RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14140
(207 letters)
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 116 bits (292), Expect = 6e-32
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
G N D TPL A G DCV LL++G + P+ SPI++AA +E
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVEC 172
Query: 130 R----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 185
G + + K TPL+ A CV+ LL G + K SP++
Sbjct: 173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRT 232
Query: 186 QQMEV 190
E+
Sbjct: 233 ASEEL 237
Score = 98.7 bits (247), Expect = 2e-25
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 28/121 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
QG N+ D +PLH A GH CV+ LL
Sbjct: 80 SQGWAVNIITADHVSPLHEACLGGHLSCVKILL--------------------------- 112
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 189
G N D TPL A G DCV LL++G + P+ SPI++AA +E
Sbjct: 113 -KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVE 171
Query: 190 V 190
Sbjct: 172 C 172
Score = 96.4 bits (241), Expect = 2e-24
Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 21/144 (14%)
Query: 35 LLVQHGTLPDYHEEAKLHGKLHGCT-----CRKGESTKVR---DQGVDPNLKDGDGATPL 86
LL+QHG A + + + R+G V G + + K TPL
Sbjct: 143 LLLQHG--------ASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL 194
Query: 87 HFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR----DQGVDPNLKDGD 142
+ A CV+ LL G + K SP++ E+ D G D K+ +
Sbjct: 195 YLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAE 254
Query: 143 GATPLHFAASRGHADCVRWLLRYG 166
G P+ + +L R G
Sbjct: 255 GKRPVELVPPESPLAQL-FLEREG 277
Score = 87.5 bits (218), Expect = 3e-21
Identities = 32/162 (19%), Positives = 52/162 (32%), Gaps = 32/162 (19%)
Query: 31 NCLSLLVQHGTLPDYHEEAKLHGKLHGCT-CRKGESTKVRDQGVDPNLKDGDGATPLHFA 89
+ S LV G G + G + +R +P+H A
Sbjct: 9 HHSSGLVPRG--SHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEA 66
Query: 90 ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHF 149
A GH +R L+ QG N+ D +PLH
Sbjct: 67 AIHGHQLSLRNLI----------------------------SQGWAVNIITADHVSPLHE 98
Query: 150 AASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
A GH CV+ LL++G ++ +P+ +A + +
Sbjct: 99 ACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDC 140
Score = 65.2 bits (160), Expect = 5e-13
Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 10/109 (9%)
Query: 89 AASRGHADCVRWLLRYG------GKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGD 142
+S H L+ G G P + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSN---PLMGDAVS 58
Query: 143 GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
+P+H AA GH +R L+ G + + SP+++A +
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSC 107
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 114 bits (287), Expect = 2e-31
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
G N D TPL A G DCV LL++G + P+ SPI++AA +E
Sbjct: 57 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVEC 116
Query: 130 R----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 185
G + + K TPL+ A CV+ LL G + K SP++ A
Sbjct: 117 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVART 176
Query: 186 QQMEV 190
E+
Sbjct: 177 ASEEL 181
Score = 99.0 bits (248), Expect = 1e-25
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 28/121 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
QG N+ D +PLH A GH CV+ LL
Sbjct: 24 SQGWAVNIITADHVSPLHEACLGGHLSCVKILL--------------------------- 56
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 189
G N D TPL A G DCV LL++G + P+ SPI++AA +E
Sbjct: 57 -KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVE 115
Query: 190 V 190
Sbjct: 116 C 116
Score = 92.5 bits (231), Expect = 4e-23
Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 15/141 (10%)
Query: 32 CLSLLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPL 86
C++ L+ +G D H L+ C + V+ + G D N + +PL
Sbjct: 116 CVNSLIAYGGNID---HKISHLGTPLY-LACENQQRACVKKLLESGADVN-QGKGQDSPL 170
Query: 87 HFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR---DQGVDPNLKDGD 142
H A + L+ +G + GK P+ + + ++ P+L
Sbjct: 171 HAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGPPSLMQLC 229
Query: 143 GATPLHFAASRGHADCVRWLL 163
+ H + +L
Sbjct: 230 RLRIRKCFGIQQHHKITKLVL 250
Score = 90.2 bits (225), Expect = 3e-22
Identities = 31/160 (19%), Positives = 48/160 (30%), Gaps = 46/160 (28%)
Query: 35 LLVQHGTLPDYHEEAKLHGKLHGCT-----CRKGESTKVR---DQGVDPNLKDGDGATPL 86
LL+QHG A + + + R+G V G + + K TPL
Sbjct: 87 LLLQHG--------ASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL 138
Query: 87 HFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATP 146
+ A CV+ LL + G D N + +P
Sbjct: 139 YLACENQQRACVKKLL----------------------------ESGADVN-QGKGQDSP 169
Query: 147 LHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
LH A + L+ +G + GK P+
Sbjct: 170 LHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 209
Score = 80.6 bits (200), Expect = 9e-19
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 29/111 (26%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
+P+H AA GH +R L+ QG N+
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLI----------------------------SQGWAVNIIT 33
Query: 141 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
D +PLH A GH CV+ LL++G ++ +P+ +A + +
Sbjct: 34 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDC 84
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 111 bits (280), Expect = 9e-31
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 16/151 (10%)
Query: 55 LHGCTCRKGESTKVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG----G 106
LH C + E KV+ + KD DG PLH++ S + +LL
Sbjct: 6 LH-QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 107 KLVPDKFGKSPINDAAENQQMEV------RDQGVDPNLKDGDGATPLHFAASRGHADCVR 160
PD G +P + A +EV R D N G T LH A + + +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 161 WLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
+L+ G + + DKF + P++ AA +++
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Score = 87.1 bits (217), Expect = 2e-21
Identities = 32/141 (22%), Positives = 46/141 (32%), Gaps = 17/141 (12%)
Query: 35 LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
L PD ++ G LH K + + G +KD PLH A
Sbjct: 90 SLYDRPLKPDLNKITN-QGVTCLH-LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 90 ASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQMEV-----RDQGVDPNLKDGD 142
AS G + L G V DK G +P+ A + G + +L D
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
Query: 143 GATPLHFAASRGHADCVRWLL 163
GA A + ++ L
Sbjct: 208 GAKAEDVAL---NEQVKKFFL 225
Score = 73.3 bits (181), Expect = 3e-16
Identities = 24/113 (21%), Positives = 33/113 (29%), Gaps = 31/113 (27%)
Query: 82 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDG 141
PLH A V+ LL + KD
Sbjct: 2 SNYPLHQACMENEFFKVQELL---------------------------HSKPSLLLQKDQ 34
Query: 142 DGATPLHFAASRGHADCVRWLLRYG----GKLVPDKFGKSPINDAAENQQMEV 190
DG PLH++ S + +LL PD G +P + A +EV
Sbjct: 35 DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 103 bits (259), Expect = 4e-28
Identities = 46/127 (36%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
G D N +D G TPLH AA GH + V LL+ G + D G +P+ AA +E
Sbjct: 35 ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLE 94
Query: 129 VR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
+ G D N D +G TPLH AA GH + V LL+ G + DKFGK+ + +
Sbjct: 95 IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154
Query: 184 ENQQMEV 190
+N ++
Sbjct: 155 DNGNEDL 161
Score = 78.6 bits (195), Expect = 9e-19
Identities = 34/122 (27%), Positives = 45/122 (36%), Gaps = 30/122 (24%)
Query: 71 QGVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+G + G D L AA G D VR L+
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILM--------------------------- 34
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
G D N +D G TPLH AA GH + V LL+ G + D G +P+ AA +
Sbjct: 35 -ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHL 93
Query: 189 EV 190
E+
Sbjct: 94 EI 95
Score = 75.5 bits (187), Expect = 1e-17
Identities = 25/96 (26%), Positives = 31/96 (32%), Gaps = 28/96 (29%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
G D N D +G TPLH AA GH + V LL
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL--------------------------- 133
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
G D N +D G T + G+ D L +
Sbjct: 134 -KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 103 bits (260), Expect = 1e-27
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL--VPDKFGKSPINDAAENQQM 127
+D ++ DG T LH A + + V+ LL G + V K G+SP+ A EN +
Sbjct: 104 PGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163
Query: 128 EVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
+ G + N + G++ LH A+ RG VR L+R G + + +P+ A
Sbjct: 164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Query: 183 AENQQMEV 190
+ +++
Sbjct: 224 RSRRVIDI 231
Score = 88.7 bits (221), Expect = 6e-22
Identities = 23/126 (18%), Positives = 34/126 (26%), Gaps = 33/126 (26%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
G + ++ + TPLH A VR L+
Sbjct: 34 QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV--------------------------- 66
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP-----DKFGKSPINDAAE 184
G P D G T H A C+R LL + G + ++ A
Sbjct: 67 -TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125
Query: 185 NQQMEV 190
+ E
Sbjct: 126 TECQET 131
Score = 85.6 bits (213), Expect = 1e-20
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 25/116 (21%)
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVD 135
D DG TPLH A +G+ V L+ + G +
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNL------------------------FQQGGRE 38
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
++ + TPLH A VR L+ G D+ G++ + A E++
Sbjct: 39 LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTC 94
Score = 81.7 bits (203), Expect = 3e-19
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 28/97 (28%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
G + N + G++ LH A+ RG VR L+
Sbjct: 171 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLV--------------------------- 203
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
G D +LK+ TPL A SR D +R
Sbjct: 204 -RSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 100 bits (253), Expect = 3e-27
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
Q V+ +G +TPLHFAA V +LL++G + DK G P+++A EV
Sbjct: 31 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV 90
Query: 130 R----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAE 184
G N+ D TPLH AA++G + + LL++G ++ G +P++ +
Sbjct: 91 AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 150
Query: 185 N 185
Sbjct: 151 G 151
Score = 70.5 bits (174), Expect = 8e-16
Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 29/97 (29%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
G N+ D TPLH AA++G + + LL
Sbjct: 96 KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL--------------------------- 128
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
G DP K+ DG TPL G D L
Sbjct: 129 -QHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDA 163
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 100 bits (252), Expect = 3e-27
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 7/127 (5%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
G D G +PLH AA GH LLR G K ++P++ AA
Sbjct: 23 ANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN 81
Query: 129 VR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
+ G D N KD T LH+A H + V L++YG + KF K+ + +
Sbjct: 82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI 141
Query: 184 ENQQMEV 190
+N ++
Sbjct: 142 DNGNEDL 148
Score = 94.4 bits (236), Expect = 6e-25
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR----DQGVDP 136
D L AA G D VR L+ G D G SP++ AA+ GV
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 137 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
+ + TPLH AAS GHA+ V LL++G + D + ++ A E+ EV
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV 115
Score = 89.8 bits (224), Expect = 3e-23
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
GV + + TPLH AAS GHA+ V LL++G + D + ++ A E+ E
Sbjct: 55 RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114
Query: 129 V----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
V G D + + T + G+ D L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 99.8 bits (250), Expect = 1e-26
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 79 DGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQMEVR----DQ 132
+ + G+A VR L + D G SP++ A + V +
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 133 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
G N+ + TPLH AAS GH D V+ LL+Y + ++ G P++ A Q +V
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 120
Score = 81.3 bits (202), Expect = 9e-20
Identities = 17/116 (14%), Positives = 27/116 (23%), Gaps = 33/116 (28%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
D N + G PLH+A G L+
Sbjct: 93 QYKADINAVNEHGNVPLHYACFWGQDQVAEDLV--------------------------- 125
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 185
G ++ + G P+ A + + G L + P D
Sbjct: 126 -ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL-----NRIPYKDTFWK 175
Score = 54.4 bits (132), Expect = 1e-09
Identities = 16/126 (12%), Positives = 27/126 (21%), Gaps = 43/126 (34%)
Query: 35 LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
L+Q+ + HG LH C G+ G ++ + G P+ A
Sbjct: 90 KLLQYKADIN---AVNEHGNVPLH-YACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Query: 90 ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHF 149
+ G + N P
Sbjct: 146 KAPLRELLRERAE----------------------------KMGQNLN------RIPYKD 171
Query: 150 AASRGH 155
+G
Sbjct: 172 TFWKGT 177
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 99.5 bits (249), Expect = 4e-26
Identities = 32/176 (18%), Positives = 58/176 (32%), Gaps = 24/176 (13%)
Query: 35 LLVQHG---TLPDYHEEAKLHGKLHGCTCRKG--ESTKV-------RDQGVDPNLKDGDG 82
L+ G L D+ LH C +G S V + +G
Sbjct: 63 ALLGAGCDPELRDFRGNTPLH-----LACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117
Query: 83 ATPLHFAASRGHADCVRWLLRYGGKL-VPDKF-GKSPINDAAENQQMEVR----DQGVDP 136
T LH A+ G+ V L+ G + + G++ ++ A + Q ++ G D
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 177
Query: 137 NLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQMEVS 191
N G +P R + L + + L + + E++ E +
Sbjct: 178 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 95.3 bits (238), Expect = 2e-24
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 16/129 (12%)
Query: 78 KDGDGATPLHFAASRGH----ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV--- 129
DG + LH A + +R + L + ++P++ A Q E+
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 130 -RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-------VPDKFGKSPIND 181
G DP L+D G TPLH A +G V L + + G + ++
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123
Query: 182 AAENQQMEV 190
A+ + + +
Sbjct: 124 ASIHGYLGI 132
Score = 60.6 bits (148), Expect = 1e-11
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 9/104 (8%)
Query: 32 CLSLLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPL 86
+ LLV G D + + +G+ LH V G D N G +P
Sbjct: 132 IVELLVSLGA--DVNAQEPCNGRTALH-LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY 188
Query: 87 HFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQMEV 129
R + L + + L + + E++ E
Sbjct: 189 QLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEF 232
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 100 bits (252), Expect = 4e-26
Identities = 41/182 (22%), Positives = 64/182 (35%), Gaps = 27/182 (14%)
Query: 35 LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
L+ +Y + G+ LH GE++ V G + + G T LH A
Sbjct: 27 FLLGFSAGHEYLDLQNDLGQTALH-LAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
Query: 90 ASRGHADCVRWLLRYG---GKLVPDKFGKSPIND------------AAENQQMEVR---- 130
C LL+ + D + + + N + E
Sbjct: 86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE 145
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDK-FGKSPINDAAENQQM 188
D + ++ DG TPLH A A+ VR L G L P+ G++P++ A E Q
Sbjct: 146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205
Query: 189 EV 190
V
Sbjct: 206 SV 207
Score = 94.9 bits (237), Expect = 6e-24
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP----DKFGKSPINDAAENQQMEVR- 130
DG T LH A H + +LL + + G++ ++ AA +
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 131 ---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
G + + G T LH A C LL+
Sbjct: 63 KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101
Score = 89.5 bits (223), Expect = 5e-22
Identities = 27/123 (21%), Positives = 36/123 (29%), Gaps = 30/123 (24%)
Query: 70 DQGVDPNLKDGD-GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
D G D N + G TPLH A A + LL
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL-------------------------- 212
Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQ 187
G DP + G TPL A R + R L +G SP + + +
Sbjct: 213 --KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270
Query: 188 MEV 190
+
Sbjct: 271 SDN 273
Score = 80.7 bits (200), Expect = 1e-18
Identities = 25/137 (18%), Positives = 36/137 (26%), Gaps = 36/137 (26%)
Query: 35 LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
LL G D ++ G+ LH ++ + G DP + G TPL A
Sbjct: 176 LLRDAGA--DLNKPEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Query: 90 ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHF 149
R + R L G GD +P
Sbjct: 233 LLRPNPILARLLR----------------------------AHGAPEPEDGGDKLSPCSS 264
Query: 150 AASRGHADCVRWLLRYG 166
+ S +D Y
Sbjct: 265 SGSDSDSDNRDEGDEYD 281
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 102 bits (256), Expect = 4e-26
Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 14/133 (10%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV- 129
P + + LH A+ G + R ++ + ++ ++ A N E
Sbjct: 83 NLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKS 141
Query: 130 -----------RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKS 177
G D N D D TPL A V +L++ G + +K +S
Sbjct: 142 EDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS 201
Query: 178 PINDAAENQQMEV 190
++ AA N+ +
Sbjct: 202 ALHQAAANRDFGM 214
Score = 97.7 bits (244), Expect = 2e-24
Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 20/141 (14%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
G D N D D TPL A V +L++ G + +K +S ++ AA N+
Sbjct: 154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG 213
Query: 129 V-------RDQGVDPNLKDGDGATPLHFAASRGHADCV---RWLLRYG---------GKL 169
+ D D +G T L A D V + L+ G K
Sbjct: 214 MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD 273
Query: 170 VPDKFGKSPINDAAENQQMEV 190
G++ ++ AA+ M +
Sbjct: 274 SEKYKGRTALHYAAQVSNMPI 294
Score = 94.2 bits (235), Expect = 3e-23
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 18/140 (12%)
Query: 69 RDQGVDPNLKDGDGATPLHFAASRGHADCV---RWLLRYG---------GKLVPDKFGKS 116
D D +G T L A D V + L+ G K G++
Sbjct: 222 TKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT 281
Query: 117 PINDAAENQQMEV-----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
++ AA+ M + ++G + + +D DG TP+ AA G + V +L++ G +
Sbjct: 282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA 341
Query: 171 PDKFGKSPINDAAENQQMEV 190
D + A N +
Sbjct: 342 VDATDHTARQLAQANNHHNI 361
Score = 80.8 bits (200), Expect = 3e-18
Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 13/125 (10%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
++ + L A+ G+ + + P N +
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQ--------RNELQHYSLYPNPQGYGNGNDFL 76
Query: 130 RD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 185
D P + + LH A+ G + R ++ + ++ ++ A N
Sbjct: 77 GDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHNRTVLHWIASN 135
Query: 186 QQMEV 190
E
Sbjct: 136 SSAEK 140
Score = 79.6 bits (197), Expect = 7e-18
Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 14/128 (10%)
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR---D 131
N P G+ + P+ ++ A
Sbjct: 55 NELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITR 114
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP---------DKFGKSPINDA 182
+ V+ T LH+ AS A+ L+ + K D +P+ A
Sbjct: 115 ESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA 173
Query: 183 AENQQMEV 190
++ +
Sbjct: 174 VLARRRRL 181
Score = 78.5 bits (194), Expect = 2e-17
Identities = 29/143 (20%), Positives = 44/143 (30%), Gaps = 40/143 (27%)
Query: 35 LLVQHG-----TLPDYHEEAKLHGK--LHGCTCRKG--ESTK--VRDQGVDPNLKDGDGA 83
LLV+ G + K G+ LH + K V ++G + + +D DG
Sbjct: 256 LLVEKGAKVDYDGAARKDSEKYKGRTALH-YAAQVSNMPIVKYLVGEKGSNKDKQDEDGK 314
Query: 84 TPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDG 143
TP+ AA G + V +L+ QG D
Sbjct: 315 TPIMLAAQEGRIEVVMYLI----------------------------QQGASVEAVDATD 346
Query: 144 ATPLHFAASRGHADCVRWLLRYG 166
T A + H + V R
Sbjct: 347 HTARQLAQANNHHNIVDIFDRCR 369
Score = 37.2 bits (87), Expect = 0.002
Identities = 7/64 (10%), Positives = 15/64 (23%), Gaps = 8/64 (12%)
Query: 127 MEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQ 186
ME ++ + L A+ G+ + + P N
Sbjct: 21 MENEEKNRKNHQSITSSQHSLLEASYDGYIKRQ--------RNELQHYSLYPNPQGYGNG 72
Query: 187 QMEV 190
+
Sbjct: 73 NDFL 76
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 99.1 bits (248), Expect = 8e-26
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 6/125 (4%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR 130
D + + DG TPL AA + L+ + D GKS ++ AA ++
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 131 ----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
G + ++++ TPL AA G + + LL + + D + P + A E
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233
Query: 186 QQMEV 190
++
Sbjct: 234 MHHDI 238
Score = 85.6 bits (213), Expect = 1e-20
Identities = 29/124 (23%), Positives = 40/124 (32%), Gaps = 31/124 (25%)
Query: 70 DQGVD-PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
QG N D G T LH AA +D + LL
Sbjct: 44 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-------------------------- 77
Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQ 186
+ D N++D G TPLH A S + L+R + G +P+ AA
Sbjct: 78 --EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 135
Query: 187 QMEV 190
+
Sbjct: 136 VEGM 139
Score = 80.6 bits (200), Expect = 9e-19
Identities = 31/124 (25%), Positives = 42/124 (33%), Gaps = 25/124 (20%)
Query: 73 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR-- 130
+D N++ DG TPL A+ G G N E V
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGG-------------------GLETGNSEEEEDAPAVISD 41
Query: 131 --DQGVD-PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ 186
QG N D G T LH AA +D + LL + D G++P++ A
Sbjct: 42 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101
Query: 187 QMEV 190
V
Sbjct: 102 AQGV 105
Score = 78.7 bits (195), Expect = 4e-18
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 28/98 (28%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
G + ++++ TPL AA G + + LL
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLL--------------------------- 210
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
D + ++ D P A R H D VR L
Sbjct: 211 -DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 97.9 bits (245), Expect = 1e-25
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 6/125 (4%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR 130
D + + DG TPL AA + L+ + D GKS ++ AA ++
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 141
Query: 131 ----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
G + ++++ TPL AA G + + LL + + D + P + A E
Sbjct: 142 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 201
Query: 186 QQMEV 190
++
Sbjct: 202 MHHDI 206
Score = 84.4 bits (210), Expect = 2e-20
Identities = 29/124 (23%), Positives = 40/124 (32%), Gaps = 31/124 (25%)
Query: 70 DQGVD-PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
QG N D G T LH AA +D + LL
Sbjct: 12 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-------------------------- 45
Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQ 186
+ D N++D G TPLH A S + L+R + G +P+ AA
Sbjct: 46 --EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103
Query: 187 QMEV 190
+
Sbjct: 104 VEGM 107
Score = 77.1 bits (191), Expect = 1e-17
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 28/97 (28%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
G + ++++ TPL AA G + + LL
Sbjct: 146 KNGANKDMQNNREETPLFLAAREGSYETAKVLL--------------------------- 178
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
D + ++ D P A R H D VR L Y
Sbjct: 179 -DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 94.8 bits (237), Expect = 2e-25
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
G DPN+KD G TPLH A + GH V LL++ + SP++DAA+N ++
Sbjct: 31 QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVD 90
Query: 129 V----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
+ G N + G P+ + + +
Sbjct: 91 IVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132
Score = 89.0 bits (222), Expect = 4e-23
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 30/120 (25%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
G+DP + G T LH A+ +G V +LL
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLL----------------------------Q 31
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
G DPN+KD G TPLH A + GH V LL++ + SP++DAA+N +++
Sbjct: 32 NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDI 91
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 96.6 bits (241), Expect = 6e-25
Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 9/130 (6%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
+ DP+ + +G T LH A + V +L+ G + PD G +P++ AA
Sbjct: 42 KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTV 101
Query: 129 V----RDQGVDPNLKDG-DGATPLHFAAS--RGHADCVRWLLRYGGKL-VPDKFGKSPIN 180
+ G DGAT G+ADC +L + + + +
Sbjct: 102 ICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW 161
Query: 181 DAAENQQMEV 190
D + E+
Sbjct: 162 DYSAEFGDEL 171
Score = 81.9 bits (203), Expect = 2e-19
Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 32/124 (25%)
Query: 71 QGVDPNLKD---GDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM 127
+ P + L AA G + V+ +
Sbjct: 7 KAGSPRKARRARLNPLVLLLDAALTGELEVVQQAV------------------------- 41
Query: 128 EVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ 186
+ DP+ + +G T LH A + V +L+ G + PD G +P++ AA
Sbjct: 42 ---KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN 98
Query: 187 QMEV 190
+
Sbjct: 99 DTVI 102
Score = 79.2 bits (196), Expect = 2e-18
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 70 DQGVDPNLKDG-DGATPLHFAAS--RGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ 125
G DGAT G+ADC +L + + + + D +
Sbjct: 108 QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF 167
Query: 126 QMEVR---DQGVDPNLKDGDGATPLHFAASRGHADCV 159
E+ + V +DG T +AA G V
Sbjct: 168 GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 95.1 bits (237), Expect = 6e-25
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 18/115 (15%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHAD------CVRWLLRYGGKL-VPDKFGKSPINDAA 122
++G D + +G T G D + L G + K K +
Sbjct: 63 NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122
Query: 123 ENQQMEVRD-----------QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
N ++ + G+ +KD G T L F ++ + Y
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177
Score = 86.3 bits (214), Expect = 2e-21
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 15/136 (11%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR--------DQ 132
+ AA G + L G + + + D N E R ++
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 133 GVDPNLKDGDGATPLHFAASRGHAD------CVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
G D + +G T G D + L G + K K + N
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124
Query: 186 QQMEVSTVSPVVRRLL 201
++ + + P+ + +
Sbjct: 125 YFVDENEMIPLYKLIF 140
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 96.5 bits (241), Expect = 7e-25
Identities = 23/117 (19%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 79 DGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV----RDQGV 134
+ G L + +G ++ + + + D++ + ++ +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 135 DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
DP+L + +G T LH A GH + V++L+++G + D G +P++ AA ++V
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Score = 85.4 bits (212), Expect = 1e-20
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 32/125 (25%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+ DP+L + +G T LH A GH + V++L+
Sbjct: 58 YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV--------------------------- 90
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG----GKLVPDKFGKSPINDAAEN 185
GV+ N D DG TPLH AAS + ++L+ G D + + E
Sbjct: 91 -QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 149
Query: 186 QQMEV 190
+
Sbjct: 150 GYTQC 154
Score = 62.2 bits (152), Expect = 4e-12
Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 110 PDKFGKSPINDAAENQQMEVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
P+ G+ + + G+ L ++ G D V+ ++
Sbjct: 1 PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYE 59
Query: 166 GGKL-VPDKFGKSPINDAAENQQMEV 190
+P+ G + +++A E+
Sbjct: 60 VDDPSLPNDEGITALHNAVCAGHTEI 85
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 95.7 bits (239), Expect = 1e-24
Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 24/145 (16%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP------DKFGKSPINDAAE 123
+G + + + G T LH AA + + L+ +LV G++ ++ A
Sbjct: 25 FEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVI 84
Query: 124 NQQME-VR---DQGVDPNLKDGD-------------GATPLHFAASRGHADCVRWLLRYG 166
NQ + VR +G + + G PL FAA G + VR L+ +G
Sbjct: 85 NQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG 144
Query: 167 GKL-VPDKFGKSPINDAAENQQMEV 190
+ D G + ++
Sbjct: 145 ADIRAQDSLGNTVLHILILQPNKTF 169
Score = 90.0 bits (224), Expect = 2e-22
Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 29/146 (19%)
Query: 74 DPNLKDGDGATPLHFAASRGHADCVRWLLRYG--------------GKLVPDKFGKSPIN 119
+ +G T LH A + + VR LL G +G+ P++
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126
Query: 120 DAAENQQMEVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRW----LLRYG----- 166
AA E+ + G D +D G T LH + + LL Y
Sbjct: 127 FAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHL 186
Query: 167 --GKLVPDKFGKSPINDAAENQQMEV 190
+LVP+ G +P A + +
Sbjct: 187 KSLELVPNNQGLTPFKLAGVEGNIVM 212
Score = 76.5 bits (189), Expect = 2e-17
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 29/136 (21%)
Query: 70 DQGVDPNLKDGD-------------GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK 115
+G + + G PL FAA G + VR L+ +G + D G
Sbjct: 96 ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN 155
Query: 116 SPINDAAENQQMEVRDQ--------GVDPNLK------DGDGATPLHFAASRGHADCVRW 161
+ ++ Q +LK + G TP A G+ +
Sbjct: 156 TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQH 215
Query: 162 LLRYGGKL-VPDKFGK 176
L++ +
Sbjct: 216 LMQKRKHIAAAHHHHH 231
Score = 38.7 bits (91), Expect = 5e-04
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 143 GATPLHFAASRGHADCVRWLLRYGG-----KLVPDKFGKSPINDAAENQQMEV 190
+PL AA + LL++ G + G++ ++ AA +E
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQR---GAMGETALHIAALYDNLEA 52
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 95.7 bits (238), Expect = 1e-24
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
D D T LH+A S GH + V +LL+ G + D G SP++ AA E
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE 87
Query: 129 VR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
+ +G N + +G TPLH+AAS+ + LL G D + + ++ AA
Sbjct: 88 IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA 147
Query: 184 ENQQMEVSTV 193
+++ +
Sbjct: 148 AKGNLKMVHI 157
Score = 86.8 bits (215), Expect = 2e-21
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 15/165 (9%)
Query: 35 LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
L+Q G + + G LH G V+ +G N + +G TPLH+A
Sbjct: 58 FLLQLGVPVN---DKDDAGWSPLH-IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113
Query: 90 ASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR----DQGVDPNLKDGDGA 144
AS+ + LL G D + + ++ AA +++ N++D +G
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN 173
Query: 145 TPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
TPLH A + ++L+ G + + +K K+P+ A +
Sbjct: 174 TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGL 218
Score = 66.4 bits (162), Expect = 1e-13
Identities = 23/114 (20%), Positives = 34/114 (29%), Gaps = 29/114 (25%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
+ A S + +L D
Sbjct: 6 SNIMICNLAYSGKLDELKERIL----------------------------ADKSLATRTD 37
Query: 141 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTV 193
D T LH+A S GH + V +LL+ G + D G SP++ AA E+
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91
Score = 51.4 bits (123), Expect = 3e-08
Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 31 NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVR-DQGVDPNLKDGDGATPLHFA 89
+L++ G PD + + + N++D +G TPLH A
Sbjct: 120 EIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Query: 90 ASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR---DQGVDPNL 138
+ ++L+ G + + +K K+P+ A + + +G + ++
Sbjct: 180 CDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGL-ILKRLAEGEEASM 231
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 92.8 bits (232), Expect = 1e-24
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 71 QGVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
+G + G D L AA G D VR L+ G + D++G +P+ A + +E
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61
Query: 129 VR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
+ G D N D G TPLH AA GH + LL++G + DKFGK+ + +
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121
Query: 184 ENQQMEV 190
N ++
Sbjct: 122 GNGNEDL 128
Score = 88.2 bits (220), Expect = 1e-22
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
G D N KD G TPL+ A + GH + V LL+ G + D G +P++ AA +E+
Sbjct: 36 NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEI 95
Query: 130 R----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
G D N +D G T + G+ D L +
Sbjct: 96 AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 45.1 bits (108), Expect = 1e-06
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 104
G D N +D G T + G+ D L +
Sbjct: 101 KHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 93.6 bits (234), Expect = 1e-24
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 29/122 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+ G DP++ + + L A++ G+ D V LL
Sbjct: 57 EWGADPHILAKERESALSLASTGGYTDIVGLLL--------------------------- 89
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
++ VD N+ D +G TPL +A H CV LL G L G +P++ A
Sbjct: 90 -ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 189 EV 190
+V
Sbjct: 149 KV 150
Score = 91.7 bits (229), Expect = 9e-24
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 29/110 (26%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
++ VD N+ D +G TPL +A H CV LL
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL--------------------------- 122
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSP 178
+G D + G TP+ A + G+ + + + KL + P
Sbjct: 123 -ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 97.9 bits (245), Expect = 2e-24
Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 29/122 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
GV + G TPLH A+ G+ V++LL
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL--------------------------- 331
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
D N K G +PLH AA +GH D V LL+ G G +P+ A +
Sbjct: 332 -QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 390
Query: 189 EV 190
V
Sbjct: 391 SV 392
Score = 95.6 bits (239), Expect = 2e-23
Identities = 29/122 (23%), Positives = 41/122 (33%), Gaps = 29/122 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+ +PNL G TPLH AA GH + V LL
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALL--------------------------- 133
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
++ G TPLH AA G LL K G +P++ A + +
Sbjct: 134 -EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 189 EV 190
++
Sbjct: 193 DI 194
Score = 95.3 bits (238), Expect = 3e-23
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+G P+ +G TPLH AA + + R LL
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL--------------------------- 232
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
G N + G TPLH AA GHA+ V LL + +K G +P++ A+ +
Sbjct: 233 -QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV 291
Query: 189 EV 190
V
Sbjct: 292 PV 293
Score = 94.5 bits (236), Expect = 5e-23
Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 29/121 (23%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
G+ G TPLH A+ GH V+ LL
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLL---------------------------- 34
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 189
+G PN+ + TPLH AA GH + ++LL+ K+ K ++P++ AA
Sbjct: 35 QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN 94
Query: 190 V 190
+
Sbjct: 95 M 95
Score = 84.9 bits (211), Expect = 1e-19
Identities = 31/114 (27%), Positives = 35/114 (30%), Gaps = 32/114 (28%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
D N K G +PLH AA +GH D V LL
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL--------------------------- 364
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK----LVPDKFGKSPI 179
G PN DG TPL A G+ L + LV DK S
Sbjct: 365 -KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 417
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 93.8 bits (234), Expect = 5e-24
Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 10/126 (7%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
+ D T S+G + + +P+++AA+ +
Sbjct: 34 EEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ----AESIDNPLHEAAKRGNLSWL 89
Query: 131 ----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAE 184
D V N D G+T L++A GH D V L + +K G + ++ AA
Sbjct: 90 RECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149
Query: 185 NQQMEV 190
++
Sbjct: 150 KGYADI 155
Score = 86.1 bits (214), Expect = 4e-21
Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 3/118 (2%)
Query: 75 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRDQG 133
P G + A L G + + + +
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL-IPS 63
Query: 134 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
+ PLH AA RG+ +R L + DK G + + A ++
Sbjct: 64 NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDI 121
Score = 82.3 bits (204), Expect = 1e-19
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 29/115 (25%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
++ N ++ G T LH AA +G+AD V+ LL
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLL----------------------------A 161
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG-GKLVPDKFGKSPINDAAEN 185
+G +L++ + A + A ++ + + + D+
Sbjct: 162 KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLE 216
Score = 66.1 bits (162), Expect = 1e-13
Identities = 6/88 (6%), Positives = 17/88 (19%), Gaps = 28/88 (31%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+G +L++ + A + A ++
Sbjct: 161 AKGARTDLRNIEKKLAFDMATNAACASLLKKKQ--------------------------- 193
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHAD 157
L + + + H
Sbjct: 194 -GTDAVRTLSNAEDYLDDEDSDLEHHHH 220
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 95.6 bits (239), Expect = 7e-24
Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 17/128 (13%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
G DP L + G + + A + + + + + G S + A E +V
Sbjct: 145 SHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK----------GHSLLQAAREADLAKV 194
Query: 130 R---DQGVDPNLKDGDGATPLHFAASRGHA---DCVRWLLRYGGKL-VPDKFGKSPINDA 182
+ + + T LH A + H LLR G + +K +P++ A
Sbjct: 195 KKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVA 254
Query: 183 AENQQMEV 190
AE +V
Sbjct: 255 AERAHNDV 262
Score = 90.6 bits (226), Expect = 6e-22
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 29/122 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
V+ + DG +TPLH AA V+ LL
Sbjct: 46 PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL--------------------------- 78
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
G D + KD G PLH A S GH + LL++G + D + +P+++AA ++
Sbjct: 79 -QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV 137
Query: 189 EV 190
EV
Sbjct: 138 EV 139
Score = 89.5 bits (223), Expect = 2e-21
Identities = 32/117 (27%), Positives = 38/117 (32%), Gaps = 29/117 (24%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+G + N K+ D TPLH AA R H D + L
Sbjct: 235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH--------------------------- 267
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
G N D G T LH AA GH R LL YG + G + E
Sbjct: 268 -KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEA 323
Score = 82.9 bits (206), Expect = 4e-19
Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 28/122 (22%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
D L L AA G+ + + LL
Sbjct: 12 DPSAKAVLTGEYKKDELLEAARSGNEEKLMALL--------------------------- 44
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
V+ + DG +TPLH AA V+ LL++G + DK G P+++A
Sbjct: 45 TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHY 104
Query: 189 EV 190
EV
Sbjct: 105 EV 106
Score = 79.1 bits (196), Expect = 1e-17
Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
G N D G T LH AA GH R LL YG + G + E Q
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQI 327
Query: 129 VRDQGVDPNLKDGDGATPLHFAASRG 154
+ + D D L A+ G
Sbjct: 328 L-SESTPMRTSDVDY--RLLEASKAG 350
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 92.2 bits (230), Expect = 9e-24
Identities = 29/122 (23%), Positives = 42/122 (34%), Gaps = 30/122 (24%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
+ D + D +G T L F A G CVR L
Sbjct: 65 EDRDVDAVDENGRTALLFVAGLGSDKCVRLLA---------------------------- 96
Query: 131 DQGVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
+ G D + +D G T LH AA + V L+ G + V D+ G + + A E +
Sbjct: 97 EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT 156
Query: 189 EV 190
Sbjct: 157 TP 158
Score = 67.9 bits (167), Expect = 1e-14
Identities = 15/120 (12%), Positives = 27/120 (22%), Gaps = 31/120 (25%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
+ + G+GA GH+
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSS---------------------------- 34
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 190
D + TP AA + + LL D+ G++ + A +
Sbjct: 35 YIAADVV---SEYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKC 91
Score = 51.7 bits (125), Expect = 1e-08
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 105
+ G D ++D G T L A +++G
Sbjct: 131 ELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 166
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 91.3 bits (228), Expect = 1e-23
Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 29/122 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
G DP L + L A S+G+ D V+ LL
Sbjct: 57 QNGADPQLLGKGRESALSLACSKGYTDIVKMLL--------------------------- 89
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
D GVD N D +G TPL +A H CV+ LL G + G + ++ A
Sbjct: 90 -DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 189 EV 190
V
Sbjct: 149 SV 150
Score = 85.5 bits (213), Expect = 2e-21
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 28/100 (28%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
D GVD N D +G TPL +A H CV+ LL
Sbjct: 90 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL--------------------------- 122
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
+ G DP ++ G + A + G+ + + + KL
Sbjct: 123 -ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161
Score = 80.5 bits (200), Expect = 2e-19
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 29/112 (25%)
Query: 80 GDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLK 139
G + +H A++G + + +Q N
Sbjct: 1 GANSLSVHQLAAQGEMLYLATRI----------------------------EQENVINHT 32
Query: 140 DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
D +G TPL +AA+ G V +LL+ G + K +S ++ A ++
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 84
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 91.1 bits (227), Expect = 8e-23
Identities = 29/122 (23%), Positives = 42/122 (34%), Gaps = 30/122 (24%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
+ D + D +G T L F A G CVR L
Sbjct: 66 EDRDVDAVDENGRTALLFVAGLGSDKCVRLLA---------------------------- 97
Query: 131 DQGVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
+ G D + +D G T LH AA + V L+ G + V D+ G + + A E +
Sbjct: 98 EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT 157
Query: 189 EV 190
Sbjct: 158 TP 159
Score = 87.3 bits (217), Expect = 2e-21
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD---Q 132
+ G+GA GH+ Y V + ++P AA + +
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWV-PSSYIAADVVSE-YETPWWTAARKADEQALSQLLE 66
Query: 133 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL--VPDKFGKSPINDAAENQQMEV 190
D + D +G T L F A G CVR L G L + G + ++ AA + EV
Sbjct: 67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 126
Score = 78.4 bits (194), Expect = 5e-18
Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 6/97 (6%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+ G D ++D G T L A +++G ++ + + + EV
Sbjct: 132 ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI--GLEKVINVLEGQVFEYAEV 189
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
+ K G G + + DC +
Sbjct: 190 ----DEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHV 222
Score = 51.1 bits (123), Expect = 4e-08
Identities = 11/121 (9%), Positives = 23/121 (19%), Gaps = 40/121 (33%)
Query: 35 LLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGH 94
+Q G + + + + K G G + +
Sbjct: 162 NPMQFGRRIGLEKVINVLEG----------QVFEYAEVDEIVEKRGKGKDVEYLVRWKDG 211
Query: 95 ADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRG 154
DC + + KD + L +A +
Sbjct: 212 GDCEWVKGVHVA----------------------------EDVAKDYE--DGLEYAVAES 241
Query: 155 H 155
Sbjct: 242 V 242
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 89.8 bits (224), Expect = 1e-22
Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 30/123 (24%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
D + D +G TPL+ A + + L+
Sbjct: 27 DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI--------------------------- 59
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQ 187
D+G D NL++ +P +A ++G + + ++L++ + +++G + + AAE
Sbjct: 60 -DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118
Query: 188 MEV 190
++
Sbjct: 119 IDN 121
Score = 77.9 bits (193), Expect = 3e-18
Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 29/115 (25%)
Query: 77 LKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDP 136
+K + L A R L D
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQ----------------------------DTTYQV 32
Query: 137 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
+ D +G TPL+ A + + L+ G + + + SP A + E+
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEI 87
Score = 77.1 bits (191), Expect = 6e-18
Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 33/125 (26%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
D N + G L AA +GH D V+ LL G
Sbjct: 96 TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR------------------------- 130
Query: 132 QGVDPNLKDGDGATPLHFAA-----SRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
D + ++ G T L A ++ + D V+ L+ G + D G++ ++ A +
Sbjct: 131 --EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK 188
Query: 186 QQMEV 190
E+
Sbjct: 189 GYTEI 193
Score = 70.6 bits (174), Expect = 2e-15
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 33/98 (33%)
Query: 73 VDPNLKDGDGATPLHFAA-----SRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM 127
D + ++ G T L A ++ + D V+ L+
Sbjct: 131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM------------------------- 165
Query: 128 EVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
+ G D ++KD G T + +A +G+ + + L +Y
Sbjct: 166 ---ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 50.9 bits (123), Expect = 2e-08
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 104
+ G D ++KD G T + +A +G+ + + L +Y
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 88.2 bits (220), Expect = 1e-22
Identities = 30/120 (25%), Positives = 43/120 (35%), Gaps = 30/120 (25%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
V P+ + G T L G LL
Sbjct: 26 LVHPDALNRFGKTALQVMM-FGSTAIALELL----------------------------K 56
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
QG PN++D G +P+H AA G D ++ L+ +G + VPD G PI+ A + V
Sbjct: 57 QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 116
Score = 88.2 bits (220), Expect = 1e-22
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 28/121 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
QG PN++D G +P+H AA G D ++ L+
Sbjct: 56 KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV--------------------------- 88
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 189
+ G D N+ DG GA P+H A GH V +L D G +P+ A + +
Sbjct: 89 -EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQD 147
Query: 190 V 190
+
Sbjct: 148 L 148
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 88.2 bits (220), Expect = 2e-22
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 30/123 (24%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+G +P+LKD G +H AA G D ++ LL
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL--------------------------- 90
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQ 187
+ D N++D +G PLH AA GH V +L+++ V + G + + A +
Sbjct: 91 -EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149
Query: 188 MEV 190
EV
Sbjct: 150 NEV 152
Score = 81.7 bits (203), Expect = 6e-20
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 30/122 (24%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
V+ N ++G G T L G+ + R LL
Sbjct: 26 QNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLL--------------------------- 57
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
+G +P+LKD G +H AA G D ++ LL + + + D G P++ AA+ +
Sbjct: 58 -LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
Query: 189 EV 190
V
Sbjct: 117 RV 118
Score = 72.4 bits (179), Expect = 2e-16
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 30/111 (27%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
L AA+RG + + LL V+ N ++
Sbjct: 4 PWGNELASAAARGDLEQLTSLL----------------------------QNNVNVNAQN 35
Query: 141 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
G G T L G+ + R LL G + D+ G + I+DAA ++
Sbjct: 36 GFGRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT 85
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 86.7 bits (216), Expect = 2e-22
Identities = 29/122 (23%), Positives = 38/122 (31%), Gaps = 29/122 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+G D N G PLH+AA G + + +LL
Sbjct: 28 AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL--------------------------- 60
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
+G D N D TPL A GH CV+ LL G V G +
Sbjct: 61 -LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIK 119
Query: 189 EV 190
+
Sbjct: 120 AL 121
Score = 80.1 bits (199), Expect = 7e-20
Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 29/111 (26%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
+A G D V+ + +G D N
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYV----------------------------AKGEDVNRTL 37
Query: 141 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
G PLH+AA G + + +LL G + PDK +P+ A +
Sbjct: 38 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 88
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 89.4 bits (223), Expect = 3e-22
Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 29/122 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+G D N++D + LH+AA G D LL
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILL--------------------------- 164
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
D + + G +PLH AA DCV L + + +K G++P+ A+ N Q+
Sbjct: 165 -AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223
Query: 189 EV 190
Sbjct: 224 WS 225
Score = 87.1 bits (217), Expect = 2e-21
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 30/123 (24%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
G + + D TPL AA H + V++L+
Sbjct: 32 QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI--------------------------- 64
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQ 187
G + KD +G+T LH AA +GH + V++LL G V D G +P+ A E +
Sbjct: 65 -KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 188 MEV 190
+++
Sbjct: 124 VDL 126
Score = 86.7 bits (216), Expect = 3e-21
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 29/119 (24%)
Query: 73 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQ 132
++ ++ + +PLH AA GH D L+
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLV----------------------------QA 33
Query: 133 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
G + + D TPL AA H + V++L++ G + D G + ++ AA+ EV
Sbjct: 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV 92
Score = 79.4 bits (197), Expect = 2e-18
Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 28/97 (28%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
D + + G +PLH AA DCV L
Sbjct: 165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL--------------------------- 197
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
+ D LK+ +G TPL A+ + +
Sbjct: 198 -SRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 89.5 bits (223), Expect = 7e-22
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 29/125 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
++ G T LH AA++G+ + ++ L+
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI--------------------------- 219
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
D N+KD DG TPLH AA G + R L+ + +K G++ + A E+
Sbjct: 220 -QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILG 278
Query: 189 EVSTV 193
+ +
Sbjct: 279 YLEEL 283
Score = 88.7 bits (221), Expect = 2e-21
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 29/122 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
++G D N + DG T LH A + D V++L+
Sbjct: 61 ERGADINYANVDGLTALHQACIDDNVDMVKFLV--------------------------- 93
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG-KLVPDKFGKSPINDAAENQQM 188
+ G + N D +G PLH AAS G+ D +L+ G + G +P++ A E
Sbjct: 94 -ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME 152
Query: 189 EV 190
E+
Sbjct: 153 EL 154
Score = 85.2 bits (212), Expect = 3e-20
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 5/120 (4%)
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR---D 131
+ D G + + K V G + + EV +
Sbjct: 2 KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE 61
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
+G D N + DG T LH A + D V++L+ G + PD G P++ AA +++
Sbjct: 62 RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI 121
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 89.1 bits (222), Expect = 1e-21
Identities = 31/132 (23%), Positives = 44/132 (33%), Gaps = 39/132 (29%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
G DP L+ +GATP AA G ++ L
Sbjct: 60 RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL--------------------------- 92
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG-----------GKLVPDKFGKSP 178
+G D N D G T AA G +++L + G + K G +
Sbjct: 93 -SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151
Query: 179 INDAAENQQMEV 190
+ DAAE +EV
Sbjct: 152 LMDAAEKGHVEV 163
Score = 86.8 bits (216), Expect = 6e-21
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 30/123 (24%)
Query: 70 DQGVDPNLKDGD-GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
+ G + N ++ + G TPLH A D V LL
Sbjct: 26 EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL-------------------------- 59
Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQ 187
G DP L+ +GATP AA G ++ L G + D +G + +AA +
Sbjct: 60 --RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117
Query: 188 MEV 190
++
Sbjct: 118 VKA 120
Score = 82.9 bits (206), Expect = 2e-19
Identities = 37/173 (21%), Positives = 54/173 (31%), Gaps = 44/173 (25%)
Query: 35 LLVQHG---TLPDYHEEAKLHGKLHGCT-----CRKG--ESTK--VRDQGVDPNLKDGDG 82
L + G L +E + + G T KG E K + + G D N D G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182
Query: 83 ATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGD 142
L A V + L+ D G D N++
Sbjct: 183 RNALIHALLSSDDSDVEAITHL---LL---------------------DHGADVNVRGER 218
Query: 143 GATPLHFAASRGHADCVRWLLRYGG-----KLVPDKFGKSPINDAAENQQMEV 190
G TPL A + H V+ LL D GK+ + A E + ++
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDT---DSDGKTALLLAVELKLKKI 268
Score = 77.9 bits (193), Expect = 1e-17
Identities = 22/97 (22%), Positives = 29/97 (29%), Gaps = 27/97 (27%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
D G D N++ G TPL A + H V+ LL
Sbjct: 207 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE------------------------ 242
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
++ N D DG T L A L + G
Sbjct: 243 ---HIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276
Score = 72.9 bits (180), Expect = 9e-16
Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 30/112 (26%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
+ L A D V+ LL + G + N ++
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLL----------------------------EGGANVNFQE 35
Query: 141 GD-GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
+ G TPLH A D V LLR+G + K G +P AA +++
Sbjct: 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKL 87
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 84.8 bits (211), Expect = 2e-21
Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 31/121 (25%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
++ G L AA+RG + VR LL +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLL----------------------------E 33
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK-SPINDAAENQQME 189
G DPN + G P+ G A LL +G + D P++DAA ++
Sbjct: 34 AGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD 92
Query: 190 V 190
Sbjct: 93 T 93
Score = 82.9 bits (206), Expect = 1e-20
Identities = 22/98 (22%), Positives = 30/98 (30%), Gaps = 29/98 (29%)
Query: 70 DQGVDPNLKDGDGAT-PLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
G +PN D T P+H AA G D + L
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-------------------------- 98
Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
G ++ D G P+ A +GH D R+L
Sbjct: 99 --RAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 85.2 bits (212), Expect = 2e-21
Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 33/122 (27%)
Query: 70 DQGVDPNLKDGDGAT-PLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
G +PN D T P+H AA G D + L
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-------------------------- 98
Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM 188
G +++D G P+ A GH D R+L G G + A
Sbjct: 99 --RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG----GTRGSNHARIDAAEGPS 152
Query: 189 EV 190
++
Sbjct: 153 DI 154
Score = 81.0 bits (201), Expect = 8e-20
Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 33/123 (26%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+ +++ L AA+RG + VR LL
Sbjct: 2 EPAAGSSMEPSA--DWLATAAARGRVEEVRALL--------------------------- 32
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK-SPINDAAENQQ 187
+ G +PN + G P+ G A LL +G + D P++DAA
Sbjct: 33 -EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF 90
Query: 188 MEV 190
++
Sbjct: 91 LDT 93
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 88.8 bits (221), Expect = 3e-21
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 29/119 (24%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
++ D + +H AA +G D VR L+ +
Sbjct: 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLI----------------------------E 41
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 190
GV P +++ G T LH A G D ++L G G+ PI+ A + ++
Sbjct: 42 TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV-HSLWHGQKPIHLAVMANKTDL 99
Score = 84.9 bits (211), Expect = 8e-20
Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 42/140 (30%)
Query: 65 STKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 124
T + + + G + LH+A D +
Sbjct: 194 DTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV---------------------- 231
Query: 125 QQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK--------------LV 170
+ G+D N++D + PL+ + + LL+ L
Sbjct: 232 ------EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP 285
Query: 171 PDKFGKSPINDAAENQQMEV 190
+ AA+ + EV
Sbjct: 286 DRVVWLDFVPAAADPSKQEV 305
Score = 83.4 bits (207), Expect = 3e-19
Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 19/130 (14%)
Query: 70 DQGVDPNLKDGDGATPLHFAA------------SRGHADCVRWLLRYGGK--LVPDKFGK 115
+ G+D N++D + PL+ + + ++ + G L
Sbjct: 232 EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWL 291
Query: 116 SPINDAAENQQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
+ AA+ + EV +++ + GA + R L +
Sbjct: 292 DFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRT 351
Query: 171 PDKFGKSPIN 180
+
Sbjct: 352 RSRSRARSSA 361
Score = 82.2 bits (204), Expect = 7e-19
Identities = 21/158 (13%), Positives = 37/158 (23%), Gaps = 42/158 (26%)
Query: 70 DQGVDPNLKDG-------------------------DGATPLHFAASRGHADCVRWLLRY 104
G +L G G P +
Sbjct: 74 SVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNE----- 128
Query: 105 GGKLVPDKFGKSPINDAAENQQMEVR------DQGVDPNLKDGDGATPLHFAASRGHADC 158
G V G++ ++ + G P KD TPL A + +
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREA 188
Query: 159 VRWLLRYGGKL------VPDKFGKSPINDAAENQQMEV 190
+ ++ +K G S ++ A +V
Sbjct: 189 LDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV 226
Score = 75.7 bits (187), Expect = 2e-16
Identities = 7/84 (8%), Positives = 16/84 (19%), Gaps = 5/84 (5%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV- 129
G + AA + ++ L ++ G + V
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339
Query: 130 ---RDQGVDPNLKDGDGATPLHFA 150
+ A +
Sbjct: 340 RMKLAPSAPVRTRSRSRARSSAVS 363
Score = 32.5 bits (75), Expect = 0.074
Identities = 6/60 (10%), Positives = 11/60 (18%), Gaps = 9/60 (15%)
Query: 35 LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
LL + + G +K R + A +
Sbjct: 308 LLQEKLDEVV---RSLNTGAGGAV-KRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 86.7 bits (216), Expect = 4e-21
Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 39/164 (23%)
Query: 35 LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
+ G + LH R+G + V G DP+L DG+G + +H A
Sbjct: 60 YYISKG--AIVDQLGGDLNSTPLH-WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA 116
Query: 90 ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHF 149
A GH V +L+ +G D ++ D +G TPL +
Sbjct: 117 AQFGHTSIVAYLI----------------------------AKGQDVDMMDQNGMTPLMW 148
Query: 150 AASRGH-ADCVRWLLRYGGKL-VPDKF-GKSPINDAAENQQMEV 190
AA R H D R LL + + + DK+ + ++ A V
Sbjct: 149 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTV 192
Score = 79.4 bits (197), Expect = 2e-18
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 30/117 (25%)
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVD 135
D + A G + R L+ + G D
Sbjct: 3 THIDDYSTWDIVKATQYGIYERCRELV----------------------------EAGYD 34
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL--VPDKFGKSPINDAAENQQMEV 190
D + T LH+AA D V++ + G + + +P++ A + +
Sbjct: 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSM 91
Score = 76.7 bits (190), Expect = 2e-17
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 29/98 (29%)
Query: 70 DQGVDPNLKD-GDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
V NL D T LH+A G+ + LL
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL-------------------------- 197
Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
+ G + + ++ G + L A R + + L
Sbjct: 198 --EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233
Score = 52.4 bits (127), Expect = 1e-08
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Query: 35 LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
LL+ + K H LH G +T + + G + + ++ G + L A
Sbjct: 161 LLLTFN--VSVNLGDKYHKNTALH-WAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
Query: 90 ASRGHADCVRWLLRYG 105
R + + L
Sbjct: 218 KQRKNVWMINHLQEAR 233
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 87.2 bits (217), Expect = 5e-21
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 31/121 (25%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
D D G + ++A + + V LL
Sbjct: 20 SSKDTFKADVHGHSASYYAIADNNVRLVCTLL---------------------------- 51
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 189
+ G NL + + PLH AA+ V+ LL G D G + + A ++ M+
Sbjct: 52 NAGALKNLLENE--FPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQ 109
Query: 190 V 190
Sbjct: 110 T 110
Score = 84.1 bits (209), Expect = 6e-20
Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 32/123 (26%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+ G NL + + PLH AA+ V+ LL
Sbjct: 52 NAGALKNLLENE--FPLHQAATLEDTKIVKILL--------------------------- 82
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG-KSPINDAAENQQ 187
G+D + D G T L++A G+ V+ ++ +L K G K+ A
Sbjct: 83 -FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141
Query: 188 MEV 190
+ +
Sbjct: 142 VSI 144
Score = 71.8 bits (177), Expect = 2e-15
Identities = 14/118 (11%), Positives = 25/118 (21%), Gaps = 35/118 (29%)
Query: 74 DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQG 133
+ +H GH D + LL D
Sbjct: 153 PSTFDLAILLSCIHITIKNGHVDMMILLL----------------------------DYM 184
Query: 134 VDPNLKDGDGATP-LHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 190
N + P + A + ++ L +Y S + E+
Sbjct: 185 TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN------IYSANLENVLLDDAEI 236
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 81.2 bits (202), Expect = 1e-20
Identities = 35/97 (36%), Positives = 43/97 (44%), Gaps = 28/97 (28%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+ G D N KD +G TPLH AA GH + V+ LL
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--------------------------- 55
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
+ G D N KD +G TPLH AA GH + V+ LL G
Sbjct: 56 -EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 78.2 bits (194), Expect = 2e-19
Identities = 39/111 (35%), Positives = 52/111 (46%), Gaps = 29/111 (26%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
+G TPLH AA GH + V+ LL + G D N KD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL----------------------------EAGADVNAKD 32
Query: 141 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
+G TPLH AA GH + V+ LL G + DK G++P++ AA N +EV
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 83
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 81.5 bits (202), Expect = 1e-20
Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 32/122 (26%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+G D L AA G D VR L+
Sbjct: 15 PRGSHMG---SDLGKKLLEAARAGQDDEVRILM--------------------------- 44
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG-KLVPDKFGKSPINDAAENQQM 188
G D KD +G+TPLH AA GH + V+ LL G DKFGK+ + + +N
Sbjct: 45 -ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNE 103
Query: 189 EV 190
++
Sbjct: 104 DL 105
Score = 65.7 bits (161), Expect = 2e-14
Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 28/93 (30%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
G D KD +G+TPLH AA GH + V+ LL
Sbjct: 45 ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL--------------------------- 77
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
+ G D +D G T + G+ D L
Sbjct: 78 -EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 80.5 bits (200), Expect = 5e-20
Identities = 35/97 (36%), Positives = 43/97 (44%), Gaps = 28/97 (28%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+ G D N KD +G TPLH AA GH + V+ LL
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--------------------------- 88
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
+ G D N KD +G TPLH AA GH + V+ LL G
Sbjct: 89 -EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 76.6 bits (190), Expect = 2e-18
Identities = 39/111 (35%), Positives = 52/111 (46%), Gaps = 29/111 (26%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
+G TPLH AA GH + V+ LL + G D N KD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL----------------------------EAGADVNAKD 32
Query: 141 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
+G TPLH AA GH + V+ LL G + DK G++P++ AA N +EV
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 83
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 79.3 bits (197), Expect = 1e-19
Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 29/110 (26%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+G D N + DG TPLH AA GHA+ V+ LL
Sbjct: 30 SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL--------------------------- 62
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSP 178
+G D N + DG TP H A GH + V+ L G +
Sbjct: 63 -AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111
Score = 77.8 bits (193), Expect = 5e-19
Identities = 38/116 (32%), Positives = 49/116 (42%), Gaps = 29/116 (25%)
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVD 135
DG TPLH AA GHA+ V+ LL +G D
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLL----------------------------SKGAD 34
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
N + DG TPLH AA GHA+ V+ LL G + K G +P + A +N E+
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEI 90
Score = 60.5 bits (148), Expect = 2e-12
Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 28/79 (35%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+G D N + DG TP H A GH + V+ L
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD--------------------------- 95
Query: 130 RDQGVDPNLKDGDGATPLH 148
+G D N + + H
Sbjct: 96 -AKGADVNARSWGSSHHHH 113
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 80.1 bits (199), Expect = 4e-19
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+ KD +G+T L +A LL
Sbjct: 56 ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL--------------------------- 88
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
+G + N KD G TPL ++ G+++ +LL +G + + G++P+ A++ +
Sbjct: 89 -SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147
Query: 189 EV 190
E+
Sbjct: 148 EI 149
Score = 78.6 bits (195), Expect = 2e-18
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 10/120 (8%)
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR----D 131
+ D +G + + +L Y D + ++P+ A +
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRNYR-----DSYNRTPLMVACMLGMENAIDKLVE 56
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
KD +G+T L +A LL G + D GK+P+ + E+
Sbjct: 57 NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEM 116
Score = 72.0 bits (178), Expect = 4e-16
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 28/94 (29%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
+ G + N ++ +G TPL A+ G ++ V+ LL
Sbjct: 122 EHGANVNDRNLEGETPLIVASKYGRSEIVKKLL--------------------------- 154
Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLL 163
+ G D + +D G T A G + ++
Sbjct: 155 -ELGADISARDLTGLTAEASARIFGRQEVIKIFT 187
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 74.8 bits (184), Expect = 1e-16
Identities = 21/120 (17%), Positives = 33/120 (27%), Gaps = 19/120 (15%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
+ G + LH A + CV+ L+ G A + + R
Sbjct: 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG---------------ADVHLRACGRF 124
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP----DKFGKSPINDAAENQQ 187
G PL AA D V +LL + D G + ++
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184
Score = 71.0 bits (174), Expect = 3e-15
Identities = 25/140 (17%), Positives = 41/140 (29%), Gaps = 36/140 (25%)
Query: 69 RDQGVDPNLKDGDGATPLHFAA---SRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 124
+ + G T L A G C+ LL+ P + D
Sbjct: 30 KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD---- 85
Query: 125 QQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG--------------GKLV 170
+ G + LH A + CV+ L+ G +
Sbjct: 86 --------------EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGT 131
Query: 171 PDKFGKSPINDAAENQQMEV 190
FG+ P++ AA +Q +V
Sbjct: 132 CFYFGELPLSLAACTKQWDV 151
Score = 71.0 bits (174), Expect = 3e-15
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 20/102 (19%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV- 129
Q D G T LH + S + + +++
Sbjct: 161 QPASLEATDSLGNTVLHALVMIAD----------------NSPENSALVIHMYDGLLQMG 204
Query: 130 ---RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK 168
+ + G TPL AA G + R +L+
Sbjct: 205 ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246
Score = 52.5 bits (126), Expect = 1e-08
Identities = 19/122 (15%), Positives = 31/122 (25%), Gaps = 35/122 (28%)
Query: 84 TPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDG 143
L SRG + + LL Y + + + G
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYL--------------------RWNSKYLTDSAYTEGSTG 43
Query: 144 ATPLHFAA---SRGHADCVRWLLRYGGKLVP------------DKFGKSPINDAAENQQM 188
T L A G C+ LL+ G S ++ A E + +
Sbjct: 44 KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSL 103
Query: 189 EV 190
+
Sbjct: 104 QC 105
Score = 47.5 bits (113), Expect = 6e-07
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK 107
+ + G TPL AA G + R +L+
Sbjct: 209 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 74.7 bits (183), Expect = 3e-16
Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 22/136 (16%)
Query: 72 GVDPNLKDGDGATPLHFAA----SRGHADCVR--------WLLRYGGKLVP--DKFGKSP 117
L+D T LH G + + W+++ + + +S
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250
Query: 118 INDAAENQQMEV-------RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
ND ++ + N +D +G T L+ AA G+ V LL YG
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 310
Query: 170 VPDKFGKSPINDAAEN 185
+ +K G P++ A
Sbjct: 311 IANKSGLRPVDFGAGL 326
Score = 72.4 bits (177), Expect = 2e-15
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 34/122 (27%)
Query: 70 DQGVDPNLK-DGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
+ ++ N+ D G TPLH+ S + + V+ L+
Sbjct: 118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV-------------------------- 151
Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHA---DCVRWLLRYGGKLV--PDKFGKSPINDAA 183
G + D G + L A + LL Y + D ++ ++
Sbjct: 152 --KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII 209
Query: 184 EN 185
Sbjct: 210 IT 211
Score = 68.9 bits (168), Expect = 3e-14
Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 33/131 (25%)
Query: 26 RLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-----VRDQGVDPNLKDG 80
+ L + +V+ P + K + + +S N +D
Sbjct: 222 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 281
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
+G T L+ AA G+ V LL D G DP + +
Sbjct: 282 NGDTCLNIAARLGNISIVDALL----------------------------DYGADPFIAN 313
Query: 141 GDGATPLHFAA 151
G P+ F A
Sbjct: 314 KSGLRPVDFGA 324
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 73.7 bits (181), Expect = 3e-16
Identities = 28/140 (20%), Positives = 39/140 (27%), Gaps = 36/140 (25%)
Query: 70 DQGVDPNLKDGD-GATPLHFA---ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQ 125
+ D KD + G T L A G D + LL K K
Sbjct: 41 KRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK------------- 87
Query: 126 QMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG---------------GKLV 170
+ G T LH A R + V L+ G
Sbjct: 88 ----QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRP 143
Query: 171 PDKFGKSPINDAAENQQMEV 190
FG+ P++ AA Q+ +
Sbjct: 144 GFYFGELPLSLAACTNQLAI 163
Score = 69.8 bits (171), Expect = 1e-14
Identities = 24/137 (17%), Positives = 39/137 (28%), Gaps = 42/137 (30%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
+ G PL AA V++LL+
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW------------------------ 172
Query: 131 DQGVDPNLKDGDGATPLHFAASRGH---------ADCVRWLLRYGGKL--------VPDK 173
Q D + +D G T LH +L G KL + ++
Sbjct: 173 -QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR 231
Query: 174 FGKSPINDAAENQQMEV 190
G +P+ AA + ++ V
Sbjct: 232 KGLTPLALAASSGKIGV 248
Score = 68.7 bits (168), Expect = 3e-14
Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 18/115 (15%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
Q D + +D G T LH G ++
Sbjct: 173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA------------KLH 220
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 185
+ + G TPL AAS G + ++L+ + AA +
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE------IHEPECRHAAAHH 269
Score = 62.1 bits (151), Expect = 6e-12
Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 37/135 (27%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
+ A ++ + + LL + +
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSK---------------------K 41
Query: 132 QGVDPNLKDGD-GATPLHFA---ASRGHADCVRWLLRYGGKLVP------------DKFG 175
+ D KD + G T L A G D + LL K G
Sbjct: 42 RLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKG 101
Query: 176 KSPINDAAENQQMEV 190
++ ++ A E + M +
Sbjct: 102 QTALHIAIERRNMTL 116
Score = 55.9 bits (135), Expect = 7e-10
Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 35/91 (38%)
Query: 67 KVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQ 126
K+ + + G TPL AAS G + ++L+
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ----------------------- 254
Query: 127 MEVRDQGVDPNLKDGDGATPLHFAASRGHAD 157
++ H AA H
Sbjct: 255 ------------REIHEPECRHAAAHHHHHH 273
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 66.7 bits (163), Expect = 1e-13
Identities = 29/144 (20%), Positives = 39/144 (27%), Gaps = 41/144 (28%)
Query: 70 DQGVDPNLKDG----DGATPLHFAA---SRGHADCVRWLLRYGGKLV-PDKFGKSPINDA 121
++ G T L A S G D + LL K +F SP D
Sbjct: 30 THKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD- 88
Query: 122 AENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG--------------- 166
G T LH A R V L+ G
Sbjct: 89 -----------------VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPK 131
Query: 167 GKLVPDKFGKSPINDAAENQQMEV 190
+ FG+ P++ AA Q +
Sbjct: 132 DEGGYFYFGELPLSLAACTNQPHI 155
Score = 65.6 bits (160), Expect = 3e-13
Identities = 25/152 (16%), Positives = 40/152 (26%), Gaps = 56/152 (36%)
Query: 70 DQGVDPNLKD--------------GDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK 115
++G D + + G PL AA V +L G
Sbjct: 114 EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG---------- 163
Query: 116 SPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGH---------ADCVRWLLRYG 166
+ D +D G T LH + LL
Sbjct: 164 ---------------HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC 208
Query: 167 GKL--------VPDKFGKSPINDAAENQQMEV 190
KL + + G SP+ AA+ ++ +
Sbjct: 209 AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240
Score = 60.6 bits (147), Expect = 2e-11
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 12/98 (12%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
+ D +D G T LH + KF + ++
Sbjct: 165 KQADLRRQDSRGNTVLHALVAIAD-----------NTRENTKFVTKMYDLLLIKCA-KLF 212
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK 168
L + DG +PL AA G + ++R
Sbjct: 213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250
Score = 42.1 bits (99), Expect = 5e-05
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 67 KVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK 107
K+ L + DG +PL AA G + ++R
Sbjct: 210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 63.8 bits (155), Expect = 2e-12
Identities = 15/124 (12%), Positives = 26/124 (20%), Gaps = 35/124 (28%)
Query: 70 DQGVDPNLKD--GDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM 127
+ + + AA GH + L +A
Sbjct: 149 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP------------TEATAM--- 193
Query: 128 EVRDQGVDPNLKDGDGATPLHFAASR-GHADCVRWLLRYGGKLVPDKFGKSPINDAAENQ 186
+ +AA GH + + +LL L E
Sbjct: 194 -----------IQAENYYAFRWAAVGRGHHNVINFLLDCPVML------AYAEIHEFEYG 236
Query: 187 QMEV 190
+ V
Sbjct: 237 EKYV 240
Score = 59.2 bits (143), Expect = 9e-11
Identities = 19/132 (14%), Positives = 28/132 (21%), Gaps = 40/132 (30%)
Query: 76 NLKDGDGATPLHFAASRGHA---DCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQ 132
+ K AA G + D + LL
Sbjct: 86 HKKGIKSEVICFVAAITGCSSALDTLCLLL----------------------------TS 117
Query: 133 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV---PDKFGKSPINDAAENQQME 189
+ + AA GH + L + AAEN +
Sbjct: 118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH 177
Query: 190 VSTVSPVVRRLL 201
V+ RL
Sbjct: 178 ------VLNRLC 183
Score = 57.3 bits (138), Expect = 4e-10
Identities = 14/122 (11%), Positives = 25/122 (20%), Gaps = 22/122 (18%)
Query: 81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD--------- 131
+ + G D V G + + + D
Sbjct: 253 EMHDAFKLSNPDGVFDLVTKS--------ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304
Query: 132 ---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM 188
GD L A G+ LL L K + ++
Sbjct: 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK--ANNYYINETGGRL 362
Query: 189 EV 190
++
Sbjct: 363 DL 364
Score = 53.8 bits (129), Expect = 6e-09
Identities = 12/92 (13%), Positives = 17/92 (18%), Gaps = 20/92 (21%)
Query: 65 STKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 124
S GD L A G+ LL + +
Sbjct: 302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS-----------VLALTKA 350
Query: 125 QQMEVRDQGVDPNLKDGDGATPLHFAASRGHA 156
+ + G L A H
Sbjct: 351 NNYYINET---------GGRLDLRAVALEHHH 373
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 62.7 bits (152), Expect = 5e-12
Identities = 21/93 (22%), Positives = 29/93 (31%), Gaps = 29/93 (31%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
G + K DG T LH+AA DC++ LL+
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA------------------------- 250
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLR 164
+ G T L A + H +C LL
Sbjct: 251 ---LVGTVNEAGETALDIARKKHHKECEE-LLE 279
Score = 55.4 bits (133), Expect = 2e-09
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 32/113 (28%)
Query: 79 DGDGATPLHFAASRGHADC---VRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVD 135
LH A + V ++++ GG
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGG----------------------------H 218
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQ 187
+ K DG T LH+AA DC++ LL+ + ++ G++ ++ A +
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH 271
Score = 40.4 bits (94), Expect = 2e-04
Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 12/75 (16%)
Query: 35 LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVRDQ----GVDPNLKDGDGATPLHF 88
++Q+G D G LH + G T L
Sbjct: 211 FIIQNGGHLDAKAA---DGNTALHYAALYN--QPDCLKLLLKGRALVGTVNEAGETALDI 265
Query: 89 AASRGHADCVRWLLR 103
A + H +C LL
Sbjct: 266 ARKKHHKECEE-LLE 279
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 61.9 bits (150), Expect = 6e-12
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 28/94 (29%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
+ + + G G+T LH+ +A+C++ LLR
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA------------------------- 229
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
+ + G TPL A H C L +
Sbjct: 230 ---SIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 55.8 bits (134), Expect = 9e-10
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 32/118 (27%)
Query: 79 DGDGATPLHFAASRGHADCVR---WLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVD 135
T LH A + +L++ G +
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSG----------------------------N 197
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVST 192
+ + G G+T LH+ +A+C++ LLR + + ++ G++P++ A +
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 255
Score = 38.8 bits (90), Expect = 6e-04
Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 19 QAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVR---DQGVDP 75
A DR L LVQ+ D + K LH C C + ++
Sbjct: 175 LAVRSVDRTSLHIVD-FLVQNSGNLD-KQTGKGSTALHYC-CLTDNAECLKLLLRGKASI 231
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRY 104
+ + G TPL A H C L +
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQA 260
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 56.3 bits (135), Expect = 8e-10
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 72 GVDPNLKDG--DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
G D N +G D ATPL A + +LL+ G + D G+ P++ A
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTG 282
Query: 129 VRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAE 184
+ +G D +D +G PL A +AD V L + G++ +
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD 342
Score = 38.2 bits (88), Expect = 0.001
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 35 LLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKV-RDQGVDPNLKDGDGATPLHFAASRG 93
L+Q+G + + A H + +G D +D +G PL A
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 94 HADCVRWLLRYGGKLVPDKFGKSPINDAAE 123
+AD V L + G++ +
Sbjct: 313 NADIVTLLRLAKMREAEAAQGQAGDETYLD 342
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 52.2 bits (125), Expect = 3e-08
Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 38/126 (30%)
Query: 71 QGVDPNLK------DGDGATPLHFA---ASRGHADCVRWLLRYGGKLVPDKFGKSPINDA 121
G D LH A A++ V ++++ GG
Sbjct: 154 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG--------------- 198
Query: 122 AENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPIN 180
+ K DG T LH+AA DC++ LL+ + ++ G++ ++
Sbjct: 199 -------------HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 245
Query: 181 DAAENQ 186
A +
Sbjct: 246 IARKKH 251
Score = 50.7 bits (121), Expect = 7e-08
Identities = 20/91 (21%), Positives = 28/91 (30%), Gaps = 28/91 (30%)
Query: 72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
G + K DG T LH+AA DC++ LL+
Sbjct: 197 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKG--------------------------- 229
Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
+ G T L A + H +C L
Sbjct: 230 -RALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 36.4 bits (84), Expect = 0.004
Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 8/129 (6%)
Query: 35 LLVQHG---TLPDYHEEAKLHGKLHGCTCRKGESTKV-RDQGVDPNLKDGDGATPLHFAA 90
++Q+G LH + + + K+ + G T L A
Sbjct: 192 FIIQNGGHLDAKAADGNTALH---YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
Query: 91 SRGHADCVRWLLR-YGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHF 149
+ H +C L + G + EN + +
Sbjct: 249 KKHHKECEELLEQAQAGTFAFPLHVDYSWVISTENLSSDSSLSSPSALNSLSSPSALNST 308
Query: 150 AASRGHADC 158
A++ +
Sbjct: 309 ASNSPGIEG 317
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.001
Identities = 34/168 (20%), Positives = 54/168 (32%), Gaps = 64/168 (38%)
Query: 68 VRDQGVDPNLKDGDGATPLHFAASRGH-----------------ADCVRWLLRYGGKL-- 108
++ +G+ P AT FA GH V ++ Y G
Sbjct: 1747 LKSKGLIP-----ADAT---FA---GHSLGEYAALASLADVMSIESLVE-VVFYRGMTMQ 1794
Query: 109 --VP-DKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
VP D+ G+S A ++P G A A + V + +
Sbjct: 1795 VAVPRDELGRSNYGMIA-----------INP----GRVAASFSQEALQ---YVVERVGKR 1836
Query: 166 GGKLVPDKFGKSPINDAAENQQM----EVSTVSPVVRRL--LTIQKVP 207
G LV +N ENQQ ++ + V L + +QK+
Sbjct: 1837 TGWLV------EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID 1878
Score = 27.3 bits (60), Expect = 4.1
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 17/58 (29%)
Query: 145 TPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS-PINDAAENQQMEVSTVSPVVRRLL 201
T F AS+ L+ ++F K P E +T + +V + L
Sbjct: 24 TASFFIASQ---------LQ-------EQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Score = 26.6 bits (58), Expect = 8.0
Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 32/111 (28%)
Query: 18 SQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGE--STKVRDQGVDP 75
S A M + + + ++ G + E + ++P
Sbjct: 1772 SLADVMS----IESLVEVV-------------FYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQ 126
G A A + V + + G LV +N ENQQ
Sbjct: 1815 ----GRVAASFSQEALQ---YVVERVGKRTGWLV------EIVNYNVENQQ 1852
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 34.3 bits (78), Expect = 0.021
Identities = 7/48 (14%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 111 DKFGKSPINDAAENQQMEVRD---QGVDPNLKDGDGATPLHFAASRGH 155
+ P++ + Q++ +++ + V P + T ++ S G
Sbjct: 479 QRHSFGPLDYESLQQELALKETVWKKVSPESNEDISTTVVYRMESLGE 526
Score = 32.4 bits (73), Expect = 0.085
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 71 QGVDPNLKDGDGATPLHFAASRGH 94
+ V P + T ++ S G
Sbjct: 503 KKVSPESNEDISTTVVYRMESLGE 526
>2fno_A AGR_PAT_752P; thioredoxin fold, GST C-terminal domain-like fold,
structura genomics, joint center for structural
genomics, JCSG; 2.00A {Agrobacterium tumefaciens} SCOP:
a.45.1.1 c.47.1.5
Length = 248
Score = 29.1 bits (65), Expect = 0.93
Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 86 LHFAASRGHADCVRWLLRYGGKLVP--DKFGKSPINDAAENQQMEVRDQGVDPNLKDGDG 143
L++ +R +L + G + + + + P L D +
Sbjct: 22 LYYWPVPFRGQLIRGILAHCG--CSWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLIDRER 79
Query: 144 ATPLH 148
+
Sbjct: 80 NFAIS 84
Score = 27.5 bits (61), Expect = 3.2
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 147 LHFAASRGHADCVRWLLRYGG 167
L++ +R +L + G
Sbjct: 22 LYYWPVPFRGQLIRGILAHCG 42
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase;
HET: LLX NHE; 2.05A {Homo sapiens}
Length = 367
Score = 28.0 bits (63), Expect = 2.0
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 85 PL-HFAAS-RGHADCVRWLLRYGGKLV 109
L F + +GHA CV + + L+
Sbjct: 264 RLGCFNLTVKGHAKCVEVVKTFNLPLL 290
Score = 28.0 bits (63), Expect = 2.0
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 146 PL-HFAAS-RGHADCVRWLLRYGGKLV 170
L F + +GHA CV + + L+
Sbjct: 264 RLGCFNLTVKGHAKCVEVVKTFNLPLL 290
>2cvd_A Glutathione-requiring prostaglandin D synthase;
glutathione-S-transferase, isomerase; HET: GSH HQL;
1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB:
1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A*
2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*
Length = 198
Score = 27.7 bits (62), Expect = 2.5
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 75 PNLKDGDGATPLHFAASRGHADCVRWLLRYGG 106
PN K L + RG A+ +R++ Y
Sbjct: 1 PNYK-------LTYFNMRGRAEIIRYIFAYLD 25
Score = 27.7 bits (62), Expect = 2.5
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
PN K L + RG A+ +R++ Y
Sbjct: 1 PNYK-------LTYFNMRGRAEIIRYIFAYLD 25
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A
{Homo sapiens}
Length = 376
Score = 27.7 bits (62), Expect = 2.9
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 85 PL-HFAAS-RGHADCVRWLLRYGGKLV 109
L F S RGH +CV ++ + L+
Sbjct: 265 RLGCFNLSIRGHGECVEYVKSFNIPLL 291
Score = 27.7 bits (62), Expect = 2.9
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 146 PL-HFAAS-RGHADCVRWLLRYGGKLV 170
L F S RGH +CV ++ + L+
Sbjct: 265 RLGCFNLSIRGHGECVEYVKSFNIPLL 291
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta
fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2
PDB: 1c3r_A* 1c3s_A*
Length = 375
Score = 27.3 bits (61), Expect = 3.3
Identities = 5/27 (18%), Positives = 7/27 (25%), Gaps = 2/27 (7%)
Query: 85 PL-HFAAS-RGHADCVRWLLRYGGKLV 109
L F S + G+ V
Sbjct: 264 YLSKFNLSNVAFLKAFNIVREVFGEGV 290
Score = 27.3 bits (61), Expect = 3.3
Identities = 5/27 (18%), Positives = 7/27 (25%), Gaps = 2/27 (7%)
Query: 146 PL-HFAAS-RGHADCVRWLLRYGGKLV 170
L F S + G+ V
Sbjct: 264 YLSKFNLSNVAFLKAFNIVREVFGEGV 290
>3h1n_A Probable glutathione S-transferase; APC84167, bordetella
bronchisepti structural genomics, PSI-2, protein
structure initiative; 1.83A {Bordetella bronchiseptica
RB50}
Length = 252
Score = 27.1 bits (60), Expect = 3.4
Identities = 6/22 (27%), Positives = 8/22 (36%), Gaps = 1/22 (4%)
Query: 86 LH-FAASRGHADCVRWLLRYGG 106
L + G + VR L G
Sbjct: 24 LWYWDGIPGRGEFVRLALEAGK 45
Score = 27.1 bits (60), Expect = 3.4
Identities = 6/22 (27%), Positives = 8/22 (36%), Gaps = 1/22 (4%)
Query: 147 LH-FAASRGHADCVRWLLRYGG 167
L + G + VR L G
Sbjct: 24 LWYWDGIPGRGEFVRLALEAGK 45
>1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification
enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus
gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A*
Length = 219
Score = 27.1 bits (60), Expect = 3.5
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 92 RGHADCVRWLLRYGGKLVP--DK---FGKSPINDAAENQQMEVRDQ---GVDPNLKDGD 142
RG A +R LL Y P ++ G +P D ++ + + P L DGD
Sbjct: 10 RGLAHAIRLLLEYTE--TPYQERRYKAGPAPDFDPSDWTNEKEKLGLDFPNLPYLIDGD 66
>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene
family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1
c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A
3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A*
2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A*
2gst_A* ...
Length = 218
Score = 27.1 bits (60), Expect = 3.6
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 10/59 (16%)
Query: 92 RGHADCVRWLLRYGGKLVP--DK---FGKSPINDAAENQQMEVRDQ---GVDPNLKDGD 142
RG A +R LL Y +K G +P D ++ + + P L DG
Sbjct: 11 RGLAHSIRLLLEYTD--SSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGT 67
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme,
arginase fold, HDAC8, histon deacetylase, hydroxamate
inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens}
PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A*
2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A*
1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Length = 388
Score = 26.9 bits (60), Expect = 4.6
Identities = 5/27 (18%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 85 PL-HFAAS-RGHADCVRWLLRYGGKLV 109
P+ F + G C++++L++ +
Sbjct: 273 PMCSFNMTPVGIGKCLKYILQWQLATL 299
Score = 26.9 bits (60), Expect = 4.6
Identities = 5/27 (18%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 146 PL-HFAAS-RGHADCVRWLLRYGGKLV 170
P+ F + G C++++L++ +
Sbjct: 273 PMCSFNMTPVGIGKCLKYILQWQLATL 299
>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic,
heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1
c.47.1.5
Length = 224
Score = 26.7 bits (59), Expect = 5.5
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 92 RGHADCVRWLLRYGGKLVP--DK---FGKSPINDAAENQQMEVRDQ---GVDPNLKDGD 142
RG A +R LL + +K G++P D ++ ++ + P L DG
Sbjct: 14 RGLAHAIRLLLEFTD--TSYEEKRYTCGEAPDYDRSQWLDVKFKLDLDFPNLPYLLDGK 70
>2fxa_A Protease production regulatory protein HPR; protease porduction,
regulation, STR genomics, PSI, protein structure
initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis}
SCOP: a.4.5.28
Length = 207
Score = 26.5 bits (58), Expect = 5.7
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 175 GKSPINDAAENQQMEVSTVSPVVRRL 200
+ I++ A+ M VST ++L
Sbjct: 61 NGASISEIAKFGVMHVSTAFNFSKKL 86
>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione
transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis
elegans}
Length = 207
Score = 26.2 bits (58), Expect = 6.5
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 92 RGHADCVRWLLRYGG 106
RG + R + Y G
Sbjct: 12 RGAGEVSRQIFAYAG 26
Score = 26.2 bits (58), Expect = 6.5
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 153 RGHADCVRWLLRYGG 167
RG + R + Y G
Sbjct: 12 RGAGEVSRQIFAYAG 26
>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus}
SCOP: a.45.1.1 c.47.1.5
Length = 206
Score = 26.2 bits (58), Expect = 7.2
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 92 RGHADCVRWLLRYGG 106
RG +C R +
Sbjct: 12 RGAGECARQVFALAD 26
Score = 26.2 bits (58), Expect = 7.2
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 153 RGHADCVRWLLRYGG 167
RG +C R +
Sbjct: 12 RGAGECARQVFALAD 26
>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A
{Necator americanus}
Length = 206
Score = 26.2 bits (58), Expect = 7.3
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 92 RGHADCVRWLLRYGG 106
RG A+ +R + G
Sbjct: 12 RGLAEPIRQIFALAG 26
Score = 26.2 bits (58), Expect = 7.3
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 153 RGHADCVRWLLRYGG 167
RG A+ +R + G
Sbjct: 12 RGLAEPIRQIFALAG 26
>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator
americanus}
Length = 206
Score = 26.2 bits (58), Expect = 7.6
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 92 RGHADCVRWLLRYGG 106
RG +C R +
Sbjct: 12 RGAGECARQIFALAD 26
Score = 26.2 bits (58), Expect = 7.6
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 153 RGHADCVRWLLRYGG 167
RG +C R +
Sbjct: 12 RGAGECARQIFALAD 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.421
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,228,695
Number of extensions: 186302
Number of successful extensions: 1251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 276
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)