q ss_pred cccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcC
Q psy1414 127 VLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYA 192 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~ 192 (551)
.+|..+|.|++|+. ...|+++.|...++.++|++..+|.+-|...|...+++.|+|+||+.|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 47999999999987 667999999999999999999999999999999999999999999999863
No 41
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=97.97 E-value=8.4e-06 Score=85.70 Aligned_cols=69 Identities=19% Similarity=0.371 Sum_probs=61.9
Q ss_pred chhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCc
Q psy1414 223 ELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPL 291 (551)
Q Consensus 223 ~~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~ 291 (551)
.....+++++++..|+.|+++|+.|+++|.+++.+.+..+++.+++.||+||-+||++...|+.. ++.+
T Consensus 39 ~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~pl~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~ 108 (402)
T 2dfk_A 39 DQMRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQY 108 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 34556799999999999999999999999999988788899999999999999999999999876 5443
No 42
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=97.88 E-value=1.1e-05 Score=86.17 Aligned_cols=70 Identities=16% Similarity=0.314 Sum_probs=63.1
Q ss_pred cchhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCc
Q psy1414 222 SELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPL 291 (551)
Q Consensus 222 ~~~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~ 291 (551)
......++|++++..|+.|+++|+.|+++|.+++.+....+++.+++.||+||-+||++...|+.. ++.+
T Consensus 115 ~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~ 185 (466)
T 2pz1_A 115 KDQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRF 185 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 345667799999999999999999999999999988888899999999999999999999999976 5444
No 43
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=97.86 E-value=2.3e-05 Score=81.49 Aligned_cols=66 Identities=23% Similarity=0.408 Sum_probs=57.9
Q ss_pred hhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCc
Q psy1414 224 LTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPL 291 (551)
Q Consensus 224 ~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~ 291 (551)
..-.+++++++..|+.|+++|+.|+++|++++.. ...+++.+++.||+||-+||++. .|+.. ++.+
T Consensus 23 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~~-~~~l~~~~~~~iF~ni~~I~~~h-~fL~~l~~~~ 89 (385)
T 1txd_A 23 IKRQEVINELFYTERAHVRTLKVLDQVFYQRVSR-EGILSPSELRKIFSNLEDILQLH-IGLNEQMKAV 89 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-HTCSCHHHHHHHHTTHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHH
Confidence 4456799999999999999999999999999976 45779999999999999999999 88865 5543
No 44
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=97.77 E-value=1.9e-05 Score=80.89 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=60.0
Q ss_pred chhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCc
Q psy1414 223 ELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPL 291 (551)
Q Consensus 223 ~~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~ 291 (551)
+....+++++++..|+.|+++|+.|+++|++++... ..+++.+++.||+||-+||++...|+.. ++.+
T Consensus 17 ~~kR~~vi~Eli~TE~~Yv~~L~~l~~~y~~~l~~~-~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~ 85 (346)
T 2z0q_A 17 EIKRQEAIFELSQGEEDLIEDLKLAKKAYHDPMLKL-SIMTEQELNQIFGTLDSLIPLHEELLSQLRDVR 85 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT-TSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence 345677999999999999999999999999999875 5678999999999999999999999876 5444
No 45
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=97.77 E-value=2.3e-05 Score=79.22 Aligned_cols=68 Identities=26% Similarity=0.288 Sum_probs=55.5
Q ss_pred hHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCCh---hhhHHHhhhHHHHHHhhhc-cCCC-CCCcc
Q psy1414 225 TYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKC---KELDQMFANLMDIYEFSLN-FKTP-PDPLF 292 (551)
Q Consensus 225 ~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~---~~~~~~f~ni~~i~~~~~~-~~~~-~d~~e 292 (551)
-=..++++++..|+.|+++|+.|+++|.+++.......++ ++++.||+||-+||++.-+ |+.. ++...
T Consensus 9 kR~~vi~El~~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~~~~iF~ni~~i~~~h~~~fl~~L~~~~~ 81 (311)
T 1nty_A 9 RKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQ 81 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTTTTCHHHHHTTHHHHHHHHHHTHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHC
Confidence 3456899999999999999999999999999875433333 5789999999999999985 8776 54443
No 46
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=97.76 E-value=2.4e-05 Score=82.04 Aligned_cols=66 Identities=15% Similarity=0.269 Sum_probs=58.8
Q ss_pred hhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCcc
Q psy1414 224 LTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPLF 292 (551)
Q Consensus 224 ~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~e 292 (551)
.--..+|++++..|+.|+++|+.|+++|.+++.+ .+++++++.||+||-+||++...|+.. ++.++
T Consensus 24 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~~---~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~ 90 (406)
T 2vrw_B 24 DKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR---FLKPQDMETIFVNIEELFSVHTHFLKELKDALA 90 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT---TSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc
Confidence 4456699999999999999999999999999864 689999999999999999999999987 65554
No 47
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=97.74 E-value=1.9e-05 Score=81.37 Aligned_cols=69 Identities=23% Similarity=0.390 Sum_probs=60.1
Q ss_pred chhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCcc
Q psy1414 223 ELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPLF 292 (551)
Q Consensus 223 ~~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~e 292 (551)
+....+++++++..|+.|+++|+.|+++|++++.. ...+++.+++.||+||-+||++...|+.. ++..+
T Consensus 19 ~~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~~-~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~ 88 (368)
T 1xcg_A 19 EIDRQEVINELFVTEASHLRTLRVLDLIFYQRMKK-ENLMPREELARLFPNLPELIEIHNSWCEAMKKLRE 88 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh
Confidence 34556799999999999999999999999999886 45789999999999999999999999876 54443
No 48
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=97.73 E-value=2.4e-05 Score=81.11 Aligned_cols=69 Identities=23% Similarity=0.418 Sum_probs=60.3
Q ss_pred HHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCccccc
Q psy1414 226 YEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPLFIHE 295 (551)
Q Consensus 226 ~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~e~~p 295 (551)
-.++|++++..|+.|+++|+.|+++|..++... ..+++.+++.||+||-+||++...|+.. ++.+...|
T Consensus 12 r~~vi~Eli~TE~~Yv~~L~~l~~~y~~pl~~~-~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~ 81 (377)
T 1foe_A 12 LRKVICELLETERTYVKDLNCLMERYLKPLQKE-TFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRLVP 81 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTS-SSSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456999999999999999999999999999764 5679999999999999999999999887 66555433
No 49
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=97.71 E-value=2.8e-05 Score=80.24 Aligned_cols=65 Identities=22% Similarity=0.397 Sum_probs=58.3
Q ss_pred cchhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC
Q psy1414 222 SELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP 287 (551)
Q Consensus 222 ~~~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~ 287 (551)
.+..-.+++++++..|+.|+++|+.|+++|.+++... ..+++.+++.||+||-+||++...|+..
T Consensus 24 ~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~-~~l~~~~~~~iF~ni~~I~~~h~~fl~~ 88 (377)
T 3p6a_A 24 SQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-LFFPLEELQNIFPSLDELIEVHSLFLDR 88 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH-TSSCHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3445667999999999999999999999999999764 5679999999999999999999999875
No 50
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=97.68 E-value=2.7e-05 Score=81.74 Aligned_cols=70 Identities=23% Similarity=0.383 Sum_probs=61.2
Q ss_pred cchhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCcc
Q psy1414 222 SELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPLF 292 (551)
Q Consensus 222 ~~~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~e 292 (551)
.+....+++++++..|+.|+++|+.|+++|++++.. ...+++.+++.||+||.+||++...|+.. ++.++
T Consensus 60 ~e~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~-~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~ 130 (418)
T 3t06_A 60 REIDRQEVINELFVTEASHLRTLRVLDLIFYQRMKK-ENLMPREELARLFPNLPELIEIHNSWCEAMKKLRE 130 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHh
Confidence 345567799999999999999999999999999876 56789999999999999999999999876 55444
No 51
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=97.68 E-value=3.3e-05 Score=76.54 Aligned_cols=62 Identities=16% Similarity=0.360 Sum_probs=55.4
Q ss_pred hHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC
Q psy1414 225 TYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP 287 (551)
Q Consensus 225 ~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~ 287 (551)
.-.++|++++..|+.|+++|+.|+++|.+++... ..+++.+++.||+||-+|+++...|+..
T Consensus 82 kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~-~~l~~~~~~~iF~ni~~i~~~~~~fl~~ 143 (283)
T 3jv3_A 82 KRQGYIHELIVTEENYVNDLQLVTEIFQKPLTES-ELLTEKEVAMIFVNWKELIMCNIKLLKA 143 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHTT-CSSCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccc-CCCCHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456999999999999999999999999998764 4679999999999999999999888764
No 52
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=97.55 E-value=6e-05 Score=82.45 Aligned_cols=64 Identities=20% Similarity=0.394 Sum_probs=57.6
Q ss_pred chhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC
Q psy1414 223 ELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP 287 (551)
Q Consensus 223 ~~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~ 287 (551)
+.--.++|++++..|+.|+++|+.|+++|.+++.. ...+++.+++.||+||-+||++...|+..
T Consensus 178 e~kRq~vi~ELi~TE~~YV~~L~~l~~~y~~pl~~-~~~l~~~~~~~IF~nie~I~~~h~~fL~~ 241 (536)
T 3odw_A 178 QVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAE-CLFFPLEELQNIFPSLDELIEVHSLFLDR 241 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTSSCHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34456799999999999999999999999999976 45789999999999999999999999875
No 53
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=97.54 E-value=3.7e-05 Score=79.37 Aligned_cols=69 Identities=14% Similarity=0.253 Sum_probs=57.4
Q ss_pred hhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCC--CCCh---hhhHHHhhhHHHHHHhhh-ccCCC-CCCcc
Q psy1414 224 LTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIP--PGKC---KELDQMFANLMDIYEFSL-NFKTP-PDPLF 292 (551)
Q Consensus 224 ~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~--~~~~---~~~~~~f~ni~~i~~~~~-~~~~~-~d~~e 292 (551)
.-...+|++++..|+.|+++|+.|+++|+.++..... ..++ ++++.||+||-+||++.- .|+.. ++.++
T Consensus 10 ~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~pl~~~~~~~~~p~~~~~~~~~iF~ni~~I~~~h~~~fl~~Le~~~~ 85 (353)
T 1kz7_A 10 ILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCID 85 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGCTTTTTTSCHHHHHTHHHHHTTHHHHHHHHHHTHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChhhhhhHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 3456799999999999999999999999999876543 4554 589999999999999985 78776 66654
No 54
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=97.53 E-value=4.6e-05 Score=80.27 Aligned_cols=70 Identities=19% Similarity=0.177 Sum_probs=59.6
Q ss_pred chhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhh--------CCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCcc
Q psy1414 223 ELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKL--------IPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPLF 292 (551)
Q Consensus 223 ~~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~--------~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~e 292 (551)
+.--..+|++++..|+.|+++|+.|+++|..++.+. .+.+++.+++.||+||-+||++...|+.. ++.++
T Consensus 20 ~~kr~~ii~ELl~TE~~Yv~~L~~l~~~f~~pl~~~l~~~~~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~ 98 (434)
T 3mpx_A 20 QSRALVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGLSELPAIHDLHQGILEELEERLS 98 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 345566899999999999999999999999998653 46778999999999999999999999887 65543
No 55
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=97.38 E-value=0.00016 Score=79.70 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=58.0
Q ss_pred hHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCcc
Q psy1414 225 TYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPLF 292 (551)
Q Consensus 225 ~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~e 292 (551)
--.+++++++..|+.|+++|+.|+++|++++.+ .+++++++.||+||-+||++.-.|+.. ++.++
T Consensus 197 kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~L~~---~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~ 262 (587)
T 3ky9_A 197 KRCCCLREIQQTEEKYTDTLGSIQQHFLKPLQR---FLKPQDIEIIFINIEDLLRVHTHFLKEMKEALG 262 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHT---TSCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHh
Confidence 345699999999999999999999999999985 789999999999999999999999986 55443
No 56
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=97.29 E-value=0.00021 Score=73.75 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=52.8
Q ss_pred HHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCC-CChhhhHHHhhhHHHHHHhhhc-cCCC-CCC
Q psy1414 227 EEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPP-GKCKELDQMFANLMDIYEFSLN-FKTP-PDP 290 (551)
Q Consensus 227 ~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~-~~~~~~~~~f~ni~~i~~~~~~-~~~~-~d~ 290 (551)
..+|++++..|+.|+++|+.|+++|.+++.....+ .-..+++.||+||-+||++... |+.. ++.
T Consensus 14 ~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~~~p~~l~~~~~~iF~ni~~I~~~h~~~fl~~L~~~ 80 (354)
T 2rgn_B 14 MYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQIYEWHRDYFLQELQRC 80 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCCCSSSGGGHHHHHTTHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999876422 1235689999999999999998 7765 433
No 57
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=97.20 E-value=5.3e-05 Score=81.02 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred hhHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhhHHHhhhHHHHHHhhhccCCC-CCCcc
Q psy1414 224 LTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNFKTP-PDPLF 292 (551)
Q Consensus 224 ~~~~~~v~~~~~~e~~~~r~l~~i~~vf~~~~~~~~~~~~~~~~~~~f~ni~~i~~~~~~~~~~-~d~~e 292 (551)
..-.+++++++..|+.|+++|+.|+++|.+++.. ...+++.+++.||+||-+||++...|+.. ++.+.
T Consensus 26 ~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~-~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~ 94 (510)
T 3jzy_A 26 RKRQGYIHELIQTEERYMADLQLVVEVFQKRMAE-SGFLTEGEMALIFVNWKELIMSNTKLLKALRVRKK 94 (510)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHh
Confidence 3445689999999999999999999999999865 45678899999999999999999999988 76554
No 58
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.04 E-value=0.00089 Score=56.95 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=61.5
Q ss_pred CcccccHhHHHHhhhcC-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 124 SCLVLPVEKIHYLLSKD-VLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~-~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
..+.+|.++|.|++|+. .-..||+..|..-++-+.|.+...+-+-|...|...+++.|+++||..|++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 36789999999999876 335799999999999999999999999999999999999999999999996
No 59
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=96.78 E-value=0.002 Score=52.84 Aligned_cols=66 Identities=8% Similarity=0.083 Sum_probs=57.8
Q ss_pred ccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 126 LVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 126 L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
..+|.+.|.|++|+-.-..+|+..|..-+.-.++-+...|-.-|...|+..+++.|+++||..|++
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 368999999999854335699999999999999988888888899999999999999999999875
No 60
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=96.65 E-value=0.0022 Score=59.70 Aligned_cols=64 Identities=9% Similarity=0.144 Sum_probs=60.3
Q ss_pred cccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhh
Q psy1414 127 VLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAM 190 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai 190 (551)
.+|..-|.|++|+..-..|||..+...++.+++.+..+|..-|.++|+..+++.|+++||..|+
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 4799999999998755689999999999999999999999999999999999999999999998
No 61
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=96.60 E-value=0.0036 Score=52.38 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=60.8
Q ss_pred cccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCc
Q psy1414 127 VLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYAD 193 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D 193 (551)
-+|..-|.|+.+++. ..||+..+.--++.++||...+|++-|..+++..+++.||++||..|++..
T Consensus 10 ~ip~~~I~Riar~~G-v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 10 GITKPAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp SSCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 379999999998763 479999999999999999999999999999999999999999999999865
No 62
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.26 E-value=0.0067 Score=52.66 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=60.5
Q ss_pred cccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCc
Q psy1414 127 VLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYAD 193 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D 193 (551)
-+|..-|.|++++.. ..||+..+.--++.++||...+|++-|..+++..+++.||++||..|++..
T Consensus 28 ~ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 28 GITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GSCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 479999999998753 479999999999999999999999999999999999999999999998754
No 63
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=96.18 E-value=0.0049 Score=55.66 Aligned_cols=69 Identities=14% Similarity=0.073 Sum_probs=59.4
Q ss_pred cccccHhHHHHhhhc-CccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCc
Q psy1414 125 CLVLPVEKIHYLLSK-DVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYAD 193 (551)
Q Consensus 125 ~L~FPV~ri~r~Lk~-~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D 193 (551)
.+.||.++|.|++|+ .--..+|+..|...++-..|-+...|-.-|...|+..+++.|+++||..|+...
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 578999999999984 444679999999999999999999999999999999999999999999998864
No 64
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.11 E-value=0.0087 Score=48.69 Aligned_cols=65 Identities=8% Similarity=0.151 Sum_probs=58.9
Q ss_pred ccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 126 LVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 126 L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
-.+|+.-|.+..++ .-..|++..+..-||.-+||-..+|.+-|.+.++..|++.+|.+||..|++
T Consensus 5 s~lp~~~v~~iaes-~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAES-IGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHH-TTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 46899999999864 334699999999999999999999999999999999999999999999875
No 65
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=94.88 E-value=0.013 Score=51.52 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=60.1
Q ss_pred cccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHH
Q psy1414 125 CLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVL 196 (551)
Q Consensus 125 ~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL 196 (551)
.+.+|-+-|.|+++.+ -..||+..+..-+..+++....+|.+-|..+|+..+++.|++.||.+|++....+
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 4578999999999765 4579999999999999999999999999999999999999999999999876543
No 66
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=94.73 E-value=0.043 Score=44.31 Aligned_cols=61 Identities=18% Similarity=0.154 Sum_probs=54.7
Q ss_pred hHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcC
Q psy1414 131 EKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYA 192 (551)
Q Consensus 131 ~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~ 192 (551)
--|+++|++ .-..|++..++.-|.-.++-.+.+||+-|..+|+.-+++.|+..||++||+.
T Consensus 5 ~~i~~iLk~-~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKE-LNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHH-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 457888875 3347999999999999999999999999999999999999999999999974
No 67
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.056 Score=45.99 Aligned_cols=77 Identities=12% Similarity=0.044 Sum_probs=63.3
Q ss_pred CcccccHhHHHHhh-hcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcC
Q psy1414 124 SCLVLPVEKIHYLL-SKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQ 202 (551)
Q Consensus 124 a~L~FPV~ri~r~L-k~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~ 202 (551)
+.+.|-|++|-.-. +++ +-.++..+..-|+.+++-.+.+|.+=+..+|+.-+|+.|++.||.++++.++.|.+++.+
T Consensus 12 aal~~~V~ki~~e~~~~~--g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~~ 89 (90)
T 3v9r_A 12 ARLWIRVEERLQQVLSSE--DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVTQ 89 (90)
T ss_dssp HHHHHHHHHHHHHHSCSS--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhc--CceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhhc
Confidence 55788888875443 222 346888888888888888888888888999999999999999999999999999998864
No 68
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=93.84 E-value=0.02 Score=56.40 Aligned_cols=35 Identities=49% Similarity=1.108 Sum_probs=33.0
Q ss_pred cCCCCCcccchhhHHHHHHHhhcchhhhhhhhhcc
Q psy1414 13 RHLIGSPWRDRISLAILELQEKGTIQMLYDKWWKN 47 (551)
Q Consensus 13 ~~P~GSpyR~~is~AILkLqE~G~L~eLK~KWWks 47 (551)
++|+|+|+++.+|.+|.+|+++|.++.+.+||+..
T Consensus 254 a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~ 288 (312)
T 1yae_A 254 GTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRG 288 (312)
T ss_dssp EEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCC
T ss_pred EEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCC
Confidence 57899999999999999999999999999999966
No 69
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=93.71 E-value=0.035 Score=49.06 Aligned_cols=78 Identities=9% Similarity=0.113 Sum_probs=64.4
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcC
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQ 202 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~ 202 (551)
+.+.|.|+||=+---.. .+-.++..+..-|+.+++..+.+|.+=+...|+.-+++.|++.||.++++.++.|.++++.
T Consensus 27 aal~y~V~rIvke~gae-r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~~ 104 (113)
T 4dra_A 27 AAVHYTVGCLCEEVALD-KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITD 104 (113)
T ss_dssp HHHHHHHHHHHHHHHHH-HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 66899999886432111 1234888888889999998889999999999999999999999999999999999988763
No 70
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=93.35 E-value=0.1 Score=49.61 Aligned_cols=68 Identities=10% Similarity=0.119 Sum_probs=59.5
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
..+.+|.+.|.|++|+..-..||+..+...|+-.++-+...|-..|...|+..+++.|+++||..|+.
T Consensus 12 eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~ 79 (179)
T 1jfi_B 12 DDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE 79 (179)
T ss_dssp CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 46889999999999864335799999999999888888888888888888899999999999999987
No 71
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=92.85 E-value=0.13 Score=46.25 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=57.7
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
....|.+ .|++.|++-.-...|++.|.--|...++.+...|-.-|+.-|+.++++.||+++||.|++
T Consensus 34 ~~esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 34 RKESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCCCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3456765 799999764334589999999999999999999999999999999999999999999985
No 72
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=92.85 E-value=0.079 Score=46.42 Aligned_cols=77 Identities=5% Similarity=0.053 Sum_probs=64.6
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhc
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFY 201 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~ 201 (551)
+.+.|-|+||-+---. ....|++..+..-|+-+++-.+.+|.+=+..+|+.-+++.|++.||.+|++.++.|.+.+.
T Consensus 19 aal~~~V~rI~~~~g~-~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 19 AAVHYTTGCLCQDVAE-DKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 5588888887654311 1235899999999999998889999999999999999999999999999999999987765
No 73
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=91.92 E-value=0.16 Score=45.50 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=56.5
Q ss_pred cccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 125 CLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 125 ~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
...|. ..|++.|++-.-..+|++.|.--|...++.+...|-.-|+.-++-++++.||+++||.|++
T Consensus 32 ~esy~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 32 KESYA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp CCCSH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred cchHH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 34564 5788899764434589999999999999999999999999999999999999999999985
No 74
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=90.06 E-value=0.43 Score=39.85 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=45.7
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 142 LQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 142 ~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
...|++++|..-|--+.|....++.|-|..-|...|++.|.|+||++|.+
T Consensus 24 ~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 24 VDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 35799999999999999999999999998889888999999999999864
No 75
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=89.33 E-value=0.39 Score=44.57 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=58.6
Q ss_pred HHHhcccccCcccccHhHHHHhhhcCc------cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhh
Q psy1414 115 AIEKSKKKISCLVLPVEKIHYLLSKDV------LQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKV 188 (551)
Q Consensus 115 al~k~~~k~a~L~FPV~ri~r~Lk~~~------~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~ 188 (551)
.|.++-+. ..|.+|.--+.|++++-. ...|+.++|..-|.-+.|....++.|-|..-|...++..|+|+||++
T Consensus 66 EIR~yQkS-teLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqL 144 (156)
T 3r45_A 66 EIRKLQKS-THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQL 144 (156)
T ss_dssp ----------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHH
T ss_pred HHHHhccc-cccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHH
Confidence 34444444 678888888888887532 25799999999999999999999999998888888999999999999
Q ss_pred hhc
Q psy1414 189 AMY 191 (551)
Q Consensus 189 Ai~ 191 (551)
|.+
T Consensus 145 Arr 147 (156)
T 3r45_A 145 ARR 147 (156)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 76
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=89.28 E-value=0.28 Score=44.85 Aligned_cols=77 Identities=5% Similarity=0.069 Sum_probs=64.5
Q ss_pred CcccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhc
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFY 201 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~ 201 (551)
+.+.|-|++|-.-.-. .....++..+..-|+.+++..+.+|.+=+..+|+.-+++.|++.||.++++.++.|...+.
T Consensus 19 aAl~y~VgkIvee~~~-~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~ 95 (140)
T 3vh5_A 19 AAVHYTTGALAQDVAE-DKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (140)
T ss_dssp HHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHH
Confidence 6688999988653311 1234688888888999999888899999999999999999999999999999999988875
No 77
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=89.04 E-value=0.42 Score=41.34 Aligned_cols=75 Identities=11% Similarity=0.146 Sum_probs=54.6
Q ss_pred HHhcccccCcccccHhHHHHhhhcCc-------cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhh
Q psy1414 116 IEKSKKKISCLVLPVEKIHYLLSKDV-------LQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKV 188 (551)
Q Consensus 116 l~k~~~k~a~L~FPV~ri~r~Lk~~~-------~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~ 188 (551)
+.+.-+. ..|.+|.--+.|+.++-. ...|+.++|..-|.-+.|.....+.|-|..-|...++..|.|+||++
T Consensus 17 Ir~yQks-t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqL 95 (100)
T 2yfv_A 17 IRKYQRS-TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQL 95 (100)
T ss_dssp ------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHhhccc-chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHH
Confidence 3344333 678888888888877532 15799999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy1414 189 AMY 191 (551)
Q Consensus 189 Ai~ 191 (551)
|.+
T Consensus 96 a~r 98 (100)
T 2yfv_A 96 ARR 98 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 78
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=88.72 E-value=0.63 Score=38.39 Aligned_cols=65 Identities=9% Similarity=0.113 Sum_probs=51.8
Q ss_pred cccHhHHHHhhhcC----ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 127 VLPVEKIHYLLSKD----VLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~----~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
.+|.--+.|++|+- ....|++++|..-|.-+.|....++.|-|..-|...|++.|+|+||++|.+
T Consensus 3 li~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 34444445555432 124799999999999999999999999999999999999999999999964
No 79
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=88.37 E-value=0.48 Score=45.27 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=53.3
Q ss_pred hHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 131 EKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 131 ~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
..|++.|++-.-...++..|..++...+..+...|-.-|..-++.++++.||+++|+.|++
T Consensus 7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 4688899865555689999999999999999999998899999999999999999999986
No 80
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=88.33 E-value=0.49 Score=43.25 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=57.6
Q ss_pred HHHhcccccCcccccHhHHHHhhhcCc------cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhh
Q psy1414 115 AIEKSKKKISCLVLPVEKIHYLLSKDV------LQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKV 188 (551)
Q Consensus 115 al~k~~~k~a~L~FPV~ri~r~Lk~~~------~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~ 188 (551)
.|.++-+. ..|.+|.--+.|++++-. ...|+.++|..-|.-+.|....++.|-|..-|...++..|+|.||++
T Consensus 50 EIR~yQks-t~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqL 128 (140)
T 3nqu_A 50 EIRKLQKS-THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQL 128 (140)
T ss_dssp ----------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHhccc-cccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHH
Confidence 33444333 678887777777776532 35799999999999999999999999998888888999999999999
Q ss_pred hhc
Q psy1414 189 AMY 191 (551)
Q Consensus 189 Ai~ 191 (551)
|.+
T Consensus 129 Arr 131 (140)
T 3nqu_A 129 ARR 131 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 81
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=87.03 E-value=1.1 Score=40.77 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=62.2
Q ss_pred HHHhcccccCcccccHhHHHHhhhcCc----cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhh
Q psy1414 115 AIEKSKKKISCLVLPVEKIHYLLSKDV----LQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAM 190 (551)
Q Consensus 115 al~k~~~k~a~L~FPV~ri~r~Lk~~~----~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai 190 (551)
.+.+.-+. ..|.+|.--+.|++++-. ...|+.++|..-|.-+.|....++.|-|..-|...++..|.|.||++|.
T Consensus 51 EIr~yQks-t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ 129 (136)
T 1tzy_C 51 EIRRYQKS-TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
T ss_dssp HHHHHHHC-CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred HHHHhhcc-hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHH
Confidence 34444333 678888888888886531 2479999999999999999999999999999999999999999999986
Q ss_pred c
Q psy1414 191 Y 191 (551)
Q Consensus 191 ~ 191 (551)
+
T Consensus 130 r 130 (136)
T 1tzy_C 130 R 130 (136)
T ss_dssp H
T ss_pred H
Confidence 4
No 82
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=83.93 E-value=1.4 Score=39.41 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=46.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 143 QYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 143 ~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
..|||+.+-.-+..+|+-...+|+.-|..+++..++|.||..||..|++
T Consensus 62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alk 110 (121)
T 2ly8_A 62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 110 (121)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999998875
No 83
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=83.19 E-value=0.48 Score=43.96 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=32.5
Q ss_pred hcCCCCCc-ccchhhHHHHHHHhhcchhhhhhhhhcccC
Q psy1414 12 SRHLIGSP-WRDRISLAILELQEKGTIQMLYDKWWKNTG 49 (551)
Q Consensus 12 ~~~P~GSp-yR~~is~AILkLqE~G~L~eLK~KWWks~G 49 (551)
-++++++| +++.++.+|.++.++|.++.+.+||+....
T Consensus 182 ~~~~k~~~~l~~~ln~~l~~l~~~G~~~~i~~k~~~~~~ 220 (232)
T 3i6v_A 182 MGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDA 220 (232)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHCTTS
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHCChHHHHHHHHcCCCC
Confidence 34567765 899999999999999999999999997643
No 84
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=81.21 E-value=1.9 Score=36.34 Aligned_cols=64 Identities=14% Similarity=0.235 Sum_probs=53.1
Q ss_pred cccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccchhhhhhc
Q psy1414 127 VLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRH-VEVAQQDIKVAMY 191 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~-~rItp~hi~~Ai~ 191 (551)
.||=..|.++++ ...+..++..+.+-++++---+..||.|.|-........ .-|.|.||+-|.+
T Consensus 16 ~f~k~~vKrl~~-~~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQ-SITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHH-HHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHH-HHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 677788888884 566789999999999999999999999999877766543 4799999998864
No 85
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=76.82 E-value=1.1 Score=41.48 Aligned_cols=39 Identities=18% Similarity=0.449 Sum_probs=33.6
Q ss_pred hcCCCCCc-ccchhhHHHHHHHhhcchhhhhhhhhcccCc
Q psy1414 12 SRHLIGSP-WRDRISLAILELQEKGTIQMLYDKWWKNTGD 50 (551)
Q Consensus 12 ~~~P~GSp-yR~~is~AILkLqE~G~L~eLK~KWWks~Gk 50 (551)
-++++++| .++.++.+|.++.++|.++.+.+||+.....
T Consensus 193 ~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~ 232 (245)
T 3k4u_A 193 WAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKW 232 (245)
T ss_dssp CEECTTCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTCCSG
T ss_pred EEEcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcCcccc
Confidence 35677777 8999999999999999999999999976543
No 86
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=76.54 E-value=2.4 Score=37.91 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=54.8
Q ss_pred ccccccCCCcccchhhhhhHHHHHHHHHHHHhcC-------CCCCCcc--hHHHHHHhhCCCCchhhhhHHHHHHHHhcc
Q psy1414 50 DVLQQVHPTLTAREDACLYVESLVLKILAMLCSK-------PSPHTTS--DVEERVRRQFPTPIDKWAMHEAKEAIEKSK 120 (551)
Q Consensus 50 kc~c~~~psl~aselglGlVlsliVaLLEfL~~~-------~~pktv~--dvEerv~~tFp~pidkWal~~a~~al~k~~ 120 (551)
++..|+||....+..+.+.+.+++--++|-+-.. ..++|+. ++.-.|+.++|..+.++|+.++.+|+.|+.
T Consensus 41 KVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvseGtkAV~ky~ 120 (123)
T 2nqb_D 41 TVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT 120 (123)
T ss_dssp HHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHHHHHHHHHHHHHHHhccc
Confidence 4566788887788888888888877777766321 1355554 667889999999999999999999999864
No 87
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=76.22 E-value=2.4 Score=38.03 Aligned_cols=71 Identities=27% Similarity=0.382 Sum_probs=55.4
Q ss_pred ccccccCCCcccchhhhhhHHHHHHHHHHHHhcC-------CCCCCcc--hHHHHHHhhCCCCchhhhhHHHHHHHHhcc
Q psy1414 50 DVLQQVHPTLTAREDACLYVESLVLKILAMLCSK-------PSPHTTS--DVEERVRRQFPTPIDKWAMHEAKEAIEKSK 120 (551)
Q Consensus 50 kc~c~~~psl~aselglGlVlsliVaLLEfL~~~-------~~pktv~--dvEerv~~tFp~pidkWal~~a~~al~k~~ 120 (551)
++..++||....+..+.+.+.+++--++|-+-.. ..++|+. ++.-.|+.++|..+.++|+.++.+|+.|+.
T Consensus 44 KVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvseGtkAV~ky~ 123 (126)
T 1tzy_B 44 KVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT 123 (126)
T ss_dssp HHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHHhccc
Confidence 4566788887888888888888887777776421 1355554 666889999999999999999999999874
No 88
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=75.84 E-value=2.9 Score=41.17 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=50.2
Q ss_pred HhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcC
Q psy1414 135 YLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYA 192 (551)
Q Consensus 135 r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~ 192 (551)
|+.++ .-..|||+.+..-+..||+-...+|+.-|..++...+++.||+.||..|+..
T Consensus 169 RlaRr-gGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 169 EDGDK-GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 225 (235)
T ss_dssp TTSCC-TTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred HHhhc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 44532 3347999999999999999999999999999999999999999999999864
No 89
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=63.85 E-value=14 Score=30.79 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=51.7
Q ss_pred CcccccHhHHHHhhhcCccc---cccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhh
Q psy1414 124 SCLVLPVEKIHYLLSKDVLQ---YKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKV 188 (551)
Q Consensus 124 a~L~FPV~ri~r~Lk~~~~~---~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~ 188 (551)
++..||-.-|+++|+ ..+. -||+..|-.-++..++-++.|..--|...|+......|...|+..
T Consensus 9 ~~~~i~~~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 9 AGSGFRKELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp --CCCCHHHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CCCCCCHHHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 577999999999998 4443 399999998899999999999888888888876666788888874
No 90
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=61.83 E-value=5.5 Score=34.72 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcC
Q psy1414 162 SADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQ 202 (551)
Q Consensus 162 taeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~ 202 (551)
+.++|+.|-+.|+..++..|+|+|+-+|+-.+++...+++.
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~~ 46 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEA 46 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHHH
Confidence 35789999999999999999999999999988877777764
No 91
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=57.16 E-value=17 Score=30.12 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=52.7
Q ss_pred cccccHhHHHHhhhcCccc---cccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhh
Q psy1414 125 CLVLPVEKIHYLLSKDVLQ---YKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKV 188 (551)
Q Consensus 125 ~L~FPV~ri~r~Lk~~~~~---~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~ 188 (551)
+-.||-.-|+++|+. .+. -||+..|..-++..|+-++.|.+--|...|+.-....|..+|+..
T Consensus 6 ~~~~~~~lI~ril~~-~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 6 EGGFRKETVERLLRL-HFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp -CCCCHHHHHHHHHH-HCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCCHHHHHHHHHH-HhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 458999999999986 443 399999998899999999999999998888877777888888874
No 92
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=55.64 E-value=6.4 Score=36.79 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=31.0
Q ss_pred cCCCCCc-ccchhhHHHHHHHhhcchhhhhhhhhcc
Q psy1414 13 RHLIGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 47 (551)
Q Consensus 13 ~~P~GSp-yR~~is~AILkLqE~G~L~eLK~KWWks 47 (551)
++++++| .++.++.+|.++.++|.++.+.+||...
T Consensus 214 ~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 249 (268)
T 3hv1_A 214 GARKVDKTLIKKINQGFETLYKNGEFQKISNKWFGE 249 (268)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred EEcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCC
Confidence 4567775 8999999999999999999999999954
No 93
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=51.95 E-value=8.4 Score=33.65 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCcccccchhhhhhcCch--HHHhhhc
Q psy1414 163 ADILKLAGNYVKNIRHVEVAQQDIKVAMYADK--VLMDMFY 201 (551)
Q Consensus 163 aeILELAgn~a~~~k~~rItp~hi~~Ai~~D~--eL~~Lf~ 201 (551)
.++|+.|-+.|+..++..|+|+|+-+|+-.++ ....+++
T Consensus 11 ~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (148)
T 1khy_A 11 QLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLT 51 (148)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHH
Confidence 57899999999999999999999999997765 3455554
No 94
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=49.85 E-value=6 Score=35.04 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCCcccccchhhhhhcCch--HHHhhhc
Q psy1414 162 SADILKLAGNYVKNIRHVEVAQQDIKVAMYADK--VLMDMFY 201 (551)
Q Consensus 162 taeILELAgn~a~~~k~~rItp~hi~~Ai~~D~--eL~~Lf~ 201 (551)
+.++|+.|-+.|+..++..|+|+|+-+|+-.++ ....++.
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 53 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLS 53 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHH
Confidence 367899999999999999999999999998764 3455655
No 95
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=47.60 E-value=7.2 Score=34.48 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhcCCcccccchhhhhhcCc--hHHHhhhcC
Q psy1414 162 SADILKLAGNYVKNIRHVEVAQQDIKVAMYAD--KVLMDMFYQ 202 (551)
Q Consensus 162 taeILELAgn~a~~~k~~rItp~hi~~Ai~~D--~eL~~Lf~~ 202 (551)
+.++|+.|-+.|+..++..|+|+|+-+|+-.+ .....+++.
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~ 53 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALES 53 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHH
Confidence 35789999999999999999999999999765 345666653
No 96
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=47.01 E-value=6.8 Score=36.15 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=32.5
Q ss_pred hhcCCCCCc-ccchhhHHHHHHHhhcchhhhhhhhhccc
Q psy1414 11 VSRHLIGSP-WRDRISLAILELQEKGTIQMLYDKWWKNT 48 (551)
Q Consensus 11 ~~~~P~GSp-yR~~is~AILkLqE~G~L~eLK~KWWks~ 48 (551)
.-++++++| .++.++.+|.++.++|.++++.+||....
T Consensus 217 ~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 255 (268)
T 3qax_A 217 GLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTKKWQLSE 255 (268)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCCc
Confidence 345677776 79999999999999999999999998553
No 97
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=45.35 E-value=8.6 Score=33.74 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCcccccchhhhhhcCchH--HHhhhcC
Q psy1414 163 ADILKLAGNYVKNIRHVEVAQQDIKVAMYADKV--LMDMFYQ 202 (551)
Q Consensus 163 aeILELAgn~a~~~k~~rItp~hi~~Ai~~D~e--L~~Lf~~ 202 (551)
.++|+.|-+.|+..++..|+|+|+-+|+-.+++ ...+++.
T Consensus 11 ~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~ 52 (150)
T 2y1q_A 11 QKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQA 52 (150)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHH
Confidence 578999999999999999999999999976654 5666653
No 98
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=44.97 E-value=7.6 Score=36.75 Aligned_cols=35 Identities=26% Similarity=0.540 Sum_probs=31.3
Q ss_pred cCCCCCc-ccchhhHHHHHHHhhcchhhhhhhhhcc
Q psy1414 13 RHLIGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 47 (551)
Q Consensus 13 ~~P~GSp-yR~~is~AILkLqE~G~L~eLK~KWWks 47 (551)
++++|+| .++.++.+|.++.++|.+..+.+||...
T Consensus 214 ~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 249 (287)
T 2vha_A 214 MLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKN 249 (287)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCC
Confidence 4677776 8999999999999999999999999954
No 99
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=43.71 E-value=6.8 Score=37.00 Aligned_cols=34 Identities=12% Similarity=0.312 Sum_probs=30.2
Q ss_pred cCCCCCc-ccchhhHHHHHHHhhcchhhhhhhhhc
Q psy1414 13 RHLIGSP-WRDRISLAILELQEKGTIQMLYDKWWK 46 (551)
Q Consensus 13 ~~P~GSp-yR~~is~AILkLqE~G~L~eLK~KWWk 46 (551)
++++++| +++.++.+|.++.++|.+..+.+||..
T Consensus 212 ~~~k~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 212 VMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred EEcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCC
Confidence 4556666 899999999999999999999999986
No 100
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=43.00 E-value=44 Score=27.28 Aligned_cols=66 Identities=11% Similarity=0.207 Sum_probs=56.3
Q ss_pred ccccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhc
Q psy1414 126 LVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMY 191 (551)
Q Consensus 126 L~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~ 191 (551)
-.++-.+++.++++=.-...++..+--.|.-+-+=+..+|++.|...||.-+...+.++|+++.+.
T Consensus 4 ~vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp CSSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 356778889999764445688999999999999999999999999999988888899999997654
No 101
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=41.01 E-value=14 Score=34.14 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCcccccchhhhhhcCch--HHHhhhcC
Q psy1414 163 ADILKLAGNYVKNIRHVEVAQQDIKVAMYADK--VLMDMFYQ 202 (551)
Q Consensus 163 aeILELAgn~a~~~k~~rItp~hi~~Ai~~D~--eL~~Lf~~ 202 (551)
.++|+.|.+.|+..++..|+|+|+-+|+-.++ ....+++.
T Consensus 30 ~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~ 71 (171)
T 3zri_A 30 KLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQ 71 (171)
T ss_dssp HHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHH
Confidence 56899999999999999999999999998764 35556653
No 102
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=36.11 E-value=16 Score=32.28 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhcCCcccccchhhhhhcCchH--HHhhhcC
Q psy1414 162 SADILKLAGNYVKNIRHVEVAQQDIKVAMYADKV--LMDMFYQ 202 (551)
Q Consensus 162 taeILELAgn~a~~~k~~rItp~hi~~Ai~~D~e--L~~Lf~~ 202 (551)
+..+|+.|...|+..+...|+++|+-+|+-.|++ ...+++.
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~ 128 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNY 128 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHH
Confidence 3568899999999999999999999999986653 5566663
No 103
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=35.99 E-value=19 Score=31.72 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCCcccccchhhhhhcCch--HHHhhhcC
Q psy1414 163 ADILKLAGNYVKNIRHVEVAQQDIKVAMYADK--VLMDMFYQ 202 (551)
Q Consensus 163 aeILELAgn~a~~~k~~rItp~hi~~Ai~~D~--eL~~Lf~~ 202 (551)
..+|+.|...|+..+...|+++|+-+|+-.|+ ....+++.
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~ 128 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVK 128 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHH
Confidence 57889999999999999999999999998654 45666663
No 104
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=35.94 E-value=11 Score=35.92 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=30.5
Q ss_pred cCCCCCc-ccchhhHHHHHHHhhcchhhhhhhhhcc
Q psy1414 13 RHLIGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 47 (551)
Q Consensus 13 ~~P~GSp-yR~~is~AILkLqE~G~L~eLK~KWWks 47 (551)
.+++++| .++.++.+|.++.++|.++.+.+||...
T Consensus 231 ~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 266 (292)
T 1xt8_A 231 AVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKA 266 (292)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTTTHHHHHHHHHTGG
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcCC
Confidence 4456666 8999999999999999999999999854
No 105
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=30.70 E-value=15 Score=35.20 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=30.1
Q ss_pred cCCCCCc-ccchhhHHHHHHHhhcchhhhhhhhhcc
Q psy1414 13 RHLIGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 47 (551)
Q Consensus 13 ~~P~GSp-yR~~is~AILkLqE~G~L~eLK~KWWks 47 (551)
.+++++| .++.++.+|.++.++|.+..+.+||...
T Consensus 242 ~~~k~~~~l~~~l~~al~~l~~~g~~~~i~~k~~~~ 277 (291)
T 2yjp_A 242 AVQKGNADLLNWVNGEIAAMKKDGRLKAAYEKTLLP 277 (291)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSHHHHHHHHHTHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHhccc
Confidence 3456665 7899999999999999999999999864
No 106
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=30.61 E-value=13 Score=34.18 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=27.9
Q ss_pred cCCCCC-cccchhhHHHHHHHhhcchhhhhhhhh
Q psy1414 13 RHLIGS-PWRDRISLAILELQEKGTIQMLYDKWW 45 (551)
Q Consensus 13 ~~P~GS-pyR~~is~AILkLqE~G~L~eLK~KWW 45 (551)
++++++ ..++.++.+|.++.++|.++.+.+||.
T Consensus 206 ~~~k~~~~l~~~l~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 206 AFRKGDEALRDAFDVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp EECGGGHHHHHHHHHHHHHHHHHTHHHHHHGGGT
T ss_pred EEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhC
Confidence 345553 478899999999999999999999995
No 107
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=28.57 E-value=33 Score=29.60 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcCCcccccchhhhhhcCchH--HHhhhc
Q psy1414 162 SADILKLAGNYVKNIRHVEVAQQDIKVAMYADKV--LMDMFY 201 (551)
Q Consensus 162 taeILELAgn~a~~~k~~rItp~hi~~Ai~~D~e--L~~Lf~ 201 (551)
+..+|+.|...|+..+...|+++|+-+|+-.+++ ...+++
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~ 125 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLR 125 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHH
Confidence 3578899999999999999999999999987653 455555
No 108
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=25.50 E-value=2.9e+02 Score=22.85 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=24.6
Q ss_pred CCcccccchhhhhhc------CchHHHhhhcCCCccccCCccccccccCCCcchhHHHHHHhH
Q psy1414 177 RHVEVAQQDIKVAMY------ADKVLMDMFYQDEHTSDSGSIVHSVSETTSSELTYEEIVHDL 233 (551)
Q Consensus 177 k~~rItp~hi~~Ai~------~D~eL~~Lf~~~~~ti~~ggv~~~~~~~~~~~~~~~~~v~~~ 233 (551)
+...|+..++..++. .+.++..+|+. ....+ ++.++|+|.+.-+
T Consensus 33 ~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~--~d~~~-----------~g~i~~~ef~~~~ 82 (162)
T 1top_A 33 GGGDISTKELGTVMRMLGQNPTKEELDAIIEE--VDEDG-----------SGTIDFEEFLVMM 82 (162)
T ss_dssp CSSEEEGGGHHHHHHHTTCCCCHHHHHHHHHH--HCTTS-----------CCEEEHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHH--HcCCC-----------CCcEeHHHHHHHH
Confidence 445577777766654 35566677763 11222 2456788855444
No 109
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=25.05 E-value=2e+02 Score=27.99 Aligned_cols=80 Identities=19% Similarity=0.374 Sum_probs=54.1
Q ss_pred hHHHhhhHHHHHHhhhccCCCCCCcccccCCCccccHHHHHHHHHhhHHHHHHHHhHH---HHHHHHHHHhcCC-----C
Q psy1414 267 LDQMFANLMDIYEFSLNFKTPPDPLFIHETTSSELTYEEIVHDLVTDEKQHLRDLHMI---NKVFLEEIVKLIP-----P 338 (551)
Q Consensus 267 ~~~~f~ni~~i~~~~~~~~~~~d~~e~~p~~~~~~~y~evv~eli~tEr~YirdL~~I---i~~f~~~~~~~~~-----~ 338 (551)
.+.+|.|||| -|-=..+.++.--+.|.+-++-. .++|.+.+.+..+ +
T Consensus 14 t~~~y~nime-------------------------qfnP~l~nlv~lg~~Y~kAl~a~~~A~~~y~dA~~Kige~A~~S~ 68 (222)
T 3ok8_A 14 TMAIYKSIME-------------------------QFNPALENLVYLGNNYLRAFHALSEAAEVYFSAIQKIGEQALQSS 68 (222)
T ss_dssp HHHHHHHHHH-------------------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH-------------------------hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4789999999 33336677888889998887776 4578888877522 1
Q ss_pred CChhHHHHhhhcHHHHHH------------HHHHHHHHHHHhhccc
Q psy1414 339 GKCKELDQMFANLMDIYE------------FSCNLVGILEDNLEMC 372 (551)
Q Consensus 339 ~~~~~v~~iFgNI~dIye------------f~~~~L~~LEd~~e~~ 372 (551)
. ..++....--|.+.|+ |+..++.-||+.+|+.
T Consensus 69 ~-skeLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D 113 (222)
T 3ok8_A 69 T-SQILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLD 113 (222)
T ss_dssp S-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3456555555555543 5566777778777654
No 110
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=24.70 E-value=55 Score=28.27 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCcccccchhhhhhcC-chHHHhhhcC
Q psy1414 162 SADILKLAGNYVKNIRHVEVAQQDIKVAMYA-DKVLMDMFYQ 202 (551)
Q Consensus 162 taeILELAgn~a~~~k~~rItp~hi~~Ai~~-D~eL~~Lf~~ 202 (551)
+..+|+.|...|+..+...|+++|+-+|+-. |.....+++.
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~~ 128 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKA 128 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHHH
Confidence 4568899999999999999999999999984 4345556653
No 111
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=24.59 E-value=3e+02 Score=22.86 Aligned_cols=28 Identities=7% Similarity=-0.038 Sum_probs=21.3
Q ss_pred hcCCcccccchhhhhhc------CchHHHhhhcC
Q psy1414 175 NIRHVEVAQQDIKVAMY------ADKVLMDMFYQ 202 (551)
Q Consensus 175 ~~k~~rItp~hi~~Ai~------~D~eL~~Lf~~ 202 (551)
..+...|++.++..+++ .+.++..++..
T Consensus 22 ~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~ 55 (159)
T 2ovk_C 22 DGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGT 55 (159)
T ss_dssp TTSSSEEEGGGHHHHHHHTTCCCCHHHHHHTTCC
T ss_pred CCCCCCCcHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45667899999988875 56778888875
No 112
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=24.48 E-value=1.2e+02 Score=27.69 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=54.8
Q ss_pred cccHhHHHHhhhcCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhcC
Q psy1414 127 VLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFYQ 202 (551)
Q Consensus 127 ~FPV~ri~r~Lk~~~~~~Rv~~~a~VyLaAVLEYLtaeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~~ 202 (551)
.+++.++++++|+ .-+--|..+-.-=+..+++=-..++|..|-..|+.+++.-|.|+|+-+. .+=.|=+..|+.
T Consensus 2 vm~~~~~e~lFR~-aa~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPIT-kGlqesi~~F~~ 75 (148)
T 1wwi_A 2 LMKVAEFERLFRQ-AAGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIA-KGLQETLQEFRR 75 (148)
T ss_dssp CSCHHHHHHHHHH-HHCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCC-HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH-HhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCcc-HHHHHHHHHHHH
Confidence 4688999999974 3344566666666778888888999999999999999999999997542 222333555654
No 113
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=23.84 E-value=40 Score=31.03 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHH-hcCCcccccchhhhhhcCch
Q psy1414 163 ADILKLAGNYVK-NIRHVEVAQQDIKVAMYADK 194 (551)
Q Consensus 163 aeILELAgn~a~-~~k~~rItp~hi~~Ai~~D~ 194 (551)
.++|+.|...|+ ..+...|+++||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 468999999999 99999999999999999887
No 114
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=23.53 E-value=1.2e+02 Score=26.46 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=14.0
Q ss_pred hhhhHHHhhhHHHHHHhhhcc
Q psy1414 264 CKELDQMFANLMDIYEFSLNF 284 (551)
Q Consensus 264 ~~~~~~~f~ni~~i~~~~~~~ 284 (551)
-..=...+.|+++||-+-+.+
T Consensus 21 ~~~eRe~ye~LAelYSII~tl 41 (109)
T 2f6m_B 21 TSKDKEVIETLSEIYSIVITL 41 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhHHHHHHHHHHH
Confidence 444556789999988554443
No 115
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=23.49 E-value=1.8e+02 Score=24.88 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=38.0
Q ss_pred HHHHHHhHHHHHHHHHHHhc----CCCCChhHHHHhhhcHHHHHHHHHHHHHHHHH
Q psy1414 316 QHLRDLHMINKVFLEEIVKL----IPPGKCKELDQMFANLMDIYEFSCNLVGILED 367 (551)
Q Consensus 316 ~YirdL~~Ii~~f~~~~~~~----~~~~~~~~v~~iFgNI~dIyef~~~~L~~LEd 367 (551)
.|++-|+.=++.|-.++.+. .+......|-++|.||...|---.++...+|+
T Consensus 4 ef~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee 59 (98)
T 3f1i_H 4 QFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDE 59 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888899999999885 33467889999999998777644444444443
No 116
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=23.18 E-value=36 Score=29.58 Aligned_cols=40 Identities=10% Similarity=0.239 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcCCcccccchhhhhhcCchH--HHhhhc
Q psy1414 162 SADILKLAGNYVKNIRHVEVAQQDIKVAMYADKV--LMDMFY 201 (551)
Q Consensus 162 taeILELAgn~a~~~k~~rItp~hi~~Ai~~D~e--L~~Lf~ 201 (551)
+..+|+.|...|+..+...|+++|+-+|+-.+++ -..+++
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~ 125 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLN 125 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHH
Confidence 4568899999999999999999999999976543 234554
No 117
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=21.15 E-value=55 Score=36.39 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhcCCcccccchhhhhhcCchHHHhhhc
Q psy1414 162 SADILKLAGNYVKNIRHVEVAQQDIKVAMYADKVLMDMFY 201 (551)
Q Consensus 162 taeILELAgn~a~~~k~~rItp~hi~~Ai~~D~eL~~Lf~ 201 (551)
+.++|+.|-+.|+..++..|+|+|+-+|+-.|.....++.
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 3578999999999999999999999999999887777664
Done!