RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1414
(551 letters)
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 158 bits (400), Expect = 2e-46
Identities = 98/151 (64%), Positives = 120/151 (79%), Gaps = 3/151 (1%)
Query: 51 VLQQVHPTLTAREDACLYVESLVLKILAMLCSKPSPHTTSDVEERVRRQFPTPIDKWAMH 110
V QVHPTL + +DA YVE L+L++L MLC P + SDVEERV++ FP PIDKWA+
Sbjct: 25 VQGQVHPTLESNDDALQYVEELILQLLNMLCQAQ-PRSASDVEERVQKSFPHPIDKWAIA 83
Query: 111 EAKEAIEKSKKKISCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAG 170
+A+ AIEK K++ + L LPVEKIH LL K+VL YK++ VS+YI AVLEYISADILKLAG
Sbjct: 84 DAQSAIEKRKRR-NPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLAG 141
Query: 171 NYVKNIRHVEVAQQDIKVAMYADKVLMDMFY 201
NYV+NIRH E+ +QDIKVAM ADKVLMDMF+
Sbjct: 142 NYVRNIRHYEITKQDIKVAMCADKVLMDMFH 172
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 97.9 bits (243), Expect = 5e-24
Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 32/233 (13%)
Query: 300 ELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSC 359
E TY ++V + + +Q++R+L++I KVF E V +++ +F+ ++DI+E S
Sbjct: 1 EQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSV 60
Query: 360 NLVGILEDNLEMCNEASNVV-IGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKN 418
L+G +ED +EM +E S +GSC E+LAE FD Y YA+DI ++ L +L
Sbjct: 61 KLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSK 120
Query: 419 PEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQGFKEAVKYYLPKLFLHP 478
P ++ LQS +GFKEAV+Y LP+L L P
Sbjct: 121 PGAALYLQSIG-------------------------------EGFKEAVQYVLPRLLLAP 149
Query: 479 LWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGR 531
++HC YF+ ++ L S D+ED+E L Q L +Q + R
Sbjct: 150 VYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGMEKICSKSLAKRR 202
Score = 51.3 bits (122), Expect = 5e-08
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 223 ELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSL 282
E TY ++V + + +Q++R+L++I KVF E V +++ +F+ ++DI+E S+
Sbjct: 1 EQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSV 60
Query: 283 NF 284
Sbjct: 61 KL 62
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 106
Score = 69.9 bits (171), Expect = 2e-15
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 118 KSKKKISCLVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIR 177
KS+ + L PV ++H LL K +V +Y+ AVLEY++A+IL+LAGN ++ +
Sbjct: 3 KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 62
Query: 178 HVEVAQQDIKVAMYADKVLMDMF 200
+ + +++A+ D+ L +
Sbjct: 63 KTRIIPRHLQLAIRNDEELNKLL 85
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 67.1 bits (164), Expect = 2e-14
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 126 LVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQD 185
++ PV ++ + K +Y++ + +Y+ AVLEY++A+IL+LA N ++ + V +
Sbjct: 10 VIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRH 69
Query: 186 IKVAMYADKVLMDMF 200
I +A+ D+ L +
Sbjct: 70 ILLAVANDEELNQLL 84
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
H2A.Z [TaxId: 9606]}
Length = 103
Score = 60.3 bits (146), Expect = 5e-12
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 118 KSKKKISCLVLPVEKIHYLLSK-DVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNI 176
S+ + + L PV +IH L +V ++Y A+LEY++A++L+LAGN K++
Sbjct: 2 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 61
Query: 177 RHVEVAQQDIKVAMYADKVLMDMF 200
+ + + +++A+ D+ L +
Sbjct: 62 KVKRITPRHLQLAIRGDEELDSLI 85
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 59.0 bits (142), Expect = 1e-10
Identities = 32/240 (13%), Positives = 78/240 (32%), Gaps = 45/240 (18%)
Query: 276 DIYEFSLNFKTPPDPLFIHETTSSELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKL 335
+IYE + ++ P P + + ++ E+++ L I + F++ + +
Sbjct: 5 EIYEDLMRLESVPTP----PKMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQRF 60
Query: 336 IPPGKCKELDQMFANLMDIYEFSCNLVGILEDNLEMCNEASNVVIGSCLEELAEAAEFDV 395
+ P ++++ +F N+ +++ + + L+D L + + + E F V
Sbjct: 61 LKP---QDMETIFVNIEELFSVHTHFLKELKDALAGPGATT---LYQVFIKYKE--RFLV 112
Query: 396 YSRYAKDITYYKCPEKLLEELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIP 455
Y RY + L + E
Sbjct: 113 YGRYCS---------------------------------QVESASKHLDQVATAREDVQM 139
Query: 456 LQSGGQGFKEAVKYYLPKLFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKAL 515
++ L L + P+ Y ++ L + D ++E+L ++ L
Sbjct: 140 KLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQDATEKENLRLALDAMRDL 199
Score = 43.6 bits (102), Expect = 2e-05
Identities = 8/58 (13%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 227 EEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNF 284
+ ++ E+++ L I + F++ + + + P ++++ +F N+ +++ +F
Sbjct: 29 CCCLREIQQTEEKYTDTLGSIQQHFMKPLQRFLKP---QDMETIFVNIEELFSVHTHF 83
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Length = 234
Score = 55.6 bits (133), Expect = 2e-09
Identities = 30/249 (12%), Positives = 84/249 (33%), Gaps = 36/249 (14%)
Query: 297 TSSELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVK--LIPPGKCKELDQMFANLMDI 354
E+ +E++++L E+ H+R L ++++VF + + + ++ P EL ++F+NL DI
Sbjct: 17 KPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVSREGILSP---SELRKIFSNLEDI 73
Query: 355 YEFSCNLVGILEDNLEMCNEASNVVIGSCLEELAEAAEFDVYSR-YAKDITYYKCPEKLL 413
+ L ++ + + IG L + A + +++
Sbjct: 74 LQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMI 133
Query: 414 EELKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQGFKEAVKYYLPK 473
+ + K+ +Q + + L
Sbjct: 134 KSRQK-----------------------------KDSRFQTFVQDA-ESNPLCRRLQLKD 163
Query: 474 LFLHPLWHCFLYFDYIRILRGLSPDKEDRESLIQVEGLLKALQVDLSDSLQNYPRNGRDT 533
+ + Y + + + +RE + + + + ++ +++ R
Sbjct: 164 IIPTQMQRLTKYPLLLDNIAKYTEWPTEREKVKKAADHCRQILNFVNQAVKEAENKQRLE 223
Query: 534 GIRALIDAT 542
+ +D +
Sbjct: 224 DYQRRLDTS 232
Score = 39.4 bits (91), Expect = 5e-04
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 220 TSSELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVK--LIPPGKCKELDQMFANLMDI 277
E+ +E++++L E+ H+R L ++++VF + + + ++ P EL ++F+NL DI
Sbjct: 17 KPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVSREGILSP---SELRKIFSNLEDI 73
Query: 278 YEFSLNF 284
+ +
Sbjct: 74 LQLHIGL 80
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 203
Score = 53.2 bits (127), Expect = 9e-09
Identities = 29/212 (13%), Positives = 75/212 (35%), Gaps = 38/212 (17%)
Query: 305 EIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGI 364
+++++++ E+ +++ L I + +L++ K ++L +F N+ DIY F V
Sbjct: 17 NVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRD 76
Query: 365 LEDNLEMCNEASNVVIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIP 424
LE + + + LE F +YS Y + + +L + +K+
Sbjct: 77 LEKQYNNDDPHLSEIGPCFLE---HQDGFWIYSEYCNN--HLDACMELSKLMKDSRYQHF 131
Query: 425 LQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQGFKEAVKYYLPKLFLHPLWHCFL 484
++ + ++ + + L P+
Sbjct: 132 FEAC--------------------------------RLLQQMIDIAIDGFLLTPVQKICK 159
Query: 485 YFDYI-RILRGLSPDKEDRESLIQVEGLLKAL 515
Y + +L+ + D D + +++ +
Sbjct: 160 YPLQLAELLKYTAQDHSDYRYVAAALAVMRNV 191
Score = 45.1 bits (106), Expect = 5e-06
Identities = 13/57 (22%), Positives = 33/57 (57%)
Query: 228 EIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNF 284
+++++++ E+ +++ L I + +L++ K ++L +F N+ DIY F + F
Sbjct: 17 NVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGF 73
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 206
Score = 53.2 bits (127), Expect = 1e-08
Identities = 31/212 (14%), Positives = 76/212 (35%), Gaps = 28/212 (13%)
Query: 305 EIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSCNLVGI 364
+++ +L+ E+ +++DL+ + + +L+ + K + ELD +F NL ++ EF +
Sbjct: 10 KVICELLETERTYVKDLNCLMERYLKPLQKETFLTQ-DELDVLFGNLTEMVEFQVEFLKT 68
Query: 365 LEDNLEMCNEASNVVIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPEVSIP 424
LED + + + + +++ + + YA Y
Sbjct: 69 LEDGVRLVPDLEKLEKVDQFKKVLFSL-GGSFLYYADRFKLYSA---------------- 111
Query: 425 LQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQGFKEAVKYYLPKLFLHPLWHCFL 484
CA ++ K P+ L++ + L + + L + P+
Sbjct: 112 ----FCA---SHTKVPKVLVKAKTDTAFKAFLDAQNPRQQH--SSTLESYLIKPIQRVLK 162
Query: 485 YFDYI-RILRGLSPDKEDRESLIQVEGLLKAL 515
Y + + + E+ L + +
Sbjct: 163 YPLLLRELFALTDAESEEHYHLDVAIKTMNKV 194
Score = 40.1 bits (93), Expect = 2e-04
Identities = 15/57 (26%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 228 EIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYEFSLNF 284
+++ +L+ E+ +++DL+ + + +L+ + K + ELD +F NL ++ EF + F
Sbjct: 10 KVICELLETERTYVKDLNCLMERYLKPLQKETFLTQ-DELDVLFGNLTEMVEFQVEF 65
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 49.7 bits (118), Expect = 2e-07
Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 8/125 (6%)
Query: 295 ETTSSELTY-EEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMD 353
+TT+ +Y ++ +++ E ++ ++L + +L + + + NL +
Sbjct: 5 DTTAINKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTSEKLSS-ANISYLMGNLEE 63
Query: 354 IYEFSCNLVGILEDNLEMCNEASNVVIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLL 413
I F LV LE+ ++ +G C L +Y Y + +L
Sbjct: 64 ICSFQQMLVQSLEECTKLPEAQQR--VGGCFLNLMPQM-KTLYLTY---CANHPSAVNVL 117
Query: 414 EELKN 418
E
Sbjct: 118 TEHSE 122
Score = 42.0 bits (98), Expect = 6e-05
Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 218 ETTSSELTY-EEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMD 276
+TT+ +Y ++ +++ E ++ ++L + +L + + + NL +
Sbjct: 5 DTTAINKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTSEKLSS-ANISYLMGNLEE 63
Query: 277 IYEFSLNF 284
I F
Sbjct: 64 ICSFQQML 71
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 47.1 bits (111), Expect = 1e-06
Identities = 32/221 (14%), Positives = 65/221 (29%), Gaps = 38/221 (17%)
Query: 297 TSSELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYE 356
T +E + +H+L+ E+ ++ DL ++ ++F + +++ + KE+ +F N ++
Sbjct: 4 TPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKPLMESELLTE-KEVAMIFVNWKELIM 62
Query: 357 FSCNLVGILEDNLEMCNEASNV-VIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEE 415
+ L+ L +M E V +IG L Y R+
Sbjct: 63 CNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLP--HMQPYIRFCSR------------- 107
Query: 416 LKNPEVSIPLQSDCCAKDITYYKCPEKLLEELKNPEVSIPLQSGGQGFKEAVKYYLPKLF 475
+ ++ + L
Sbjct: 108 --------------------QLNGAALIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSFI 147
Query: 476 LHPLWHCFLYFDYI-RILRGLSPDKEDRESLIQVEGLLKAL 515
L P+ Y I IL + D L + L
Sbjct: 148 LKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEEL 188
Score = 38.6 bits (89), Expect = 8e-04
Identities = 19/142 (13%), Positives = 59/142 (41%), Gaps = 4/142 (2%)
Query: 220 TSSELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPGKCKELDQMFANLMDIYE 279
T +E + +H+L+ E+ ++ DL ++ ++F + +++ + KE+ +F N ++
Sbjct: 4 TPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKPLMESELLTE-KEVAMIFVNWKELIM 62
Query: 280 FSLNFKTPPDPLFIHETTSSELTYEEIVHDLVTDEKQHLRDLHMINKVFLEEIVKLIPPG 339
++ L + + S E +++ D+++ + H++ L +
Sbjct: 63 CNIKL---LKALRVRKKMSGEKMPVKMIGDILSAQLPHMQPYIRFCSRQLNGAALIQQKT 119
Query: 340 KCKELDQMFANLMDIYEFSCNL 361
+ F +++ +
Sbjct: 120 DEAPDFKEFVKRLEMDPRCKGM 141
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat
(Rattus norvegicus), GluR2 [TaxId: 10116]}
Length = 260
Score = 47.3 bits (111), Expect = 2e-06
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 17 GSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 49
GS + ++LA+L+L E+G + L +KWW + G
Sbjct: 225 GSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 257
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand
binding core {Rat (Rattus norvegicus), GluR5 [TaxId:
10116]}
Length = 246
Score = 45.9 bits (107), Expect = 4e-06
Identities = 17/30 (56%), Positives = 27/30 (90%)
Query: 17 GSPWRDRISLAILELQEKGTIQMLYDKWWK 46
GSP+RD+I++AIL+LQE+G + M+ +KWW+
Sbjct: 217 GSPYRDKITIAILQLQEEGKLHMMKEKWWR 246
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 289
Score = 45.0 bits (105), Expect = 1e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 17 GSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 49
SPW+ +SL+IL+ E G ++ L W +
Sbjct: 254 DSPWKQNVSLSILKSHENGFMEDLDKTWVRYQE 286
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor
subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId:
10116]}
Length = 277
Score = 45.0 bits (105), Expect = 1e-05
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 17 GSPWRDRISLAILELQEKGTIQMLYDKWWKNT 48
GSPW+ +I LA+L+ G ++ L W
Sbjct: 244 GSPWKRQIDLALLQFVGDGEMEELETLWLTGI 275
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 43.6 bits (102), Expect = 2e-05
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 14/120 (11%)
Query: 304 EEIVHDLVTDEKQHLRDLHMINKVFLEEIVK-----LIPPGKCKELDQMFANLMDIYEFS 358
++++L+ E+ ++ +L + + + E+ LI G + + +F N+ +IY F
Sbjct: 11 RHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFH 70
Query: 359 CNLVGILEDNLEMCNEASNVVIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKN 418
+ ++G C E E EF +Y +Y E L + +
Sbjct: 71 NR----IFLRELESCIDCPELVGRCFLERME--EFQIYEKY---CQNKPRSESLWRQCSD 121
Score = 39.3 bits (91), Expect = 4e-04
Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 227 EEIVHDLVTDEKQHLRDLHMINKVFLEEIVK-----LIPPGKCKELDQMFANLMDIYEFS 281
++++L+ E+ ++ +L + + + E+ LI G + + +F N+ +IY F
Sbjct: 11 RHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFH 70
Query: 282 LNF 284
Sbjct: 71 NRI 73
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 41.6 bits (97), Expect = 7e-05
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 12/137 (8%)
Query: 304 EEIVHDLVTDEKQHLRDLHMINKVFLEEI---VKLIPPGKCKELDQMFANLMDIYEFSCN 360
E I+ +L+ EK ++RDL +L E+ V+ IPPG + +F N+ +IYEF N
Sbjct: 5 EFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNN 64
Query: 361 LVGILEDNLEMCNEASNVVIGSCLEELAEAAEFDVYSRYAKDITYYKCPEKLLEELKNPE 420
+ LE + +G C A+ +F +Y Y +L+ E
Sbjct: 65 IF---LKELEKYEQ-LPEDVGHCFVTWAD--KFQMYVTY---CKNKPDSTQLILEHAGSY 115
Query: 421 VSIPLQSDCCAKDITYY 437
Q A I+ Y
Sbjct: 116 FDEIQQRHGLANSISSY 132
Score = 39.7 bits (92), Expect = 3e-04
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 227 EEIVHDLVTDEKQHLRDLHMINKVFLEEI---VKLIPPGKCKELDQMFANLMDIYEFSLN 283
E I+ +L+ EK ++RDL +L E+ V+ IPPG + +F N+ +IYEF N
Sbjct: 5 EFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNN 64
Query: 284 F 284
Sbjct: 65 I 65
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core
{Synechocystis sp., GluR0 [TaxId: 1143]}
Length = 226
Score = 36.3 bits (82), Expect = 0.006
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 17 GSPWRDRISLAILELQEKGTIQMLYDKW 44
SP + I++ +L L I ++W
Sbjct: 197 NSPLQKTINVEMLNLLYSRVIAEFTERW 224
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma
(Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 33.3 bits (76), Expect = 0.009
Identities = 8/70 (11%), Positives = 25/70 (35%)
Query: 128 LPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIK 187
LP+ +I ++ D + + + ++ A + ++ + + + DI
Sbjct: 1 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIA 60
Query: 188 VAMYADKVLM 197
+A+
Sbjct: 61 MAITKFDQFD 70
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA
{Campylobacter jejuni [TaxId: 197]}
Length = 248
Score = 34.3 bits (77), Expect = 0.027
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 20 WRDRISLAILELQEKGTIQMLYDKWWK 46
++ I I++L ++ YD+ K
Sbjct: 206 LKEFIDNLIIKLGQEQFFHKAYDETLK 232
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 92
Score = 31.6 bits (72), Expect = 0.038
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 51 VLQQVHPTLTAREDACLYVESLV---LKILA------MLCSKPSPHTTSDVEERVRRQFP 101
VL+QVHP A + S V + +A +K S T+ +++ VR P
Sbjct: 12 VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLP 71
Query: 102 TPIDKWAMHEAKEAIEK 118
+ K A+ E +A+ K
Sbjct: 72 GELAKHAVSEGTKAVTK 88
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 30.1 bits (68), Expect = 0.080
Identities = 13/63 (20%), Positives = 24/63 (38%)
Query: 128 LPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQDIK 187
P +I ++ D KV V + I+ LE +LK A ++ + +K
Sbjct: 3 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 62
Query: 188 VAM 190
+
Sbjct: 63 QCI 65
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli
[TaxId: 562]}
Length = 223
Score = 32.6 bits (73), Expect = 0.082
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 20 WRDRISLAILELQEKGTIQMLYDKWW 45
RD+++ A+ L+E GT +Y KW+
Sbjct: 193 LRDKVNGALKTLRENGTYNEIYKKWF 218
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO)
protein {Salmonella typhimurium [TaxId: 90371]}
Length = 238
Score = 31.6 bits (70), Expect = 0.21
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 18 SPWRDRISLAILELQEKGTIQMLYDKW 44
+ + A+ EL++ GT + K+
Sbjct: 204 TELKAAFDKALTELRQDGTYDKMAKKY 230
>d1tp6a_ d.17.4.12 (A:) Hypothetical protein PA1314 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 126
Score = 26.7 bits (59), Expect = 4.4
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 7 VLSIVSRHLIGSPWRDRISLAILELQEKGTIQMLY 41
L+ + +R+S +L ++G + +
Sbjct: 85 TLAYREIQSDAAGRSERLSTVVLHRDDEGRLYWRH 119
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 26.7 bits (59), Expect = 4.7
Identities = 6/65 (9%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 126 LVLPVEKIHYLLSKDVLQYKVEMNVSIYITAVLEYISADILKLAGNYVKNIRHVEVAQQD 185
+ + +L + + + ++ + ++ + A Y V +D
Sbjct: 78 ELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGED 136
Query: 186 IKVAM 190
++ A+
Sbjct: 137 VEKAI 141
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,126,096
Number of extensions: 106364
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 48
Length of query: 551
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 461
Effective length of database: 1,171,896
Effective search space: 540244056
Effective search space used: 540244056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)