Query psy14141
Match_columns 698
No_of_seqs 439 out of 2437
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 20:34:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1114|consensus 100.0 2.9E-95 6E-100 817.7 29.9 319 361-682 51-380 (1304)
2 cd04857 Peptidases_S8_Tripepti 100.0 9E-71 1.9E-75 602.2 19.2 245 369-683 1-256 (412)
3 KOG1114|consensus 100.0 4.6E-69 1E-73 606.3 24.3 331 6-348 485-823 (1304)
4 cd07478 Peptidases_S8_CspA-lik 99.6 5.5E-17 1.2E-21 181.9 3.9 63 620-682 75-161 (455)
5 cd07483 Peptidases_S8_Subtilis 99.6 1.3E-15 2.8E-20 161.3 7.1 62 621-682 83-152 (291)
6 PTZ00262 subtilisin-like prote 99.6 1.1E-15 2.5E-20 174.6 6.1 64 621-684 376-448 (639)
7 cd04852 Peptidases_S8_3 Peptid 99.5 1.2E-14 2.7E-19 154.4 9.7 63 621-683 106-185 (307)
8 cd07475 Peptidases_S8_C5a_Pept 99.5 4.5E-14 9.8E-19 152.0 6.7 67 619-685 78-158 (346)
9 cd07497 Peptidases_S8_14 Pepti 99.5 3E-14 6.4E-19 152.7 5.0 63 621-683 54-143 (311)
10 cd07479 Peptidases_S8_SKI-1_li 99.4 4.9E-14 1.1E-18 146.7 5.1 58 622-682 44-110 (255)
11 cd04842 Peptidases_S8_Kp43_pro 99.4 2.5E-13 5.5E-18 142.3 9.9 64 621-684 52-128 (293)
12 cd07480 Peptidases_S8_12 Pepti 99.4 7.2E-14 1.6E-18 148.0 5.8 61 622-683 45-114 (297)
13 cd07481 Peptidases_S8_Bacillop 99.4 3.1E-13 6.7E-18 140.6 7.0 63 621-684 50-132 (264)
14 cd07496 Peptidases_S8_13 Pepti 99.4 4.4E-13 9.5E-18 141.0 7.0 65 620-684 68-150 (285)
15 cd07489 Peptidases_S8_5 Peptid 99.4 4.7E-13 1E-17 142.5 7.1 62 621-683 66-136 (312)
16 cd05562 Peptidases_S53_like Pe 99.3 1E-12 2.3E-17 138.5 7.2 72 3-78 202-274 (275)
17 cd07485 Peptidases_S8_Fervidol 99.3 1.3E-12 2.8E-17 136.6 6.1 63 621-683 59-136 (273)
18 cd07490 Peptidases_S8_6 Peptid 99.3 1.4E-12 3E-17 134.2 6.0 62 622-684 42-111 (254)
19 cd07484 Peptidases_S8_Thermita 99.3 2.8E-12 6.1E-17 132.7 7.1 62 622-683 67-137 (260)
20 cd04059 Peptidases_S8_Protein_ 99.3 3.8E-12 8.3E-17 134.0 8.2 64 621-684 82-151 (297)
21 cd07474 Peptidases_S8_subtilis 99.3 4.3E-12 9.4E-17 133.3 7.6 63 621-683 60-131 (295)
22 cd07473 Peptidases_S8_Subtilis 99.3 2.9E-12 6.2E-17 132.2 5.6 64 621-684 61-133 (259)
23 cd07487 Peptidases_S8_1 Peptid 99.3 3.1E-12 6.8E-17 131.8 5.9 63 622-684 43-119 (264)
24 cd07476 Peptidases_S8_thiazoli 99.3 4.6E-12 1E-16 133.0 5.9 60 622-683 49-118 (267)
25 cd07491 Peptidases_S8_7 Peptid 99.3 2.6E-12 5.5E-17 133.5 3.6 54 621-684 47-115 (247)
26 cd04848 Peptidases_S8_Autotran 99.2 6.8E-12 1.5E-16 128.5 5.4 63 621-684 44-116 (267)
27 cd07494 Peptidases_S8_10 Pepti 99.2 1.7E-11 3.8E-16 130.6 8.3 55 621-685 59-118 (298)
28 cd04077 Peptidases_S8_PCSK9_Pr 99.2 9.7E-12 2.1E-16 128.4 5.9 57 621-683 61-131 (255)
29 cd07477 Peptidases_S8_Subtilis 99.2 2E-11 4.4E-16 123.3 5.9 63 621-684 38-109 (229)
30 cd05562 Peptidases_S53_like Pe 99.2 1.8E-11 3.9E-16 129.2 5.7 52 621-682 46-101 (275)
31 cd04843 Peptidases_S8_11 Pepti 99.2 4.8E-11 1E-15 126.1 8.7 63 621-684 49-118 (277)
32 PTZ00262 subtilisin-like prote 99.2 5.5E-11 1.2E-15 136.6 8.3 78 2-83 541-618 (639)
33 cd07475 Peptidases_S8_C5a_Pept 99.1 9.6E-11 2.1E-15 126.3 6.7 76 3-78 260-346 (346)
34 cd07479 Peptidases_S8_SKI-1_li 99.0 2.6E-10 5.7E-15 118.9 5.5 57 4-60 199-255 (255)
35 cd07474 Peptidases_S8_subtilis 99.0 5.3E-10 1.1E-14 117.6 5.1 64 9-76 227-295 (295)
36 cd07489 Peptidases_S8_5 Peptid 99.0 5.8E-10 1.3E-14 118.9 5.3 70 10-82 223-302 (312)
37 cd07493 Peptidases_S8_9 Peptid 98.9 1.4E-09 3.1E-14 113.0 7.9 64 620-685 44-118 (261)
38 cd07478 Peptidases_S8_CspA-lik 98.9 9.9E-10 2.1E-14 123.7 6.2 67 3-69 385-455 (455)
39 cd05561 Peptidases_S8_4 Peptid 98.9 1.2E-09 2.6E-14 112.7 6.1 59 621-682 34-104 (239)
40 cd07498 Peptidases_S8_15 Pepti 98.9 1.1E-09 2.5E-14 111.9 5.3 64 621-684 38-110 (242)
41 cd07482 Peptidases_S8_Lantibio 98.9 1.9E-09 4.2E-14 113.0 6.4 62 620-685 50-120 (294)
42 cd05561 Peptidases_S8_4 Peptid 98.9 2.5E-09 5.4E-14 110.4 6.1 62 3-69 177-239 (239)
43 cd07476 Peptidases_S8_thiazoli 98.9 2.8E-09 6E-14 112.1 6.0 58 3-60 197-254 (267)
44 cd04847 Peptidases_S8_Subtilis 98.8 2.5E-09 5.3E-14 113.0 5.4 65 620-684 35-115 (291)
45 PF00082 Peptidase_S8: Subtila 98.8 1.8E-09 3.8E-14 112.1 3.6 65 10-78 214-282 (282)
46 cd07494 Peptidases_S8_10 Pepti 98.8 4.2E-09 9.1E-14 112.5 6.4 61 4-69 235-295 (298)
47 KOG4266|consensus 98.8 2.1E-08 4.6E-13 112.4 10.7 82 5-86 392-473 (1033)
48 cd07480 Peptidases_S8_12 Pepti 98.7 1.4E-08 2.9E-13 107.9 4.7 72 3-74 223-296 (297)
49 cd07492 Peptidases_S8_8 Peptid 98.6 4.9E-08 1.1E-12 98.9 5.4 54 621-684 42-104 (222)
50 PF00082 Peptidase_S8: Subtila 98.5 3.4E-08 7.3E-13 102.6 1.9 62 620-681 43-114 (282)
51 cd07488 Peptidases_S8_2 Peptid 98.3 1.3E-07 2.9E-12 98.6 0.1 59 620-685 34-99 (247)
52 KOG1153|consensus 98.3 1.5E-06 3.3E-11 95.5 7.2 56 620-681 254-327 (501)
53 cd00306 Peptidases_S8_S53 Pept 98.2 1.1E-06 2.4E-11 87.5 5.4 64 620-684 41-114 (241)
54 KOG4266|consensus 97.9 2.4E-05 5.1E-10 88.6 7.4 55 623-681 238-301 (1033)
55 COG1404 AprE Subtilisin-like s 97.4 0.00021 4.6E-09 78.5 5.8 62 621-682 181-255 (508)
56 KOG3526|consensus 97.3 0.00042 9.1E-09 75.1 6.1 60 623-682 208-274 (629)
57 cd04842 Peptidases_S8_Kp43_pro 97.1 0.00032 6.9E-09 73.8 3.4 33 6-38 239-271 (293)
58 KOG1153|consensus 96.4 0.0017 3.6E-08 72.1 2.3 53 2-54 400-459 (501)
59 COG1404 AprE Subtilisin-like s 95.8 0.0094 2E-07 65.6 4.6 69 5-77 347-419 (508)
60 cd07492 Peptidases_S8_8 Peptid 92.5 0.087 1.9E-06 53.4 2.8 20 392-411 1-20 (222)
61 cd07493 Peptidases_S8_9 Peptid 91.7 0.15 3.2E-06 53.2 3.4 37 392-428 1-38 (261)
62 cd04056 Peptidases_S53 Peptida 91.4 0.16 3.5E-06 56.0 3.6 29 9-37 272-300 (361)
63 cd04857 Peptidases_S8_Tripepti 90.7 0.07 1.5E-06 60.1 -0.1 55 644-698 32-86 (412)
64 cd07482 Peptidases_S8_Lantibio 88.8 0.22 4.7E-06 52.4 1.7 19 392-410 1-19 (294)
65 cd04056 Peptidases_S53 Peptida 87.6 0.58 1.3E-05 51.7 4.3 44 642-685 82-133 (361)
66 cd04847 Peptidases_S8_Subtilis 87.5 0.29 6.3E-06 51.9 1.7 18 393-410 1-18 (291)
67 cd07498 Peptidases_S8_15 Pepti 87.0 0.34 7.3E-06 49.6 1.9 18 393-410 1-18 (242)
68 PF06280 DUF1034: Fn3-like dom 79.2 4 8.8E-05 37.3 5.4 52 149-208 56-111 (112)
69 KOG3526|consensus 73.1 1.1 2.5E-05 49.3 0.0 79 11-96 378-472 (629)
70 cd00306 Peptidases_S8_S53 Pept 71.9 2.4 5.2E-05 41.9 2.1 17 393-409 1-17 (241)
71 PF07495 Y_Y_Y: Y_Y_Y domain; 57.3 27 0.00058 28.3 5.3 54 147-210 11-65 (66)
72 PF08622 Svf1: Svf1-like; Int 27.1 4.2E+02 0.009 29.5 9.8 55 236-293 127-184 (325)
73 PF11614 FixG_C: IG-like fold 24.8 3E+02 0.0065 25.2 7.2 45 166-213 72-118 (118)
74 PF09191 CD4-extracel: CD4, ex 23.4 46 0.001 30.8 1.5 70 321-401 13-98 (108)
75 COG5441 Uncharacterized conser 22.5 2.5E+02 0.0054 31.0 6.9 51 377-432 81-132 (401)
76 PF00151 Lipase: Lipase; Inte 21.6 44 0.00095 36.8 1.2 28 400-427 181-214 (331)
77 COG4934 Predicted protease [Po 21.4 52 0.0011 41.9 1.9 27 10-36 472-498 (1174)
No 1
>KOG1114|consensus
Probab=100.00 E-value=2.9e-95 Score=817.71 Aligned_cols=319 Identities=53% Similarity=0.850 Sum_probs=308.2
Q ss_pred CcccCCccccccccccchhhhhhhCCCCCCcceEEEEeecCcCCCCCCccccCCCCceEEEEEccCCCCccCCcceEEec
Q psy14141 361 PIIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVD 440 (698)
Q Consensus 361 ~~~~fp~~~l~pk~etg~~~fl~~~p~~dGrgv~IAIlDTGVDp~apglq~t~dG~~Kiid~~D~tg~GdVd~s~~~~~~ 440 (698)
+.++||+++||||+||||..||++|||||||||+||||||||||+|||||+|+||+|||+|+|||||+|||||++.|++.
T Consensus 51 ~~e~~p~~~L~pK~Et~a~~FL~kyPeYDGRgV~IaIlDtGvDP~apGl~vttdGkpKv~dviDctGaGDVDts~~v~~~ 130 (1304)
T KOG1114|consen 51 IVESFPVDALVPKKETGAYEFLKKYPEYDGRGVTIAILDTGVDPSAPGLQVTTDGKPKVKDVIDCTGAGDVDTSTEVTAA 130 (1304)
T ss_pred ccCccccccccccchhhHHHHHHhCcCCCCCceEEEEeecCCCCCCCCceEecCCCcceeEEEecCCCCccccceEEeec
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCeeeeecCceeecCCCccCCCCceEEeeeecccccchhHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhhcCCcc
Q psy14141 441 DTNHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAK 520 (698)
Q Consensus 441 ~~g~i~g~sGr~l~i~~~w~~p~g~~~vg~k~~~~l~p~~l~~r~~~e~k~~~wd~~~~~~~a~a~~~l~~~~~~~~~~~ 520 (698)
+||+|+|+|||+|+||++|+||+|+||||+|.+|||||+.|++||+++||+|.||+.|+.++|+|++++.+|+.++++ +
T Consensus 131 edg~I~G~SGrtLkl~~~wknPtg~~~VG~K~~yel~pk~lr~rv~a~~k~k~wd~~h~~a~a~A~~~~~efe~~~~g-~ 209 (1304)
T KOG1114|consen 131 EDGTITGLSGRTLKLSASWKNPTGKWRVGLKLAYELFPKDLRSRVQAKRKEKDWDKSHRKALAEATRKLAEFEDKNPG-A 209 (1304)
T ss_pred cCceEecccCceEEcccccCCCCcceEeccchHHHhchHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHhhCCC-c
Confidence 779999999999999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCceeeeEEecCCceEEEEEeCCCCCCCCcccccccccccCcccccCcc
Q psy14141 521 NLSRENKLLKEELESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPA 600 (698)
Q Consensus 521 ~~~~~~~~~~e~l~~~~~~l~~~~k~y~~~d~gp~~d~vv~~dG~~w~a~iDt~~~gdl~~~~~l~~y~~~~~~~~~~~~ 600 (698)
..++++|+.||||+++||+||+++|+|+ |+||+||||||||||+||+||||+++|||....++++|+++++|+.|++.
T Consensus 210 ~~k~~~k~~rEdl~~kve~Lks~a~ky~--D~gpvyD~vvwhdgE~Wrv~iDt~~~Gdl~~~~~L~~~~~t~e~~~f~~~ 287 (1304)
T KOG1114|consen 210 SLKKDNKQTREDLQSKVEFLKSLAKKYD--DPGPVYDVVVWHDGEVWRVCIDTDETGDLYLHKVLGEFNETGEYATFGSL 287 (1304)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhcC--CCCcceEEEEeecCCeEEEEecccccCccccccccccccccccccccccc
Confidence 5558899999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeccCCceEEEeccCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh--------hhHHHh---hc
Q psy14141 601 DQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP--------KVIERY---DC 669 (698)
Q Consensus 601 d~ln~a~~~y~~g~~l~iv~d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~--------~~~~~i---~~ 669 (698)
|+++|++++|++||+++||++.+.|||||||||+||+++++..+||||||||++++|||.| .+.+|| ..
T Consensus 288 d~l~ysV~vyd~gnvlsIV~~Sg~HGTHVAgIa~anhpe~p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e 367 (1304)
T KOG1114|consen 288 DLLSYSVNVYDDGNVLSIVTVSGPHGTHVAGIAAANHPETPELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIE 367 (1304)
T ss_pred cccceeEEEccCCceEEEEecCCCCcceehhhhccCCCCCccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 245555 56
Q ss_pred cCCceeeeccccc
Q psy14141 670 GGAGDVDTSTVVK 682 (698)
Q Consensus 670 ~Ga~vin~S~g~~ 682 (698)
+..|+||||+|=+
T Consensus 368 ~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 368 HNVDIINMSYGED 380 (1304)
T ss_pred hcCCEEEeccCcc
Confidence 8999999999944
No 2
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=9e-71 Score=602.15 Aligned_cols=245 Identities=57% Similarity=0.975 Sum_probs=230.2
Q ss_pred ccccccccchhhhhhhCCCCCCcceEEEEeecCcCCCCCCccccCCCCceEEEEEccCCCCccCCcceEEecCCCeeeee
Q psy14141 369 GLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGL 448 (698)
Q Consensus 369 ~l~pk~etg~~~fl~~~p~~dGrgv~IAIlDTGVDp~apglq~t~dG~~Kiid~~D~tg~GdVd~s~~~~~~~~g~i~g~ 448 (698)
+||||+||||.+||++||+||||||+||||||||||+|||||+|+||+|||||||||||+|||||+++|+.+++|+|+++
T Consensus 1 ~~~pk~~~~~~~f~~~~p~~dgr~v~iai~dtgvd~~~~~lq~t~~g~~ki~d~~d~t~~gdv~~~~~~~~~~~~~~~~~ 80 (412)
T cd04857 1 GLLPKKETGALRFLQKYPEYDGRGVLIAILDTGVDPGAPGLQVTTDGKPKIIDIIDCTGSGDVDTSTVVTPDDGGIIGGL 80 (412)
T ss_pred CCCCcchhhHHHHHHHCcCCCCCCcEEEEecCCCCCCCCcccccCCCCCeEEEEEeCCCCCCcccceEEecCCCCeEecc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred cCceeecCCCccCCCCceEEeeeecccccchhHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhhcCCcccchHHHHH
Q psy14141 449 SGRKLKIPTSWKNPTGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKL 528 (698)
Q Consensus 449 sGr~l~i~~~w~~p~g~~~vg~k~~~~l~p~~l~~r~~~e~k~~~wd~~~~~~~a~a~~~l~~~~~~~~~~~~~~~~~~~ 528 (698)
+||+|+||++|+||+|+||||+|+.|| +
T Consensus 81 ~g~~~~~~~~~~~~~g~~~~g~~~~~~---------------~------------------------------------- 108 (412)
T cd04857 81 TGRKLKIPASWKNPSGKYHVGIKNAYD---------------E------------------------------------- 108 (412)
T ss_pred CCceecCcccccCCCCeEEEeeEEecc---------------h-------------------------------------
Confidence 999999999999999999999988766 0
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCCceeeeEEecCCceEEEEEeCCCCCCCCcccccccccccCcccccCccccccccee
Q psy14141 529 LKEELESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPADQFNFSIN 608 (698)
Q Consensus 529 ~~e~l~~~~~~l~~~~k~y~~~d~gp~~d~vv~~dG~~w~a~iDt~~~gdl~~~~~l~~y~~~~~~~~~~~~d~ln~a~~ 608 (698)
|+|+ |+||+|||+|||||+.|+++||++++++|+++++|++|+++++|++|+.+++++|+++
T Consensus 109 ----------------~~~~--~~~~~~d~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 170 (412)
T cd04857 109 ----------------KKYE--DPGPVYDCVVFHDGEHWRAVIDTSETGDLDSCTVLTNYREEREYATFGEQDLLNYSVN 170 (412)
T ss_pred ----------------hccc--CCCCcceEEEEecCCceEEEEecCCCCccccCcccccccccceeEeeccccceeeEEE
Confidence 1266 8999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCceEEEeccCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh--------hhH---HHhhccCCceeee
Q psy14141 609 VYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP--------KVI---ERYDCGGAGDVDT 677 (698)
Q Consensus 609 ~y~~g~~l~iv~d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~--------~~~---~~i~~~Ga~vin~ 677 (698)
+|+++|+++|++|+++|||||||||||+.+++.++.||||+|+|+++|+++.+ .++ +.++++|++||||
T Consensus 171 ~~~~g~~~~~~~d~~gHGThVAGIIAg~~~~~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~ 250 (412)
T cd04857 171 IYDDGNLLSIVTDSGAHGTHVAGIAAAHFPEEPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINM 250 (412)
T ss_pred EccCCCceecCCCCCCCHHHHHHHHhCCCCCCCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEe
Confidence 99999999999999999999999999998888899999999999999997653 233 3447899999999
Q ss_pred cccccC
Q psy14141 678 STVVKV 683 (698)
Q Consensus 678 S~g~~~ 683 (698)
|||...
T Consensus 251 SlG~~~ 256 (412)
T cd04857 251 SYGEAT 256 (412)
T ss_pred cCCcCC
Confidence 999764
No 3
>KOG1114|consensus
Probab=100.00 E-value=4.6e-69 Score=606.28 Aligned_cols=331 Identities=35% Similarity=0.595 Sum_probs=299.1
Q ss_pred CCCCCceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccCCCCCCCccccccccHHHHHHHHHHhcc
Q psy14141 6 SSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEKALEWLEKYHA 85 (698)
Q Consensus 6 ~~~~~y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~ik~aL~~TA~~~~~~~~~~~G~Gli~v~~A~~~l~~~~~ 85 (698)
|..++.|+|||||||||++||++|||||++||++++|||+.||+||++||.++++.+.|+||.|+|||++|+++|.+...
T Consensus 485 ~tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~id~faqG~GmlqVdkAyEyL~q~~~ 564 (1304)
T KOG1114|consen 485 YTLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDIDSFAQGQGMLQVDKAYEYLAQSDF 564 (1304)
T ss_pred hhhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCccchhccCcceeehhHHHHHHHHhhh
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cccceeEE-EEEecCCCCCcceeeeecCCC-CCCeeEEEEEeeeecCCCCcccccccccccceEEEEeecCCeEEecccc
Q psy14141 86 ELESKVRF-HVTCAGSSSKNKGIHLRVGDQ-QVPKEVNVSVEPVFADSDNIVFDPEIKYNFQMSLSLTCSVPWVQFPNHL 163 (698)
Q Consensus 86 ~~~~~~~~-~Vt~~~~~~~~rGIylR~~~~-~~p~~~tVtV~p~f~~~~~~~~~~~~k~~f~~~l~L~~t~~wVtvP~~l 163 (698)
..+..+.| .++... +..||||||++.. ..|++++|.|+|.|.+... .. ..+++|++++.|.++++||+||+++
T Consensus 565 ~f~~~l~f~~v~VgN--~~srGIyLRep~~~~~p~e~~i~VePiF~~~~e--~~-keki~Fe~~L~L~st~pwVq~p~~l 639 (1304)
T KOG1114|consen 565 SFPNALGFINVNVGN--SCSRGIYLREPTQVCSPSEHTIGVEPIFENGEE--NE-KEKISFEVQLSLASTQPWVQCPEYL 639 (1304)
T ss_pred cCCccceeEEEeecc--ccccceEecCCcccCCccccceeccccccCccc--cc-cccccceeeEeeecCCcceeCchhh
Confidence 77777888 777643 3479999999865 5679999999999998543 12 4689999999999999999999999
Q ss_pred cccCceEEEEEEEeCCCCCCcceEEEEEEEcCCCCCCCceEEEEEEEEeeeecCCCCCCCCceeeeeeeeeCCceEEEEE
Q psy14141 164 ELMNISRQFNVKVDPSSLTPGVHNGTIFAFDSNKPEKGHVFSVEVTVVKPIVLGSNPSSKPAVSWDQVDFKANTTKHHFV 243 (698)
Q Consensus 164 ~l~~~~rtf~V~VDpt~L~~G~h~g~I~a~D~~~p~~G~~frIPvTVv~P~~l~~~~~~~p~~s~~~~~~~pg~i~r~Fv 243 (698)
+|++++|+|+|+|||++|+||+||++|++||+.+|++||+|||||||++|..+.+ +.+.+.+..+.|+||+|+|+||
T Consensus 640 ~l~~~~R~i~VrVDpt~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi~P~~v~~---~~~t~~f~~~~F~pg~i~R~Fi 716 (1304)
T KOG1114|consen 640 MLANQGRGINVRVDPTGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVIKPKVVAN---DQYTLRFVSVEFEPGLIERRFI 716 (1304)
T ss_pred eeccCCceeEEEECCcCCCCCcceEEEEEeecCCcccCceEEeeeEEEccccccC---CCCccccccccccCCceeeeeE
Confidence 9999999999999999999999999999999999999999999999999998853 4577888889999999999999
Q ss_pred ecCCCCeEEEEEEeecCCCccceEEEEecccCCc-cccceEEEEEE-ecCCceeecCCCc--eeEEEEehhhhhhhcccc
Q psy14141 244 LVPKEATIAVLKIRSNSLEAQGKFILHCTQHKPK-LYMAVEVHKVT-LTSPTMYIDSESR--SLSLILIPVIFWLINSLR 319 (698)
Q Consensus 244 ~VP~GAt~~~v~l~~~~~~~~~rf~lh~~Ql~p~-~~~~~e~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~w~~~~~~ 319 (698)
.||+||||+|++|++++++...|||||++|++|+ +||..|++|+. +.++.+..-.+++ .-+||+-+++||++
T Consensus 717 evP~gATwAeitmrst~~e~~~rf~iht~q~~p~~~~r~~et~ki~~~~~~~~~s~~f~V~~gktlElcia~~WSs---- 792 (1304)
T KOG1114|consen 717 EVPEGATWAEITMRSTSLESTNRFWIHTNQLIPQRKLREAETEKIMSVPSNNETSKAFPVDSGKTLELCIAQWWSS---- 792 (1304)
T ss_pred ecCCCcceEEEEEEecCccccceEEEEeeeecchhhcccccceeccccCCCCceEEEEEecCcccHHHHHHHHHhh----
Confidence 9999999999999999999999999999999997 56899999995 7888877766665 55689999999987
Q ss_pred ccceeeee-EEEecc-ccccceeeeccCCCC
Q psy14141 320 LNSSHLSF-LTSHNT-LTNQIQLSSSDSTNP 348 (698)
Q Consensus 320 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~ 348 (698)
++.++|+| +.||++ -.|..++....|..|
T Consensus 793 l~~~~ld~ti~FhGV~~~~~~~l~l~as~g~ 823 (1304)
T KOG1114|consen 793 LGPVVLDYTINFHGVKVVNPKELNLHASEGP 823 (1304)
T ss_pred cCCeeeEEEEEEEeeecCCchheeecccCCc
Confidence 88899999 999999 777778888888766
No 4
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.65 E-value=5.5e-17 Score=181.93 Aligned_cols=63 Identities=27% Similarity=0.289 Sum_probs=50.0
Q ss_pred ccCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh----------------hhHHHh---hc-----cCCcee
Q psy14141 620 GLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP----------------KVIERY---DC-----GGAGDV 675 (698)
Q Consensus 620 ~d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~----------------~~~~~i---~~-----~Ga~vi 675 (698)
.|+.||||||||||||+.+++.++.||||+|+|++||+.+.. .+++++ .+ +.+.||
T Consensus 75 ~D~~GHGThvAGIiag~~~~~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~VI 154 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGDNNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVI 154 (455)
T ss_pred CCCCCchHHHHHHHhcCCCCCCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 577899999999999998877889999999999999994322 244433 22 346799
Q ss_pred eeccccc
Q psy14141 676 DTSTVVK 682 (698)
Q Consensus 676 n~S~g~~ 682 (698)
|||||..
T Consensus 155 nlSlG~~ 161 (455)
T cd07478 155 NISLGTN 161 (455)
T ss_pred EEccCcC
Confidence 9999974
No 5
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.59 E-value=1.3e-15 Score=161.31 Aligned_cols=62 Identities=31% Similarity=0.254 Sum_probs=52.1
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCCh---h-----hhHHHhhccCCceeeeccccc
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGK---P-----KVIERYDCGGAGDVDTSTVVK 682 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~---~-----~~~~~i~~~Ga~vin~S~g~~ 682 (698)
+..+|||||||||||...+..+..||||+|+|+++|+.+. . +.++.++++|++|||||||..
T Consensus 83 ~~~gHGT~VAGiIaa~~~n~~g~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~ 152 (291)
T cd07483 83 SDADHGTHVAGIIAAVRDNGIGIDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKS 152 (291)
T ss_pred CCCCcHHHHHHHHhCcCCCCCceEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 5779999999999999888888999999999999999432 2 344455789999999999954
No 6
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.58 E-value=1.1e-15 Score=174.59 Aligned_cols=64 Identities=19% Similarity=0.075 Sum_probs=53.8
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh------hh---HHHhhccCCceeeecccccCC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP------KV---IERYDCGGAGDVDTSTVVKVD 684 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~------~~---~~~i~~~Ga~vin~S~g~~~~ 684 (698)
|+.||||||||||||...++.+..||||+|+|+++|+.+.. .+ ++.++++||+|||||||....
T Consensus 376 D~~GHGTHVAGIIAA~gnN~~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~~ 448 (639)
T PTZ00262 376 DDNYHGTHVSGIISAIGNNNIGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFDEY 448 (639)
T ss_pred CCCCcchHHHHHHhccccCCCceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccCCc
Confidence 66799999999999987778889999999999999996543 33 444578999999999997543
No 7
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.54 E-value=1.2e-14 Score=154.40 Aligned_cols=63 Identities=27% Similarity=0.180 Sum_probs=50.3
Q ss_pred cCCCCcceEEeeeeccCCC--------CCCcccccCCceEEEEEeCChh---------hhHHHhhccCCceeeecccccC
Q psy14141 621 LCSSHGTHVASIAAAYFPD--------EPEKNGVAPGAQIISLCIDGKP---------KVIERYDCGGAGDVDTSTVVKV 683 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~--------~~~~~GvAp~a~i~~vk~gd~~---------~~~~~i~~~Ga~vin~S~g~~~ 683 (698)
|..+||||||||+||+... .....||||+|+|+++|+.+.. +.++.++++|++|||||||...
T Consensus 106 d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~ 185 (307)
T cd04852 106 DYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYSIGGGS 185 (307)
T ss_pred cCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 5569999999999998653 2356799999999999997652 3344446789999999999764
No 8
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.47 E-value=4.5e-14 Score=152.01 Aligned_cols=67 Identities=30% Similarity=0.230 Sum_probs=53.8
Q ss_pred eccCCCCcceEEeeeeccCCC---CCCcccccCCceEEEEEeCCh--h------hh---HHHhhccCCceeeecccccCC
Q psy14141 619 VGLCSSHGTHVASIAAAYFPD---EPEKNGVAPGAQIISLCIDGK--P------KV---IERYDCGGAGDVDTSTVVKVD 684 (698)
Q Consensus 619 v~d~~~HGThVAgI~Aa~~~~---~~~~~GvAp~a~i~~vk~gd~--~------~~---~~~i~~~Ga~vin~S~g~~~~ 684 (698)
..+..+|||||||||||...+ +..+.||||+|+|+++|+.+. . .+ ++.+++.|++|||||||....
T Consensus 78 ~~~~~~HGT~vagiiag~~~~~~~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~ 157 (346)
T cd07475 78 EDDGSSHGMHVAGIVAGNGDEEDNGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAG 157 (346)
T ss_pred CCCCCCcHHHHHHHHhcCCCccccCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCC
Confidence 346779999999999998764 467999999999999999863 2 23 334467899999999998754
Q ss_pred C
Q psy14141 685 D 685 (698)
Q Consensus 685 ~ 685 (698)
.
T Consensus 158 ~ 158 (346)
T cd07475 158 F 158 (346)
T ss_pred C
Confidence 4
No 9
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.47 E-value=3e-14 Score=152.74 Aligned_cols=63 Identities=22% Similarity=0.050 Sum_probs=47.1
Q ss_pred cCCCCcceEEeeeeccCC---------CCCCcccccCCceEEEEEeCChh-----h-h----------HHHh--hccCCc
Q psy14141 621 LCSSHGTHVASIAAAYFP---------DEPEKNGVAPGAQIISLCIDGKP-----K-V----------IERY--DCGGAG 673 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~---------~~~~~~GvAp~a~i~~vk~gd~~-----~-~----------~~~i--~~~Ga~ 673 (698)
|+.+|||||||||||... ++.+..||||+|+||.+|+.+.. . + ++.. .++|++
T Consensus 54 D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 133 (311)
T cd07497 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVD 133 (311)
T ss_pred CccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCce
Confidence 567999999999999742 23468899999999999985321 0 1 1111 368999
Q ss_pred eeeecccccC
Q psy14141 674 DVDTSTVVKV 683 (698)
Q Consensus 674 vin~S~g~~~ 683 (698)
|||||||...
T Consensus 134 VIN~S~G~~~ 143 (311)
T cd07497 134 VISNSWGISN 143 (311)
T ss_pred EEEecCCcCC
Confidence 9999999754
No 10
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.45 E-value=4.9e-14 Score=146.71 Aligned_cols=58 Identities=21% Similarity=0.102 Sum_probs=46.7
Q ss_pred CCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh------hhHH---HhhccCCceeeeccccc
Q psy14141 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP------KVIE---RYDCGGAGDVDTSTVVK 682 (698)
Q Consensus 622 ~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~------~~~~---~i~~~Ga~vin~S~g~~ 682 (698)
+.+|||||||||||... ...||||+|+|+.+|+.+.. .+++ .+.++|++|||||||..
T Consensus 44 ~~gHGT~VAGiIa~~~~---~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~ 110 (255)
T cd07479 44 GLGHGTFVAGVIASSRE---QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGP 110 (255)
T ss_pred CCCcHHHHHHHHHccCC---CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCC
Confidence 45899999999999753 46899999999999996543 2333 44688999999999954
No 11
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.44 E-value=2.5e-13 Score=142.35 Aligned_cols=64 Identities=31% Similarity=0.254 Sum_probs=54.0
Q ss_pred cCCCCcceEEeeeeccCCCCC---CcccccCCceEEEEEeCChh----------hhHHHhhccCCceeeecccccCC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEP---EKNGVAPGAQIISLCIDGKP----------KVIERYDCGGAGDVDTSTVVKVD 684 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~---~~~GvAp~a~i~~vk~gd~~----------~~~~~i~~~Ga~vin~S~g~~~~ 684 (698)
|..+|||||||||+|...+.. +..||||+|+|+.+|+.+.. ++++.+.+.|++|||||||....
T Consensus 52 d~~~HGT~vAgiia~~~~~~~~~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~ 128 (293)
T cd04842 52 DVDGHGTHVAGIIAGKGNDSSSISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVN 128 (293)
T ss_pred CCCCCcchhheeeccCCcCCCcccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCc
Confidence 446999999999999977765 78999999999999996542 56667788899999999998765
No 12
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.44 E-value=7.2e-14 Score=148.03 Aligned_cols=61 Identities=25% Similarity=0.144 Sum_probs=48.5
Q ss_pred CCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh---------hhHHHhhccCCceeeecccccC
Q psy14141 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP---------KVIERYDCGGAGDVDTSTVVKV 683 (698)
Q Consensus 622 ~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~---------~~~~~i~~~Ga~vin~S~g~~~ 683 (698)
.++|||||||||+|...+ ....||||+|+|+.+|+.+.. +.++.+.++|++|||||||...
T Consensus 45 ~~gHGT~VAgiiag~~~~-~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~ 114 (297)
T cd07480 45 GHGHGTHCAGTIFGRDVP-GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADF 114 (297)
T ss_pred CCCcHHHHHHHHhcccCC-CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCC
Confidence 459999999999997655 346799999999999984322 2344457899999999999865
No 13
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.40 E-value=3.1e-13 Score=140.64 Aligned_cols=63 Identities=21% Similarity=0.111 Sum_probs=48.6
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh-----hhHHHh---------------hccCCceeeeccc
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP-----KVIERY---------------DCGGAGDVDTSTV 680 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~-----~~~~~i---------------~~~Ga~vin~S~g 680 (698)
|..+|||||||||+|...+.. ..||||+|+|+.+|+.+.. .+++++ .++|++|||||||
T Consensus 50 d~~~HGT~vagii~g~~~~~~-~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G 128 (264)
T cd07481 50 DDNGHGTHTMGTMVGNDGDGQ-QIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWG 128 (264)
T ss_pred CCCCchhhhhhheeecCCCCC-ceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCC
Confidence 446999999999999866544 4999999999999996543 233322 2489999999999
Q ss_pred ccCC
Q psy14141 681 VKVD 684 (698)
Q Consensus 681 ~~~~ 684 (698)
....
T Consensus 129 ~~~~ 132 (264)
T cd07481 129 GPSG 132 (264)
T ss_pred cCCC
Confidence 7765
No 14
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.38 E-value=4.4e-13 Score=141.04 Aligned_cols=65 Identities=29% Similarity=0.248 Sum_probs=52.9
Q ss_pred ccCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh-----hhHHHh---h----------ccCCceeeecccc
Q psy14141 620 GLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP-----KVIERY---D----------CGGAGDVDTSTVV 681 (698)
Q Consensus 620 ~d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~-----~~~~~i---~----------~~Ga~vin~S~g~ 681 (698)
.+..+|||||||||||...++.++.||||+|+|+++|+.+.. .+++++ . .++++|||||||.
T Consensus 68 ~~~~~HGT~vAgiiaa~~~~~~~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~ 147 (285)
T cd07496 68 SPSSWHGTHVAGTIAAVTNNGVGVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGG 147 (285)
T ss_pred CCCCCCHHHHHHHHhCcCCCCCCceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCC
Confidence 356799999999999998878889999999999999995533 344444 2 5789999999997
Q ss_pred cCC
Q psy14141 682 KVD 684 (698)
Q Consensus 682 ~~~ 684 (698)
...
T Consensus 148 ~~~ 150 (285)
T cd07496 148 DGA 150 (285)
T ss_pred CCC
Confidence 654
No 15
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.38 E-value=4.7e-13 Score=142.53 Aligned_cols=62 Identities=32% Similarity=0.266 Sum_probs=50.4
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh---------hhHHHhhccCCceeeecccccC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP---------KVIERYDCGGAGDVDTSTVVKV 683 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~---------~~~~~i~~~Ga~vin~S~g~~~ 683 (698)
|..+||||||||+++...+ .++.||||+|+|+++|+.+.. +.++.+.++|++|||||||...
T Consensus 66 d~~gHGT~vAgiia~~~~~-~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~ 136 (312)
T cd07489 66 DCQGHGTHVAGIIAANPNA-YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS 136 (312)
T ss_pred CCCCcHHHHHHHHhcCCCC-CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC
Confidence 3459999999999998655 679999999999999996533 2344447889999999999753
No 16
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.35 E-value=1e-12 Score=138.51 Aligned_cols=72 Identities=31% Similarity=0.434 Sum_probs=63.4
Q ss_pred ecCCCCCCceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccCCC-CCCCccccccccHHHHHH
Q psy14141 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPS-VEPYAQGFGLLQVEKALE 78 (698)
Q Consensus 3 ~St~~~~~y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~ik~aL~~TA~~~~~-~~~~~~G~Gli~v~~A~~ 78 (698)
.+++.+++|..++|||||+|||||++|||+ +.+|.+++.+||++|++||+++.. ..+..+|||+||+.+|++
T Consensus 202 ~~~~~~~~~~~~sGTS~AaP~VaG~aALl~----~~~p~lt~~~v~~~L~~tA~~~~~~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 202 TVDGDGDGPPNFFGTSAAAPHAAGVAALVL----SANPGLTPADIRDALRSTALDMGEPGYDNASGSGLVDADRAVA 274 (275)
T ss_pred cCCCcCCceeecccchHHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHhCcccCCCCCCCCcCcCcccHHHHhh
Confidence 356677889999999999999999999997 456799999999999999998853 366789999999999986
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.32 E-value=1.3e-12 Score=136.61 Aligned_cols=63 Identities=32% Similarity=0.255 Sum_probs=48.8
Q ss_pred cCCCCcceEEeeeeccCCCCCCc------ccccCCceEEEEEeCChh---------hhHHHhhccCCceeeecccccC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEK------NGVAPGAQIISLCIDGKP---------KVIERYDCGGAGDVDTSTVVKV 683 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~------~GvAp~a~i~~vk~gd~~---------~~~~~i~~~Ga~vin~S~g~~~ 683 (698)
+..+||||||||+++..++.... .|+||+|+|+++|+.+.. +.++.+.++|++|||||||...
T Consensus 59 ~~~gHGT~VAgiia~~~~~~~~~g~i~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~ 136 (273)
T cd07485 59 VGGGHGTHVAGTIAAVNNNGGGVGGIAGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG 136 (273)
T ss_pred CCCCCHHHHHHHHHcccCCCcceeccccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC
Confidence 45699999999999976543322 249999999999996642 3445557889999999999765
No 18
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.32 E-value=1.4e-12 Score=134.22 Aligned_cols=62 Identities=23% Similarity=0.088 Sum_probs=49.8
Q ss_pred CCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh-----h---hHHHhhccCCceeeecccccCC
Q psy14141 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP-----K---VIERYDCGGAGDVDTSTVVKVD 684 (698)
Q Consensus 622 ~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~-----~---~~~~i~~~Ga~vin~S~g~~~~ 684 (698)
..+|||||||||+|...+ ....||||+|+|+++|+.+.. . .++.+.++|++|||||||....
T Consensus 42 ~~~HGT~vAgiia~~~~~-~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~ 111 (254)
T cd07490 42 AGGHGTHVSGTIGGGGAK-GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYY 111 (254)
T ss_pred CCCcHHHHHHHHhcCCCC-CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCC
Confidence 458999999999998764 456799999999999996533 2 3444467999999999997654
No 19
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.30 E-value=2.8e-12 Score=132.66 Aligned_cols=62 Identities=31% Similarity=0.273 Sum_probs=51.8
Q ss_pred CCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh------h---hHHHhhccCCceeeecccccC
Q psy14141 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP------K---VIERYDCGGAGDVDTSTVVKV 683 (698)
Q Consensus 622 ~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~------~---~~~~i~~~Ga~vin~S~g~~~ 683 (698)
..+||||||||+++...+..++.|+||+|+|+.+|+.+.. . .++.+..+|++|||||||...
T Consensus 67 ~~~HGT~vagii~~~~~~~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~ 137 (260)
T cd07484 67 DNGHGTHVAGIIAAATNNGTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL 137 (260)
T ss_pred CCCcHHHHHHHHhCccCCCCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC
Confidence 4589999999999987777889999999999999996653 2 344457889999999999653
No 20
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.30 E-value=3.8e-12 Score=134.00 Aligned_cols=64 Identities=25% Similarity=0.071 Sum_probs=49.6
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh----hhHHHh--hccCCceeeecccccCC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP----KVIERY--DCGGAGDVDTSTVVKVD 684 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~----~~~~~i--~~~Ga~vin~S~g~~~~ 684 (698)
+..+||||||||+||..++..+..||||+|+|+++|+.+.. ....++ ....++|||||||....
T Consensus 82 ~~~gHGT~vAgiiag~~~~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~ 151 (297)
T cd04059 82 DDNSHGTRCAGEIAAVGNNGICGVGVAPGAKLGGIRMLDGDVTDVVEAESLGLNPDYIDIYSNSWGPDDD 151 (297)
T ss_pred cccccCcceeeEEEeecCCCcccccccccceEeEEEecCCccccHHHHHHHhcccCCceEEECCCCCCCC
Confidence 44699999999999997776678999999999999998764 122222 23456999999997644
No 21
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.29 E-value=4.3e-12 Score=133.31 Aligned_cols=63 Identities=30% Similarity=0.290 Sum_probs=52.5
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh---------hhHHHhhccCCceeeecccccC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP---------KVIERYDCGGAGDVDTSTVVKV 683 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~---------~~~~~i~~~Ga~vin~S~g~~~ 683 (698)
+..+||||||||++|...+.....|+||+|+|+++|+.+.. +.++.+++.+++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNVGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCccCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 56799999999999998777889999999999999997522 3444557889999999999653
No 22
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.28 E-value=2.9e-12 Score=132.22 Aligned_cols=64 Identities=30% Similarity=0.154 Sum_probs=53.1
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh---------hhHHHhhccCCceeeecccccCC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP---------KVIERYDCGGAGDVDTSTVVKVD 684 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~---------~~~~~i~~~Ga~vin~S~g~~~~ 684 (698)
|..+||||||||++|...+...+.||||+|+|+.+|+.+.. +.++.+.+.|++|||+|||....
T Consensus 61 d~~~HGT~va~ii~~~~~~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~ 133 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNNGIGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP 133 (259)
T ss_pred CCCCcHHHHHHHHHCcCCCCCceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC
Confidence 56799999999999998777788999999999999985543 33444467999999999997644
No 23
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.28 E-value=3.1e-12 Score=131.77 Aligned_cols=63 Identities=29% Similarity=0.317 Sum_probs=50.5
Q ss_pred CCCCcceEEeeeeccCCC-CCCcccccCCceEEEEEeCChh------hhH---HHhhcc----CCceeeecccccCC
Q psy14141 622 CSSHGTHVASIAAAYFPD-EPEKNGVAPGAQIISLCIDGKP------KVI---ERYDCG----GAGDVDTSTVVKVD 684 (698)
Q Consensus 622 ~~~HGThVAgI~Aa~~~~-~~~~~GvAp~a~i~~vk~gd~~------~~~---~~i~~~----Ga~vin~S~g~~~~ 684 (698)
..+||||||||++|...+ .....||||+|+|+++|+.+.. .++ +.+.++ |++|||||||...+
T Consensus 43 ~~~HGT~vAgiiag~~~~~~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~ 119 (264)
T cd07487 43 DNGHGTHVAGIIAGSGRASNGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPD 119 (264)
T ss_pred CCCchHHHHHHHhcCCcccCCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCC
Confidence 458999999999998765 5668999999999999996543 333 444555 99999999997754
No 24
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.26 E-value=4.6e-12 Score=133.01 Aligned_cols=60 Identities=27% Similarity=0.216 Sum_probs=47.3
Q ss_pred CCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh----------hhHHHhhccCCceeeecccccC
Q psy14141 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP----------KVIERYDCGGAGDVDTSTVVKV 683 (698)
Q Consensus 622 ~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~----------~~~~~i~~~Ga~vin~S~g~~~ 683 (698)
..+||||||||++|+..+ ...||||+|+|+++|+.+.. +.++..+++|++|||||||...
T Consensus 49 ~~gHGT~VAgii~g~~~~--~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~ 118 (267)
T cd07476 49 ASAHGTHVASLIFGQPCS--SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLT 118 (267)
T ss_pred CCCcHHHHHHHHhcCCCC--CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCC
Confidence 459999999999998543 48899999999999983221 2344447899999999999643
No 25
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.25 E-value=2.6e-12 Score=133.54 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=43.7
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh---------------hhHHHhhccCCceeeecccccCC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP---------------KVIERYDCGGAGDVDTSTVVKVD 684 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~---------------~~~~~i~~~Ga~vin~S~g~~~~ 684 (698)
|+.+|||||||||+ |+||+|+|+++|+.+.. +.++.++++|++|||||||....
T Consensus 47 d~~gHGT~vAgiI~----------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~ 115 (247)
T cd07491 47 SADGHGTAMARMIC----------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKP 115 (247)
T ss_pred CCCCcHHHHHHHHH----------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccc
Confidence 45699999999996 69999999999996531 33444578999999999997654
No 26
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.23 E-value=6.8e-12 Score=128.54 Aligned_cols=63 Identities=27% Similarity=0.235 Sum_probs=52.0
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh----------hhHHHhhccCCceeeecccccCC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP----------KVIERYDCGGAGDVDTSTVVKVD 684 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~----------~~~~~i~~~Ga~vin~S~g~~~~ 684 (698)
+..+||||||||++|...+ ....|+||+|+|+++|+.+.. ..++.+.+.+++|||||||....
T Consensus 44 ~~~~HGT~vagiiag~~~~-~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~ 116 (267)
T cd04848 44 DGDSHGTHVAGVIAAARDG-GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPA 116 (267)
T ss_pred CCCChHHHHHHHHhcCcCC-CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCc
Confidence 4469999999999998765 678999999999999996431 34555678999999999998753
No 27
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.23 E-value=1.7e-11 Score=130.65 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=44.5
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh-----hhHHHhhccCCceeeecccccCCC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP-----KVIERYDCGGAGDVDTSTVVKVDD 685 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~-----~~~~~i~~~Ga~vin~S~g~~~~~ 685 (698)
|+.||||||||++ .||||+|+|+.+|+.+.. ..++.++++|++|||||||....+
T Consensus 59 D~~gHGT~vag~i----------~GvAP~a~i~~vkv~~~~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~ 118 (298)
T cd07494 59 DENGHGTGESANL----------FAIAPGAQFIGVKLGGPDLVNSVGAFKKAISLSPDIISNSWGYDLRS 118 (298)
T ss_pred CCCCcchheeece----------eEeCCCCeEEEEEccCCCcHHHHHHHHHHHhcCCCEEEeecccCCCC
Confidence 4569999999875 489999999999998754 344555789999999999976443
No 28
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.22 E-value=9.7e-12 Score=128.44 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=43.9
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh------hhHHHh---hcc-----CCceeeecccccC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP------KVIERY---DCG-----GAGDVDTSTVVKV 683 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~------~~~~~i---~~~-----Ga~vin~S~g~~~ 683 (698)
|..+||||||||+++. ..||||+|+|+++|+.+.. .+++++ +.+ +++|||||||...
T Consensus 61 d~~~HGT~vAgiia~~------~~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~ 131 (255)
T cd04077 61 DCNGHGTHVAGTVGGK------TYGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA 131 (255)
T ss_pred CCCccHHHHHHHHHcc------ccCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC
Confidence 3458999999999986 3699999999999996543 233333 333 6999999999754
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.18 E-value=2e-11 Score=123.33 Aligned_cols=63 Identities=30% Similarity=0.217 Sum_probs=50.4
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh---------hhHHHhhccCCceeeecccccCC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP---------KVIERYDCGGAGDVDTSTVVKVD 684 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~---------~~~~~i~~~Ga~vin~S~g~~~~ 684 (698)
+..+||||||||+++...+. ...|+||+|+|+.+|+.+.. +.++.++++|++|||||||...+
T Consensus 38 ~~~~HGT~vA~ii~~~~~~~-~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~ 109 (229)
T cd07477 38 DGNGHGTHVAGIIAALDNGV-GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD 109 (229)
T ss_pred CCCCCHHHHHHHHhcccCCC-ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC
Confidence 34589999999999986443 78999999999999996544 23445578999999999997543
No 30
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.18 E-value=1.8e-11 Score=129.19 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=43.9
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh----hhHHHhhccCCceeeeccccc
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP----KVIERYDCGGAGDVDTSTVVK 682 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~----~~~~~i~~~Ga~vin~S~g~~ 682 (698)
|..+|||||||||+ ||||+|+|+.+|.++.. ..++.++++|++|||||||..
T Consensus 46 d~~gHGT~vAgii~----------GvAP~a~l~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~g~~ 101 (275)
T cd05562 46 GGGDEGRAMLEIIH----------DIAPGAELAFHTAGGGELDFAAAIRALAAAGADIIVDDIGYL 101 (275)
T ss_pred CCCchHHHHHHHHh----------ccCCCCEEEEEecCCCHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 45699999999994 89999999999997655 345556899999999999974
No 31
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.18 E-value=4.8e-11 Score=126.11 Aligned_cols=63 Identities=24% Similarity=0.205 Sum_probs=46.5
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh---h-hHHHhh---ccCCceeeecccccCC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP---K-VIERYD---CGGAGDVDTSTVVKVD 684 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~---~-~~~~i~---~~Ga~vin~S~g~~~~ 684 (698)
|+.+|||||||||||. .+..+..||||+|+|+++|+.+.. . ++.++. ..+..+||||||....
T Consensus 49 d~~gHGT~VAGiIaa~-~n~~G~~GvAp~a~l~~i~v~~~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~ 118 (277)
T cd04843 49 ADSDHGTAVLGIIVAK-DNGIGVTGIAHGAQAAVVSSTRVSNTADAILDAADYLSPGDVILLEMQTGGPNN 118 (277)
T ss_pred CCCCCcchhheeeeee-cCCCceeeeccCCEEEEEEecCCCCHHHHHHHHHhccCCCCEEEEEccccCCCc
Confidence 4459999999999996 455678999999999999997522 2 333333 2345578999987643
No 32
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.15 E-value=5.5e-11 Score=136.61 Aligned_cols=78 Identities=27% Similarity=0.319 Sum_probs=67.2
Q ss_pred eecCCCCCCceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccCCCCCCCccccccccHHHHHHHHH
Q psy14141 2 FSSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEKALEWLE 81 (698)
Q Consensus 2 ~~St~~~~~y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~ik~aL~~TA~~~~~~~~~~~G~Gli~v~~A~~~l~ 81 (698)
+.|+++.++|..++|||||||||||++|||+| .+|.+++.+|+++|.+||.++++.+....+.|+||+.+|++...
T Consensus 541 I~St~p~g~Y~~~SGTSmAAP~VAGvAALLlS----~~P~LT~~qV~~iL~~TA~~l~~~~n~~~wgG~LDa~kAV~~Ai 616 (639)
T PTZ00262 541 IYSTFPKNSYRKLNGTSMAAPHVAAIASLILS----INPSLSYEEVIRILKESIVQLPSLKNKVKWGGYLDIHHAVNLAI 616 (639)
T ss_pred eeeccCCCceeecCCCchhHHHHHHHHHHHHh----hCCCCCHHHHHHHHHHhCccCCCCCCccccCcEEcHHHHHHHHH
Confidence 45788889999999999999999999999974 56799999999999999999877655445558999999998765
Q ss_pred Hh
Q psy14141 82 KY 83 (698)
Q Consensus 82 ~~ 83 (698)
..
T Consensus 617 ~~ 618 (639)
T PTZ00262 617 AS 618 (639)
T ss_pred hc
Confidence 43
No 33
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.10 E-value=9.6e-11 Score=126.27 Aligned_cols=76 Identities=32% Similarity=0.393 Sum_probs=64.4
Q ss_pred ecCCCCCCceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHH----HHHHHHhccccCCC-------CCCCccccccc
Q psy14141 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYS----IRRALEITAQYIPS-------VEPYAQGFGLL 71 (698)
Q Consensus 3 ~St~~~~~y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~----ik~aL~~TA~~~~~-------~~~~~~G~Gli 71 (698)
.|+...+.|..++|||||||+|||++|||+|++++.+|.+++.+ ||.+|++||.+... +.+..+|+|+|
T Consensus 260 ~s~~~~~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~~~~~~~~~~~G~G~v 339 (346)
T cd07475 260 YSTVNDNTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDTKTYYSPRRQGAGLI 339 (346)
T ss_pred EEecCCCceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccCCCCccCCccccCcchh
Confidence 35566778999999999999999999999999999999999977 78888999984321 35667899999
Q ss_pred cHHHHHH
Q psy14141 72 QVEKALE 78 (698)
Q Consensus 72 ~v~~A~~ 78 (698)
|+.||++
T Consensus 340 n~~~Av~ 346 (346)
T cd07475 340 DVAKAIA 346 (346)
T ss_pred cHHHhhC
Confidence 9999974
No 34
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.01 E-value=2.6e-10 Score=118.86 Aligned_cols=57 Identities=28% Similarity=0.447 Sum_probs=51.9
Q ss_pred cCCCCCCceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccCCC
Q psy14141 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPS 60 (698)
Q Consensus 4 St~~~~~y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~ik~aL~~TA~~~~~ 60 (698)
++...++|..++|||||+|||||++|||+|+++++++.++|.+||++|++||+++++
T Consensus 199 ~~~~~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~~ 255 (255)
T cd07479 199 GSKLKGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLPG 255 (255)
T ss_pred ccccCCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCCC
Confidence 445567899999999999999999999999998888899999999999999998863
No 35
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.96 E-value=5.3e-10 Score=117.59 Aligned_cols=64 Identities=36% Similarity=0.437 Sum_probs=56.4
Q ss_pred CCceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccCCCC-----CCCccccccccHHHH
Q psy14141 9 KETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSV-----EPYAQGFGLLQVEKA 76 (698)
Q Consensus 9 ~~y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~ik~aL~~TA~~~~~~-----~~~~~G~Gli~v~~A 76 (698)
..|..++|||||||+|||++|||+ +.+|.+++.+||.+|++||.++... +...+|+|+||+.+|
T Consensus 227 ~~~~~~~GTS~AaP~vaG~aAll~----~~~p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 227 TGYARMSGTSMAAPHVAGAAALLK----QAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred CceEEeccHHHHHHHHHHHHHHHH----hhCCCCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 678999999999999999999996 5557999999999999999987542 247899999999886
No 36
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.95 E-value=5.8e-10 Score=118.90 Aligned_cols=70 Identities=34% Similarity=0.375 Sum_probs=60.5
Q ss_pred CceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccCCC----------CCCCccccccccHHHHHHH
Q psy14141 10 ETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPS----------VEPYAQGFGLLQVEKALEW 79 (698)
Q Consensus 10 ~y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~ik~aL~~TA~~~~~----------~~~~~~G~Gli~v~~A~~~ 79 (698)
.|..++|||||||+|||++|||+|++ ++.+++.+||++|.+||.++.. .+...+|+|+||+.+|++.
T Consensus 223 ~~~~~~GTS~Aap~vaG~~Al~~~~~---~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~a~~~ 299 (312)
T cd07489 223 GYAVLSGTSMATPYVAGAAALLIQAR---HGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAYKALYA 299 (312)
T ss_pred ceEeeccHHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHHHHhcC
Confidence 39999999999999999999998655 4799999999999999998743 2346899999999999987
Q ss_pred HHH
Q psy14141 80 LEK 82 (698)
Q Consensus 80 l~~ 82 (698)
..+
T Consensus 300 ~~~ 302 (312)
T cd07489 300 TTT 302 (312)
T ss_pred Ccc
Confidence 644
No 37
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.95 E-value=1.4e-09 Score=113.02 Aligned_cols=64 Identities=27% Similarity=0.207 Sum_probs=50.6
Q ss_pred ccCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh--------h---hHHHhhccCCceeeecccccCCC
Q psy14141 620 GLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP--------K---VIERYDCGGAGDVDTSTVVKVDD 685 (698)
Q Consensus 620 ~d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~--------~---~~~~i~~~Ga~vin~S~g~~~~~ 685 (698)
.+..+||||||||+||..++ ...||||+|+|+.+|+.+.. . .++...++|++|||||||....+
T Consensus 44 ~~~~~HGT~vagiia~~~~~--~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~ 118 (261)
T cd07493 44 YTDDDHGTAVLSTMAGYTPG--VMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFD 118 (261)
T ss_pred CCCCCchhhhheeeeeCCCC--CEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCC
Confidence 46789999999999998653 47899999999999985433 1 22334678999999999976544
No 38
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=98.93 E-value=9.9e-10 Score=123.74 Aligned_cols=67 Identities=21% Similarity=0.160 Sum_probs=59.6
Q ss_pred ecCCCCCCceeeCCccchhHHHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHhccccCC--CCCCCccccc
Q psy14141 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQ--QGLSYSPYSIRRALEITAQYIP--SVEPYAQGFG 69 (698)
Q Consensus 3 ~St~~~~~y~~~sGTSMAsP~vAGaaALLlS~~k~--~~~~~tp~~ik~aL~~TA~~~~--~~~~~~~G~G 69 (698)
-|+.+.++|..++|||||||||||++|||+++... .+|.+++.+||++|+++|+++. .+++..+|||
T Consensus 385 ~s~~~~~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~~~~pn~~~GyG 455 (455)
T cd07478 385 LTASPGGGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGDEYPNPEWGYG 455 (455)
T ss_pred EEeecCCcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCCCCCCCCCCCCC
Confidence 46677889999999999999999999999998754 4678999999999999999986 4688999998
No 39
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.92 E-value=1.2e-09 Score=112.74 Aligned_cols=59 Identities=27% Similarity=0.326 Sum_probs=48.0
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCCh-------h-----hhHHHhhccCCceeeeccccc
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGK-------P-----KVIERYDCGGAGDVDTSTVVK 682 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~-------~-----~~~~~i~~~Ga~vin~S~g~~ 682 (698)
+..+|||||||||++...+. .||||+|+|+.+|+.+. . +.++.++++|++|||||||..
T Consensus 34 ~~~~HGT~vAgiia~~~~~~---~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~ 104 (239)
T cd05561 34 APSAHGTAVASLLAGAGAQR---PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP 104 (239)
T ss_pred CCCCCHHHHHHHHhCCCCCC---cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC
Confidence 56799999999999986543 89999999999999442 1 344555889999999999854
No 40
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.91 E-value=1.1e-09 Score=111.95 Aligned_cols=64 Identities=28% Similarity=0.254 Sum_probs=53.4
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh---------hhHHHhhccCCceeeecccccCC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP---------KVIERYDCGGAGDVDTSTVVKVD 684 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~---------~~~~~i~~~Ga~vin~S~g~~~~ 684 (698)
+..+||||||||++++..+..++.||||+|+|+++|+.+.. +.++.+.++|++|||||||....
T Consensus 38 ~~~~HGT~vAgiiag~~~~~~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~ 110 (242)
T cd07498 38 DIDGHGTACAGVAAAVGNNGLGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDS 110 (242)
T ss_pred CCCCCHHHHHHHHHhccCCCceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCC
Confidence 56799999999999998767789999999999999996543 23344467999999999997655
No 41
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=98.89 E-value=1.9e-09 Score=113.00 Aligned_cols=62 Identities=29% Similarity=0.139 Sum_probs=48.9
Q ss_pred ccCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh------hh---HHHhhccCCceeeecccccCCC
Q psy14141 620 GLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP------KV---IERYDCGGAGDVDTSTVVKVDD 685 (698)
Q Consensus 620 ~d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~------~~---~~~i~~~Ga~vin~S~g~~~~~ 685 (698)
.|..+||||||||+||+.. ..||||+|+|+++|+.+.. .+ ++.++++|++|||||||.....
T Consensus 50 ~d~~gHGT~vAgiia~~~~----~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~ 120 (294)
T cd07482 50 VDKLGHGTAVAGQIAANGN----IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLII 120 (294)
T ss_pred CCCCCcHhHHHHHHhcCCC----CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCC
Confidence 4678999999999999743 3499999999999995544 33 3444788999999999976443
No 42
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.86 E-value=2.5e-09 Score=110.44 Aligned_cols=62 Identities=26% Similarity=0.352 Sum_probs=53.5
Q ss_pred ecCCCCCCceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccCCC-CCCCccccc
Q psy14141 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPS-VEPYAQGFG 69 (698)
Q Consensus 3 ~St~~~~~y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~ik~aL~~TA~~~~~-~~~~~~G~G 69 (698)
.++...++|..++|||||||||||++|||+ +.+| +++.+||++|++||+++.. ..+..+|||
T Consensus 177 ~~~~~~~~~~~~sGTS~AaP~vaG~aAll~----~~~p-~~~~~i~~~L~~ta~~~g~~~~d~~~G~G 239 (239)
T cd05561 177 WVAAPGGGYRYVSGTSFAAPFVTAALALLL----QASP-LAPDDARARLAATAKDLGPPGRDPVFGYG 239 (239)
T ss_pred ecccCCCCEEEeCCHHHHHHHHHHHHHHHH----hcCC-CCHHHHHHHHHHHhhccCCCCcCCCcCCC
Confidence 456778899999999999999999999997 4566 9999999999999998853 356678887
No 43
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=98.85 E-value=2.8e-09 Score=112.12 Aligned_cols=58 Identities=29% Similarity=0.340 Sum_probs=53.2
Q ss_pred ecCCCCCCceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccCCC
Q psy14141 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPS 60 (698)
Q Consensus 3 ~St~~~~~y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~ik~aL~~TA~~~~~ 60 (698)
.|+.+.+.|..++|||||||||||++|||+|..++.++.++|.+||++|++||.++..
T Consensus 197 ~~~~~~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 197 LGAALGGEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred eeecCCCCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 3567778899999999999999999999999998888889999999999999999854
No 44
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.84 E-value=2.5e-09 Score=113.03 Aligned_cols=65 Identities=20% Similarity=0.069 Sum_probs=49.6
Q ss_pred ccCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh-------------hhHHHhhcc-C--CceeeecccccC
Q psy14141 620 GLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP-------------KVIERYDCG-G--AGDVDTSTVVKV 683 (698)
Q Consensus 620 ~d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~-------------~~~~~i~~~-G--a~vin~S~g~~~ 683 (698)
.|..+|||||||||++...+.....|+||+|+|+.+|+.+.. +.++.++++ + ++|||||||...
T Consensus 35 ~d~~gHGT~vAgiia~~~~~~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~ 114 (291)
T cd04847 35 ADDLGHGTAVAGLALYGDLTLPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPL 114 (291)
T ss_pred CCCCCChHHHHHHHHcCcccCCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCC
Confidence 477899999999999876556678999999999999994431 233334442 3 499999999874
Q ss_pred C
Q psy14141 684 D 684 (698)
Q Consensus 684 ~ 684 (698)
.
T Consensus 115 ~ 115 (291)
T cd04847 115 P 115 (291)
T ss_pred C
Confidence 4
No 45
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=98.83 E-value=1.8e-09 Score=112.14 Aligned_cols=65 Identities=32% Similarity=0.441 Sum_probs=56.3
Q ss_pred CceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccCC---C-CCCCccccccccHHHHHH
Q psy14141 10 ETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIP---S-VEPYAQGFGLLQVEKALE 78 (698)
Q Consensus 10 ~y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~ik~aL~~TA~~~~---~-~~~~~~G~Gli~v~~A~~ 78 (698)
.|..++|||||||+|||++|||+| ..|.+++.+||++|++||.++. . .....+|||+||+.||++
T Consensus 214 ~~~~~~GTS~Aap~vag~~All~~----~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 214 SYTSFSGTSFAAPVVAGAAALLLS----KYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp EEEEEESHHHHHHHHHHHHHHHHH----HSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred cccccCcCCchHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 377899999999999999999975 5678999999999999999987 2 345678999999999986
No 46
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.83 E-value=4.2e-09 Score=112.47 Aligned_cols=61 Identities=31% Similarity=0.393 Sum_probs=50.9
Q ss_pred cCCCCCCceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccCCCCCCCccccc
Q psy14141 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFG 69 (698)
Q Consensus 4 St~~~~~y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~ik~aL~~TA~~~~~~~~~~~G~G 69 (698)
++....+|..|+|||||+|||||++|||+ +.+|.+++.+||++|+.||.++.. ....||-|
T Consensus 235 ~~~~~~~y~~~sGTS~Aap~vaG~aAll~----~~~p~~~~~~v~~~l~~ta~~~~~-~~~~~~~~ 295 (298)
T cd07494 235 GTPPNDGWGVFSGTSAAAPQVAGVCALML----QANPGLSPERARSLLNKTARDVTK-GASAQGTS 295 (298)
T ss_pred CCCCCCCeEeeccchHHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHhCcccCC-CCCccCCC
Confidence 34667789999999999999999999996 567899999999999999998854 34445443
No 47
>KOG4266|consensus
Probab=98.79 E-value=2.1e-08 Score=112.41 Aligned_cols=82 Identities=27% Similarity=0.425 Sum_probs=73.5
Q ss_pred CCCCCCceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccCCCCCCCccccccccHHHHHHHHHHhc
Q psy14141 5 SSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEKALEWLEKYH 84 (698)
Q Consensus 5 t~~~~~y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~ik~aL~~TA~~~~~~~~~~~G~Gli~v~~A~~~l~~~~ 84 (698)
+....|...+||||.|||.|||+++||+|...|+.--++|+.+|+||..+|.+++++..|+||+|.+|+.++++.|..+.
T Consensus 392 S~v~~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~NMfEQGaGkldLL~syqiL~SYk 471 (1033)
T KOG4266|consen 392 SKVSTGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPNMFEQGAGKLDLLESYQILKSYK 471 (1033)
T ss_pred CcccccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCchhhccCcchhHHHHHHHHHhcC
Confidence 34556788999999999999999999999765665568999999999999999999999999999999999999998886
Q ss_pred cc
Q psy14141 85 AE 86 (698)
Q Consensus 85 ~~ 86 (698)
+.
T Consensus 472 P~ 473 (1033)
T KOG4266|consen 472 PR 473 (1033)
T ss_pred CC
Confidence 54
No 48
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.68 E-value=1.4e-08 Score=107.92 Aligned_cols=72 Identities=28% Similarity=0.385 Sum_probs=52.6
Q ss_pred ecCCCCCCceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcc--ccCCCCCCCccccccccHH
Q psy14141 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA--QYIPSVEPYAQGFGLLQVE 74 (698)
Q Consensus 3 ~St~~~~~y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~ik~aL~~TA--~~~~~~~~~~~G~Gli~v~ 74 (698)
.|++.++.|..++|||||||+|||++|||+|++++......+..|++.|.+++ ...++.....+|+|+++++
T Consensus 223 ~s~~~~~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 223 VSAAPGGGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred EeecCCCcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCCCCCCCChhhcCCceeecC
Confidence 46788899999999999999999999999866554333333444444444433 2345578889999999875
No 49
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.59 E-value=4.9e-08 Score=98.89 Aligned_cols=54 Identities=31% Similarity=0.232 Sum_probs=44.1
Q ss_pred cCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh---------hhHHHhhccCCceeeecccccCC
Q psy14141 621 LCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP---------KVIERYDCGGAGDVDTSTVVKVD 684 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~---------~~~~~i~~~Ga~vin~S~g~~~~ 684 (698)
|..+||||||||+++. +|+++|+++|+.+.. +.++.+.++|++|||||||....
T Consensus 42 d~~gHGT~vAgiia~~----------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~ 104 (222)
T cd07492 42 DKDGHGTACAGIIKKY----------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD 104 (222)
T ss_pred CCCCcHHHHHHHHHcc----------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC
Confidence 6779999999999875 499999999996544 34455578999999999997644
No 50
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=98.51 E-value=3.4e-08 Score=102.60 Aligned_cols=62 Identities=34% Similarity=0.347 Sum_probs=51.3
Q ss_pred ccCCCCcceEEeeeeccC-CCCCCcccccCCceEEEEEeCChh-----hhHHHh---h-ccCCceeeecccc
Q psy14141 620 GLCSSHGTHVASIAAAYF-PDEPEKNGVAPGAQIISLCIDGKP-----KVIERY---D-CGGAGDVDTSTVV 681 (698)
Q Consensus 620 ~d~~~HGThVAgI~Aa~~-~~~~~~~GvAp~a~i~~vk~gd~~-----~~~~~i---~-~~Ga~vin~S~g~ 681 (698)
.+..+||||||||+++.. .++....|+||+|+|+.+|+.+.. .+++++ . ..+++|||||||.
T Consensus 43 ~~~~~HGT~va~ii~~~~~~~~~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~ 114 (282)
T PF00082_consen 43 DDDNGHGTHVAGIIAGNGGNNGPGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGS 114 (282)
T ss_dssp STSSSHHHHHHHHHHHTTSSSSSSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEB
T ss_pred ccCCCccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhccCCccccccccc
Confidence 356789999999999997 677788999999999999995444 344444 4 7899999999998
No 51
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.30 E-value=1.3e-07 Score=98.60 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=45.2
Q ss_pred ccCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh------hhHHHh-hccCCceeeecccccCCC
Q psy14141 620 GLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP------KVIERY-DCGGAGDVDTSTVVKVDD 685 (698)
Q Consensus 620 ~d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~------~~~~~i-~~~Ga~vin~S~g~~~~~ 685 (698)
.|+++|||||||||||. .|++|+|+++..+++... .+..++ .++|++|||||||....+
T Consensus 34 ~~~~~HGThVAgiiag~-------~~~~p~a~~~~~~~~~~~~~~~~~~i~~~~~~~~gv~VINmS~G~~~~~ 99 (247)
T cd07488 34 NTFDDHATLVASIMGGR-------DGGLPAVNLYSSAFGIKSNNGQWQECLEAQQNGNNVKIINHSYGEGLKR 99 (247)
T ss_pred CCCCCHHHHHHHHHHhc-------cCCCCccceehhhhCCCCCCccHHHHHHHHHhcCCceEEEeCCccCCCC
Confidence 47889999999999996 346699999987775322 343442 678999999999977555
No 52
>KOG1153|consensus
Probab=98.26 E-value=1.5e-06 Score=95.49 Aligned_cols=56 Identities=27% Similarity=0.303 Sum_probs=44.9
Q ss_pred ccCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh------hhH---HHhhc---------cCCceeeecccc
Q psy14141 620 GLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP------KVI---ERYDC---------GGAGDVDTSTVV 681 (698)
Q Consensus 620 ~d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~------~~~---~~i~~---------~Ga~vin~S~g~ 681 (698)
.|++||||||||+|++. -.|||.+++|+.||+.++. .+| +.++. .+.-|.|||+|-
T Consensus 254 ~D~nGHGTH~AG~I~sK------t~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg 327 (501)
T KOG1153|consen 254 EDCNGHGTHVAGLIGSK------TFGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGG 327 (501)
T ss_pred cccCCCcceeeeeeecc------ccccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCC
Confidence 48899999999999987 5899999999999996666 333 33333 367788999984
No 53
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=98.25 E-value=1.1e-06 Score=87.46 Aligned_cols=64 Identities=30% Similarity=0.284 Sum_probs=50.6
Q ss_pred ccCCCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh------hhH---HHhh-ccCCceeeecccccCC
Q psy14141 620 GLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP------KVI---ERYD-CGGAGDVDTSTVVKVD 684 (698)
Q Consensus 620 ~d~~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~------~~~---~~i~-~~Ga~vin~S~g~~~~ 684 (698)
.+..+||||||+++++...+.. ..|+||+++|+++|+.+.. .++ +.+. .++++|||||+|....
T Consensus 41 ~~~~~HGt~va~~i~~~~~~~~-~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~ 114 (241)
T cd00306 41 DDGNGHGTHVAGIIAASANNGG-GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGS 114 (241)
T ss_pred CCCCCcHHHHHHHHhcCCCCCC-CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCC
Confidence 3567999999999999865543 3999999999999996552 233 3444 7899999999997643
No 54
>KOG4266|consensus
Probab=97.88 E-value=2.4e-05 Score=88.63 Aligned_cols=55 Identities=20% Similarity=0.094 Sum_probs=44.0
Q ss_pred CCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh------hh---HHHhhccCCceeeecccc
Q psy14141 623 SSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP------KV---IERYDCGGAGDVDTSTVV 681 (698)
Q Consensus 623 ~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~------~~---~~~i~~~Ga~vin~S~g~ 681 (698)
-||||+|||+||+.. +-.|.||+++|...|+.... +- .+++...-.+|+|+|+|=
T Consensus 238 lgHGTFVAGvia~~~----ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGG 301 (1033)
T KOG4266|consen 238 LGHGTFVAGVIAGRN----ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGG 301 (1033)
T ss_pred cccceeEeeeeccch----hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCC
Confidence 399999999999974 57999999999999995544 33 344466778899999983
No 55
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00021 Score=78.50 Aligned_cols=62 Identities=34% Similarity=0.359 Sum_probs=49.2
Q ss_pred cCCCCcceEEeeeecc-CCCCCCcccccCCceEEEEEeCChh----------hhHHHhhccC--Cceeeeccccc
Q psy14141 621 LCSSHGTHVASIAAAY-FPDEPEKNGVAPGAQIISLCIDGKP----------KVIERYDCGG--AGDVDTSTVVK 682 (698)
Q Consensus 621 d~~~HGThVAgI~Aa~-~~~~~~~~GvAp~a~i~~vk~gd~~----------~~~~~i~~~G--a~vin~S~g~~ 682 (698)
|..+|||||+|++++. ..+.....|++|+++++.+|+.+.. ..+...++.| +++||||+|..
T Consensus 181 d~~~hGt~vag~ia~~~~~~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~ 255 (508)
T COG1404 181 DDNGHGTHVAGTIAAVIFDNGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS 255 (508)
T ss_pred CCCCCcceeeeeeeeecccCCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC
Confidence 5679999999999995 4566679999999999999985532 2333446777 99999999975
No 56
>KOG3526|consensus
Probab=97.26 E-value=0.00042 Score=75.05 Aligned_cols=60 Identities=22% Similarity=0.112 Sum_probs=46.9
Q ss_pred CCCcceEEeeeeccCCCCCCcccccCCceEEEEEeCChh---hhHHHh-h---ccCCceeeeccccc
Q psy14141 623 SSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKP---KVIERY-D---CGGAGDVDTSTVVK 682 (698)
Q Consensus 623 ~~HGThVAgI~Aa~~~~~~~~~GvAp~a~i~~vk~gd~~---~~~~~i-~---~~Ga~vin~S~g~~ 682 (698)
++|||.|||=++|.++++.--.|||-+.++..+|+.|.. .+|++- . -.-..|..-|||..
T Consensus 208 nshgtrcagev~aardngicgvgvaydskvagirmldqpymtdlieansmghep~kihiysaswgpt 274 (629)
T KOG3526|consen 208 NSHGTRCAGEVVAARDNGICGVGVAYDSKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPT 274 (629)
T ss_pred hccCccccceeeeeccCCceeeeeeeccccceeeecCCchhhhhhhhcccCCCCceEEEEecccCcC
Confidence 489999999999988888777889999999999999988 455543 1 12355667888854
No 57
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=97.11 E-value=0.00032 Score=73.79 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=28.6
Q ss_pred CCCCCceeeCCccchhHHHHHHHHHHHHHHHhc
Q psy14141 6 SSNKETQHMNGTSMSAPHATGCVALIISALQQQ 38 (698)
Q Consensus 6 ~~~~~y~~~sGTSMAsP~vAGaaALLlS~~k~~ 38 (698)
.....|..++|||||+|+|||++|||++.++..
T Consensus 239 ~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~ 271 (293)
T cd04842 239 TSDSAYTSKSGTSMATPLVAGAAALLRQYFVDG 271 (293)
T ss_pred CChhheeecCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 445678999999999999999999999888743
No 58
>KOG1153|consensus
Probab=96.39 E-value=0.0017 Score=72.14 Aligned_cols=53 Identities=28% Similarity=0.295 Sum_probs=37.2
Q ss_pred eecCCCCC--CceeeCCccchhHHHHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHhc
Q psy14141 2 FSSSSSNK--ETQHMNGTSMSAPHATGCVALIISALQQQ-----GLSYSPYSIRRALEIT 54 (698)
Q Consensus 2 ~~St~~~~--~y~~~sGTSMAsP~vAGaaALLlS~~k~~-----~~~~tp~~ik~aL~~T 54 (698)
+-|+|... ....++|||||+|||||++|..||+.... +-..+|.++|+.+..-
T Consensus 400 IlSs~iGs~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~ 459 (501)
T KOG1153|consen 400 ILSSWIGSNNATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKF 459 (501)
T ss_pred hhhhhhcCccchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcc
Confidence 34777776 67899999999999999999998765410 1123566666655543
No 59
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0094 Score=65.58 Aligned_cols=69 Identities=28% Similarity=0.358 Sum_probs=52.6
Q ss_pred CCCCCC--ceeeCCccchhHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcccc-CCCCCCCccccccccHHHHH
Q psy14141 5 SSSNKE--TQHMNGTSMSAPHATGCVALIISALQQQGL-SYSPYSIRRALEITAQY-IPSVEPYAQGFGLLQVEKAL 77 (698)
Q Consensus 5 t~~~~~--y~~~sGTSMAsP~vAGaaALLlS~~k~~~~-~~tp~~ik~aL~~TA~~-~~~~~~~~~G~Gli~v~~A~ 77 (698)
+..+.. |..++||||++||++|.+||++ ++++ .+++.+++..+..++.. .........+.|..+...+.
T Consensus 347 ~~~~~~~~~~~~~Gts~a~p~v~g~aal~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (508)
T COG1404 347 TLPGDGADYVTLSGTSMAAPHVSGVAALVL----SANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLANLDAAA 419 (508)
T ss_pred eeeCCccceEeeccccccccHHHHHHHHHH----ccCcccCCHHHHHHHHhhccccccCCccccccccCcccccccc
Confidence 344444 9999999999999999999996 6666 79999999999988873 22335556677766655443
No 60
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=92.52 E-value=0.087 Score=53.41 Aligned_cols=20 Identities=45% Similarity=0.664 Sum_probs=18.7
Q ss_pred ceEEEEeecCcCCCCCCccc
Q psy14141 392 GVVIAIFDSGVDPGAAGLQV 411 (698)
Q Consensus 392 gv~IAIlDTGVDp~apglq~ 411 (698)
||+|||||||||+.||.|.-
T Consensus 1 gV~VaViDsGi~~~h~~l~~ 20 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGN 20 (222)
T ss_pred CCEEEEEeCCCCCCChhhhc
Confidence 79999999999999999983
No 61
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=91.69 E-value=0.15 Score=53.22 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=26.8
Q ss_pred ceEEEEeecCcCCCCCCcccc-CCCCceEEEEEccCCC
Q psy14141 392 GVVIAIFDSGVDPGAAGLQVT-SDGKPKVIERYDCGGA 428 (698)
Q Consensus 392 gv~IAIlDTGVDp~apglq~t-~dG~~Kiid~~D~tg~ 428 (698)
||+|||||||||+.||.|..- ...+.+|+.-+|+...
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~~~~~i~~~~~~~~~ 38 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLFKNLRILGEYDFVDN 38 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccccCCceeeeecCccC
Confidence 799999999999999999310 0123567777777554
No 62
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=91.42 E-value=0.16 Score=55.97 Aligned_cols=29 Identities=34% Similarity=0.323 Sum_probs=24.9
Q ss_pred CCceeeCCccchhHHHHHHHHHHHHHHHh
Q psy14141 9 KETQHMNGTSMSAPHATGCVALIISALQQ 37 (698)
Q Consensus 9 ~~y~~~sGTSMAsP~vAGaaALLlS~~k~ 37 (698)
+.+..+.|||+|||.+||++|||-++...
T Consensus 272 g~~~~~gGTS~aaP~~Ag~~Al~n~~~~~ 300 (361)
T cd04056 272 GQWYLVGGTSAAAPLFAGLIALINQARLA 300 (361)
T ss_pred CeEEeeCCccHHHHHHHHHHHHHHHHhhh
Confidence 56778999999999999999999766653
No 63
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=90.71 E-value=0.07 Score=60.07 Aligned_cols=55 Identities=60% Similarity=0.942 Sum_probs=46.3
Q ss_pred ccccCCceEEEEEeCChhhhHHHhhccCCceeeecccccCCCCCcccCCcCcccC
Q psy14141 644 NGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLK 698 (698)
Q Consensus 644 ~GvAp~a~i~~vk~gd~~~~~~~i~~~Ga~vin~S~g~~~~~~~~~~~~~~~~~~ 698 (698)
.||-|+|-=+.+.....+|+++.++|-|+.-+.||..+.++++++++|++||+||
T Consensus 32 tgvd~~~~~lq~t~~g~~ki~d~~d~t~~gdv~~~~~~~~~~~~~~~~~~g~~~~ 86 (412)
T cd04857 32 TGVDPGAPGLQVTTDGKPKIIDIIDCTGSGDVDTSTVVTPDDGGIIGGLTGRKLK 86 (412)
T ss_pred CCCCCCCCcccccCCCCCeEEEEEeCCCCCCcccceEEecCCCCeEeccCCceec
Confidence 4566666666655555569999999999999999999999999999999999886
No 64
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=88.80 E-value=0.22 Score=52.39 Aligned_cols=19 Identities=42% Similarity=0.807 Sum_probs=17.9
Q ss_pred ceEEEEeecCcCCCCCCcc
Q psy14141 392 GVVIAIFDSGVDPGAAGLQ 410 (698)
Q Consensus 392 gv~IAIlDTGVDp~apglq 410 (698)
.|+|||||||||+.||.|+
T Consensus 1 ~V~VaviDtGi~~~hp~l~ 19 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLK 19 (294)
T ss_pred CcEEEEEeCCCCCCChhHh
Confidence 3899999999999999998
No 65
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=87.62 E-value=0.58 Score=51.65 Aligned_cols=44 Identities=16% Similarity=0.057 Sum_probs=33.3
Q ss_pred CcccccCCceEEEEEeCChh-----h-hHHHhhcc--CCceeeecccccCCC
Q psy14141 642 EKNGVAPGAQIISLCIDGKP-----K-VIERYDCG--GAGDVDTSTVVKVDD 685 (698)
Q Consensus 642 ~~~GvAp~a~i~~vk~gd~~-----~-~~~~i~~~--Ga~vin~S~g~~~~~ 685 (698)
...||||+|+|+.+++.+.. . +..++.+. +++|||||||....+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~ 133 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTVTNGPLLAFLAAVLDNPNLPSVISISYGEPEQS 133 (361)
T ss_pred HHHhccCCCeEEEEEECCcCccHHHHHHHHHHHcCCCCCCEEEccCCccccc
Confidence 46789999999999998763 2 33444443 999999999976443
No 66
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=87.49 E-value=0.29 Score=51.90 Aligned_cols=18 Identities=28% Similarity=0.619 Sum_probs=17.0
Q ss_pred eEEEEeecCcCCCCCCcc
Q psy14141 393 VVIAIFDSGVDPGAAGLQ 410 (698)
Q Consensus 393 v~IAIlDTGVDp~apglq 410 (698)
++|||||||||+.||.|+
T Consensus 1 p~VaviDtGi~~~hp~l~ 18 (291)
T cd04847 1 PIVCVLDSGINRGHPLLA 18 (291)
T ss_pred CEEEEecCCCCCCChhhh
Confidence 589999999999999998
No 67
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=87.02 E-value=0.34 Score=49.65 Aligned_cols=18 Identities=50% Similarity=0.743 Sum_probs=17.2
Q ss_pred eEEEEeecCcCCCCCCcc
Q psy14141 393 VVIAIFDSGVDPGAAGLQ 410 (698)
Q Consensus 393 v~IAIlDTGVDp~apglq 410 (698)
|+|||||||||+.||.|+
T Consensus 1 V~VaviDsGi~~~hp~l~ 18 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLS 18 (242)
T ss_pred CEEEEecCCCCCCChhhc
Confidence 689999999999999998
No 68
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=79.24 E-value=4 Score=37.31 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=36.7
Q ss_pred EEeecCCeEEecccccccCceEEEEEEEeC-CCCCC---cceEEEEEEEcCCCCCCCceEEEEE
Q psy14141 149 SLTCSVPWVQFPNHLELMNISRQFNVKVDP-SSLTP---GVHNGTIFAFDSNKPEKGHVFSVEV 208 (698)
Q Consensus 149 ~L~~t~~wVtvP~~l~l~~~~rtf~V~VDp-t~L~~---G~h~g~I~a~D~~~p~~G~~frIPv 208 (698)
.+......|+|| +++.++|+|++++ .++.+ ..|.|.|...+... .+.++||.
T Consensus 56 ~~~~~~~~vTV~-----ag~s~~v~vti~~p~~~~~~~~~~~eG~I~~~~~~~---~~~lsIPy 111 (112)
T PF06280_consen 56 TVSFSPDTVTVP-----AGQSKTVTVTITPPSGLDASNGPFYEGFITFKSSDG---EPDLSIPY 111 (112)
T ss_dssp EEE---EEEEE------TTEEEEEEEEEE--GGGHHTT-EEEEEEEEEESSTT---SEEEEEEE
T ss_pred eEEeCCCeEEEC-----CCCEEEEEEEEEehhcCCcccCCEEEEEEEEEcCCC---CEEEEeee
Confidence 344446789999 8999999999998 55654 56889888887654 16888885
No 69
>KOG3526|consensus
Probab=73.09 E-value=1.1 Score=49.34 Aligned_cols=79 Identities=25% Similarity=0.337 Sum_probs=53.9
Q ss_pred ceeeCCccchhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccccC-------------CCC---CCCccccccccHH
Q psy14141 11 TQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYI-------------PSV---EPYAQGFGLLQVE 74 (698)
Q Consensus 11 y~~~sGTSMAsP~vAGaaALLlS~~k~~~~~~tp~~ik~aL~~TA~~~-------------~~~---~~~~~G~Gli~v~ 74 (698)
...-+|||-|+|-+||+.||-| +.+|.+|-..+..+-.-|.++- .++ -..-+|+|++++-
T Consensus 378 t~~hsgtsaaapeaagvfalal----eanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldag 453 (629)
T KOG3526|consen 378 TRSHSGTSAAAPEAAGVFALAL----EANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAG 453 (629)
T ss_pred ecccCCccccCccccceeeeee----ccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHH
Confidence 3467999999999999999987 5566777777766554444432 111 2445799999998
Q ss_pred HHHHHHHHhcccccceeEEEEE
Q psy14141 75 KALEWLEKYHAELESKVRFHVT 96 (698)
Q Consensus 75 ~A~~~l~~~~~~~~~~~~~~Vt 96 (698)
.-+.+..+.... +.+|.|+
T Consensus 454 amv~lak~wktv---ppryhc~ 472 (629)
T KOG3526|consen 454 AMVMLAKAWKTV---PPRYHCT 472 (629)
T ss_pred HHHHHHHHhccC---CCceeec
Confidence 777776665432 3455554
No 70
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=71.85 E-value=2.4 Score=41.93 Aligned_cols=17 Identities=47% Similarity=0.886 Sum_probs=15.8
Q ss_pred eEEEEeecCcCCCCCCc
Q psy14141 393 VVIAIFDSGVDPGAAGL 409 (698)
Q Consensus 393 v~IAIlDTGVDp~apgl 409 (698)
|+|||||+|||+.|+.|
T Consensus 1 v~VaiiD~G~~~~~~~~ 17 (241)
T cd00306 1 VTVAVIDTGVDPDHPDL 17 (241)
T ss_pred CEEEEEeCCCCCCCcch
Confidence 68999999999999976
No 71
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=57.27 E-value=27 Score=28.32 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=31.4
Q ss_pred EEEEee-cCCeEEecccccccCceEEEEEEEeCCCCCCcceEEEEEEEcCCCCCCCceEEEEEEE
Q psy14141 147 SLSLTC-SVPWVQFPNHLELMNISRQFNVKVDPSSLTPGVHNGTIFAFDSNKPEKGHVFSVEVTV 210 (698)
Q Consensus 147 ~l~L~~-t~~wVtvP~~l~l~~~~rtf~V~VDpt~L~~G~h~g~I~a~D~~~p~~G~~frIPvTV 210 (698)
+..|.. +..|+.++ .+.. .+.-+.|+||.|.-+|.+.|....+.-...++.++|
T Consensus 11 ~Y~l~g~d~~W~~~~-----~~~~-----~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 11 RYRLEGFDDEWITLG-----SYSN-----SISYTNLPPGKYTLEVRAKDNNGKWSSDEKSLTITI 65 (66)
T ss_dssp EEEEETTESSEEEES-----STS------EEEEES--SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred EEEEECCCCeEEECC-----CCcE-----EEEEEeCCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence 344443 35799887 3332 334456899999999999998765533335555554
No 72
>PF08622 Svf1: Svf1-like; InterPro: IPR013931 This entry represents oxidative stress survival proteins, such as Svf1. The protein Svf1 is required for yeast survival under conditions of oxidative stress, including cold stress []. Cells deficient in Svf1 have increased levels of reactive oxygen species (ROS) under certain conditions. ; GO: 0006979 response to oxidative stress
Probab=27.13 E-value=4.2e+02 Score=29.49 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=35.3
Q ss_pred CceEEEEEecCCCCeEEEEEEeecCCC--ccceEEEEecc-cCCccccceEEEEEEecCCc
Q psy14141 236 NTTKHHFVLVPKEATIAVLKIRSNSLE--AQGKFILHCTQ-HKPKLYMAVEVHKVTLTSPT 293 (698)
Q Consensus 236 g~i~r~Fv~VP~GAt~~~v~l~~~~~~--~~~rf~lh~~Q-l~p~~~~~~e~~~~~~~~~~ 293 (698)
|..+++| .|.+.-.-.|.......+ ...-+++||+| ++|+.--..| +.+.|.++.
T Consensus 127 g~mrH~F--wPR~~v~GtI~~~~~~~~~~g~~~mfv~AlQGMkPhhaA~~W-NF~~Fqs~~ 184 (325)
T PF08622_consen 127 GSMRHVF--WPRCKVEGTITTKGKEIDFKGVPGMFVHALQGMKPHHAASRW-NFLNFQSPT 184 (325)
T ss_pred eEEEEEE--eeccEEEEEEEECCEEEEecCCceeeehhhhCCCcchhhhcc-eeEEecCCC
Confidence 6677777 566666666666443333 32458999999 6897443333 777788754
No 73
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=24.81 E-value=3e+02 Score=25.16 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=23.8
Q ss_pred cCceE--EEEEEEeCCCCCCcceEEEEEEEcCCCCCCCceEEEEEEEEee
Q psy14141 166 MNISR--QFNVKVDPSSLTPGVHNGTIFAFDSNKPEKGHVFSVEVTVVKP 213 (698)
Q Consensus 166 ~~~~r--tf~V~VDpt~L~~G~h~g~I~a~D~~~p~~G~~frIPvTVv~P 213 (698)
+++.+ .|.|++.+..+..+.+--++.+.|... |...+...+++.|
T Consensus 72 ~g~~~~~~v~v~~p~~~~~~~~~~i~f~v~~~~~---~~~~~~~s~F~~P 118 (118)
T PF11614_consen 72 PGETREVPVFVTAPPDALKSGSTPITFTVTDDDG---GEIITYKSTFIGP 118 (118)
T ss_dssp TT-EEEEEEEEEE-GGG-SSSEEEEEEEEEEGGG---TEEEEEEEEEE--
T ss_pred CCCEEEEEEEEEECHHHccCCCeeEEEEEEECCC---CEEEEEEEEEEcC
Confidence 45444 445666666666777766677764322 4556666666654
No 74
>PF09191 CD4-extracel: CD4, extracellular; InterPro: IPR015274 This domain adopts an immunoglobulin-like beta-sandwich with seven strands in 2 beta sheets, in a Greek key topology. It is predominantly found in the extracellular portion of CD4 proteins, where it enables interaction with major histocompatibility complex class II antigens []. ; PDB: 1WIQ_B 1WIP_B 1WIO_A 3T0E_E 1CID_A.
Probab=23.42 E-value=46 Score=30.85 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=35.9
Q ss_pred cceeeee-EEEeccccccceeeeccCCCCCCCCCcccccCCC---------------cccCCccccccccccchhhhhhh
Q psy14141 321 NSSHLSF-LTSHNTLTNQIQLSSSDSTNPTMTSSSSFSITPP---------------IIEFPKWGLLPKKETGVLNVLSK 384 (698)
Q Consensus 321 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~fp~~~l~pk~etg~~~fl~~ 384 (698)
|.+++|| |+|+.+--+---+|.+.-+ +-.-.=++|++.+- .+.+|+.=.| .+.
T Consensus 13 e~vefSFPL~f~dE~L~GEL~Wqaega-sS~q~WitFsl~n~kvsv~~~~~~~Klqm~e~lPL~ltL----------~q~ 81 (108)
T PF09191_consen 13 EQVEFSFPLNFEDENLSGELRWQAEGA-SSSQSWITFSLKNKKVSVQKVTQDPKLQMKEKLPLTLTL----------PQA 81 (108)
T ss_dssp S-EEEE-----SS-SCEEEEEEEESSS-SSS--EEEEEEETTEEEEECEETSST-EE-SCTT-EEEE----------SSB
T ss_pred cEEEEecccccCccccceEEEEEecCC-CCCCCcEEEEEeCCeEEEeecCCCcccccccCCceEEEc----------ccc
Confidence 4788999 9998883355566764322 11112267777771 1123333333 355
Q ss_pred CCCCCCcceEEEEeecC
Q psy14141 385 HPEYDGRGVVIAIFDSG 401 (698)
Q Consensus 385 ~p~~dGrgv~IAIlDTG 401 (698)
.|.|.|.|.+--.||.|
T Consensus 82 l~q~AGSGnltL~L~~G 98 (108)
T PF09191_consen 82 LPQYAGSGNLTLTLDKG 98 (108)
T ss_dssp -GGG-EEEEEEEEBTTS
T ss_pred ChhhcCCceEEEEecCC
Confidence 68999999999999887
No 75
>COG5441 Uncharacterized conserved protein [Function unknown]
Probab=22.52 E-value=2.5e+02 Score=31.03 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=35.7
Q ss_pred chhhhhhhCCCCCCcceEEEEeec-CcCCCCCCccccCCCCceEEEEEccCCCCccC
Q psy14141 377 GVLNVLSKHPEYDGRGVVIAIFDS-GVDPGAAGLQVTSDGKPKVIERYDCGGAGDVD 432 (698)
Q Consensus 377 g~~~fl~~~p~~dGrgv~IAIlDT-GVDp~apglq~t~dG~~Kiid~~D~tg~GdVd 432 (698)
.-.+|++..++.|| +|++=-+ |-+.-.|+++..+=|-||++ +-+--+|||-
T Consensus 81 A~~r~l~sR~dV~g---mig~GGsgGT~lit~~m~~LPlgvPK~m--VST~Asgdv~ 132 (401)
T COG5441 81 AFVRFLSSRGDVAG---MIGMGGSGGTALITPAMRRLPLGVPKVM--VSTLASGDVA 132 (401)
T ss_pred HHHHHhhcccchhh---eeecCCCcchHhhhhHHHhcCcCCccee--eeeeeccCcC
Confidence 34678888876664 3333222 67888999999999999996 4556667763
No 76
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=21.56 E-value=44 Score=36.82 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=19.4
Q ss_pred cCcCCCCCCccccCCCC------ceEEEEEccCC
Q psy14141 400 SGVDPGAAGLQVTSDGK------PKVIERYDCGG 427 (698)
Q Consensus 400 TGVDp~apglq~t~dG~------~Kiid~~D~tg 427 (698)
||.||+.|.|..+.... -+.+|+|.+.+
T Consensus 181 tgLDPAgP~F~~~~~~~rL~~~DA~fVdvIHT~~ 214 (331)
T PF00151_consen 181 TGLDPAGPLFENNPPSERLDKSDAKFVDVIHTNA 214 (331)
T ss_dssp EEES-B-TTTTTS-TTTS--GGGSSEEEEE-SSE
T ss_pred EecCcccccccCCChhHhhhccCCceEEEEEcCC
Confidence 59999999998765432 58999999988
No 77
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.45 E-value=52 Score=41.88 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=22.8
Q ss_pred CceeeCCccchhHHHHHHHHHHHHHHH
Q psy14141 10 ETQHMNGTSMSAPHATGCVALIISALQ 36 (698)
Q Consensus 10 ~y~~~sGTSMAsP~vAGaaALLlS~~k 36 (698)
.....-|||.|+|..||++|++-+++.
T Consensus 472 ~~~~~GGTS~AtPltAGiiAdi~q~~~ 498 (1174)
T COG4934 472 QTYVAGGTSLATPLTAGIIADIEQYIG 498 (1174)
T ss_pred EEEEecccccccchHHHHHHHHHHHhc
Confidence 455677999999999999999977664
Done!