RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14140
(207 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 105 bits (264), Expect = 2e-29
Identities = 52/121 (42%), Positives = 77/121 (63%), Gaps = 6/121 (4%)
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME-VR--- 130
N +D DG TPLH AAS GH + V+ LL G + D G++P++ AA+N +E V+
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 189
++G D N +D DG TPLH AA G+ D V+ LL++G + DK G++P++ AA+N +E
Sbjct: 61 EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120
Query: 190 V 190
V
Sbjct: 121 V 121
Score = 77.0 bits (190), Expect = 2e-18
Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 43/141 (30%)
Query: 31 NCLSLLVQHGTLPDYHEEAKLHGKLHGCT-----CRKGESTKVR---DQGVDPNLKDGDG 82
+ LL+++G + + G T + G V+ ++G D N +D DG
Sbjct: 21 EVVKLLLENGADVNAKDN-------DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG 73
Query: 83 ATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGD 142
TPLH AA G+ D V+ LL++G D N +D D
Sbjct: 74 NTPLHLAARNGNLDVVKLLLKHG----------------------------ADVNARDKD 105
Query: 143 GATPLHFAASRGHADCVRWLL 163
G TPLH AA GH + V+ LL
Sbjct: 106 GRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 79.6 bits (197), Expect = 9e-20
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 86 LHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV----RDQGVDPNLKD 140
LH AA G+ + V+ LL G + + D + ++ AA N +E+ + G D N KD
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 141 GDGATPLHFAASRGHADCVRWLLRYG 166
DG T LH AA G+ + V+ LL +G
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLLEHG 84
Score = 55.3 bits (134), Expect = 1e-10
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 31 NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLH 87
+ LL++ G + + LH R G V+ + G D N KD DG T LH
Sbjct: 11 ELVKLLLEKGADVNLGDTDTA---LH-LAARNGNLEIVKLLLEHGADVNAKDKDGNTALH 66
Query: 88 FAASRGHADCVRWLLRYG 105
AA G+ + V+ LL +G
Sbjct: 67 LAARNGNLEIVKLLLEHG 84
Score = 37.2 bits (87), Expect = 6e-04
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 147 LHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLL 201
LH AA G+ + V+ LL G + + D + ++ AA N +E +V+ LL
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLE------IVKLLL 48
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 69.1 bits (168), Expect = 2e-14
Identities = 49/170 (28%), Positives = 68/170 (40%), Gaps = 17/170 (10%)
Query: 21 GSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVR---DQGVDPNL 77
+ S LL + LH KG+ V+ G D N
Sbjct: 43 LELALLPAASLSELLLKLIVDRHLAARDLDGRLPLH-SAASKGDDKIVKLLLASGADVNA 101
Query: 78 KDGDGATPLHFAASRGH-----ADCVRWLLRYGGKL----VPDKFGKSPINDAAENQQME 128
KD DG TPLH AA G+ + + LL G L + D+ G +P++ AA N +
Sbjct: 102 KDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDAD 161
Query: 129 V----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKF 174
+ + G DPN ++ G T L AA G + V+ LL G L KF
Sbjct: 162 IVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKF 211
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 60.3 bits (147), Expect = 7e-13
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 28/80 (35%)
Query: 84 TPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDG 143
T LH AA G + V++LL ++GVD N D DG
Sbjct: 3 TALHKAAISGRLELVKYLL----------------------------EKGVDINRTDEDG 34
Query: 144 ATPLHFAASRGHADCVRWLL 163
T LH AA G+ + ++ LL
Sbjct: 35 NTALHIAAENGNLEVLKLLL 54
Score = 48.4 bits (116), Expect = 2e-08
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLL 102
++GVD N D DG T LH AA G+ + ++ LL
Sbjct: 22 EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 36.4 bits (85), Expect = 5e-04
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 145 TPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
T LH AA G + V++LL G + D+ G + ++ AAEN +EV
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEV 49
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 61.9 bits (150), Expect = 2e-11
Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
D G+D N+KD + T LH+A +G + ++ L YG + + D G PI+ A ++ +
Sbjct: 112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFD 171
Query: 129 V----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
+ ++G N+KD +G +PLH AA G C++ L+ +G + K G +P+++A
Sbjct: 172 IIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA 230
Score = 48.0 bits (114), Expect = 9e-07
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA--ENQQ 126
++G N+KD +G +PLH AA G C++ L+ +G + K G +P+++A
Sbjct: 178 EKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSA 237
Query: 127 MEVRDQGVDPNLKDGDGATPLHFAASRG-HADCVRWLLRYGGKL-VPDKFGKSPINDAAE 184
+E+ N +D DG+TPLH A + D + LL + + + D G++PI+ A
Sbjct: 238 IELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTA-- 295
Query: 185 NQQMEVSTVSPVVRRLL 201
+ PV++ ++
Sbjct: 296 ---FKYINKDPVIKDII 309
Score = 38.8 bits (90), Expect = 0.001
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 117 PINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 175
PI ++ + D G+D N+KD + T LH+A +G + ++ L YG + + D G
Sbjct: 98 PIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNG 157
Query: 176 KSPINDAAENQQMEV 190
PI+ A ++ ++
Sbjct: 158 CYPIHIAIKHNFFDI 172
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 60.7 bits (147), Expect = 6e-11
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 40/164 (24%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA--------- 121
+DP++ D G TPLH AAS+G+ DCV LL++ + + D G + + +A
Sbjct: 548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIF 607
Query: 122 --------AENQQM------------------EVRDQGVDPNLKDGDGATPLHFAASRGH 155
+ E+ QG++ + +D GAT L A + H
Sbjct: 608 RILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDH 667
Query: 156 ADCVRWLLRYGGKLVP----DKFGKSPINDAAENQQMEVSTVSP 195
D VR L+ G + D F + + + + +++ S
Sbjct: 668 VDMVRLLIMNGADVDKANTDDDFSPTELRELLQKRELGHSITIV 711
Score = 36.4 bits (84), Expect = 0.008
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 58 CTC-RKGESTKVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP--- 110
CT ++ + T +++ QG++ + +D GAT L A + H D VR L+ G +
Sbjct: 627 CTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANT 686
Query: 111 -DKFGKSPINDAAENQQMEVRDQGVD 135
D F + + + + +++ VD
Sbjct: 687 DDDFSPTELRELLQKRELGHSITIVD 712
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 59.3 bits (144), Expect = 1e-10
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 28/162 (17%)
Query: 33 LSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKV----RDQGVDPNLKDGDGATPLHF 88
+ LL+++G + + + L +K S + D G + N+K+ DG LH
Sbjct: 89 VKLLLEYGANVNAPDNNGIT-PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL 147
Query: 89 AASRGHADC------------------VRWLLRYGGKL-VPDKFGKSPINDAAENQQME- 128
D V +LL YG + + D +G +P++ A N E
Sbjct: 148 YLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEF 207
Query: 129 VR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
V+ D G +PNL + G TPLH A + + + LL G
Sbjct: 208 VKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249
Score = 47.4 bits (113), Expect = 1e-06
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 37/163 (22%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHA-----DCVRWLLRYGGKL-VPDKFGKSPINDAAE 123
D G D N + +TPLH+ ++ + + V+ LL YG + PD G +P+ A
Sbjct: 56 DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAIS 115
Query: 124 N--QQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADC------------------V 159
+ D G + N+K+ DG LH D V
Sbjct: 116 KKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRV 175
Query: 160 RWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLL 201
+LL YG + + D +G +P++ A N E V+ LL
Sbjct: 176 NYLLSYGVPINIKDVYGFTPLHYAVYNNNPE------FVKYLL 212
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 53.1 bits (128), Expect = 5e-10
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 28/78 (35%)
Query: 73 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQ 132
+D N DG+G TPLH AA G + V+WLL+
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWLLKP---------------------------- 38
Query: 133 GVDPNLKDGDGATPLHFA 150
GVD NL+D DG T L A
Sbjct: 39 GVDLNLRDSDGLTALDLA 56
Score = 50.4 bits (121), Expect = 5e-09
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 134 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPI 179
+D N DG+G TPLH AA G + V+WLL+ G L + D G + +
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53
Score = 26.5 bits (59), Expect = 1.9
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 55 LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
LH + G V+ GVD NL+D DG T L A
Sbjct: 20 LH-LAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 57.2 bits (138), Expect = 8e-10
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 72 GVDPNLKDGD-GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
G D N+KD G T LH+A LL YG + +PDK SP++ A ++ +
Sbjct: 157 GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPI 216
Query: 130 R----DQGVDPNLKDGDGATPLHFAASR-GHADCVRWLLRYG 166
+ G + +D G TPLH + D ++ LL +G
Sbjct: 217 VHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHG 258
Score = 44.9 bits (106), Expect = 1e-05
Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 38/149 (25%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLR--------YGGKLVPDKF-------GKS 116
G + N D TPLH + ++ ++R Y + D F K
Sbjct: 60 GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKI 119
Query: 117 PINDAAENQQ----MEVRDQ-----------------GVDPNLKDGD-GATPLHFAASRG 154
+ + +N Q + + + G D N+KD G T LH+A
Sbjct: 120 ILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENK 179
Query: 155 HADCVRWLLRYGGKL-VPDKFGKSPINDA 182
LL YG + +PDK SP++ A
Sbjct: 180 DQRLTELLLSYGANVNIPDKTNNSPLHHA 208
Score = 29.8 bits (67), Expect = 1.1
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 72 GVDPNLKDGDGATPLHFAASR-GHADCVRWLLRYGGKLVPDKF--GKSPINDAAENQQME 128
G + +D G TPLH + D ++ LL +G + + G + ++ + ++++
Sbjct: 224 GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKL 283
Query: 129 --VRDQGVDPNLKDGDGATPLHFA 150
+ + G D N + TPL A
Sbjct: 284 KLLLEYGADINSLNSYKLTPLSSA 307
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 56.8 bits (137), Expect = 1e-09
Identities = 40/126 (31%), Positives = 48/126 (38%), Gaps = 38/126 (30%)
Query: 63 GESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPIN 119
G++ R G DPN +D DG TPLH A + GH VR LL +G
Sbjct: 93 GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGA------------- 139
Query: 120 DAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY-------GGKLVPD 172
DP L D DG TPL A G + V+ L R+ G PD
Sbjct: 140 ---------------DPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPD 184
Query: 173 KFGKSP 178
F P
Sbjct: 185 SFTGKP 190
Score = 51.4 bits (123), Expect = 7e-08
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 133 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
G DPN +D DG TPLH A + GH VR LL +G + DK GK+P+ A EN EV
Sbjct: 105 GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV 163
Score = 43.3 bits (102), Expect = 3e-05
Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 38/124 (30%)
Query: 9 AVSGDVKCSSQAGSMGDRLMLS-----NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKG 63
A SGD ++G R++L+ NC DY LH C G
Sbjct: 90 AASGD--------AVGARILLTGGADPNCR----------DYDGRTPLH-----IACANG 126
Query: 64 ESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY-------GGKLVPDKF 113
VR + G DP L D DG TPL A G + V+ L R+ G PD F
Sbjct: 127 HVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSF 186
Query: 114 GKSP 117
P
Sbjct: 187 TGKP 190
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 55.8 bits (134), Expect = 2e-09
Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 22 SMGDRLMLSNCLSLLVQHGTLPDYHE---EAKLHGKLHGCTCRKGESTKVRDQGVDPNLK 78
+ + S + LL++HG +PD E++LH + + E + D ++
Sbjct: 40 KLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFAD-DVF 98
Query: 79 DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQG 133
DG TPLH A D ++ L+ G +P+ SP++ A ++ + D
Sbjct: 99 YKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158
Query: 134 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSP----INDAAENQQME 189
+++D G TPL A ++G + LL G D FGK+ + A EN +++
Sbjct: 159 ACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN--IDYFGKNGCVAALCYAIENNKID 216
Query: 190 VSTVSPVVRR 199
+ V ++R
Sbjct: 217 I--VRLFIKR 224
Score = 42.7 bits (100), Expect = 7e-05
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFG---KSPINDAAENQQ 126
D G++PN + DG +P+ A ++ ++ L+++G +PD +S ++DA E
Sbjct: 23 DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGA--IPDVKYPDIESELHDAVEEGD 80
Query: 127 MEVRDQGVDPN--LKD---GDGATPLHFAASRGHADCVRWLLRYG 166
++ ++ +D D DG TPLH A D ++ L+ G
Sbjct: 81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG 125
Score = 34.6 bits (79), Expect = 0.031
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSP----INDAAENQQME-VR 130
+++D G TPL A ++G + LL G D FGK+ + A EN +++ VR
Sbjct: 162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN--IDYFGKNGCVAALCYAIENNKIDIVR 219
Query: 131 ---DQGVDPNL 138
+G D N+
Sbjct: 220 LFIKRGADCNI 230
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 48.5 bits (116), Expect = 7e-07
Identities = 32/100 (32%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 72 GVDPNLKDGDGATPLHFAA--SRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA-ENQQM 127
G DP D G TPLH A S V LL G + +++G++P++ AA N
Sbjct: 212 GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPR 271
Query: 128 EVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLR 164
R G D N DG TPL + VR L
Sbjct: 272 ACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA 311
Score = 43.5 bits (103), Expect = 3e-05
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADC---VRWLLRYGGKL-VPDKFGKSPINDAAENQQ 126
G D N + G TPLH VR LL G + P++ G +P++ N
Sbjct: 36 AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNAT 95
Query: 127 ME--VR---DQGVDPNLKDGDGATPLHFAAS--RGHADCVRWLLRYGGKL-VPDKFGKSP 178
++ G D N KD G TPLH S + +R LLR G + D +G +P
Sbjct: 96 TLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTP 155
Query: 179 I 179
+
Sbjct: 156 L 156
Score = 41.5 bits (98), Expect = 1e-04
Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 28/151 (18%)
Query: 55 LHGCTCRKGESTKVR------DQGVDPNLKDGDGATPLH-FAASRG-HADCVRWLLRYGG 106
LH G + + +G D N D G TPL SR + + +R L+ G
Sbjct: 121 LH--VYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGA 178
Query: 107 KLVPDKFGKSPINDAAENQQM-----------EVRDQGVDPNLKDGDGATPLHFAA--SR 153
D + + + + E+ G DP D G TPLH A S
Sbjct: 179 ----DVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSS 234
Query: 154 GHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
V LL G + +++G++P++ AA
Sbjct: 235 CKRSLVLPLLIAGISINARNRYGQTPLHYAA 265
Score = 38.1 bits (89), Expect = 0.002
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 12/144 (8%)
Query: 72 GVDPNLKDGDGATPLHFAAS--RGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
G D N KD G TPLH S + +R LLR G + D +G +P+ +++
Sbjct: 107 GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNAN 166
Query: 129 VR------DQGVDPNLKDGDGATPLH-FAAS-RGHADCVRWLLRYG-GKLVPDKFGKSPI 179
V D G D D + LH S + A VR L+R G D G +P+
Sbjct: 167 VELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPL 226
Query: 180 NDAAENQQMEVSTVSPVVRRLLTI 203
+ A + S V P++ ++I
Sbjct: 227 HSMATGSSCKRSLVLPLLIAGISI 250
Score = 37.7 bits (88), Expect = 0.003
Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 19/145 (13%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGH-ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 127
+ G D N + G TPLH D ++ L++ G + DK G++P++
Sbjct: 71 EAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSG--F 128
Query: 128 EVR--------DQGVDPNLKDGDGATPLH-FAASRG-HADCVRWLLRYGGKLVPDKFGKS 177
+ +G D N D G TPL SR + + +R L+ G D +
Sbjct: 129 NINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGA----DVYAVD 184
Query: 178 PINDAAENQQMEVSTVSP-VVRRLL 201
+ + ++ +VR L+
Sbjct: 185 DRFRSLLHHHLQSFKPRARIVRELI 209
Score = 33.8 bits (78), Expect = 0.047
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 70 DQGVDPNLKDGDGATPLH-FAAS-RGHADCVRWLLRYG-GKLVPDKFGKSPINDAAENQQ 126
D G D D + LH S + A VR L+R G D G +P++ A
Sbjct: 175 DAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSS 234
Query: 127 ME---VRD---QGVDPNLKDGDGATPLHFAA-SRGHADCVRWLLRYGG 167
+ V G+ N ++ G TPLH+AA C R L+ G
Sbjct: 235 CKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRR-LIALGA 281
Score = 29.6 bits (67), Expect = 1.0
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLR 103
G D N DG TPL + VR L
Sbjct: 279 LGADINAVSSDGNTPLSLMVRNNNGRAVRAALA 311
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 43.7 bits (104), Expect = 8e-07
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYG 105
DG TPLH AA GH + V+ LL G
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAG 25
Score = 43.7 bits (104), Expect = 8e-07
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 142 DGATPLHFAASRGHADCVRWLLRYG 166
DG TPLH AA GH + V+ LL G
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAG 25
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 47.4 bits (112), Expect = 2e-06
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 67 KVRDQGVDPNLKDGDGATPLHFAASRGH-ADCVRWLLRYGGKL-VPDKFGKSPINDAA-- 122
K+ ++G D N K+ G TPL+ A G+ + +R L+ G + D+ +P++ A+
Sbjct: 292 KLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL 351
Query: 123 ---ENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
++ + + + G + N +D TP+H+AA R + + LL YG +
Sbjct: 352 DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI 401
Score = 42.0 bits (98), Expect = 1e-04
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL--VPDKFGKSPINDA--AENQQM 127
G + N +D TP+H+AA R + + LL YG + + K G + ++ A N M
Sbjct: 365 GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIG-TALHFALCGTNPYM 423
Query: 128 EVR---DQGVDPNLKDGDGATPLHFAASRG-HADCVRWLLRYGG 167
V+ D+G + N K+ D +TPLH+A + D + LL G
Sbjct: 424 SVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGA 467
Score = 39.7 bits (92), Expect = 6e-04
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 125 QQMEVR------DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
QQ E+ + G D N KD TP+H+AA RG+A V LL YG
Sbjct: 154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGA 202
Score = 38.9 bits (90), Expect = 0.001
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 106
+ G D N KD TP+H+AA RG+A V LL YG
Sbjct: 166 EGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGA 202
Score = 31.6 bits (71), Expect = 0.34
Identities = 37/150 (24%), Positives = 52/150 (34%), Gaps = 39/150 (26%)
Query: 41 TLPDYHEE-----AKLHGKLHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASR 92
TL DY + K+ LH C V+ D+G + N K+ D +TPLH+A +
Sbjct: 393 TLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKK 452
Query: 93 G-HADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAA 151
D + LL D G D N + PL A
Sbjct: 453 NCKLDVIEMLL----------------------------DNGADVNAINIQNQYPLLIAL 484
Query: 152 SRGHADCVRWLLRYGGKLVPDKFGKSPIND 181
+ V LL YG +L + +ND
Sbjct: 485 --EYHGIVNILLHYGAELRDSRVLHKSLND 512
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 39.5 bits (93), Expect = 2e-05
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKL 108
DG TPLH AA G+ + V+ LL G +
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADI 28
Score = 39.5 bits (93), Expect = 2e-05
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 142 DGATPLHFAASRGHADCVRWLLRYGGKL 169
DG TPLH AA G+ + V+ LL G +
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADI 28
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 40.4 bits (94), Expect = 3e-04
Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 53/182 (29%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHA--DCVRWLLRYGGKL-------------------- 108
G DPN D TPL++ + + + L++YG K+
Sbjct: 94 HGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSE 153
Query: 109 --------------VPDKFGKSPIND--AAENQQME----VRDQGVDPNLKDGDGATPLH 148
+ DKFGK+ I+ ++N + + G+ P+ D DG TPLH
Sbjct: 154 RVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLH 213
Query: 149 FAASR--GHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTVSP--VVRRLLTIQ 204
S+ + D + LL +KFG SP+ + + T+SP ++ +LL+
Sbjct: 214 IVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLT-------LLIKTLSPAHLINKLLSTS 266
Query: 205 KV 206
V
Sbjct: 267 NV 268
Score = 37.0 bits (85), Expect = 0.005
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPI-------NDAA 122
+G PN D DG PLH A+ + V LL +G DK K+P+ ++
Sbjct: 61 RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVI 120
Query: 123 ENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPIND 181
E + V+ N D +G PL A + + ++ G + + DKFGK+ I+
Sbjct: 121 ERINLLVQYGAKINNSVDEEGCGPL-LACTDPSERVFKKIMSIGFEARIVDKFGKNHIHR 179
Query: 182 AAENQQMEVSTVS 194
+ + ST+S
Sbjct: 180 HLMSDNPKASTIS 192
Score = 32.3 bits (73), Expect = 0.14
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 128 EVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPI 179
E+ +G PN D DG PLH A+ + V LL +G DK K+P+
Sbjct: 57 ELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPL 109
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 36.1 bits (84), Expect = 5e-04
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYG 105
DG TPLH AA G+ + V+ LL +G
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHG 25
Score = 36.1 bits (84), Expect = 5e-04
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 142 DGATPLHFAASRGHADCVRWLLRYG 166
DG TPLH AA G+ + V+ LL +G
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHG 25
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 33.9 bits (77), Expect = 0.025
Identities = 36/140 (25%), Positives = 50/140 (35%), Gaps = 30/140 (21%)
Query: 78 KDGDGATPLHFAASRG------------HADCVRWLLRYGGKLVPDKFGKSPINDAAENQ 125
K+ +G H AA G DC L D G+ I+ AAE
Sbjct: 17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALN-----ATDDAGQMCIHIAAEKH 71
Query: 126 Q----MEVRDQ----GVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGG---KLVPDK 173
+ E+ D G D N ++ +G T LH AA R D WL G
Sbjct: 72 EAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNAD 131
Query: 174 FGKSPINDAAENQQMEVSTV 193
KSP A +N+ + + +
Sbjct: 132 -NKSPFELAIDNEDVAMMQI 150
Score = 28.9 bits (64), Expect = 1.3
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 72 GVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGG---KLVPDKFGKSPINDAAENQ 125
G D N ++ +G T LH AA R D WL G KSP A +N+
Sbjct: 87 GADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNAD-NKSPFELAIDNE 143
>gnl|CDD|239375 cd03077, GST_N_Alpha, GST_N family, Class Alpha subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. The class Alpha subfamily is composed of
eukaryotic GSTs which can form homodimer and
heterodimers. There are at least six types of class
Alpha GST subunits in rats, four of which have human
counterparts, resulting in many possible isoenzymes with
different activities, tissue distribution and substrate
specificities. Human GSTA1-1 and GSTA2-2 show high GSH
peroxidase activity. GSTA3-3 catalyzes the isomerization
of intermediates in steroid hormone biosynthesis.
GSTA4-4 preferentially catalyzes the GSH conjugation of
alkenals.
Length = 79
Score = 31.7 bits (72), Expect = 0.046
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKSP 117
LH+ RG + +RWLL G +KF +S
Sbjct: 4 LHYFNGRGRMESIRWLLAAAGVEFEEKFIESA 35
Score = 31.7 bits (72), Expect = 0.046
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 147 LHFAASRGHADCVRWLLRYGGKLVPDKFGKSP 178
LH+ RG + +RWLL G +KF +S
Sbjct: 4 LHYFNGRGRMESIRWLLAAAGVEFEEKFIESA 35
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 30.4 bits (69), Expect = 0.64
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 19/99 (19%)
Query: 109 VPDKFGKSP-INDAAENQQMEVRDQGVDPNLK-DGD-GATPLHFAASRGHA---DCVRWL 162
PD+ G+S A EN+ +E+ + NL G G T LH + + L
Sbjct: 47 CPDRLGRSALFVAAIENENLEL--TELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHL 104
Query: 163 LRYGGK-----LVPDK------FGKSPINDAAENQQMEV 190
L K L D+ G + ++ AA Q E+
Sbjct: 105 LAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEI 143
>gnl|CDD|233238 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle.
This model describes the bacterial and organellar branch
of the ribosomal protein S7 family (includes prokaroytic
S7 and eukaryotic S5). The eukaryotic and archaeal
branch is described by model TIGR01028 [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 154
Score = 27.6 bits (62), Expect = 3.3
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 20/92 (21%)
Query: 107 KLVPDKFGKSPI---NDAAENQQ--MEVRDQGVDPNLKDGDGAT---PLHFAASRGHADC 158
+ + K G+ P+ A EN + +EV+ + V GAT P+ SR +A
Sbjct: 46 ERIAKKTGEDPLEVFEQALENVKPLVEVKSRRVG-------GATYQVPVEVRPSRRYALA 98
Query: 159 VRWLLRY----GGKLVPDKFGKSPINDAAENQ 186
+RWL+ GGK + ++ + I DAA N
Sbjct: 99 IRWLIEAARKRGGKSMAERL-ANEILDAANNT 129
Score = 26.9 bits (60), Expect = 5.4
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 81 DGAT---PLHFAASRGHADCVRWLLRY----GGKLVPDKFGKSPINDAAENQ 125
GAT P+ SR +A +RWL+ GGK + ++ + I DAA N
Sbjct: 79 GGATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERL-ANEILDAANNT 129
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 27.1 bits (60), Expect = 4.6
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 124 NQQMEVRDQGVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGG 167
+ + + G D N K+ G TPLH A + + WL G
Sbjct: 72 EKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPG 116
Score = 27.1 bits (60), Expect = 5.3
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 72 GVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGG 106
G D N K+ G TPLH A + + WL G
Sbjct: 81 GADINGKERVFGNTPLHIAVYTQNYELATWLCNQPG 116
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one LDL-receptor
class A domain, one C-type lectin family domain, and
16-18 putative TMSs in positions between residues 2200
and 4100. Polycystin-L has been shown to be a cation
(Na+, K+ and Ca2+) channel that is activated by Ca2+. Two
members of the PCC family (polycystin 1 and 2) are
mutated in autosomal dominant polycystic kidney disease,
and polycystin-L is deleted in mice with renal and
retinal defects. Note: this model is restricted to the
amino half for technical reasons.
Length = 2740
Score = 27.4 bits (60), Expect = 8.3
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 70 DQGVDPNLKDGDGATPLHF-----AASRGHADC 97
++ DPNL D D + LHF A+S+G A C
Sbjct: 2275 EESYDPNLDDDD-QSLLHFHWACQASSKGEAGC 2306
Score = 27.4 bits (60), Expect = 8.3
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 131 DQGVDPNLKDGDGATPLHF-----AASRGHADC 158
++ DPNL D D + LHF A+S+G A C
Sbjct: 2275 EESYDPNLDDDD-QSLLHFHWACQASSKGEAGC 2306
>gnl|CDD|238303 cd00542, Ntn_PVA, Penicillin V acylase (PVA), also known as
conjugated bile salt acid hydrolase (CBAH), catalyzes
the hydrolysis of penicillin V to yield 6-amino
penicillanic acid (6-APA), an important key intermediate
of semisynthetic penicillins. PVA has an N-terminal
nucleophilic cysteine, as do other members of the Ntn
hydrolase family to which PVA belongs. This
nucleophilic cysteine is exposed by post-translational
prossessing of the PVA precursor. PVA forms a
homotetramer.
Length = 303
Score = 26.8 bits (60), Expect = 9.7
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 73 VDPNLKDGDGATPLHFAAS 91
VD + PLH+ S
Sbjct: 128 VDDPINLLGPVPPLHWIIS 146
Score = 26.8 bits (60), Expect = 9.7
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 134 VDPNLKDGDGATPLHFAAS 152
VD + PLH+ S
Sbjct: 128 VDDPINLLGPVPPLHWIIS 146
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.421
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,485,878
Number of extensions: 940391
Number of successful extensions: 676
Number of sequences better than 10.0: 1
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 79
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)