BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14140
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 59 TCRKGESTKVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFG 114
G +V+D G DPN D DG TPLH+AA GH + V+ LL G D G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 115 KSPINDAAENQQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-L 169
++P++ AAEN E+ +G DPN KD DG TPLH+AA GH + V+ LL G
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 170 VPDKFGKSPINDAAENQQMEV 190
D G++P++ A E+ E+
Sbjct: 131 TSDSDGRTPLDLAREHGNEEI 151
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQMEV 129
+G DPN KD DG TPLH+AA GH + V+ LL G D G++P++ AAEN E+
Sbjct: 59 KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEI 118
Query: 130 ----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
+G DPN D DG TPL A G+ + V+ L + GG L
Sbjct: 119 VKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 112 KFGKSPINDAAENQQMEVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK 168
+ GK I A + V+D G DPN D DG TPLH+AA GH + V+ LL G
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
Query: 169 -LVPDKFGKSPINDAAENQQMEV 190
D G++P++ AAEN E+
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEI 85
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 78/144 (54%), Gaps = 9/144 (6%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G+ +VR G D N KD DG TPLH AA GH + V LL+ G + DK G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
+P++ AA +E+ + G D N KD DG TPLH AA GH + V LL+ G +
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+P + A +N +++ V
Sbjct: 129 AQDKFGKTPFDLAIDNGNEDIAEV 152
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 73/141 (51%), Gaps = 9/141 (6%)
Query: 59 TCRKGESTKVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFG 114
G +V+D G D N D DG TPLH AA GH + V+ LL G D G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 115 KSPINDAAENQQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-L 169
K+P++ AAEN EV QG DPN KD DG TPLH AA GH + V+ LL G
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 170 VPDKFGKSPINDAAENQQMEV 190
D G++P++ A E+ EV
Sbjct: 131 TSDSDGRTPLDLAREHGNEEV 151
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQMEV 129
QG DPN KD DG TPLH AA GH + V+ LL G D GK+P++ AAEN EV
Sbjct: 59 QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEV 118
Query: 130 ----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
QG DPN D DG TPL A G+ + V+ L + GG L
Sbjct: 119 VKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 112 KFGKSPINDAAENQQMEVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK 168
+ GK I A + V+D G D N D DG TPLH AA GH + V+ LL G
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 169 -LVPDKFGKSPINDAAENQQMEV 190
D GK+P++ AAEN EV
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEV 85
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G+ +VR G D N KD DG TPLH AA GH + V LL+ G + DK G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
+P++ AA +E+ + G D N KD DG TPLH AA GH + V LL+ G +
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+P + A +++ V
Sbjct: 129 AQDKFGKTPFDLAIREGHEDIAEV 152
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 9/144 (6%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G+ +VR G D N D G TPLH AA GH + V LL+YG + D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
+P++ AA+N +E+ + G D N KD +G TPLH AA GH + V LL+YG +
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 77/144 (53%), Gaps = 9/144 (6%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G+ +VR G D N KD DG TPLH AA GH + V LL+ G + DK G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
+P++ AA +E+ + G D N KD DG TPLH AA GH + V LL+ G +
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 60 CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK 115
R G+ +VR G D N D DG TPLH AAS GH + V LL+ G + D G
Sbjct: 22 ARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGI 81
Query: 116 SPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
+P++ AA +E+ + G D N D DG TPLH AA GH + V LL++G +
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Query: 171 PDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 74/141 (52%), Gaps = 9/141 (6%)
Query: 59 TCRKGESTKVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
G +V+D G D N D DG TPLH AA GH + V+ L+ G + D G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 115 KSPINDAAENQQMEVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
++P++ AAEN EV +G D N KD DG TPLH AA GH + V+ L+ G +
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 170 VPDKFGKSPINDAAENQQMEV 190
D G++P++ A E+ EV
Sbjct: 131 TSDSDGRTPLDLAREHGNEEV 151
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
+G D N KD DG TPLH AA GH + V+ L+ G + D G++P++ AAEN EV
Sbjct: 59 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 118
Query: 130 R----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
+G D N D DG TPL A G+ + V+ L + GG L
Sbjct: 119 VKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 9/144 (6%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G+ +VR G D N +D G TPLH AA +GH + V LL++G + DK G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
+P++ AA +E+ + G D N D G TPLH AA GH + V LL+YG +
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV----RDQGVD 135
+G TPLH AA GH + V+ LL G + DK G++P++ AA N +EV + G D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
N KD +G TPLH AA GH + V+ LL G + DK G++P++ AA N +EV
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
+ G D N KD +G TPLH AA GH + V+ LL G + DK G++P++ AA N +E
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 129 V----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
V + G D N KD +G TPLH AA GH + V+ LL G
Sbjct: 83 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 59 TCRKGESTKVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
G +V+D G D N D DG TPLH+AA GH + V+ L+ G + D G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 115 KSPINDAAENQQMEVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
++P++ AA+ E+ +G D N KD DG TPLH+AA GH + V+ L+ G +
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 170 VPDKFGKSPINDAAENQQMEV 190
D G++P++ A E+ E+
Sbjct: 131 TSDSDGRTPLDLAREHGNEEI 151
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G +VR G D N D G TPLH AA GH + V LL+ G + D G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
+P++ AA +E+ + G D N KD +G TPLH AA+RGH + V LL+YG +
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + N +++ +
Sbjct: 141 AQDKFGKTAFDISINNGNEDLAEI 164
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 60 CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK 115
R G+ +VR G D N D G TPLH AA GH + V LL++G + D +G
Sbjct: 22 ARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGF 81
Query: 116 SPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
+P++ AA +E+ + G D N D G+TPLH AA GH + V LL+YG +
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 171 PDKFGKSPINDAAEN 185
DKFGK+ + + +N
Sbjct: 142 QDKFGKTAFDISIDN 156
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 9/144 (6%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G+ +VR G D N D G+TPLH AA GH + V LL++G + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
+P++ AA+N +E+ + G D N +D G TPLH AA RGH + V LL++G +
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G+ +VR G D N D G TPLH AA GH + V LL++G + D FG
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
+P++ AA +E+ + G D N D DG TPLH AA G+ + V LL++G +
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G+ +VR G D N +D G TPLH AA GH + V LL+ G + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
+P++ AA +E+ + G D N D G TPLH AA RGH + V LL+ G +
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 60 CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKF-GK 115
R G+ +VR G D N +D G TPLH AA GH + V LL+ G + F G
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGS 81
Query: 116 SPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
+P++ AA+ +E+ + G D N D G+TPLH AA GH + V LL+YG +
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA 141
Query: 171 PDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 9/143 (6%)
Query: 60 CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK 115
R G+ +VR G D N D G TPLH AA+ GH + V LL++G + D G
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS 81
Query: 116 SPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
+P++ AA +E+ + G D N D G TPLH AA GH + V LL++G +
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 171 PDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 9/144 (6%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G+ +VR G D N D G TPLH + GH + + LL+Y + DK G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
+P++ AA +E+ + G D N D G TPLH AA GH + V LL+YG +
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G+ +VR G D N D G TPLH AA GH + V LL+ G + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
+P++ AA+ +EV + G D N D +G TPLH AA+ GH + V LL++G +
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 9/143 (6%)
Query: 60 CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK 115
R G+ +VR G D N D G TPLH AA+ GH + V LL++G + D G
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS 81
Query: 116 SPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
+P++ AA +E+ + G D N D G TPLH AA GH + V LL++G +
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 171 PDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 60 CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK 115
R G+ +VR G D N D G TPLH AA+ GH + V LLR G + D G
Sbjct: 10 ARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT 69
Query: 116 SPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
+P++ AA +E+ + G D N KD G TPL+ AA GH + V LL++G +
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129
Query: 171 PDKFGKSPIN 180
DKFGK+ +
Sbjct: 130 QDKFGKTAFD 139
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G +VR G D N +D G TPLH AA GH + V LL+ G + D G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
+P+ AA +E+ + G D N D +G TPLH AA GH + V LL+ G +
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV----RDQGVD 135
+G TPLH AA GH + V+ LL G + DK G++P++ AA N +EV + G D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
N KD +G TPLH AA GH + V+ LL G
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
+ G D N KD +G TPLH AA GH + V+ LL G + DK G++P++ AA N +E
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 129 V 129
V
Sbjct: 83 V 83
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 105
+ G D N KD +G TPLH AA GH + V+ LL G
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 63/139 (45%), Gaps = 32/139 (23%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK 115
R G+ +VR G D N D DG TPLH AA GH + V LL+YG
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA--------- 71
Query: 116 SPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKF 174
D N +D G TPLH AA RGH + V LL++G + DKF
Sbjct: 72 -------------------DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKF 112
Query: 175 GKSPINDAAENQQMEVSTV 193
GK+ + + +N +++ +
Sbjct: 113 GKTAFDISIDNGNEDLAEI 131
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 113 FGKSPINDAAENQQMEVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
GK + A Q EVR G D N D DG TPLH AA GH + V LL+YG +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV 73
Query: 170 -VPDKFGKSPINDAAENQQMEVSTV 193
D FG +P++ AA +E+ V
Sbjct: 74 NAEDNFGITPLHLAAIRGHLEIVEV 98
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 9/143 (6%)
Query: 58 CTCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLL-RYGGKLVPDKF 113
C R G + V+ + +PNL G TPLH AA GH + V LL + + K
Sbjct: 86 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK 145
Query: 114 GKSPINDAAENQQMEVRDQGVD----PNLKDGDGATPLHFAASRGHADCVRWLLRYGGK- 168
G +P++ AA+ ++ V + ++ PN +G TPLH A + D V+ LL GG
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Query: 169 LVPDKFGKSPINDAAENQQMEVS 191
P G +P++ AA+ Q+EV+
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVA 228
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAE----NQ 125
+G PN+ + TPLH AA GH + ++LL+ K+ K ++P++ AA N
Sbjct: 36 RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM 95
Query: 126 QMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLL-RYGGKLVPDKFGKSPINDAAE 184
+ + +PNL G TPLH AA GH + V LL + + K G +P++ AA+
Sbjct: 96 VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAK 155
Query: 185 NQQMEVS 191
++ V+
Sbjct: 156 YGKVRVA 162
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKF-GKSPINDAAENQQME- 128
+G P+ +G TPLH AA + + R LL+YGG + G +P++ AA+ E
Sbjct: 201 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM 260
Query: 129 ---VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
+ + + NL + G TPLH A GH L+++G + + G +P++ A+
Sbjct: 261 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 319
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV----R 130
NL + G TPLH A GH L+++G + + G +P++ A+ +++
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKF---GKSPINDAAENQQ 187
D N K G +PLH AA +GH D V LL+ G P++ G +P+ A
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS--PNEVSSDGTTPLAIAKRLGY 389
Query: 188 MEVSTVSPVV 197
+ V+ V VV
Sbjct: 390 ISVTDVLKVV 399
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 84 TPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR----DQGVDPNL 138
TPLH A+ GH V+ LL+ G V + ++P++ AA EV N
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 139 KDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 189
K D TPLH AA GH + V+ LL + G +P++ AA +E
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 127
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 71/198 (35%), Gaps = 55/198 (27%)
Query: 4 PLFIRAVSGDVK-----CSSQA-GSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHG 57
PL + A G + S QA G++G++ L+ L L+ Q G +P K HG +
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT-PLHLVAQEGHVPVADVLIK-HGVMVD 305
Query: 58 CTCRKGES--------------TKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLR 103
T R G + + D N K G +PLH AA +GH D V LL+
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Query: 104 YGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLL 163
G PN DG TPL A G+ L
Sbjct: 366 ----------------------------NGASPNEVSSDGTTPLAIAKRLGYISVTDVL- 396
Query: 164 RYGGKLVPDKFGKSPIND 181
K+V D+ ++D
Sbjct: 397 ----KVVTDETSFVLVSD 410
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 61/138 (44%), Gaps = 32/138 (23%)
Query: 60 CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
R G+ +VR G D N D G TPLH AA RGH + V LL++G
Sbjct: 22 TRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA---------- 71
Query: 117 PINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 175
D N D G TPLH AA+ GH + V LL YG + DKFG
Sbjct: 72 ------------------DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 176 KSPINDAAENQQMEVSTV 193
K+ + + +N +++ +
Sbjct: 114 KTAFDISIDNGNEDLAEI 131
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 113 FGKSPINDAAENQQMEVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
GK + Q EVR G D N D G TPLH AA RGH + V LL++G +
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 170 -VPDKFGKSPINDAAENQQMEVSTV 193
D +G++P++ AA +E+ V
Sbjct: 74 NASDSWGRTPLHLAATVGHLEIVEV 98
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 32/139 (23%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK 115
R G+ +VR G D N D G TPLH AA RGH + V LL++G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA--------- 71
Query: 116 SPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKF 174
D N +D G TPLH AA+ GH + V LL YG + DKF
Sbjct: 72 -------------------DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Query: 175 GKSPINDAAENQQMEVSTV 193
GK+ + + +N +++ +
Sbjct: 113 GKTAFDISIDNGNEDLAEI 131
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 113 FGKSPINDAAENQQMEVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
GK + Q EVR G D N D G TPLH AA RGH + V LL++G +
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 170 -VPDKFGKSPINDAAENQQMEVSTV 193
D +G++P++ AA +E+ V
Sbjct: 74 NARDIWGRTPLHLAATVGHLEIVEV 98
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 61/138 (44%), Gaps = 32/138 (23%)
Query: 60 CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
R G+ +VR G D N D G TPLH AA RGH + V LL++G
Sbjct: 22 TRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA---------- 71
Query: 117 PINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 175
D N D G TPLH AA+ GH + V LL YG + DKFG
Sbjct: 72 ------------------DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 176 KSPINDAAENQQMEVSTV 193
K+ + + +N +++ +
Sbjct: 114 KTAFDISIDNGNEDLAEI 131
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 113 FGKSPINDAAENQQMEVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
GK + Q EVR G D N D G TPLH AA RGH + V LL++G +
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 170 -VPDKFGKSPINDAAENQQMEVSTV 193
D +G++P++ AA +E+ V
Sbjct: 74 NASDIWGRTPLHLAATVGHLEIVEV 98
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 32/139 (23%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK 115
R G+ +VR G D N D G TPLH AA H + V LL++G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA--------- 71
Query: 116 SPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKF 174
D N D DG+TPLH AA GH + V LL++G + DKF
Sbjct: 72 -------------------DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKF 112
Query: 175 GKSPINDAAENQQMEVSTV 193
GK+ + + +N +++ +
Sbjct: 113 GKTAFDISIDNGNEDLAEI 131
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
G+ +VR G D N D +G TPLH AA+ G + V LL+ G + D G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
+P++ AA + +E+ + G D N D G TPLH AA G + V LL++G +
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 170 VPDKFGKSPINDAAENQQME 189
D G + D + NQ E
Sbjct: 133 AQDALGLTAF-DISINQGQE 151
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 89 AASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRD----QGVDPNLKDGDG 143
AA+ G D VR L+ G + D G +P++ AA N Q+E+ + G D N D G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 144 ATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTV 193
TPLH AA GH + V LL++G + D+ G +P++ AA + Q+E+ V
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEV 123
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR 130
G D N D G TPLH AA GH + V LL++G + D+ G +P++ AA + Q+E+
Sbjct: 62 GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIV 121
Query: 131 D----QGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
+ G D N +D G T + ++G D L
Sbjct: 122 EVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Query: 89 AASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRD----QGVDPNLKDGDG 143
AA G D VR L+ G + DK G +P++ AA N +E+ + G D N D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 144 ATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTV 193
TPLH A GH + V LL++G + DKFGK+ + + +N +++ +
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 124
G D N D G TPLH A GH + V LL++G + DKFGK+ + + +N
Sbjct: 69 NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 123
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR 130
GV N KD G +PLH AAS G + V+ LL G ++ ++ G +P++ AA + E+
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 131 ----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
+ G +P+ KD AT +H AA++G+ + LL Y + D G +P++ A +
Sbjct: 123 VMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE 182
Query: 186 QQME 189
+++E
Sbjct: 183 ERVE 186
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 79 DGDGATPLHFAASRGHADCVRWLLRYGGKLVP----DKFGKSPINDAAENQQMEVRD--- 131
D D T LH+A S GH + V +LL+ G VP D G SP++ AA + E+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLG---VPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 132 -QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPD 172
+G N + +G TPLH+AAS+ + LL G PD
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN--PD 133
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
+G N + +G TPLH+AAS+ + LL G D + + ++ AA +++
Sbjct: 95 KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKM 154
Query: 130 RD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
N++D +G TPLH A + + L+ G + + +K K+P+ A
Sbjct: 155 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR 130
GV N KD G +PLH AAS G + V+ LL G ++ ++ G +P++ AA + E+
Sbjct: 64 GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIA 123
Query: 131 ----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
+ G +P+ KD AT +H AA++G+ + LL Y + D G +P++ A +
Sbjct: 124 VMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE 183
Query: 186 QQME 189
+++E
Sbjct: 184 ERVE 187
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 79 DGDGATPLHFAASRGHADCVRWLLRYGGKLVP----DKFGKSPINDAAENQQMEVRD--- 131
D D T LH+A S GH + V +LL+ G VP D G SP++ AA + E+
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLG---VPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 132 -QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPD 172
+G N + +G TPLH+AAS+ + LL G PD
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN--PD 134
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
+G N + +G TPLH+AAS+ + LL G D + + ++ AA +++
Sbjct: 96 KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKM 155
Query: 130 RD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
N++D +G TPLH A + + L+ G + + +K K+P+ A
Sbjct: 156 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 32/139 (23%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK 115
R G+ +VR G D N KD G TPL+ A + GH + V LL+
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK------------ 68
Query: 116 SPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKF 174
G D N D G TPLH AA GH + LL++G + DKF
Sbjct: 69 ----------------NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF 112
Query: 175 GKSPINDAAENQQMEVSTV 193
GK+ + + N +++ +
Sbjct: 113 GKTAFDISIGNGNEDLAEI 131
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 113 FGKSPINDAAENQQMEVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
GK + A Q EVR G D N KD G TPL+ A + GH + V LL+ G +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73
Query: 170 -VPDKFGKSPINDAAENQQMEVSTV 193
D G +P++ AA +E++ V
Sbjct: 74 NAVDAIGFTPLHLAAFIGHLEIAEV 98
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRD----QGVD 135
DG TPLH AA GHA+ V+ LL G + K G +P++ AA+N E+ +G D
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
N + DG TP H A GH + V+ L G + +G S
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
+G D N + DG TP H A GH + V+ L G + +G S
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR 130
GV N KD G +PLH AAS G + V+ LL G + ++ G +P++ AA + E+
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 131 ----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
+ G +P+ KD AT +H AA++G+ V LL Y + D G +P++ A +
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
Query: 186 QQME 189
+++E
Sbjct: 183 ERVE 186
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 79 DGDGATPLHFAASRGHADCVRWLLRYGGKLVP----DKFGKSPINDAAENQQMEVRD--- 131
D D T LH+A S GH + V +LL+ G VP D G SP++ AA + E+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLG---VPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 132 -QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPD 172
+G N + +G TPLH+AAS+ + LL G PD
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN--PD 133
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
+G N + +G TPLH+AAS+ + LL G D + + ++ AA +++
Sbjct: 95 KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKM 154
Query: 130 RD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
N++D +G TPLH A + ++L+ G + + +K K+P+ A
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR 130
GV N KD G +PLH AAS G + V+ LL G + ++ G +P++ AA + E+
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 131 ----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
+ G +P+ KD AT +H AA++G+ V LL Y + D G +P++ A +
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
Query: 186 QQME 189
+++E
Sbjct: 183 ERVE 186
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 79 DGDGATPLHFAASRGHADCVRWLLRYGGKLVP----DKFGKSPINDAAENQQMEVRD--- 131
D D T LH+A S GH + V +LL+ G VP D G SP++ AA E+
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLG---VPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 132 -QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPD 172
+G N + +G TPLH+AAS+ + LL G PD
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN--PD 133
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
+G N + +G TPLH+AAS+ + LL G D + + ++ AA +++
Sbjct: 95 KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKM 154
Query: 130 RD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
N++D +G TPLH A + ++L+ G + + +K K+P+ A
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 58 CTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS- 116
C + KV G+ N+ DG++PLH AA G AD + LL++G ++
Sbjct: 62 CAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAV 121
Query: 117 PINDAAENQQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
P++ A + +V D PN KD G TPL +A S GH + V LL++G +
Sbjct: 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASI 178
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 48 EAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK 107
EA +HG H + R + QG N+ D +PLH A GH CV+ LL++G +
Sbjct: 9 EAAIHG--HQLSLRN-----LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 108 L--VPDKFGKSPINDAAENQQMEVRD------QGVDPNLKDGDGATPLHFAASRGHADCV 159
+ V + +P+ +A + + + V P + D A+P+H AA RGH +CV
Sbjct: 62 VNGVTADW-HTPLFNACVSGSWDCVNLLLQHGASVQP---ESDLASPIHEAARRGHVECV 117
Query: 160 RWLLRYGGKLVPDKFGK--SPINDAAENQQ 187
L+ YGG + K +P+ A ENQQ
Sbjct: 118 NSLIAYGGN-IDHKISHLGTPLYLACENQQ 146
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
G N D TPL A G DCV LL++G + P+ SPI++AA +E
Sbjct: 58 HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECV 117
Query: 131 DQ----GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQ 186
+ G + + K TPL+ A CV+ LL G + K SP++ A
Sbjct: 118 NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTA 177
Query: 187 QMEVSTV 193
E++ +
Sbjct: 178 SEELACL 184
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 19/161 (11%)
Query: 31 NCLSLLVQHG-----TLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATP 85
+C+ +L++HG D+H + C + + Q + D A+P
Sbjct: 50 SCVKILLKHGAQVNGVTADWHTPL-----FNACVSGSWDCVNLLLQHGASVQPESDLASP 104
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGK--SPINDAAENQQ----MEVRDQGVDPNLK 139
+H AA RGH +CV L+ YGG + K +P+ A ENQQ ++ + G D N
Sbjct: 105 IHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG 163
Query: 140 DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPI 179
G +PLH A + L+ +G + GK P+
Sbjct: 164 KGQD-SPLHAVARTASEELACLLMDFGADTQAKNAEGKRPV 203
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 84 TPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRDQ------GVDP 136
+PLH AA GH D L++ G + + ++P+ +AAEN +E VDP
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 137 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQMEV 190
KD +G+T LH AA +GH + V++LL G V D G +P+ A E + +++
Sbjct: 73 --KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL 126
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 73 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQME-- 128
VDP KD +G+T LH AA +GH + V++LL G V D G +P+ A E + ++
Sbjct: 70 VDP--KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 129 --VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
+ +G D N++D + LH+AA G D LL L + G SP++ AA
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA 185
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 82 GATPLHFAASRGHADCVRWLL-RYGGKLVPDKFGKSPINDAAENQQM 127
G +PLH AA DCV L R + +K G++P+ A+ N Q+
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 48 EAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK 107
EA +HG H + R + QG N+ D +PLH A GH CV+ LL++G +
Sbjct: 65 EAAIHG--HQLSLRN-----LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 108 L--VPDKFGKSPINDAAENQQMEVRD------QGVDPNLKDGDGATPLHFAASRGHADCV 159
+ V + +P+ +A + + + V P + D A+P+H AA RGH +CV
Sbjct: 118 VNGVTADW-HTPLFNACVSGSWDCVNLLLQHGASVQP---ESDLASPIHEAARRGHVECV 173
Query: 160 RWLLRYGGKLVPDKFGK--SPINDAAENQQ 187
L+ YGG + K +P+ A ENQQ
Sbjct: 174 NSLIAYGGN-IDHKISHLGTPLYLACENQQ 202
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 83/201 (41%), Gaps = 16/201 (7%)
Query: 1 MAHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYH----EEAKLHGKLH 56
+++PL AVS D +A G +L L N +S + H EA L G L
Sbjct: 48 LSNPLMGDAVS-DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHL- 105
Query: 57 GCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
+C K + G N D TPL A G DCV LL++G + P+ S
Sbjct: 106 --SCVK----ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLAS 159
Query: 117 PINDAAENQQMEVRDQ----GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPD 172
PI++AA +E + G + + K TPL+ A CV+ LL G +
Sbjct: 160 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG 219
Query: 173 KFGKSPINDAAENQQMEVSTV 193
K SP++ E++ +
Sbjct: 220 KGQDSPLHAVVRTASEELACL 240
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 19/161 (11%)
Query: 31 NCLSLLVQHG-----TLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATP 85
+C+ +L++HG D+H + C + + Q + D A+P
Sbjct: 106 SCVKILLKHGAQVNGVTADWHTPL-----FNACVSGSWDCVNLLLQHGASVQPESDLASP 160
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGK--SPINDAAENQQ----MEVRDQGVDPNLK 139
+H AA RGH +CV L+ YGG + K +P+ A ENQQ ++ + G D N
Sbjct: 161 IHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG 219
Query: 140 DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPI 179
G +PLH + L+ +G + GK P+
Sbjct: 220 KGQD-SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPV 259
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 60 CRKGESTKVRDQGVD--PNLKDGDGATPLHFAASRGHADCVRWLLRYG-GKLVPDKFGKS 116
R G+ +VR + P D G +PLH AA GH LLR G + K ++
Sbjct: 10 ARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRT 69
Query: 117 PINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VP 171
P++ AA + + G D N KD T LH+A H + V L++YG +
Sbjct: 70 PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129
Query: 172 DKFGKSPINDAAENQQMEVSTV 193
KF K+ + + +N +++ +
Sbjct: 130 SKFCKTAFDISIDNGNEDLAEI 151
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 89 AASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD----QGVDPNLKDGDGA 144
AA G D VR L+ G D G SP++ AA+ + GV + +
Sbjct: 9 AARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR 68
Query: 145 TPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
TPLH AAS GHA+ V LL++G + D + ++ A E+ EV
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV 115
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 57/138 (41%), Gaps = 32/138 (23%)
Query: 60 CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
R G+ +VR G D N D G TPLH AA GH + V LL+
Sbjct: 22 ARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK------------- 68
Query: 117 PINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 175
G D N G TPLH AA H + V LL++G + DKFG
Sbjct: 69 ---------------NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
Query: 176 KSPINDAAENQQMEVSTV 193
K+ + + +N +++ +
Sbjct: 114 KTAFDISIDNGNEDLAEI 131
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 113 FGKSPINDAAENQQMEVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
GK + A Q EVR G D N D G TPLH AA GH + V LL+ G +
Sbjct: 14 LGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV 73
Query: 170 -VPDKFGKSPINDAAENQQMEVSTV 193
G++P++ AA +E+ V
Sbjct: 74 NATGNTGRTPLHLAAWADHLEIVEV 98
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 51 LHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 109
L + G T E K QG PN++D G +P+H AA G D ++ L+ +G + V
Sbjct: 46 LQVMMFGSTAIALELLK---QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV 102
Query: 110 PDKFGKSPINDAAENQQMEVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
PD G PI+ A + V D + +D G TPL A RG D V L
Sbjct: 103 PDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 89 AASRGHADCVRWLLRYGGKLV-PD---KFGKSPIND---AAENQQMEVRDQGVDPNLKDG 141
AA+RG VR LL +LV PD +FGK+ + + +E+ QG PN++D
Sbjct: 15 AAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDT 72
Query: 142 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
G +P+H AA G D ++ L+ +G + VPD G PI+ A +
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 117
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 47 EEAKLHGKLHGCTCRKGESTKVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLL 102
EE + +L G R G+ +VR + V P+ + G T L A + L
Sbjct: 4 EEVRAGDRLSGAAAR-GDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLK 62
Query: 103 RYGGKLVPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADC 158
+ V D G SP++DAA ++ + + G D N+ DG GA P+H A GH
Sbjct: 63 QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 122
Query: 159 VRWL 162
V +L
Sbjct: 123 VSFL 126
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 113 FGKSPINDAAENQQMEVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
GK + A Q EVR G D N KD DG TPLH AA GH + V LL+ G +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 170 -VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 62 NAQDKFGKTAFDISIDNGNEDLAEI 86
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G+ +VR G D N KD DG TPLH AA GH + V LL+ G + DKFG
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 115 KSPINDAAEN 124
K+ + + +N
Sbjct: 69 KTAFDISIDN 78
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
QG PN++D G +P+H AA G D ++ L+ +G + VPD G PI+ A + V
Sbjct: 57 QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 116
Query: 130 RD---QGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
D + +D G TPL A RG D V L
Sbjct: 117 VSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 89 AASRGHADCVRWLLRYGGKLV-PD---KFGKSPIND---AAENQQMEVRDQGVDPNLKDG 141
AA+RG VR LL +LV PD +FGK+ + + +E+ QG PN++D
Sbjct: 9 AAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDT 66
Query: 142 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
G +P+H AA G D ++ L+ +G + VPD G PI+ A + V
Sbjct: 67 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 116
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 65 STKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK---SPINDA 121
+T++ + V N D +G TPL +AA+ G V +LL+ G P GK S ++ A
Sbjct: 18 ATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD--PQLLGKGRESALSLA 74
Query: 122 AENQQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
++ D GVD N D +G TPL +A H CV+ LL G
Sbjct: 75 CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 60 CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 106
C KG + V+ D GVD N D +G TPL +A H CV+ LL G
Sbjct: 75 CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 65 STKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK---SPINDA 121
+T++ + V N D +G TPL +AA+ G V +LL+ G P GK S ++ A
Sbjct: 36 ATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD--PQLLGKGRESALSLA 92
Query: 122 AENQQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
++ D GVD N D +G TPL +A H CV+ LL G
Sbjct: 93 CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 60 CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 106
C KG + V+ D GVD N D +G TPL +A H CV+ LL G
Sbjct: 93 CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 65 STKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK---SPINDA 121
+T++ + V N D +G TPL +AA+ G V +LL+ G P GK S ++ A
Sbjct: 20 ATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD--PQLLGKGRESALSLA 76
Query: 122 AENQQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
++ D GVD N D +G TPL +A H CV+ LL G
Sbjct: 77 CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 60 CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 106
C KG + V+ D GVD N D +G TPL +A H CV+ LL G
Sbjct: 77 CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 16/146 (10%)
Query: 67 KVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFG----KSPINDAA 122
++ + G D D + T LH+AA D V++ + G + D+ G +P++ A
Sbjct: 27 ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA--IVDQLGGDLNSTPLHWAT 84
Query: 123 ENQQMEVRDQ----GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKS 177
+ + Q G DP+L DG+G + +H AA GH V +L+ G + + D+ G +
Sbjct: 85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMT 144
Query: 178 PINDAAENQQMEVSTVSPVVRRLLTI 203
P+ AA +V P R LLT
Sbjct: 145 PLMWAA----YRTHSVDP-TRLLLTF 165
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 83 ATPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQMEVRD----QGVDPN 137
+TPLH+A +GH V L++YG + D G S I+ AA+ + +G D +
Sbjct: 77 STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 138 LKDGDGATPLHFAASRGHA-DCVRWLLRYGGKL-VPDKFGKSP 178
+ D +G TPL +AA R H+ D R LL + + + DK+ K+
Sbjct: 137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNT 179
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 57 GCTC-----RKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHA-DCVRWLLRYGGK 107
GC+C + G ++ V +G D ++ D +G TPL +AA R H+ D R LL +
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168
Query: 108 L-VPDKFGKSP 117
+ + DK+ K+
Sbjct: 169 VNLGDKYHKNT 179
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
Q V+ +G +TPLHFAA V +LL++G + DK G P+++A EV
Sbjct: 31 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV 90
Query: 130 RD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPIN 180
+ G N+ D TPLH AA++G + + LL++G ++ G +P++
Sbjct: 91 AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
Q V+ +G +TPLHFAA V +LL++G + DK G P+++A EV
Sbjct: 33 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV 92
Query: 130 RD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPIN 180
+ G N+ D TPLH AA++G + + LL++G ++ G +P++
Sbjct: 93 AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 148
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
Q V+ +G +TPLHFAA V +LL++G + DK G P+++A EV
Sbjct: 35 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV 94
Query: 130 RD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
+ G N+ D TPLH AA++G + + LL++G
Sbjct: 95 AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
G D + KD G PLH A S GH + L+++G + V D + +P+++AA + E+
Sbjct: 68 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 127
Query: 130 ----RDQGVDPNLKDGDGATPL 147
G DP K+ DG TPL
Sbjct: 128 CKLLLQHGADPTKKNRDGNTPL 149
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 74/199 (37%), Gaps = 46/199 (23%)
Query: 19 QAGSMGDRLMLSNCLSLLVQHGTLPDYHEEA------KLHGKLHGCTCRKGESTKVRDQG 72
QA D + L+L + + P HE A LH K RK + + +G
Sbjct: 184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPK------RKQVAELLLRKG 237
Query: 73 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQ 132
+ N K+ D TPLH AA R H D + L ++G K+
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM------------------------ 273
Query: 133 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK---LVPDKFGKSPINDAAENQQME 189
N D G T LH AA GH R LL YG + F + + + A Q +
Sbjct: 274 ----NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILS 329
Query: 190 VST---VSPVVRRLLTIQK 205
ST S V RLL K
Sbjct: 330 ESTPMRTSDVDYRLLEASK 348
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 73 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRD 131
V+ + DG +TPLH AA V+ LL++G + DK G P+++A EV +
Sbjct: 49 VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108
Query: 132 ----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDA 182
G N D TPLH AAS+ + LL +G + + GKS ++ A
Sbjct: 109 LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
G D + KD G PLH A S GH + LL++G + D + +P+++AA ++EV
Sbjct: 80 HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEV 139
Query: 130 ----RDQGVDPNLKDGDGATPLHFA 150
G DP L + G + + A
Sbjct: 140 CSLLLSHGADPTLVNCHGKSAVDMA 164
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 30/126 (23%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
G DPN+KD G TPLH A + GH V LL++ K+ +N
Sbjct: 32 NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH----------KALVNTTGYQND---- 77
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG-KLVPDKFGKSPINDAAENQQME 189
+PLH AA GH D V+ LL YG + + FG P+ D +++ M+
Sbjct: 78 --------------SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV-DYTDDESMK 122
Query: 190 VSTVSP 195
+ P
Sbjct: 123 SLLLLP 128
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 113 FGKSPINDAAENQQMEVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
GK + A Q EVR G D KD +G+TPLH AA GH + V+ LL G +
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 170 -VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 84 XAQDKFGKTAFDISIDNGNEDLAEI 108
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G+ +VR G D KD +G+TPLH AA GH + V+ LL G + DKFG
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 115 KSPINDAAEN 124
K+ + + +N
Sbjct: 91 KTAFDISIDN 100
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 113 FGKSPINDAAENQQMEVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
GK + A Q EVR G D KD +G+TPLH AA GH + V+ LL G +
Sbjct: 6 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
Query: 170 -VPDKFGKSPINDAAENQQMEVSTV 193
DKFGK+ + + +N +++ +
Sbjct: 66 NAQDKFGKTAFDISIDNGNEDLAEI 90
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 59 TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
R G+ +VR G D KD +G+TPLH AA GH + V+ LL G + DKFG
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 115 KSPINDAAEN 124
K+ + + +N
Sbjct: 73 KTAFDISIDN 82
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 11/150 (7%)
Query: 29 LSNCLSLLVQHGTLP---DYHEE--AKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGA 83
L + + LLV G P D H + A L + TC + +D ++ DG
Sbjct: 58 LPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL 117
Query: 84 TPLHFAASRGHADCVRWLLRYGGKL--VPDKFGKSPINDAAENQQME----VRDQGVDPN 137
T LH A + + V+ LL G + V K G+SP+ A EN + + G + N
Sbjct: 118 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 177
Query: 138 LKDGDGATPLHFAASRGHADCVRWLLRYGG 167
+ G++ LH A+ RG VR L+R G
Sbjct: 178 AQMYSGSSALHSASGRGLLPLVRTLVRSGA 207
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 84 TPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQ----MEVRDQG----V 134
TPLH A VR L+ G + D+ G++ + A E++ + D +
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107
Query: 135 DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL--VPDKFGKSPINDAAENQQMEV 190
D ++ DG T LH A + + V+ LL G + V K G+SP+ A EN + +
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM 165
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 79 DGDGATPLHFAASRGHADCVRWLL---RYGGKL--VPDKFGKSPINDAAENQQMEV---- 129
D DG TPLH A +G+ V L+ + GG+ + + ++P++ A V
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLL 163
G P D G T H A C+R LL
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALL 99
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 89 AASRGHADCVRWLLRYGGKLV-PD---KFGKSPIND---AAENQQMEVRDQGVDPNLKDG 141
AA+RG VR LL +LV PD +FGK+ + + +E+ QG PN++D
Sbjct: 15 AAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDA 72
Query: 142 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA-ENQQMEVSTVSP 195
G +P+H AA G D ++ L+ +G + D G PI+ A E VS ++P
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA-ENQQME 128
QG PN++D G +P+H AA G D ++ L+ +G + D G PI+ A E
Sbjct: 63 QGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSV 122
Query: 129 VRDQGVDPNL--KDGDGATPLHFAASRGHADCVRWLLRYGGKLVP 171
V + +L +D G TPL A RG + + L G ++P
Sbjct: 123 VSFLAPESDLHHRDASGLTPLELARQRGAQNLMDIL--QGHMMIP 165
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 47 EEAKLHGKLHGCTCRKGESTKVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLL 102
EE + +L G R G+ +VR + V P+ + G T L A + L
Sbjct: 4 EEVCVGDRLSGAAAR-GDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLK 62
Query: 103 RYGGKLVPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADC 158
+ V D G SP++DAA ++ + + G D N D G+ P+H A GH+
Sbjct: 63 QGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSV 122
Query: 159 VRWL 162
V +L
Sbjct: 123 VSFL 126
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQMEV----R 130
N D G TPL +A++ G + VR+LL +G + K +S ++ A+ ++
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDK-FGKSPINDAA 183
++ VD N+ D +G TPL +A H CV LL G L + G +P++ A
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDK-FGKSPINDAA 122
++ VD N+ D +G TPL +A H CV LL G L + G +P++ A
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 89 AASRGHADCVRWLLRYGGKLV-PD---KFGKSPIND---AAENQQMEVRDQGVDPNLKDG 141
AA+RG VR LL +LV PD +FGK+ + + +E+ QG PN++D
Sbjct: 17 AAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDA 74
Query: 142 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA-ENQQMEVSTVSP 195
G +P+H AA G D ++ L+ +G + D G PI+ A E VS ++P
Sbjct: 75 SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA-ENQQME 128
QG PN++D G +P+H AA G D ++ L+ +G + D G PI+ A E
Sbjct: 65 QGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSV 124
Query: 129 VRDQGVDPNL--KDGDGATPLHFAASRGHADCVRWLLRYGGKLVP 171
V + +L +D G TPL A RG + + L G ++P
Sbjct: 125 VSFLAPESDLHHRDASGLTPLELARQRGAQNLMDIL--QGHMMIP 167
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 47 EEAKLHGKLHGCTCRKGESTKVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLL 102
EE + +L G R G+ +VR + V P+ + G T L A + L
Sbjct: 6 EEVCVGDRLSGAAAR-GDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLK 64
Query: 103 RYGGKLVPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADC 158
+ V D G SP++DAA ++ + + G D N D G+ P+H A GH+
Sbjct: 65 QGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSV 124
Query: 159 VRWL 162
V +L
Sbjct: 125 VSFL 128
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQMEV----R 130
N D G TPL +A++ G + VR+LL +G + K +S ++ A+ ++
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDK-FGKSPINDAA 183
++ VD N+ D +G TPL +A H CV LL G L + G +P++ A
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDK-FGKSPINDAA 122
++ VD N+ D +G TPL +A H CV LL G L + G +P++ A
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 57 GCTCRKGESTK-VRDQGVDPNLKD--GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDK 112
C+ E K + D+ + P+L G T LH A + + ++L+ G + + DK
Sbjct: 79 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Query: 113 FGKSPINDAAENQQMEVRDQ-----GVDPNLKDGDGATPLHFAASRGHADCVRWLL-RYG 166
F + P++ AA +++ + N +D G TPL A + GH D L+ +YG
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Query: 167 GK--LVPDKFGKSPINDAAENQQMEVSTVSPVVRRL 200
+ LV +K K+ D A N+Q++ ++ VV +L
Sbjct: 199 AEYDLVDNKGAKA--EDVALNEQVKKFFLNNVVDKL 232
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 59 TCRKGESTKVRDQ-GVDPNL---KDGDGATPLHFAASRGHADCVRWLLRYGGKL----VP 110
C + E KV++ P+L KD DG PLH++ S + +LL + P
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 111 DKFGKSPINDAAENQQMEV----RDQGVDPNLKD--GDGATPLHFAASRGHADCVRWLLR 164
D G +P + A +EV D+ + P+L G T LH A + + ++L+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 165 YGGKL-VPDKFGKSPINDAA 183
G + + DKF + P++ AA
Sbjct: 129 NGASVRIKDKFNQIPLHRAA 148
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 57 GCTCRKGESTK-VRDQGVDPNLKD--GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDK 112
C+ E K + D+ + P+L G T LH A + + ++L+ G + + DK
Sbjct: 79 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Query: 113 FGKSPINDAAENQQMEVRDQ-----GVDPNLKDGDGATPLHFAASRGHADCVRWLL-RYG 166
F + P++ AA +++ + N +D G TPL A + GH D L+ +YG
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Query: 167 GK--LVPDKFGKSPINDAAENQQMEVSTVSPVV 197
+ LV +K K+ D A N+Q++ ++ VV
Sbjct: 199 AEYDLVDNKGAKA--EDVALNEQVKKFFLNNVV 229
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 59 TCRKGESTKVRDQ-GVDPNL---KDGDGATPLHFAASRGHADCVRWLLRYGGKL----VP 110
C + E KV++ P+L KD DG PLH++ S + +LL + P
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 111 DKFGKSPINDAAENQQMEV----RDQGVDPNLK--DGDGATPLHFAASRGHADCVRWLLR 164
D G +P + A +EV D+ + P+L G T LH A + + ++L+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 165 YGGKL-VPDKFGKSPINDAA 183
G + + DKF + P++ AA
Sbjct: 129 NGASVRIKDKFNQIPLHRAA 148
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 59 TCRKGESTKVRDQ-GVDPNL---KDGDGATPLHFAASRGHADCVRWLLRYGGKL----VP 110
C + E KV++ P+L KD DG PLH++ S + +LL + P
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 111 DKFGKSPINDAAENQQMEV----RDQGVDPNLK--DGDGATPLHFAASRGHADCVRWLLR 164
D G +P + A +EV D+ + P+L G T LH A + + ++L+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 165 YGGKL-VPDKFGKSPINDAA 183
G + + DKF + P++ AA
Sbjct: 129 NGASVRIKDKFNQIPLHRAA 148
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 57 GCTCRKGESTK-VRDQGVDPNLKD--GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDK 112
C+ E K + D+ + P+L G T LH A + + ++L+ G + + DK
Sbjct: 79 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Query: 113 FGKSPINDAAENQQMEVRDQ-----GVDPNLKDGDGATPLHFAASRGHADCVRWLL-RYG 166
F + P++ AA +++ + N +D G TPL A + GH D L+ +YG
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Query: 167 GK--LVPDKFGKSPINDAAENQQME 189
+ LV +K K+ D A N+Q++
Sbjct: 199 AEYDLVDNKGAKA--EDVALNEQVK 221
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 28/96 (29%)
Query: 74 DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQG 133
DP+L + +G T LH A GH + V++L+++ G
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQF----------------------------G 93
Query: 134 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
V+ N D DG TPLH AAS + ++L+ G +
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 135 DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
DP+L + +G T LH A GH + V++L+++G + D G +P++ AA ++V
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 55 LHGCTCR-KGESTKVRDQ-GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 108
LH C E K Q GV+ N D DG TPLH AAS + ++L+ G +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 28/96 (29%)
Query: 74 DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQG 133
DP+L + +G T LH A GH + V++L+++ G
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQF----------------------------G 93
Query: 134 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
V+ N D DG TPLH AAS + ++L+ G +
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 135 DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
DP+L + +G T LH A GH + V++L+++G + D G +P++ AA ++V
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 55 LHGCTCR-KGESTKVRDQ-GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 108
LH C E K Q GV+ N D DG TPLH AAS + ++L+ G +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 28/95 (29%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
+G +P+LKD G +H AA G D ++ LL ENQ
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLL--------------------ENQ----- 93
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
D N++D +G PLH AA GH V +L+++
Sbjct: 94 ---ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 99 RWLLRYGGKLVPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRG 154
R LLR + D+ G + I+DAA Q++ + + D N++D +G PLH AA G
Sbjct: 55 RLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 155 HADCVRWLLRY 165
H V +L+++
Sbjct: 115 HLRVVEFLVKH 125
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 74 DPNLKDGDGATPLHFAASRGHADCVRWLLRY 104
D N++D +G PLH AA GH V +L+++
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 20/202 (9%)
Query: 4 PLFIRAVSG-------DVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLH 56
PL I AV G D++ + + + ++S+ L+ + D E LH L
Sbjct: 5 PLMIAAVRGGGLDTGEDIENNEDSTAQ----VISDLLAQGAELNATMDKTGETSLH--LA 58
Query: 57 GCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKF--G 114
R + ++ D G D N +D G TPLH A + + LLR + + G
Sbjct: 59 ARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDG 118
Query: 115 KSPINDAA----ENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLL-RYGGKL 169
+P+ AA E ++ D N D G T LH+AA+ + + V LL + +
Sbjct: 119 TTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD 178
Query: 170 VPDKFGKSPINDAAENQQMEVS 191
D ++P+ AA E S
Sbjct: 179 AQDDKDETPLFLAAREGSYEAS 200
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 41/168 (24%)
Query: 19 QAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRD---QGVDP 75
+ ++ RL L N + L Q D H + LH CR+G S V +G
Sbjct: 15 EGNAVAVRLWLDNTENDLNQ----GDDHGFSPLH-----WACREGRSAVVEMLIMRGARI 65
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVD 135
N+ + TPLH AAS GH D V+ LL+Y K+ IN E+
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQY----------KADINAVNEH----------- 104
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
G PLH+A G L+ G + + +K+G+ P++ A
Sbjct: 105 -------GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 41/168 (24%)
Query: 19 QAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRD---QGVDP 75
+ ++ RL L N + L Q D H + LH CR+G S V +G
Sbjct: 10 EGNAVAVRLWLDNTENDLNQ----GDDHGFSPLH-----WACREGRSAVVEMLIMRGARI 60
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVD 135
N+ + TPLH AAS GH D V+ LL+Y K+ IN E+
Sbjct: 61 NVMNRGDDTPLHLAASHGHRDIVQKLLQY----------KADINAVNEH----------- 99
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
G PLH+A G L+ G + + +K+G+ P++ A
Sbjct: 100 -------GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA--AENQ---QMEV 129
N D GAT LH AA+ +D + LL + D G++P++ A A+ Q Q+ +
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 130 RDQGVDPNLKDGDGATPLHFAA 151
R++ D + + DG TPL AA
Sbjct: 111 RNRATDLDARMHDGTTPLILAA 132
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 7/146 (4%)
Query: 55 LHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKF- 113
L R + ++ + D N++D G TPLH A S + L+R + +
Sbjct: 63 LAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122
Query: 114 -GKSPINDAA----ENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG- 167
G +P+ AA E ++ + D N D G + LH+AA+ + D LL+ G
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182
Query: 168 KLVPDKFGKSPINDAAENQQMEVSTV 193
K + + ++P+ AA E + V
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKV 208
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 28/95 (29%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
+G +P+LKD G +H AA G D ++ LL +
Sbjct: 59 RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQ------------------------- 93
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
D N++D +G PLH AA GH V +L+++
Sbjct: 94 ---ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 35/148 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPIN-----DAAE 123
+ G + N D +G PLH AAS G+ D +L+ G + + G +P++ E
Sbjct: 94 ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153
Query: 124 NQQMEVRDQGVDPN----------LKDG----------------DGATPLHFAASRGHAD 157
Q EV QGVD L+D G T LH AA++G+ +
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213
Query: 158 CVRWLL--RYGGKLVPDKFGKSPINDAA 183
++ L+ RY + D G +P++ AA
Sbjct: 214 VLKLLIQARYDVN-IKDYDGWTPLHAAA 240
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 32/132 (24%)
Query: 53 GKLHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV 109
G + C G++ +V ++G D N + DG T LH A + D V++L+ G +
Sbjct: 41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI- 99
Query: 110 PDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
N D +G PLH AAS G+ D +L+ G +
Sbjct: 100 ---------------------------NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132
Query: 170 -VPDKFGKSPIN 180
+ G +P++
Sbjct: 133 GAVNSEGDTPLD 144
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 32/85 (37%)
Query: 82 GATPLHFAASRGHADCVRWLL--RYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLK 139
G T LH AA++G+ + ++ L+ RY D N+K
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARY------------------------------DVNIK 228
Query: 140 DGDGATPLHFAASRGHADCVRWLLR 164
D DG TPLH AA G + R L+
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVE 253
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 74 DPNLKDGDGATPLHFAASRGHADCVRWLLR 103
D N+KD DG TPLH AA G + R L+
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVE 253
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 28/95 (29%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
+G +P+LKD G +H AA G D ++ LL +
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ------------------------- 93
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
D N++D +G PLH AA GH V +L+++
Sbjct: 94 ---ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 28/95 (29%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
+G +P+LKD G +H AA G D ++ LL +
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA------------------------ 94
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
D N++D +G PLH AA GH V +L+++
Sbjct: 95 ----DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 82 GATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAA---ENQQME------VR 130
G L AA +GH D V+ LL G + + + FG + + +A E Q+ +
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
+ G D ++KD G T + +A +G+ + + L +Y
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 104
+ G D ++KD G T + +A +G+ + + L +Y
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 72 GVDPNLKDGDGA-TPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQMEV 129
G + N ++ +G TPLH A D V LLR+G ++ K G +P AA +++
Sbjct: 28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKL 87
Query: 130 ----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG------KLVPD-----KF 174
+G D N D G T AA G +++L + G K D K
Sbjct: 88 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147
Query: 175 GKSPINDAAENQQMEVSTV 193
G + + DAAE +EV +
Sbjct: 148 GATALMDAAEKGHVEVLKI 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 15/131 (11%)
Query: 48 EAKLHGKLHGCTC--RKGESTKVRDQGVD--PNLKDGDGATPLHFAASRGHADCVRWLLR 103
EA ++GK+ ++G + +R + + L+ G GAT L AA +GH + ++ LL
Sbjct: 111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG-GATALMDAAEKGHVEVLKILLD 169
Query: 104 YGGKLVP--DKFGKSPINDA---AENQQME-----VRDQGVDPNLKDGDGATPLHFAASR 153
G V D G++ + A +++ +E + D G D N++ G TPL A +
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229
Query: 154 GHADCVRWLLR 164
H V+ LL
Sbjct: 230 KHLGLVQRLLE 240
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP-DKFGKSPINDAAENQQME-- 128
G DP L+ +GATP AA G ++ L G + D +G + +AA +++
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121
Query: 129 --VRDQGVDPNLKDGD----------GATPLHFAASRGHADCVRWLLRYGGKLVP--DKF 174
+ +G + NL+ GAT L AA +GH + ++ LL G V D
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181
Query: 175 GKSPI 179
G++ +
Sbjct: 182 GRNAL 186
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 72 GVDPNLKDGDGA-TPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQMEV 129
G + N ++ +G TPLH A D V LLR+G ++ K G +P AA +++
Sbjct: 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKL 107
Query: 130 ----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG------KLVPD-----KF 174
+G D N D G T AA G +++L + G K D K
Sbjct: 108 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 167
Query: 175 GKSPINDAAENQQMEVSTV 193
G + + DAAE +EV +
Sbjct: 168 GATALMDAAEKGHVEVLKI 186
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 48 EAKLHGKLHGCTC--RKGESTKVRDQGVD--PNLKDGDGATPLHFAASRGHADCVRWLLR 103
EA ++GK+ ++G + +R + + L+ G GAT L AA +GH + ++ LL
Sbjct: 131 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG-GATALMDAAEKGHVEVLKILLD 189
Query: 104 YGGKLVP--DKFGKSPINDA---AENQQME-----VRDQGVDPNLKDGDGATPLHFAASR 153
G V D G++ + A +++ +E + D G D N++ G TPL A +
Sbjct: 190 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 249
Query: 154 GHADCVRWLL 163
H V+ LL
Sbjct: 250 KHLGLVQRLL 259
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP-DKFGKSPINDAAENQQME- 128
G DP L+ +GATP AA G ++ L G + D +G + +AA +++
Sbjct: 81 HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 140
Query: 129 ---VRDQGVDPNLKDGD----------GATPLHFAASRGHADCVRWLLRYGGKLVP--DK 173
+ +G + NL+ GAT L AA +GH + ++ LL G V D
Sbjct: 141 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 200
Query: 174 FGKSPI 179
G++ +
Sbjct: 201 MGRNAL 206
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 114 GKSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
G+ P++ AA+ Q+E+ + +G D N D TPL A GH CV+ LL G
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA-- 97
Query: 170 VPDKFGKSP----INDAAENQQME 189
DK K P +A +NQ ++
Sbjct: 98 --DKTVKGPDGLTAFEATDNQAIK 119
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSP----INDAAENQQ 126
+G D N D TPL A GH CV+ LL G DK K P +A +NQ
Sbjct: 62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA----DKTVKGPDGLTAFEATDNQA 117
Query: 127 MEVRDQ 132
++ Q
Sbjct: 118 IKALLQ 123
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 128 EVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
EV+D +G D N G PLH+AA G + + +LL G + PDK +P+ A
Sbjct: 22 EVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 114 GKSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
G+ P++ AA+ Q+E+ + +G D N D TPL A GH CV+ LL G
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA-- 92
Query: 170 VPDKFGKSPIN----DAAENQQME 189
DK K P +A +NQ ++
Sbjct: 93 --DKTVKGPDGLTALEATDNQAIK 114
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 128 EVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
EV+D +G D N G PLH+AA G + + +LL G + PDK +P+ A
Sbjct: 17 EVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV 76
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPIN----DAAENQQ 126
+G D N D TPL A GH CV+ LL G DK K P +A +NQ
Sbjct: 57 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA----DKTVKGPDGLTALEATDNQA 112
Query: 127 MEVRDQ 132
++ Q
Sbjct: 113 IKALLQ 118
>pdb|1F3B|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
pdb|1F3B|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
Length = 222
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 82 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSP 117
G LH+ +RG +C+RWLL G +KF +SP
Sbjct: 2 GKPVLHYFNARGRMECIRWLLAAAGVEFEEKFIQSP 37
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 143 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSP 178
G LH+ +RG +C+RWLL G +KF +SP
Sbjct: 2 GKPVLHYFNARGRMECIRWLLAAAGVEFEEKFIQSP 37
>pdb|1F3A|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Gsh
pdb|1F3A|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Gsh
Length = 222
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 82 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSP 117
G LH+ +RG +C+RWLL G +KF +SP
Sbjct: 2 GKPVLHYFNARGRMECIRWLLAAAGVEFEEKFIQSP 37
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 143 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSP 178
G LH+ +RG +C+RWLL G +KF +SP
Sbjct: 2 GKPVLHYFNARGRMECIRWLLAAAGVEFEEKFIQSP 37
>pdb|1ML6|A Chain A, Crystal Structure Of Mgsta2-2 In Complex With The
Glutathione Conjugate Of Benzo[a]pyrene-7(R),8(S)-Diol-
9(S),10(R)-Epoxide
pdb|1ML6|B Chain B, Crystal Structure Of Mgsta2-2 In Complex With The
Glutathione Conjugate Of Benzo[a]pyrene-7(R),8(S)-Diol-
9(S),10(R)-Epoxide
Length = 221
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 82 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSP 117
G LH+ +RG +C+RWLL G +KF +SP
Sbjct: 2 GKPVLHYFNARGRMECIRWLLAAAGVEFEEKFIQSP 37
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 143 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSP 178
G LH+ +RG +C+RWLL G +KF +SP
Sbjct: 2 GKPVLHYFNARGRMECIRWLLAAAGVEFEEKFIQSP 37
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKF-GKSPINDAAENQQMEVRD----QGV 134
DG TPLH A A+ VR L G L P+ G++P++ A E Q V + G
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 135 DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFG 175
DP + G TPL A R + R LLR G P+ G
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILAR-LLRAHGAPEPEDGG 256
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKF-GKSPINDAAENQQMEVRD----QGV 134
DG TPLH A A+ VR L G L P+ G++P++ A E Q V + G
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 135 DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFG 175
DP + G TPL A R + R LLR G P+ G
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILAR-LLRAHGAPEPEDGG 256
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 35/168 (20%)
Query: 54 KLHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWL--------L 102
K+H RKG++ +VR + GV P +++ G T LH A G D ++L L
Sbjct: 23 KIH-VAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL 81
Query: 103 RYGGKLV------------------PDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGA 144
+G K + + G+ P + E + EV + G ++K G
Sbjct: 82 WHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIG--SHVKHCKGQ 139
Query: 145 TPLHFAASRG--HADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQME 189
T LH+ G + + ++ L++ G DK ++P+ A E + E
Sbjct: 140 TALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNRE 187
>pdb|1EV9|A Chain A, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
pdb|1EV9|C Chain C, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
pdb|1EV9|D Chain D, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
Length = 221
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 82 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSP 117
G LH+ +RG +C+R+LL G +KF +SP
Sbjct: 2 GKPVLHYFNARGRMECIRFLLAAAGVEFDEKFIQSP 37
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 143 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSP 178
G LH+ +RG +C+R+LL G +KF +SP
Sbjct: 2 GKPVLHYFNARGRMECIRFLLAAAGVEFDEKFIQSP 37
>pdb|1EV4|A Chain A, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y With
Gso3 Bound
pdb|1EV4|C Chain C, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y With
Gso3 Bound
pdb|1EV4|D Chain D, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y With
Gso3 Bound
Length = 221
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 82 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSP 117
G LH+ +RG +C+R+LL G +KF +SP
Sbjct: 2 GKPVLHYFNARGRMECIRFLLAAAGVEFDEKFIQSP 37
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 143 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSP 178
G LH+ +RG +C+R+LL G +KF +SP
Sbjct: 2 GKPVLHYFNARGRMECIRFLLAAAGVEFDEKFIQSP 37
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 27/88 (30%)
Query: 82 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDG 141
G T LH+AA + V++L V ++G + + +D
Sbjct: 279 GRTALHYAAQVSNXPIVKYL---------------------------VGEKGSNKDKQDE 311
Query: 142 DGATPLHFAASRGHADCVRWLLRYGGKL 169
DG TP+ AA G + V +L++ G +
Sbjct: 312 DGKTPIXLAAQEGRIEVVXYLIQQGASV 339
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 68 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 108
V ++G + + +D DG TP+ AA G + V +L++ G +
Sbjct: 299 VGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASV 339
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 85 PLHFAASRGHADCVRWLL--RYGGKLVPDKFGKSPINDAAENQQMEVRDQ-----GVDPN 137
PLH AA RG+ +R L R G + DK G + + A ++ + ++ N
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 138 LKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 185
++ G T LH AA +G+AD V+ LL G + K D A N
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATN 182
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 73 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 124
++ N ++ G T LH AA +G+AD V+ LL G + K D A N
Sbjct: 131 IELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATN 182
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 111 DKFGKSPINDAAENQQMEVRDQ----GVDPNLKDGDGATPLHFAASRG 154
+ ++P++ A Q E+ + G DP L+D G TPLH A +G
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 86
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLR-------YGGKLVPDKFGKSPINDAAEN 124
G DP L+D G TPLH A +G V L + + + G + ++ A+ +
Sbjct: 65 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 124
Query: 125 QQMEVRD----QGVDPNLKD-GDGATPLHFAASRGHADCVRWLLRYGG 167
+ + + G D N ++ +G T LH A + D V LL+ G
Sbjct: 125 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 172
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 111 DKFGKSPINDAAENQQMEVRDQ----GVDPNLKDGDGATPLHFAASRG 154
+ ++P++ A Q E+ + G DP L+D G TPLH A +G
Sbjct: 42 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 89
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLR-------YGGKLVPDKFGKSPINDAAEN 124
G DP L+D G TPLH A +G V L + + + G + ++ A+ +
Sbjct: 68 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127
Query: 125 QQMEVRD----QGVDPNLKD-GDGATPLHFAASRGHADCVRWLLRYGG 167
+ + + G D N ++ +G T LH A + D V LL+ G
Sbjct: 128 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 98 VRWLLRYGGKLVPDKFGKSPIN------DAAENQQMEVRDQGV----DPNLKDGDGATPL 147
+R +LR G P K ++ +N DAA ++EV Q V DP+ + +G T L
Sbjct: 1 MRSVLRKAGS--PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITAL 58
Query: 148 HFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
H A + V +L+ G + PD G +P++ AA
Sbjct: 59 HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAA 95
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 74 DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQ----ME 128
DP+ + +G T LH A + V +L+ G + PD G +P++ AA M
Sbjct: 46 DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMA 105
Query: 129 VRDQG---VDPNLKDGDGATPLHFAASRGHADCVRWL 162
+ G L DG A G+ADC +L
Sbjct: 106 LVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYL 142
>pdb|2VCT|A Chain A, Glutathione Transferase A2-2 In Complex With Delta-4-
Andostrene-3-17-Dione
pdb|2VCT|B Chain B, Glutathione Transferase A2-2 In Complex With Delta-4-
Andostrene-3-17-Dione
pdb|2VCT|C Chain C, Glutathione Transferase A2-2 In Complex With Delta-4-
Andostrene-3-17-Dione
pdb|2VCT|D Chain D, Glutathione Transferase A2-2 In Complex With Delta-4-
Andostrene-3-17-Dione
pdb|2VCT|E Chain E, Glutathione Transferase A2-2 In Complex With Delta-4-
Andostrene-3-17-Dione
pdb|2VCT|F Chain F, Glutathione Transferase A2-2 In Complex With Delta-4-
Andostrene-3-17-Dione
pdb|2VCT|G Chain G, Glutathione Transferase A2-2 In Complex With Delta-4-
Andostrene-3-17-Dione
pdb|2VCT|H Chain H, Glutathione Transferase A2-2 In Complex With Delta-4-
Andostrene-3-17-Dione
pdb|2WJU|A Chain A, Glutathione Transferase A2-2 In Complex With Glutathione
pdb|2WJU|B Chain B, Glutathione Transferase A2-2 In Complex With Glutathione
pdb|2WJU|C Chain C, Glutathione Transferase A2-2 In Complex With Glutathione
pdb|2WJU|D Chain D, Glutathione Transferase A2-2 In Complex With Glutathione
pdb|2WJU|E Chain E, Glutathione Transferase A2-2 In Complex With Glutathione
pdb|2WJU|F Chain F, Glutathione Transferase A2-2 In Complex With Glutathione
pdb|2WJU|G Chain G, Glutathione Transferase A2-2 In Complex With Glutathione
pdb|2WJU|H Chain H, Glutathione Transferase A2-2 In Complex With Glutathione
Length = 222
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH++ RG + +RWLL G +KF KS
Sbjct: 7 LHYSNIRGRMESIRWLLAAAGVEFEEKFIKS 37
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH++ RG + +RWLL G +KF KS
Sbjct: 7 LHYSNIRGRMESIRWLLAAAGVEFEEKFIKS 37
>pdb|4ACS|A Chain A, Crystal Structure Of Mutant Gst A2-2 With Enhanced
Catalytic Efficiency With Azathioprine
pdb|4ACS|B Chain B, Crystal Structure Of Mutant Gst A2-2 With Enhanced
Catalytic Efficiency With Azathioprine
pdb|4ACS|C Chain C, Crystal Structure Of Mutant Gst A2-2 With Enhanced
Catalytic Efficiency With Azathioprine
pdb|4ACS|D Chain D, Crystal Structure Of Mutant Gst A2-2 With Enhanced
Catalytic Efficiency With Azathioprine
Length = 222
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH++ RG + +RWLL G +KF KS
Sbjct: 7 LHYSNIRGRMESIRWLLAAAGVEFEEKFIKS 37
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH++ RG + +RWLL G +KF KS
Sbjct: 7 LHYSNIRGRMESIRWLLAAAGVEFEEKFIKS 37
>pdb|1KQJ|A Chain A, Crystal Structure Of A Mutant Of Muty Catalytic Domain
Length = 225
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 151 ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN---QQMEVSTVSPVVRRLL 201
AS+ A + W +YG K +P + K+P QQ +V+TV P R +
Sbjct: 3 ASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFM 56
>pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherichia Coli
pdb|1KG2|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.2a Resolution
pdb|1KG3|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.55a Resolution
Length = 225
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 151 ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN---QQMEVSTVSPVVRRLL 201
AS+ A + W +YG K +P + K+P QQ +V+TV P R +
Sbjct: 3 ASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFM 56
>pdb|1KG5|A Chain A, Crystal Structure Of The K142q Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 151 ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN---QQMEVSTVSPVVRRLL 201
AS+ A + W +YG K +P + K+P QQ +V+TV P R +
Sbjct: 3 ASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFM 56
>pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty
(Core Fragment)
pdb|1WEG|A Chain A, Catalytic Domain Od Muty Form Escherichia Coli K142a
Mutant
Length = 225
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 151 ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN---QQMEVSTVSPVVRRLL 201
AS+ A + W +YG K +P + K+P QQ +V+TV P R +
Sbjct: 3 ASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFM 56
>pdb|1MUD|A Chain A, Catalytic Domain Of Muty From Escherichia Coli, D138n
Mutant Complexed To Adenine
pdb|1MUN|A Chain A, Catalytic Domain Of Muty From Escherichia Coli D138n
Mutant
Length = 225
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 151 ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN---QQMEVSTVSPVVRRLL 201
AS+ A + W +YG K +P + K+P QQ +V+TV P R +
Sbjct: 3 ASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFM 56
>pdb|1KG7|A Chain A, Crystal Structure Of The E161a Mutant Of E.coli Muty (core
Fragment)
Length = 225
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 151 ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN---QQMEVSTVSPVVRRLL 201
AS+ A + W +YG K +P + K+P QQ +V+TV P R +
Sbjct: 3 ASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFM 56
>pdb|1KG6|A Chain A, Crystal Structure Of The K142r Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 151 ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN---QQMEVSTVSPVVRRLL 201
AS+ A + W +YG K +P + K+P QQ +V+TV P R +
Sbjct: 3 ASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFM 56
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 21/162 (12%)
Query: 53 GKLHGCTCRKGEST--------------KVRDQGVDPNLKDGDGATPLHFAASRGHADCV 98
LH T R GE+ ++ + D N++D G TPLH A S
Sbjct: 15 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 74
Query: 99 RWLLRYGGKLVPDKF--GKSPINDAA----ENQQMEVRDQGVDPNLKDGDGATPLHFAAS 152
+ L+R + + G +P+ AA E ++ + D N D G + LH+AA+
Sbjct: 75 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA 134
Query: 153 RGHADCVRWLLRYGG-KLVPDKFGKSPINDAAENQQMEVSTV 193
+ D LL+ G K + + ++P+ AA E + V
Sbjct: 135 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 21/162 (12%)
Query: 53 GKLHGCTCRKGEST--------------KVRDQGVDPNLKDGDGATPLHFAASRGHADCV 98
LH T R GE+ ++ + D N++D G TPLH A S
Sbjct: 47 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 106
Query: 99 RWLLRYGGKLVPDKF--GKSPINDAA----ENQQMEVRDQGVDPNLKDGDGATPLHFAAS 152
+ L+R + + G +P+ AA E ++ + D N D G + LH+AA+
Sbjct: 107 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA 166
Query: 153 RGHADCVRWLLRYGG-KLVPDKFGKSPINDAAENQQMEVSTV 193
+ D LL+ G K + + ++P+ AA E + V
Sbjct: 167 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 21/162 (12%)
Query: 53 GKLHGCTCRKGEST--------------KVRDQGVDPNLKDGDGATPLHFAASRGHADCV 98
LH T R GE+ ++ + D N++D G TPLH A S
Sbjct: 48 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 107
Query: 99 RWLLRYGGKLVPDKF--GKSPINDAA----ENQQMEVRDQGVDPNLKDGDGATPLHFAAS 152
+ L+R + + G +P+ AA E ++ + D N D G + LH+AA+
Sbjct: 108 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA 167
Query: 153 RGHADCVRWLLRYGG-KLVPDKFGKSPINDAAENQQMEVSTV 193
+ D LL+ G K + + ++P+ AA E + V
Sbjct: 168 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 209
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 17/113 (15%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
G+D N++ DG TPL A+ G GG + G S + A +
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSG-----------GGL----ETGNSEEEEDAPAVISDFIY 45
Query: 132 QGVD-PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
QG N D G T LH AA +D + LL + D G++P++ A
Sbjct: 46 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 98
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 78 KDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 121
+ G G+T LH+ +A+C++ LLR + + ++ G++P++ A
Sbjct: 201 QTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 139 KDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
+ G G+T LH+ +A+C++ LLR + + ++ G++P++ A
Sbjct: 201 QTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245
>pdb|1AGS|A Chain A, A Surface Mutant (G82r) Of A Human Alpha-Glutathione S-
Transferase Shows Decreased Thermal Stability And A New
Mode Of Molecular Association In The Crystal
pdb|1AGS|B Chain B, A Surface Mutant (G82r) Of A Human Alpha-Glutathione S-
Transferase Shows Decreased Thermal Stability And A New
Mode Of Molecular Association In The Crystal
Length = 221
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH+ +RG + RWLL G +KF KS
Sbjct: 6 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 36
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH+ +RG + RWLL G +KF KS
Sbjct: 6 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 36
>pdb|1PKW|A Chain A, Crystal Structure Of Human Glutathione Transferase (Gst)
A1-1 In Complex With Glutathione
pdb|1PKW|B Chain B, Crystal Structure Of Human Glutathione Transferase (Gst)
A1-1 In Complex With Glutathione
pdb|1PKZ|A Chain A, Crystal Structure Of Human Glutathione Transferase (Gst)
A1- 1
pdb|1PKZ|B Chain B, Crystal Structure Of Human Glutathione Transferase (Gst)
A1- 1
pdb|1PL1|A Chain A, Crystal Structure Of Human Glutathione Transferase (Gst)
A1- 1 In Complex With A Decarboxy-Glutathione
pdb|1PL1|B Chain B, Crystal Structure Of Human Glutathione Transferase (Gst)
A1- 1 In Complex With A Decarboxy-Glutathione
Length = 222
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH+ +RG + RWLL G +KF KS
Sbjct: 7 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 37
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH+ +RG + RWLL G +KF KS
Sbjct: 7 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 37
>pdb|1PL2|A Chain A, Crystal Structure Of Human Glutathione Transferase (Gst)
A1- 1 T68e Mutant In Complex With Decarboxy-Glutathione
pdb|1PL2|B Chain B, Crystal Structure Of Human Glutathione Transferase (Gst)
A1- 1 T68e Mutant In Complex With Decarboxy-Glutathione
Length = 222
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH+ +RG + RWLL G +KF KS
Sbjct: 7 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 37
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH+ +RG + RWLL G +KF KS
Sbjct: 7 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 37
>pdb|1XWG|A Chain A, Human Gst A1-1 T68e Mutant
pdb|1XWG|B Chain B, Human Gst A1-1 T68e Mutant
Length = 221
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH+ +RG + RWLL G +KF KS
Sbjct: 6 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 36
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH+ +RG + RWLL G +KF KS
Sbjct: 6 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 36
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
G + N D G PLH A GH L+ G L D G+ P+ A E ++
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316
Query: 191 STV 193
T+
Sbjct: 317 VTL 319
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 71 QGVDPNLKDG--DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA----E 123
G D N +G D ATPL A + +LL+ G + D G+ P++ A
Sbjct: 222 HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHT 281
Query: 124 NQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
+G D +D +G PL A +AD V L
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|1GUH|A Chain A, Structure Determination And Refinement Of Human Alpha
Class Glutathione Transferase A1-1, And A Comparison
With The Mu And Pi Class Enzymes
pdb|1GUH|B Chain B, Structure Determination And Refinement Of Human Alpha
Class Glutathione Transferase A1-1, And A Comparison
With The Mu And Pi Class Enzymes
pdb|1GSF|A Chain A, Glutathione Transferase A1-1 Complexed With Ethacrynic
Acid
pdb|1GSF|B Chain B, Glutathione Transferase A1-1 Complexed With Ethacrynic
Acid
pdb|1GSD|A Chain A, Glutathione Transferase A1-1 In Unliganded Form
pdb|1GSD|B Chain B, Glutathione Transferase A1-1 In Unliganded Form
pdb|1K3L|A Chain A, Crystal Structure Analysis Of S-Hexyl-Glutathione Complex
Of Glutathione Transferase At 1.5 Angstroms Resolution
pdb|1K3L|B Chain B, Crystal Structure Analysis Of S-Hexyl-Glutathione Complex
Of Glutathione Transferase At 1.5 Angstroms Resolution
pdb|1K3O|A Chain A, Crystal Structure Analysis Of Apo Glutathione
S-Transferase
pdb|1K3O|B Chain B, Crystal Structure Analysis Of Apo Glutathione
S-Transferase
pdb|1K3Y|A Chain A, Crystal Structure Analysis Of Human Glutathione
S-transferase With S- Hexyl Glutatione And Glycerol At
1.3 Angstrom
pdb|1K3Y|B Chain B, Crystal Structure Analysis Of Human Glutathione
S-transferase With S- Hexyl Glutatione And Glycerol At
1.3 Angstrom
pdb|1GSD|C Chain C, Glutathione Transferase A1-1 In Unliganded Form
pdb|1GSD|D Chain D, Glutathione Transferase A1-1 In Unliganded Form
pdb|1GSF|C Chain C, Glutathione Transferase A1-1 Complexed With Ethacrynic
Acid
pdb|1GSF|D Chain D, Glutathione Transferase A1-1 Complexed With Ethacrynic
Acid
pdb|1GUH|C Chain C, Structure Determination And Refinement Of Human Alpha
Class Glutathione Transferase A1-1, And A Comparison
With The Mu And Pi Class Enzymes
pdb|1GUH|D Chain D, Structure Determination And Refinement Of Human Alpha
Class Glutathione Transferase A1-1, And A Comparison
With The Mu And Pi Class Enzymes
Length = 221
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH+ +RG + RWLL G +KF KS
Sbjct: 6 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 36
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH+ +RG + RWLL G +KF KS
Sbjct: 6 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 36
>pdb|3KTL|A Chain A, Crystal Structure Of An I71a Human Gsta1-1 Mutant In
Complex With S- Hexylglutathione
pdb|3KTL|B Chain B, Crystal Structure Of An I71a Human Gsta1-1 Mutant In
Complex With S- Hexylglutathione
Length = 221
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH+ +RG + RWLL G +KF KS
Sbjct: 6 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 36
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH+ +RG + RWLL G +KF KS
Sbjct: 6 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 36
>pdb|2R6K|A Chain A, Crystal Structure Of An I71v Hgsta1-1 Mutant In Complex
With S- Hexylglutathione
pdb|2R6K|B Chain B, Crystal Structure Of An I71v Hgsta1-1 Mutant In Complex
With S- Hexylglutathione
Length = 222
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH+ +RG + RWLL G +KF KS
Sbjct: 7 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 37
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH+ +RG + RWLL G +KF KS
Sbjct: 7 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 37
>pdb|1USB|A Chain A, Rational Design Of A Novel Enzyme - Efficient Thioester
Hydrolysis Enabled By The Incorporation Of A Single His
Residue Into Human Glutathione Transferase A1-1
pdb|1USB|B Chain B, Rational Design Of A Novel Enzyme - Efficient Thioester
Hydrolysis Enabled By The Incorporation Of A Single His
Residue Into Human Glutathione Transferase A1-1
Length = 225
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH+ +RG + RWLL G +KF KS
Sbjct: 10 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 40
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH+ +RG + RWLL G +KF KS
Sbjct: 10 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 40
>pdb|3ZFL|A Chain A, Crystal Structure Of The V58a Mutant Of Human Class Alpha
Glutathione Transferase In The Apo Form
pdb|3ZFL|B Chain B, Crystal Structure Of The V58a Mutant Of Human Class Alpha
Glutathione Transferase In The Apo Form
Length = 222
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH+ +RG + RWLL G +KF KS
Sbjct: 7 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 37
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH+ +RG + RWLL G +KF KS
Sbjct: 7 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 37
>pdb|3ZFB|A Chain A, Crystal Structure Of The I75a Mutant Of Human Class Alpha
Glutathione Transferase In The Apo Form
pdb|3ZFB|B Chain B, Crystal Structure Of The I75a Mutant Of Human Class Alpha
Glutathione Transferase In The Apo Form
Length = 222
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH+ +RG + RWLL G +KF KS
Sbjct: 7 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 37
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH+ +RG + RWLL G +KF KS
Sbjct: 7 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 37
>pdb|1YDK|A Chain A, Crystal Structure Of The I219a Mutant Of Human Glutathione
Transferase A1-1 With S-Hexylglutathione
pdb|1YDK|B Chain B, Crystal Structure Of The I219a Mutant Of Human Glutathione
Transferase A1-1 With S-Hexylglutathione
Length = 222
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH+ +RG + RWLL G +KF KS
Sbjct: 7 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 37
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH+ +RG + RWLL G +KF KS
Sbjct: 7 LHYFNARGRMESTRWLLAAAGVEFEEKFIKS 37
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
G + N D G PLH A GH L+ G L D G+ P+ A E ++
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316
Query: 191 STV 193
T+
Sbjct: 317 VTL 319
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 71 QGVDPNLKDG--DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA----E 123
G D N +G D ATPL A + +LL+ G + D G+ P++ A
Sbjct: 222 HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHT 281
Query: 124 NQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
+G D +D +G PL A +AD V L
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
G + N D G PLH A GH L+ G L D G+ P+ A E ++
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316
Query: 191 STV 193
T+
Sbjct: 317 VTL 319
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 71 QGVDPNLKDG--DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA----E 123
G D N +G D ATPL A + +LL+ G + D G+ P++ A
Sbjct: 222 HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHT 281
Query: 124 NQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
+G D +D +G PL A +AD V L
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|1GSE|A Chain A, Glutathione Transferase A1-1 Complexed With An Ethacrynic
Acid Glutathione Conjugate (Mutant R15k)
pdb|1GSE|B Chain B, Glutathione Transferase A1-1 Complexed With An Ethacrynic
Acid Glutathione Conjugate (Mutant R15k)
Length = 221
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH+ +RG + RWLL G +KF KS
Sbjct: 6 LHYFNARGKMESTRWLLAAAGVEFEEKFIKS 36
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH+ +RG + RWLL G +KF KS
Sbjct: 6 LHYFNARGKMESTRWLLAAAGVEFEEKFIKS 36
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 78 KDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQMEVRDQGVD 135
K DG T LH+AA DC++ LL+ G LV ++ G++ ++ A + E + +
Sbjct: 203 KAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEE--LL 259
Query: 136 PNLKDGDGATPLHFAAS 152
+ G A PLH S
Sbjct: 260 EQAQAGTFAFPLHVDYS 276
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 139 KDGDGATPLHFAASRGHADCVRWLLR 164
K DG T LH+AA DC++ LL+
Sbjct: 203 KAADGNTALHYAALYNQPDCLKLLLK 228
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 78 KDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQMEVRDQGVD 135
K DG T LH+AA DC++ LL+ G LV ++ G++ ++ A + E + +
Sbjct: 222 KAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEE--LL 278
Query: 136 PNLKDGDGATPLH 148
+ G A PLH
Sbjct: 279 EQAQAGTFAFPLH 291
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 139 KDGDGATPLHFAASRGHADCVRWLLR 164
K DG T LH+AA DC++ LL+
Sbjct: 222 KAADGNTALHYAALYNQPDCLKLLLK 247
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 6/129 (4%)
Query: 68 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPIN----DAA 122
+R++ D + + DG TPL AA + L+ + D GKS ++
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 123 ENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLL-RYGGKLVPDKFGKSPIND 181
+ + + G + ++++ TPL AA G + + LL + + + D + P +
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 182 AAENQQMEV 190
A E ++
Sbjct: 121 AQERMHHDI 129
>pdb|2R3X|A Chain A, Crystal Structure Of An R15l Hgsta1-1 Mutant Complexed
With S-Hexyl- Glutathione
pdb|2R3X|B Chain B, Crystal Structure Of An R15l Hgsta1-1 Mutant Complexed
With S-Hexyl- Glutathione
Length = 222
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH+ +RG + RWLL G +KF KS
Sbjct: 7 LHYFNARGLMESTRWLLAAAGVEFEEKFIKS 37
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH+ +RG + RWLL G +KF KS
Sbjct: 7 LHYFNARGLMESTRWLLAAAGVEFEEKFIKS 37
>pdb|3I69|A Chain A, Apo Glutathione Transferase A1-1 Gimf-Helix Mutant
pdb|3I69|B Chain B, Apo Glutathione Transferase A1-1 Gimf-Helix Mutant
pdb|3I69|C Chain C, Apo Glutathione Transferase A1-1 Gimf-Helix Mutant
pdb|3I69|D Chain D, Apo Glutathione Transferase A1-1 Gimf-Helix Mutant
pdb|3I69|E Chain E, Apo Glutathione Transferase A1-1 Gimf-Helix Mutant
pdb|3I69|F Chain F, Apo Glutathione Transferase A1-1 Gimf-Helix Mutant
pdb|3I69|G Chain G, Apo Glutathione Transferase A1-1 Gimf-Helix Mutant
pdb|3I69|H Chain H, Apo Glutathione Transferase A1-1 Gimf-Helix Mutant
pdb|3I6A|A Chain A, Human Gst A1-1 Gimf Mutant With Glutathione
pdb|3I6A|B Chain B, Human Gst A1-1 Gimf Mutant With Glutathione
pdb|3I6A|C Chain C, Human Gst A1-1 Gimf Mutant With Glutathione
pdb|3I6A|D Chain D, Human Gst A1-1 Gimf Mutant With Glutathione
pdb|3I6A|E Chain E, Human Gst A1-1 Gimf Mutant With Glutathione
pdb|3I6A|F Chain F, Human Gst A1-1 Gimf Mutant With Glutathione
pdb|3I6A|G Chain G, Human Gst A1-1 Gimf Mutant With Glutathione
pdb|3I6A|H Chain H, Human Gst A1-1 Gimf Mutant With Glutathione
pdb|3IK9|A Chain A, Human Gst A1-1-Gimf With Gsdhn
pdb|3IK9|B Chain B, Human Gst A1-1-Gimf With Gsdhn
pdb|3IK9|C Chain C, Human Gst A1-1-Gimf With Gsdhn
pdb|3IK9|D Chain D, Human Gst A1-1-Gimf With Gsdhn
pdb|3IK9|E Chain E, Human Gst A1-1-Gimf With Gsdhn
pdb|3IK9|F Chain F, Human Gst A1-1-Gimf With Gsdhn
pdb|3IK9|G Chain G, Human Gst A1-1-Gimf With Gsdhn
pdb|3IK9|H Chain H, Human Gst A1-1-Gimf With Gsdhn
Length = 222
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
LH+ RG + RWLL G +KF KS
Sbjct: 7 LHYFNGRGRMESTRWLLAAAGVEFEEKFIKS 37
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
LH+ RG + RWLL G +KF KS
Sbjct: 7 LHYFNGRGRMESTRWLLAAAGVEFEEKFIKS 37
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 125 QQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
QQ VR ++GD A+P + A R D V WL + G
Sbjct: 75 QQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTG 117
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 21/162 (12%)
Query: 53 GKLHGCTCRKGEST--------------KVRDQGVDPNLKDGDGATPLHFAASRGHADCV 98
LH T R GE+ ++ + D ++D G TPLH A S
Sbjct: 12 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVF 71
Query: 99 RWLLRYGGKLVPDKF--GKSPINDAA----ENQQMEVRDQGVDPNLKDGDGATPLHFAAS 152
+ LLR + + G +P+ AA E ++ + D N D G + LH+AA+
Sbjct: 72 QILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAA 131
Query: 153 RGHADCVRWLLRYGG-KLVPDKFGKSPINDAAENQQMEVSTV 193
+ D LL+ G K + + ++P+ AA E + V
Sbjct: 132 VNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKV 173
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 24 GDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPN 76
GD + L++ + +L++ T+ YH + GK H C + G + G+ N
Sbjct: 236 GDEIQLTDAIDMLIEKETVEAYH----MKGKSHDCGNKLGYMQAFVEYGIRHN 284
>pdb|1TDI|A Chain A, Crystal Structure Of Hgsta3-3 In Complex With Glutathione
pdb|1TDI|B Chain B, Crystal Structure Of Hgsta3-3 In Complex With Glutathione
pdb|2VCV|A Chain A, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|B Chain B, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|C Chain C, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|D Chain D, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|E Chain E, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|F Chain F, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|G Chain G, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|H Chain H, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|I Chain I, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|J Chain J, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|K Chain K, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|L Chain L, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|M Chain M, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|N Chain N, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|O Chain O, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|P Chain P, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
Length = 222
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 82 GATPLHFAASRGHADCVRWLLRYGGKLVPDKF 113
G LH+ RG + +RWLL G +KF
Sbjct: 3 GKPKLHYFNGRGRMEPIRWLLAAAGVEFEEKF 34
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 143 GATPLHFAASRGHADCVRWLLRYGGKLVPDKF 174
G LH+ RG + +RWLL G +KF
Sbjct: 3 GKPKLHYFNGRGRMEPIRWLLAAAGVEFEEKF 34
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 62 KGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK---LVPDKFGK 115
+G+ VR + G DPN + G P+ G A LL +G + P +
Sbjct: 22 RGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80
Query: 116 SPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
P++DAA ++ + G ++ D G P+ A +GH D R+L
Sbjct: 81 -PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 62 KGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK---LVPDKFGK 115
+G +VR + G +PN + G P+ G A LL +G + P +
Sbjct: 22 RGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPATLTR 80
Query: 116 SPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
P++DAA ++ + G +++D G P+ A GH D R+L G
Sbjct: 81 -PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG 135
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 35 LLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKV--RDQGVDPNLKDGDGATPLHFAASR 92
LL+ HG P+ + A L +H T V G +++D G P+ A
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 121
Query: 93 GHADCVRWLLRYGG 106
GH D R+L G
Sbjct: 122 GHRDVARYLRAAAG 135
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 30 SNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKV--RDQGVDPNLKDGDGATPLH 87
+ LL+ HG P+ + A L +H T V G +++D G P+
Sbjct: 57 ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVD 116
Query: 88 FAASRGHADCVRWLLRYGG 106
A GH D R+L G
Sbjct: 117 LAEELGHRDVARYLRAAAG 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,890,123
Number of Sequences: 62578
Number of extensions: 302432
Number of successful extensions: 1053
Number of sequences better than 100.0: 138
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 349
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)