BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14141
(698 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 221 bits (564), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 132/303 (43%), Positives = 175/303 (57%), Gaps = 12/303 (3%)
Query: 365 FPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKP-KVIERY 423
FP L+PK ETGVLN L K+PEYDGR V IAIFDSGVDP A GL+ DGK KVIERY
Sbjct: 10 FPTGALVPKAETGVLNFLQKYPEYDGRDVTIAIFDSGVDPRATGLETLCDGKTVKVIERY 69
Query: 424 DCGGAGXXXXXXXXXXXXXNHITGLSGRKLKIPTSWK----NPTGDFHIGLKNVYELYPK 479
DC G G +I GLSG LK+ +P +GLK+ +L P
Sbjct: 70 DCSGCGDVDXKKKVTPDENGNIKGLSGNSLKLSPELXALNTDPEKAVRVGLKSFSDLLPS 129
Query: 480 LLQERIQKERKEKLWDPSHRKAQAEAQKNLQNF-IQKHADAKNLSRENKLLKEELESMVE 538
++ I + K K WD H+ A A A + + F Q +A L + K+LKE L+ +E
Sbjct: 130 KVRNNIVAQAKLKHWDKPHKTATANASRKIVEFESQNPGEASKLPWDKKILKENLDFELE 189
Query: 539 SLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLT 598
LN+ EK + D+ +YD ++F D W VDTTE GDL +GEY+ T + ++
Sbjct: 190 XLNSYEKVYG--DIKTSYDCILFPTADGWLTIVDTTEQGDLDQALRIGEYSRTHETRNVD 247
Query: 599 PADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCI- 657
D + S+NV++EGNVLE+VG S HGTHV+SIA+ + +GVAP A+I+S I
Sbjct: 248 --DFLSISVNVHDEGNVLEVVGXSSPHGTHVSSIASGNHSSR-DVDGVAPNAKIVSXTIG 304
Query: 658 DGK 660
DG+
Sbjct: 305 DGR 307
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/276 (43%), Positives = 172/276 (62%), Gaps = 12/276 (4%)
Query: 10 ETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFG 69
++Q NGTS +APH G VAL+IS L+QQ + YSPYSI+RA+ +TA + V+P+AQG G
Sbjct: 454 KSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVDPFAQGHG 513
Query: 70 LLQVEKALEWLEKYHAELESKVRFHVTCAGSSSKNKGIHLRVGDQQVPKEVNVSVEPVFA 129
LL VEKA E L ++ ++ +RF V ++ +KGIHLR G Q+ + NV +EP+F
Sbjct: 514 LLNVEKAFEHLTEHRQSKDNXLRFSVRVGNNA--DKGIHLRQGVQRNSIDYNVYIEPIFY 571
Query: 130 DSDNIVFDPEIKYNFQMSLSLTCSVPWVQFPNHLELMNISRQFNVKVDPSSLTPGVHNGT 189
+ DP+ K+NF + L+L S PWVQ L+L +R V+VDP+ L PGVH+
Sbjct: 572 NDKEA--DPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIAVRVDPTGLQPGVHSAV 629
Query: 190 IFAFDSNKPEKGHVFSVEVTVVKPIVLGSN---PSSKPAVSW--DQVDFKANTTKHHFVL 244
I A+D++ +KG +F + VTVV+P VL S+ P +PA S + V+F+ NT + F+L
Sbjct: 630 IRAYDTDCVQKGSLFEIPVTVVQPHVLESDQNTPVFEPASSKGDNSVEFQPNTIQRDFIL 689
Query: 245 VPKEATIAVLKIR---SNSLEAQGKFILHCTQHKPK 277
VP+ AT A L+ R N E GKF +H Q PK
Sbjct: 690 VPERATWAELRXRITDPNRGEDIGKFFVHTNQLLPK 725
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 644 NGVAPGAQIISLCIDGKP-KVIERYDCGGAGXXXXXXXXXXXXXNHITGLSGRKLK 698
+GV P A + DGK KVIERYDC G G +I GLSG LK
Sbjct: 45 SGVDPRATGLETLCDGKTVKVIERYDCSGCGDVDXKKKVTPDENGNIKGLSGNSLK 100
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 13 HMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA-QYIPSVEPYAQGFGLL 71
+ GTSM+APH TG VA+++ Q+ + P+ IR+ LE TA + + + G+GL+
Sbjct: 376 YYQGTSMAAPHVTGVVAVLL----QKFPNAKPWQIRKLLENTAFDFNGNGWDHDTGYGLV 431
Query: 72 QVEKALE 78
+++ AL+
Sbjct: 432 KLDAALQ 438
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGTSM++PH G ALI+S + LS S +R L TA Y+ S Y G GL+ V
Sbjct: 216 LNGTSMASPHVAGAAALILS--KHPNLSAS--QVRNRLSSTATYLGSSFYY--GKGLINV 269
Query: 74 EKALE 78
E A +
Sbjct: 270 EAAAQ 274
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGTSM++PH G ALI+S + LS S +R L TA Y+ S Y G GL+ V
Sbjct: 216 LNGTSMASPHVAGAAALILS--KHPNLSAS--QVRNRLSSTATYLGSSFYY--GKGLINV 269
Query: 74 EKALE 78
E A +
Sbjct: 270 EAAAQ 274
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGTSM++PH G ALI+S + LS S +R L TA Y+ S Y G GL+ V
Sbjct: 217 LNGTSMASPHVAGAAALILS--KHPNLSAS--QVRNRLSSTATYLGSSFYY--GKGLINV 270
Query: 74 EKALE 78
E A +
Sbjct: 271 EAAAQ 275
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGTSM++PH G ALI+S + LS S +R L TA Y+ S Y G GL+ V
Sbjct: 217 LNGTSMASPHVAGAAALILS--KHPNLSAS--QVRNRLSSTATYLGSSFYY--GKGLINV 270
Query: 74 EKALE 78
E A +
Sbjct: 271 EAAAQ 275
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGTSM++PH G ALI+S + LS S +R L TA Y+ S Y G GL+ V
Sbjct: 216 LNGTSMASPHVAGAAALILS--KHPNLSAS--QVRNRLSSTATYLGSSFYY--GKGLINV 269
Query: 74 EKALE 78
E A +
Sbjct: 270 EAAAQ 274
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGTSM++PH G ALI+S + LS S +R L TA Y+ S Y G GL+ V
Sbjct: 216 LNGTSMASPHVAGAAALILS--KHPNLSAS--QVRNRLSSTATYLGSSFYY--GKGLINV 269
Query: 74 EKALE 78
E A +
Sbjct: 270 EAAAQ 274
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGT M++PH G ALI+S + LS S +R L TA Y+ S Y G GL+ V
Sbjct: 216 LNGTXMASPHVAGAAALILS--KHPNLSAS--QVRNRLSSTATYLGSSFYY--GKGLINV 269
Query: 74 EKALE 78
E A +
Sbjct: 270 EAAAQ 274
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGTSM+ PH G AL+ +Q+ S+S IR L+ TA + S Y G GL+
Sbjct: 211 LNGTSMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGSTNLY--GSGLVNA 264
Query: 74 EKA 76
E A
Sbjct: 265 EAA 267
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGTSM+ PH G AL+ +Q+ S+S IR L+ TA + S Y G GL+
Sbjct: 211 LNGTSMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGSTNLY--GSGLVNA 264
Query: 74 EKA 76
E A
Sbjct: 265 EAA 267
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGTSM+ PH G AL+ +Q+ S+S IR L+ TA + S Y G GL+
Sbjct: 211 LNGTSMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGSTNLY--GSGLVNA 264
Query: 74 EKA 76
E A
Sbjct: 265 EAA 267
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGTSM+ PH G AL+ +Q+ S+S IR L+ TA + S Y G GL+
Sbjct: 211 LNGTSMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGSTNLY--GSGLVNA 264
Query: 74 EKA 76
E A
Sbjct: 265 EAA 267
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGTSM+ PH G AL+ +Q+ S+S IR L+ TA + S Y G GL+
Sbjct: 211 LNGTSMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGSTNLY--GSGLVNA 264
Query: 74 EKA 76
E A
Sbjct: 265 EAA 267
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 17/202 (8%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEIT-----AQYIPSVEPYAQGF 68
++GTSMS PH TG I + ++ ++SP +I+ AL T A++ P E +A G
Sbjct: 411 ISGTSMSCPHITG----IATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAE-FAYGS 465
Query: 69 GLLQVEKALEWLEKYHAELESKVRFHVTCAGSSSKNKGIHLRVGDQQVPKEVNVS-VEPV 127
G + KA+ Y A V+F G + + GD N V +
Sbjct: 466 GHVNPLKAVRPGLVYDANESDYVKF---LCGQGYNTQAVRRITGDYSACTSGNTGRVWDL 522
Query: 128 FADSDNIVFDPEIKYNFQMSLSLTCSVPWVQFPNHLELMNISRQFNVKVDPSSLT-PGVH 186
S + P +N + +LT P Q + +++ + + V+P+ L+ G+
Sbjct: 523 NYPSFGLSVSPSQTFNQYFNRTLTSVAP--QASTYRAMISAPQGLTISVNPNVLSFNGLG 580
Query: 187 NGTIFAFDSNKPEKGHVFSVEV 208
+ F KG V S +
Sbjct: 581 DRKSFTLTVRGSIKGFVVSASL 602
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
M GTSM+ PH +G AL+ISA + +P ++ L T A G G++
Sbjct: 272 MAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRALGSGIVDA 331
Query: 74 EKALE 78
E A+
Sbjct: 332 EAAVN 336
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
M GTSM+ PH +G AL+ISA + +P ++ L T A G G++
Sbjct: 272 MAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRALGSGIVDA 331
Query: 74 EKALE 78
E A+
Sbjct: 332 EAAVN 336
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
M GTSM+ PH +G AL+ISA + +P ++ L T A G G++
Sbjct: 272 MAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRALGSGIVDA 331
Query: 74 EKALE 78
E A+
Sbjct: 332 EAAVN 336
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
NGTSM+ PH G ALI+S + +++ +R LE TA Y+ S Y G GL+ V+
Sbjct: 218 NGTSMATPHVAGAAALILS----KHPTWTNAQVRDRLESTATYLGSSFYY--GKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 1 MFSSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPS 60
++S+ SN T +NGTSM++PH G ALI+S + S +R L TA +
Sbjct: 204 VYSTYPSNTYTS-LNGTSMASPHVAGAAALILSKYP----TLSASQVRNRLSSTATNLG- 257
Query: 61 VEPYAQGFGLLQVEKALE 78
+ + G GL+ VE A +
Sbjct: 258 -DSFYYGKGLINVEAAAQ 274
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGT M+ PH G AL+ +Q+ S+S IR L+ TA + S Y G GL+
Sbjct: 211 LNGTXMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGSTNLY--GSGLVNA 264
Query: 74 EKA 76
E A
Sbjct: 265 EAA 267
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGT M+ PH G AL+ +Q+ S+S IR L+ TA + S Y G GL+
Sbjct: 211 LNGTXMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGSTNLY--GSGLVNA 264
Query: 74 EKA 76
E A
Sbjct: 265 EAA 267
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGT M+ PH G AL+ +Q+ S+S IR L+ TA + S Y G GL+
Sbjct: 211 LNGTXMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGSTNLY--GSGLVNA 264
Query: 74 EKA 76
E A
Sbjct: 265 EAA 267
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGT M+ PH G AL+ +Q+ S+S IR L+ TA + S Y G GL+
Sbjct: 211 LNGTXMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGSTNLY--GSGLVNA 264
Query: 74 EKA 76
E A
Sbjct: 265 EAA 267
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGTSM+ PH G AL+ +Q+ S+S IR L+ TA + + Y G GL+
Sbjct: 211 LNGTSMATPHVAGVAALV----KQKNPSWSNVQIRNHLKNTATGLGNTNLY--GSGLVNA 264
Query: 74 EKA 76
E A
Sbjct: 265 EAA 267
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 1 MFSSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
+ + +E + GTSM+AP TG AL++S QQG ++R AL TA
Sbjct: 275 ILGAQPCTEEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTA 329
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 1 MFSSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
+ + +E + GTSM+AP TG AL++S QQG ++R AL TA
Sbjct: 275 ILGAQPCTEEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTA 329
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 1 MFSSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
+ + +E + GTSM+AP TG AL++S QQG ++R AL TA
Sbjct: 257 ILGAQPCTEEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTA 311
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 16 GTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEK 75
GTSM+APH +G AL+ISA G + +P + L T G G++
Sbjct: 275 GTSMAAPHVSGVAALVISAANSIGKTLTPSELSDILVRTTSRFNGRLDRGLGSGIVDANA 334
Query: 76 ALE 78
A+
Sbjct: 335 AVN 337
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 16 GTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEK 75
GTSM+APH +G AL+ISA G + +P + L T G G++
Sbjct: 275 GTSMAAPHVSGVAALVISAANSIGKTLTPSELSDILVRTTSRFNGRLDRGLGSGIVDANA 334
Query: 76 ALE 78
A+
Sbjct: 335 AVN 337
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSP----YSIRRALEITAQYIP 59
S+ N++ ++ NGTSM+ PH +G L+ SY P +R AL TA +
Sbjct: 355 SNQGNQDYEYYNGTSMATPHVSGVATLV--------WSYHPECSASQVRAALNATADDLS 406
Query: 60 SVEPYAQ-GFGLLQVEKALEWLEK 82
Q G+G++ A +L++
Sbjct: 407 VAGRDNQTGYGMINAVAAKAYLDE 430
>pdb|3MDQ|A Chain A, Crystal Structure Of An Exopolyphosphatase (Chu_0316) From
Cytophaga Hutchinsonii Atcc 33406 At 1.50 A Resolution
Length = 315
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 74 EKALEWLEKYHAELESKVRFHVTCAGSSSKNKGIHLRVGDQQVPKEVNVSVEPV 127
++AL+ L+K+ L+ HV G+S+ G + +V ++ KEVN+ VE +
Sbjct: 56 DRALDTLKKFRVILDEHAVVHVIATGTSAVRSGSNKQVLIDRIKKEVNIDVEVI 109
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
NGT M+ PH G ALI+S + +++ +R LE TA Y+ + Y G GL+ V+
Sbjct: 218 NGTXMATPHVAGAAALILS----KHPTWTNAQVRDRLESTATYLGNSFYY--GKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
++GTSM++PH G ALI+S + +++ +R +LE TA + + + G GL+ V
Sbjct: 208 LSGTSMASPHVAGAAALILS----KHPNWTNTQVRSSLENTATKLG--DSFYYGKGLINV 261
Query: 74 EKALE 78
E A +
Sbjct: 262 EAAAQ 266
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 6 SSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRAL 51
+S+ TQ +NGTSM+ PH G AL + +Q S +P S+ A+
Sbjct: 210 TSDTATQTLNGTSMATPHVAGVAALYL----EQNPSATPASVASAI 251
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
+GTSM++PH G ALI+S + +++ +R +LE T Y+ + + G GL+ V+
Sbjct: 218 SGTSMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTYLG--DSFYYGKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
NGTSM++PH G ALI+S + +++ +R +LE T + + + G GL+ VE
Sbjct: 218 NGTSMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVE 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
NGT M+ PH G ALI+S + +++ +R LE TA Y+ + Y G GL+ V+
Sbjct: 218 NGTCMATPHVAGAAALILS----KHPTWTNAQVRDRLESTATYLGNSFYY--GKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEP 63
S+ + +M+GTSM++PH G AL+ S QG + IR+A+E TA I
Sbjct: 212 STITGNRYAYMSGTSMASPHVAGLAALLAS----QGR--NNIEIRQAIEQTADKISGTGT 265
Query: 64 YAQGFGLLQVEKALEW 79
Y + +G + A+ +
Sbjct: 266 YFK-YGRINSYNAVTY 280
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 623 SSHGTHVASIAAAYFPDEPEKNGVAPGAQIISL 655
++HGTHVA IAAA + G+AP +I+++
Sbjct: 70 NNHGTHVAGIAAAETNNATGIAGMAPNTRILAV 102
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
++GT+M++PH G ALI+S + +++ +R +LE TA + + + G GL+ V
Sbjct: 208 LSGTAMASPHVAGAAALILS----KHPNWTNTQVRSSLENTATKLG--DSFYYGKGLINV 261
Query: 74 EKALE 78
E A +
Sbjct: 262 EAAAQ 266
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 20/86 (23%)
Query: 13 HMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRAL---EITAQYIPSVEPY----- 64
++GT+M+APH G +ALII+ + + +R+L EI AQ + P
Sbjct: 245 ELSGTAMAAPHVAGALALIINLAED--------AFKRSLSETEIYAQLVRRATPIGFTAQ 296
Query: 65 AQGFGLLQVEKALEWLEKYHAELESK 90
A+G G L L+ +E+ + K
Sbjct: 297 AEGNGFLT----LDLVERITGQFTEK 318
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 20/86 (23%)
Query: 13 HMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRAL---EITAQYIPSVEPY----- 64
++GT+M+APH G +ALII+ + + +R+L EI AQ + P
Sbjct: 245 ELSGTAMAAPHVAGALALIINLAED--------AFKRSLSETEIYAQLVRRATPIGFTAQ 296
Query: 65 AQGFGLLQVEKALEWLEKYHAELESK 90
A+G G L L+ +E+ + K
Sbjct: 297 AEGNGFLT----LDLVERITGQFTEK 318
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 20/86 (23%)
Query: 13 HMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRAL---EITAQYIPSVEPY----- 64
++GT+M+APH G +ALII+ + + +R+L EI AQ + P
Sbjct: 245 ELSGTAMAAPHVAGALALIINLAED--------AFKRSLSETEIYAQLVRRATPIGFTAQ 296
Query: 65 AQGFGLLQVEKALEWLEKYHAELESK 90
A+G G L L+ +E+ + K
Sbjct: 297 AEGNGFLT----LDLVERITGQFTEK 318
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 20/86 (23%)
Query: 13 HMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRAL---EITAQYIPSVEPY----- 64
++GT+M+APH G +ALII+ + + +R+L EI AQ + P
Sbjct: 227 ELSGTAMAAPHVAGALALIINLAED--------AFKRSLSETEIYAQLVRRATPIGFTAQ 278
Query: 65 AQGFGLLQVEKALEWLEKYHAELESK 90
A+G G L L+ +E+ + K
Sbjct: 279 AEGNGFLT----LDLVERITGQFTEK 300
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
NGTSM++PH G ALI+S + +++ +R +LE T + + + G GL+ V+
Sbjct: 218 NGTSMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
Length = 1155
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 219 NPSSKPAV---SWDQVDFKANTTKHHFVLVPKEATIAVLKIRSNSLEAQGKFILHCTQHK 275
NP+++ + D + +T HHF L+ +E T +LE Q F+LH + +
Sbjct: 195 NPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTLETQNFFLLHLSILR 254
Query: 276 PKLYMAVEVHKVT 288
Y+A+E ++T
Sbjct: 255 E--YLALEFEEIT 265
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
++GTSM+ PH G L+ S QG S S +IR A+E TA I Y G +
Sbjct: 221 LSGTSMATPHVAGVAGLLAS----QGRSAS--NIRAAIENTADKISGTGTY-WAKGRVNA 273
Query: 74 EKALEW 79
KA+++
Sbjct: 274 YKAVQY 279
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
++GTSM+ PH G L+ S QG S S +IR A+E TA I Y G +
Sbjct: 221 LSGTSMATPHVAGVAGLLAS----QGRSAS--NIRAAIENTADKISGTGTY-WAKGRVNA 273
Query: 74 EKALEW 79
KA+++
Sbjct: 274 YKAVQY 279
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
+GTSM++PH G ALI+S + +++ +R +LE T + + + G GL+ VE
Sbjct: 209 SGTSMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVE 262
Query: 75 KALE 78
A +
Sbjct: 263 AAAQ 266
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPY---------SIRRALEIT 54
S+ + + + GT+M+ PH +G VALI +A Q+ P ++R L IT
Sbjct: 310 STYPDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHIT 369
Query: 55 AQYI-PSVEPYAQGFGLLQVEKALE 78
A + P+ G+G+++ A++
Sbjct: 370 ADALGPTGWDADYGYGVVRAALAVQ 394
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
NGTSM++PH G ALI+S + +++ +R +L+ T + + + G GL+ V+
Sbjct: 218 NGTSMASPHVAGAAALILS----KHPNWTNTQVRSSLQNTTTKLG--DSFYYGKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
NGTSM++PH G ALI+S + +++ +R +L+ T + + + G GL+ V+
Sbjct: 218 NGTSMASPHVAGAAALILS----KHPNWTNTQVRSSLQNTTTKLG--DSFYYGKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPY---------SIRRALEIT 54
S+ + + + GT+M+ PH +G VALI +A Q+ P ++R L IT
Sbjct: 307 STYPDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHIT 366
Query: 55 AQYI-PSVEPYAQGFGLLQVEKALE 78
A + P+ G+G+++ A++
Sbjct: 367 ADDLGPTGWDADYGYGVVRAALAVQ 391
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPY---------SIRRALEIT 54
S+ + + + GT+M+ PH +G VALI +A Q+ P ++R L IT
Sbjct: 310 STYPDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHIT 369
Query: 55 AQYI-PSVEPYAQGFGLLQVEKALE 78
A + P+ G+G+++ A++
Sbjct: 370 ADDLGPTGWDADYGYGVVRAALAVQ 394
>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Burkholderia Pseudomallei Using Dried
Seaweed As Nucleant Or Protease
Length = 394
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 566 YWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPADQFNFSINV 609
Y+ C D+ ET D A H LGE+N +L A F+F +
Sbjct: 74 YYAKCEDSGETPDFLAGHSLGEFN------ALLAAGCFDFETGL 111
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
NGT M++PH G ALI+S + +++ +R +LE T + + + G GL+ V+
Sbjct: 218 NGTXMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPY---------SIRRALEIT 54
S+ + + + GT+M+ PH +G VALI +A Q+ P ++R L IT
Sbjct: 310 STYPDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHIT 369
Query: 55 AQYI-PSVEPYAQGFGLLQVEKALE 78
A + P+ G+G+++ A++
Sbjct: 370 ADDLGPTGWDADYGYGVVRAALAVQ 394
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPY---------SIRRALEIT 54
S+ + + + GT+M+ PH +G VALI +A Q+ P ++R L IT
Sbjct: 310 STYPDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHIT 369
Query: 55 AQYI-PSVEPYAQGFGLLQVEKALE 78
A + P+ G+G+++ A++
Sbjct: 370 ADDLGPTGWDADYGYGVVRAALAVQ 394
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
NGT M++PH G ALI+S + +++ +R +LE T + + + G GL+ V+
Sbjct: 218 NGTXMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
+GT+M++PH G ALI+S + +++ +R +LE T + + + G GL+ VE
Sbjct: 209 SGTAMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVE 262
Query: 75 KALE 78
A +
Sbjct: 263 AAAQ 266
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 623 SSHGTHVASIAAAYFPDEPEK-NGVAPGAQIISLCI 657
+ HGTHVASIAA K G+APGA+++ + +
Sbjct: 178 NGHGTHVASIAAGTGAASNGKYKGMAPGAKLVGIKV 213
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 16 GTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIP--SVEPYAQGFGLLQV 73
GT+M+ PH G AL++ A S++P ++ AL TA + + A G G +
Sbjct: 357 GTAMATPHVAGIAALLLQAHP----SWTPDKVKTALIETADIVKPDEIADIAYGAGRVNA 412
Query: 74 EKA 76
KA
Sbjct: 413 YKA 415
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPY---------SIRRALEIT 54
S+ + + + GT+M+ PH +G VALI +A Q+ P ++R L IT
Sbjct: 230 STYPDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHIT 289
Query: 55 AQYI-PSVEPYAQGFGLLQVEKALE 78
A + P+ G+G+++ A++
Sbjct: 290 ADDLGPTGWDADYGYGVVRAALAVQ 314
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPY---------SIRRALEIT 54
S+ + + + GT+M+ PH +G VALI +A Q+ P ++R L IT
Sbjct: 241 STYPDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHIT 300
Query: 55 AQYI-PSVEPYAQGFGLLQVEKALE 78
A + P+ G+G+++ A++
Sbjct: 301 ADDLGPTGWDADYGYGVVRAALAVQ 325
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPY---------SIRRALEIT 54
S+ + + + GT+M+ PH +G VALI +A Q+ P ++R L IT
Sbjct: 241 STYPDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHIT 300
Query: 55 AQYI-PSVEPYAQGFGLLQVEKALE 78
A + P+ G+G+++ A++
Sbjct: 301 ADDLGPTGWDADYGYGVVRAALAVQ 325
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPY---------SIRRALEIT 54
S+ + + + GT+M+ PH +G VALI +A Q+ P ++R L IT
Sbjct: 232 STYPDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHIT 291
Query: 55 AQYI-PSVEPYAQGFGLLQVEKALE 78
A + P+ G+G+++ A++
Sbjct: 292 ADDLGPTGWDADYGYGVVRAALAVQ 316
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
+GTSM++PH G ALI+S + +++ +R +LE T + + + G GL+ V+
Sbjct: 218 SGTSMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
+GTSM++PH G ALI+S + +++ +R +LE T + + + G GL+ V+
Sbjct: 218 SGTSMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 42/100 (42%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIR--------RALEITAQYIPSVEPYA 65
MNGTS + P +G +AL++SA Y S+R A + A++ P + Y
Sbjct: 332 MNGTSSATPSTSGAMALLMSA-------YPDLSVRDLRDLLARSATRVDAKHQPVMVSYT 384
Query: 66 Q---------------------------GFGLLQVEKALE 78
GFGL+ V KALE
Sbjct: 385 SSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALE 424
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
+GT M++PH G ALI+S + +++ +R +LE T + + + G GL+ VE
Sbjct: 209 SGTXMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVE 262
Query: 75 KALE 78
A +
Sbjct: 263 AAAQ 266
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
+GTSM++PH G ALI+S + +++ +R +LE T + + + G GL+ V+
Sbjct: 218 SGTSMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
+GTSM++PH G ALI+S + +++ +R +LE T + + + G GL+ V+
Sbjct: 218 SGTSMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
+GT M++PH G ALI+S + +++ +R +LE T + + + G GL+ VE
Sbjct: 206 SGTXMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVE 259
Query: 75 KALE 78
A +
Sbjct: 260 AAAQ 263
>pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin Crma
Length = 300
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 585 LGEYNVTRDFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYF 637
+G+ T DFT D N S++++ EG + L+ S T + +I+A YF
Sbjct: 81 IGDNFQTVDFTDSRTVDAINKSVDIFTEGKINPLLDEPLSPDTSLLAISAVYF 133
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
+GTSM++PH G ALI+S + +++ +R +LE T + + Y G GL+ V+
Sbjct: 209 SGTSMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLGNSFYY--GKGLINVQ 262
Query: 75 KALE 78
A +
Sbjct: 263 AAAQ 266
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 8 NKETQHMNGTSMSAPHATGCVALIIS---ALQQQGLSYSPYSIRRALEITAQYIPSV-EP 63
N ++GTSM+ PH +G A I + +L L + ++++I Y ++ +
Sbjct: 240 NGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDD 299
Query: 64 YAQGFGLLQVE 74
YA GFG +V+
Sbjct: 300 YASGFGFARVQ 310
>pdb|1M93|B Chain B, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 245
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 585 LGEYNVTRDFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYF 637
+G+ T DFT D N S++++ EG + L+ S T + +I+A YF
Sbjct: 26 IGDNFQTVDFTDSRTVDAINKSVDIFTEGKINPLLDEPLSPDTSLLAISAVYF 78
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
NGTSM++PH G ALI+S + +++ +R +LE T + + + G GL+ V
Sbjct: 218 NGTSMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINV 270
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
NGTS ++PH G ALI+S + +++ +R +LE T + + + G GL+ V+
Sbjct: 218 NGTSXASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|3R64|A Chain A, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|B Chain B, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|C Chain C, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|D Chain D, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
Length = 508
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 26/126 (20%)
Query: 74 EKALEWLEKYHAELESKVRFHVTCAGSSSKNKG-----IHLRVGDQQVPKEVNVSVEPVF 128
E+ +EWL K SK +T AG+ +K +H R+ P + N V+
Sbjct: 90 EEIVEWLIKESGSTRSKANLEITLAGNITKESASFPGRVHGRISPSNTPGKEN----RVY 145
Query: 129 ADSDNI--VFDPEIKYNFQMSLSLTCSVPWVQFPNHLELMNISRQFNVKVDPSSLTPGVH 186
+ + V P +NF ++LS+ P + N V + P+S TP V
Sbjct: 146 RVAKGVVGVISP---WNFPLNLSIRSVAPALAVGNA-----------VVIKPASDTP-VT 190
Query: 187 NGTIFA 192
G I A
Sbjct: 191 GGVIPA 196
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
+GT+M++PH G ALI+S + +++ +R +LE T + + + G GL+ V+
Sbjct: 209 SGTAMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVQ 262
Query: 75 KALE 78
A +
Sbjct: 263 AAAQ 266
>pdb|1FX3|A Chain A, Crystal Structure Of H. Influenzae Secb
pdb|1FX3|B Chain B, Crystal Structure Of H. Influenzae Secb
pdb|1FX3|C Chain C, Crystal Structure Of H. Influenzae Secb
pdb|1FX3|D Chain D, Crystal Structure Of H. Influenzae Secb
pdb|1OZB|A Chain A, Crystal Structure Of Secb Complexed With Seca C-Terminus
pdb|1OZB|B Chain B, Crystal Structure Of Secb Complexed With Seca C-Terminus
pdb|1OZB|C Chain C, Crystal Structure Of Secb Complexed With Seca C-Terminus
pdb|1OZB|D Chain D, Crystal Structure Of Secb Complexed With Seca C-Terminus
pdb|1OZB|E Chain E, Crystal Structure Of Secb Complexed With Seca C-Terminus
pdb|1OZB|F Chain F, Crystal Structure Of Secb Complexed With Seca C-Terminus
pdb|1OZB|G Chain G, Crystal Structure Of Secb Complexed With Seca C-Terminus
pdb|1OZB|H Chain H, Crystal Structure Of Secb Complexed With Seca C-Terminus
Length = 169
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 110 RVGDQQVPKEVNVSVEPVFADSDNIVFDPEIKY----------NFQMSLSLTCSVPWVQF 159
+VGD +N+SVE DS ++ F E+K + QM+ LT P + F
Sbjct: 57 QVGDDLYEVVLNISVETTLEDSGDVAFICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLF 116
Query: 160 PNHLELMN 167
P EL++
Sbjct: 117 PYARELVS 124
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
+GT M++PH G ALI+S + +++ +R +LE T + + + G GL+ V+
Sbjct: 218 SGTXMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 6 SSNKETQHMNGTSMSAPHATGCVALII 32
+SN T ++GTSM++PH G AL +
Sbjct: 212 TSNSATNTISGTSMASPHVAGVAALYL 238
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
+GT M++PH G ALI+S + +++ +R +LE T + + + G GL+ V+
Sbjct: 218 SGTXMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVE 74
+GT M++PH G ALI+S + +++ +R +LE T + + + G GL+ V+
Sbjct: 218 SGTXMASPHVAGAAALILS----KHPNWTNTQVRSSLENTTTKLG--DSFYYGKGLINVQ 271
Query: 75 KALE 78
A +
Sbjct: 272 AAAQ 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,096,218
Number of Sequences: 62578
Number of extensions: 817105
Number of successful extensions: 2315
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 2159
Number of HSP's gapped (non-prelim): 201
length of query: 698
length of database: 14,973,337
effective HSP length: 106
effective length of query: 592
effective length of database: 8,340,069
effective search space: 4937320848
effective search space used: 4937320848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)