RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14141
(698 letters)
>gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8
family domain in Tripeptidyl aminopeptidases_II.
Tripeptidyl aminopeptidases II are member of the
peptidase S8 or Subtilase family. Subtilases, or
subtilisin-like serine proteases, have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure (an example of convergent evolution).
Tripeptidyl aminopeptidase II removes tripeptides from
the free N terminus of oligopeptides as well as having
endoproteolytic activity. Some tripeptidyl
aminopeptidases have been shown to cleave tripeptides
and small peptides, e.g. angiotensin II and glucagon,
while others are believed to be involved in MHC I
processing.
Length = 412
Score = 204 bits (520), Expect = 6e-59
Identities = 76/107 (71%), Positives = 89/107 (83%)
Query: 369 GLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGA 428
GLLPKKETG L L K+PEYDGRGV+IAI D+GVDPGA GLQVT+DGKPK+I+ DC G+
Sbjct: 1 GLLPKKETGALRFLQKYPEYDGRGVLIAILDTGVDPGAPGLQVTTDGKPKIIDIIDCTGS 60
Query: 429 GDVDTSTVVKVDDTNHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYE 475
GDVDTSTVV DD I GL+GRKLKIP SWKNP+G +H+G+KN Y+
Sbjct: 61 GDVDTSTVVTPDDGGIIGGLTGRKLKIPASWKNPSGKYHVGIKNAYD 107
Score = 183 bits (466), Expect = 3e-51
Identities = 62/114 (54%), Positives = 85/114 (74%), Gaps = 2/114 (1%)
Query: 544 EKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSLTPADQF 603
EKK+ D GP YD VVFH+G++W A +DT+ETGDL +C VL Y R++ + D
Sbjct: 108 EKKYE--DPGPVYDCVVFHDGEHWRAVIDTSETGDLDSCTVLTNYREEREYATFGEQDLL 165
Query: 604 NFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCI 657
N+S+N+Y++GN+L +V +HGTHVA IAAA+FP+EPE+NGVAPGAQI+S+ I
Sbjct: 166 NYSVNIYDDGNLLSIVTDSGAHGTHVAGIAAAHFPEEPERNGVAPGAQIVSIKI 219
Score = 88.1 bits (219), Expect = 2e-18
Identities = 27/46 (58%), Positives = 39/46 (84%)
Query: 11 TQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQ 56
+Q MNGTSMS+P+A G +AL++S L+ +G+ Y+PYS+RRALE TA+
Sbjct: 365 SQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAK 410
Score = 81.6 bits (202), Expect = 2e-16
Identities = 33/54 (61%), Positives = 39/54 (72%)
Query: 645 GVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLK 698
GV PGA + + DGKPK+I+ DC G+GDVDTSTVV DD I GL+GRKLK
Sbjct: 33 GVDPGAPGLQVTTDGKPKIIDIIDCTGSGDVDTSTVVTPDDGGIIGGLTGRKLK 86
>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family. Subtilases are a family
of serine proteases. They appear to have independently
and convergently evolved an Asp/Ser/His catalytic triad,
like that found in the trypsin serine proteases (see
pfam00089). Structure is an alpha/beta fold containing a
7-stranded parallel beta sheet, order 2314567.
Length = 277
Score = 65.1 bits (159), Expect = 1e-11
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEP 63
+GTSM+AP G AL++SA S +P ++R L TA + S+
Sbjct: 206 PGGDLGGYDSHSGTSMAAPLVAGAAALLLSANP----SLTPETLRALLVTTATDLGSMGL 261
Query: 64 -YAQGFGLLQVEKALE 78
+ G+GLL + KA++
Sbjct: 262 DRSFGYGLLNLGKAVK 277
Score = 46.2 bits (110), Expect = 3e-05
Identities = 16/62 (25%), Positives = 24/62 (38%)
Query: 593 DFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQI 652
D + + + + + HGTHVA I AA + GVAP A++
Sbjct: 15 DLSGRYIGLAYRNGYDFVDNDPDPTPDDDNNGHGTHVAGIIAAGDNNGSGGVGVAPNAKL 74
Query: 653 IS 654
S
Sbjct: 75 ES 76
>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain,
uncharacterized subfamily 5. gap in seq This family is
a member of the Peptidases S8 or Subtilases serine endo-
and exo-peptidase clan. They have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The
stability of subtilases may be enhanced by calcium, some
members have been shown to bind up to 4 ions via binding
sites with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 312
Score = 52.2 bits (126), Expect = 3e-07
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPS---------VEPY 64
++GTSM+ P+ G AL+I A + SP +R L TA+ +P + P
Sbjct: 227 LSGTSMATPYVAGAAALLIQARHGKL---SPAELRDLLASTAKPLPWSDGTSALPDLAPV 283
Query: 65 AQ-GFGLLQVEKALE 78
AQ G GL+ KAL
Sbjct: 284 AQQGAGLVNAYKALY 298
Score = 39.9 bits (94), Expect = 0.003
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDT 677
C HGTHVA I AA P+ GVAP A + G +V + C G+ DT
Sbjct: 67 CQGHGTHVAGIIAAN-PNAYGFTGVAPEATL------GAYRV---FGCSGSTTEDT 112
>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in
Streptococcal C5a peptidases. Streptococcal C5a
peptidase (SCP), is a highly specific protease and
adhesin/invasin. The subtilisin-like protease domain is
located at the N-terminus and contains a
protease-associated domain inserted into a loop. There
are three fibronectin type III (Fn) domains at the
C-terminus. SCP binds to integrins with the help of
Arg-Gly-Asp motifs which are thought to stabilize
conformational changes required for substrate binding.
Peptidases S8 or Subtilases are a serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 346
Score = 51.1 bits (123), Expect = 1e-06
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSP---YSIRRALEITAQYIPS 60
S+ ++ +M+GTSM++PH G AL+ L+++ S + + L + P
Sbjct: 261 STVNDNTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPL 320
Query: 61 VEPYA--------QGFGLLQVEKAL 77
QG GL+ V KA+
Sbjct: 321 DSEDTKTYYSPRRQGAGLIDVAKAI 345
Score = 43.8 bits (104), Expect = 2e-04
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 623 SSHGTHVASIAAAYFPDEPEKN----GVAPGAQIISLCIDGKPKVIERYD 668
SSHG HVA I A DE + GVAP AQ++++ + P+ YD
Sbjct: 82 SSHGMHVAGIVAGN-GDEEDNGEGIKGVAPEAQLLAMKVFSNPEGGSTYD 130
Score = 35.7 bits (83), Expect = 0.070
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 388 YDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIE 421
Y G G+V+A+ DSGVDP ++ D K K E
Sbjct: 8 YKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSE 41
>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family
domain in Vpr-like proteins. The maturation of the
peptide antibiotic (lantibiotic) subtilin in Bacillus
subtilis ATCC 6633 includes posttranslational
modifications of the propeptide and proteolytic cleavage
of the leader peptide. Vpr was identified as one of the
proteases, along with WprA, that are capable of
processing subtilin. Asp, Ser, His triadPeptidases S8
or Subtilases are a serine endo- and exo-peptidase clan.
They have an Asp/His/Ser catalytic triad similar to that
found in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. The stability of subtilases may be enhanced by
calcium, some members have been shown to bind up to 4
ions via binding sites with different affinity. Some
members of this clan contain disulfide bonds. These
enzymes can be intra- and extracellular, some function
at extreme temperatures and pH values.
Length = 295
Score = 45.8 bits (109), Expect = 3e-05
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVE-----PYAQGF 68
M+GTSM+APH G AL L+Q +SP I+ AL TA+ + + QG
Sbjct: 232 MSGTSMAAPHVAGAAAL----LKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGA 287
Query: 69 GLLQVEKA 76
G + +A
Sbjct: 288 GRVDALRA 295
Score = 45.4 bits (108), Expect = 6e-05
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDV 675
+ HGTHVA I A + GVAP A + + KV+ G DV
Sbjct: 61 ATGHGTHVAGIIAGNGVNVGTIKGVAPKADLYAY------KVLGPG-GSGTTDV 107
Score = 34.2 bits (79), Expect = 0.17
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 390 GRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGG---------AGDVDTSTVVKVD 440
G+GV +A+ D+G+D L KV YD D
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGD 60
Query: 441 DTNHITGLSG 450
T H T ++G
Sbjct: 61 ATGHGTHVAG 70
>gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family
domain in Subtilisin proteins. This group is composed
of many different subtilisins: Pro-TK-subtilisin,
subtilisin Carlsberg, serine protease Pb92 subtilisin,
and BPN subtilisins just to name a few.
Pro-TK-subtilisin is a serine protease from the
hyperthermophilic archaeon Thermococcus kodakaraensis
and consists of a signal peptide, a propeptide, and a
mature domain. TK-subtilisin is matured from
pro-TK-subtilisin upon autoprocessing and degradation of
the propeptide. Unlike other subtilisins though, the
folding of the unprocessed form of pro-TK-subtilisin is
induced by Ca2+ binding which is almost completed prior
to autoprocessing. Ca2+ is required for activity unlike
the bacterial subtilisins. The propeptide is not
required for folding of the mature domain unlike the
bacterial subtilases because of the stability produced
from Ca2+ binding. Subtilisin Carlsberg is extremely
similar in structure to subtilisin BPN'/Novo thought it
has a 30% difference in amino acid sequence. The
substrate binding regions are also similar and 2
possible Ca2+ binding sites have been identified
recently. Subtilisin Carlsberg possesses the highest
commercial importance as a proteolytic additive for
detergents. Serine protease Pb92, the serine protease
from the alkalophilic Bacillus strain PB92, also
contains two calcium ions and the overall folding of
the polypeptide chain closely resembles that of the
subtilisins. Members of the peptidases S8 and S35 clan
include endopeptidases, exopeptidases and also a
tripeptidyl-peptidase. The S8 family has an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The S53
family contains a catalytic triad Glu/Asp/Ser. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. Some members of
this clan contain disulfide bonds. These enzymes can be
intra- and extracellular, some function at extreme
temperatures and pH values.
Length = 229
Score = 45.2 bits (108), Expect = 4e-05
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEIT 54
++GTSM+ PH G AL+ S + +R+AL T
Sbjct: 193 LSGTSMATPHVAGVAALVWSK----RPELTNAQVRQALNKT 229
Score = 37.5 bits (88), Expect = 0.011
Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 21/60 (35%)
Query: 625 HGTHVASIAAAYFPDEPEKNGVAPGAQI--------------------ISLCIDGKPKVI 664
HGTHVA I AA + GVAP A + I I+ +I
Sbjct: 42 HGTHVAGIIAAL-DNGVGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDII 100
>gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease,
Peptidase S8 family domain in Thiazoline
oxidase/subtilisin-like proteases. Thiazoline
oxidase/subtilisin-like protease is produced by the
symbiotic bacteria Prochloron spp. that inhabit didemnid
family ascidians. The cyclic peptides of the
patellamide class found in didemnid extracts are now
known to be synthesized by the Prochloron spp. The
prepatellamide is heterocyclized to form thiazole and
oxazoline rings and the peptide is cleaved to form the
two cyclic patellamides A and C. Subtilases, or
subtilisin-like serine proteases, have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure (an example of convergent evolution).
Length = 267
Score = 45.0 bits (107), Expect = 5e-05
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 10 ETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
E +GTS +A G AL++S ++G P ++RRAL TA
Sbjct: 204 EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETA 249
>gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family
domain in BacillopeptidaseF-like proteins. Bacillus
subtilis produces and secretes proteases and other types
of exoenzymes at the end of the exponential phase of
growth. The ones that make up this group is known as
bacillopeptidase F, encoded by bpr, a serine protease
with high esterolytic activity which is inhibited by
PMSF. Like other members of the peptidases S8 family
these have a Asp/His/Ser catalytic triad similar to that
found in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. The stability of these enzymes may be enhanced
by calcium, some members have been shown to bind up to 4
ions via binding sites with different affinity.
Length = 264
Score = 44.7 bits (106), Expect = 8e-05
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQ 56
S+ +GTSM+APH G AL+ SA L + L TA+
Sbjct: 214 SAVPGGGYGSSSGTSMAAPHVAGVAALLWSA--NPSLIGDVDATEAILTETAR 264
Score = 30.4 bits (69), Expect = 3.1
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 623 SSHGTHVASIAAAYFPDEPEKNGVAPGAQII 653
+ HGTH D + GVAPGA+ I
Sbjct: 52 NGHGTHTMGTMVGNDGDGQQI-GVAPGARWI 81
>gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53
families. Members of the peptidases S8 (subtilisin and
kexin) and S53 (sedolisin) family include endopeptidases
and exopeptidases. The S8 family has an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. Serine acts
as a nucleophile, aspartate as an electrophile, and
histidine as a base. The S53 family contains a catalytic
triad Glu/Asp/Ser with an additional acidic residue Asp
in the oxyanion hole, similar to that of subtilisin.
The serine residue here is the nucleophilic equivalent
of the serine residue in the S8 family, while glutamic
acid has the same role here as the histidine base.
However, the aspartic acid residue that acts as an
electrophile is quite different. In S53, it follows
glutamic acid, while in S8 it precedes histidine. The
stability of these enzymes may be enhanced by calcium;
some members have been shown to bind up to 4 ions via
binding sites with different affinity. There is a great
diversity in the characteristics of their members: some
contain disulfide bonds, some are intracellular while
others are extracellular, some function at extreme
temperatures, and others at high or low pH values.
Length = 241
Score = 44.1 bits (104), Expect = 1e-04
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEIT 54
++GTSM+AP G AL++SA +P ++ AL T
Sbjct: 205 LSGTSMAAPIVAGVAALLLSANPDL----TPAQVKAALLST 241
Score = 41.8 bits (98), Expect = 5e-04
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 606 SINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISL 655
+ + N + HGTHVA I AA + GVAPGA++I +
Sbjct: 27 GNDDDDNENGPTDPDDGNGHGTHVAGIIAAS-ANNGGGVGVAPGAKLIPV 75
Score = 30.6 bits (69), Expect = 2.3
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 393 VVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTN----HITGL 448
V +A+ D+GVDP + D G D + + DD N H+ G+
Sbjct: 1 VTVAVIDTGVDP-------DHPDLDGLFGGGDGGNDDDDNENGPTDPDDGNGHGTHVAGI 53
>gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family
domain in Fervidolysin. Fervidolysin found in
Fervidobacterium pennivorans is an extracellular
subtilisin-like keratinase. It is contains a signal
peptide, a propeptide, and a catalytic region. The
tertiary structure of fervidolysin is similar to that of
subtilisin. It contains a Asp/His/Ser catalytic triad
and is a member of the peptidase S8 (subtilisin and
kexin) family. The catalytic triad is similar to that
found in trypsin-like proteases, but it does not share
their three-dimensional structure and are not homologous
to trypsin. Serine acts as a nucleophile, aspartate as
an electrophile, and histidine as a base. The S53 family
contains a catalytic triad Glu/Asp/Ser with an
additional acidic residue Asp in the oxyanion hole,
similar to that of subtilisin. The serine residue here
is the nucleophilic equivalent of the serine residue in
the S8 family, while glutamic acid has the same role
here as the histidine base. However, the aspartic acid
residue that acts as an electrophile is quite different.
In S53, it follows glutamic acid, while in S8 it
precedes histidine. The stability of these enzymes may
be enhanced by calcium; some members have been shown to
bind up to 4 ions via binding sites with different
affinity. There is a great diversity in the
characteristics of their members: some contain disulfide
bonds, some are intracellular while others are
extracellular, some function at extreme temperatures,
and others at high or low pH values.
Length = 273
Score = 44.0 bits (104), Expect = 1e-04
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 12 QHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEIT 54
++++GTSM+APH +G AL++S ++P IR+ LE +
Sbjct: 234 EYLSGTSMAAPHVSGVAALVLSKFPD---VFTPEQIRKLLEES 273
Score = 29.4 bits (66), Expect = 5.9
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 623 SSHGTHVASIAAAY------FPDEPEKNGVAPGAQIISLCI 657
HGTHVA AA GVAPG +I+S+ I
Sbjct: 61 GGHGTHVAGTIAAVNNNGGGVGGIAGAGGVAPGVKIMSIQI 101
>gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family
domain in ProteinaseK-like proteins. The peptidase S8
or Subtilase clan of proteases have a Asp/His/Ser
catalytic triad that is not homologous to trypsin. This
CD contains several members of this clan including:
PCSK9 (Proprotein convertase subtilisin/kexin type 9),
Proteinase_K, Proteinase_T, and other subtilisin-like
serine proteases. PCSK9 posttranslationally regulates
hepatic low-density lipoprotein receptors (LDLRs) by
binding to LDLRs on the cell surface, leading to their
degradation. The binding site of PCSK9 has been
localized to the epidermal growth factor-like repeat A
(EGF-A) domain of the LDLR. Characterized Proteinases K
are secreted endopeptidases with a high degree of
sequence conservation. Proteinases K are not
substrate-specific and function in a wide variety of
species in different pathways. It can hydrolyze keratin
and other proteins with subtilisin-like specificity. The
number of calcium-binding motifs found in these differ.
Proteinase T is a novel proteinase from the fungus
Tritirachium album Limber. The amino acid sequence of
proteinase T as deduced from the nucleotide sequence is
about 56% identical to that of proteinase K.
Length = 255
Score = 43.7 bits (104), Expect = 1e-04
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRAL 51
+ S+ T ++GTSM+APH G A ++S G SP ++ L
Sbjct: 205 AWIGSDTATATLSGTSMAAPHVAGLAAYLLS----LGPDLSPAEVKARL 249
Score = 42.5 bits (101), Expect = 3e-04
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 17/61 (27%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVV 681
C+ HGTHVA + GVA A ++++ KV+ DC G+G S ++
Sbjct: 62 CNGHGTHVAGTVGG------KTYGVAKKANLVAV------KVL---DCNGSG--TLSGII 104
Query: 682 K 682
Sbjct: 105 A 105
>gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain,
uncharacterized subfamily 1. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 264
Score = 43.7 bits (104), Expect = 1e-04
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
Query: 623 SSHGTHVASIAAAYFPD-EPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVV 681
+ HGTHVA I A + GVAPGA ++ + KV++ G+G S ++
Sbjct: 44 NGHGTHVAGIIAGSGRASNGKYKGVAPGANLVGV------KVLDDS---GSGSE--SDII 92
Query: 682 K 682
Sbjct: 93 A 93
Score = 40.3 bits (95), Expect = 0.002
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQ 56
M+GTSM+ PH +G +AL+ LQ +P ++ L TA
Sbjct: 226 MSGTSMATPHVSGAIALL---LQANP-ILTPDEVKCILRDTAT 264
>gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family.
Members of the peptidase S53 (sedolisin) family include
endopeptidases and exopeptidases. The S53 family
contains a catalytic triad Glu/Asp/Ser with an
additional acidic residue Asp in the oxyanion hole,
similar to that of Asn in subtilisin. The stability of
these enzymes may be enhanced by calcium, some members
have been shown to bind up to 4 ions via binding sites
with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values. Characterized sedolisins include Kumamolisin,
an extracellular calcium-dependent thermostable
endopeptidase from Bacillus. The enzyme is synthesized
with a 188 amino acid N-terminal preprotein region which
is cleaved after the extraction into the extracellular
space with low pH. One kumamolysin paralog,
kumamolisin-As, is believed to be a collagenase. TPP1 is
a serine protease that functions as a tripeptidyl
exopeptidase as well as an endopeptidase. Less is known
about PSCP from Pseudomonas which is thought to be an
aspartic proteinase.
Length = 275
Score = 43.8 bits (104), Expect = 2e-04
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 16 GTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPY---AQGFGLLQ 72
GTS +APHA G AL++SA +P IR AL TA + EP A G GL+
Sbjct: 215 GTSAAAPHAAGVAALVLSA----NPGLTPADIRDALRSTALDMG--EPGYDNASGSGLVD 268
Query: 73 VEKALE 78
++A+
Sbjct: 269 ADRAVA 274
>gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in
CspA-like proteins. GSP (germination-specific protease)
converts the spore peptidoglycan hydrolase (SleC)
precursor to an active enzyme during germination of
Clostridium perfringens S40 spores. Analysis of an
enzyme fraction of GSP showed that it was composed of a
gene cluster containing the processed forms of products
of cspA, cspB, and cspC which are positioned in a tandem
array just upstream of the 5' end of sleC. The amino
acid sequences deduced from the nucleotide sequences of
the csp genes showed significant similarity and showed a
high degree of homology with those of the catalytic
domain and the oxyanion binding region of
subtilisin-like serine proteases. Members of the
peptidases S8 and S35 clan include endopeptidases,
exopeptidases and also a tripeptidyl-peptidase. The S8
family has an Asp/His/Ser catalytic triad similar to
that found in trypsin-like proteases, but do not share
their three-dimensional structure and are not homologous
to trypsin. The S53 family contains a catalytic triad
Glu/Asp/Ser. The stability of these enzymes may be
enhanced by calcium, some members have been shown to
bind up to 4 ions via binding sites with different
affinity. Some members of this clan contain disulfide
bonds. These enzymes can be intra- and extracellular,
some function at extreme temperatures and pH values.
Length = 455
Score = 43.8 bits (104), Expect = 2e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 623 SSHGTHVASIAAAYFPDEPEKNGVAPGAQII 653
+ HGTHVA IAA + P+ GVAP A++I
Sbjct: 78 NGHGTHVAGIAAGNGDNNPDFKGVAPEAELI 108
Score = 40.3 bits (95), Expect = 0.003
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALI 31
++S +GTS++A G AL+
Sbjct: 386 TASPGGGYTTRSGTSVAAAIVAGACALL 413
Score = 31.0 bits (71), Expect = 2.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 388 YDGRGVVIAIFDSGVD 403
G+GV++ I D+G+D
Sbjct: 1 LTGKGVLVGIIDTGID 16
>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain
in Subtilisin-like proteins. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 259
Score = 42.2 bits (100), Expect = 5e-04
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRAL 51
S+S +M+GTSM+ PH G AL++S + + I+ A+
Sbjct: 211 STSPGGGYGYMSGTSMATPHVAGAAALLLSLNP----NLTAAQIKDAI 254
Score = 37.2 bits (87), Expect = 0.021
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 23/65 (35%)
Query: 624 SHGTHVASIAAAYFPDEPEKN------GVAPGAQIISLCIDGKPKVIERYDCGGAGDVDT 677
HGTHVA I A N GVA +I+ L K + G G T
Sbjct: 64 GHGTHVAGIIGA------VGNNGIGIAGVAWNVKIMPL------KFL-----GADGSGTT 106
Query: 678 STVVK 682
S +K
Sbjct: 107 SDAIK 111
>gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain,
uncharacterized subfamily 14. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 311
Score = 41.7 bits (98), Expect = 8e-04
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 16 GTSMSAPHATGCVALIISALQQQ--GLSYSPYSIRRALEITA 55
GTSM+ P G AL+ISAL+++ Y P+ +R L TA
Sbjct: 270 GTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
Score = 32.1 bits (73), Expect = 0.94
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 390 GRGVVIAIFDSGVDPGAAGL 409
G GVVIAI D+GVD L
Sbjct: 1 GEGVVIAIVDTGVDYSHPDL 20
>gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like,
Peptidase S8 family domain in Autotransporter serine
proteases. Autotransporter serine proteases belong to
Peptidase S8 or Subtilase family. Subtilases, or
subtilisin-like serine proteases, have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure (an example of convergent evolution).
Autotransporters are a superfamily of outer
membrane/secreted proteins of gram-negative bacteria.
The presence of these subtilisin-like domains in these
autotransporters are may enable them to be
auto-catalytic and may also serve to allow them to act
as a maturation protease cleaving other outer membrane
proteins at the cell surface.
Length = 267
Score = 41.5 bits (98), Expect = 9e-04
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 603 FNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISL 655
S V G SHGTHVA + AA +GVAP A + S
Sbjct: 26 SEASYYVAVNDAGYASNGDGDSHGTHVAGVIAAARDGGGM-HGVAPDATLYSA 77
Score = 37.3 bits (87), Expect = 0.020
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 13 HMNGTSMSAPHATGCVALIISA 34
++GTS +APH +G AL+
Sbjct: 228 RVSGTSFAAPHVSGAAALLAQK 249
Score = 30.4 bits (69), Expect = 2.9
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 389 DGRGVVIAIFDSGVDPGAAGLQ 410
G GV + + DSG+D
Sbjct: 1 TGAGVKVGVIDSGIDLSHPEFA 22
>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain,
uncharacterized subfamily 3. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 307
Score = 41.0 bits (97), Expect = 0.001
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
++GTSM++PH G AL+ SA +SP +I+ AL TA
Sbjct: 269 ISGTSMASPHVAGVAALLKSAHP----DWSPAAIKSALMTTA 306
Score = 33.3 bits (77), Expect = 0.39
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 625 HGTHVASIAA-AYFPDEPEKN-------GVAPGAQIIS 654
HGTH AS AA + GVAP A+I
Sbjct: 110 HGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAV 147
Score = 29.1 bits (66), Expect = 7.0
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 385 HPEYDGRGVVIAIFDSGVDP 404
G G++I + D+G+ P
Sbjct: 24 GAANAGEGIIIGVLDTGIWP 43
>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine
protease mycosin. Members of this family are
subtilisin-related serine proteases, found strictly in
the Actinobacteria and associated with type VII
secretion operons. The designation mycosin is used for
members from Mycobacterium [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair].
Length = 350
Score = 41.2 bits (97), Expect = 0.001
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 622 CSSHGTHVASIAAAYFPDEPEK-NGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTV 680
C HGT VA I A P E + +GVAP A+I+ + D G +G D T+
Sbjct: 50 CDGHGTLVAGIIAGR-PGEGDGFSGVAPDARILPIRQ---TSAAFEPDEGTSGVGDLGTL 105
Query: 681 VK 682
K
Sbjct: 106 AK 107
Score = 31.5 bits (72), Expect = 1.3
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEP-YAQGFGLLQV 73
+GTS +AP +G AL+ S + +RR +E TA + G+G++
Sbjct: 223 SGTSFAAPFVSGTAALVRSRFPD----LTAAQVRRRIEATADHPARGGRDDYVGYGVVDP 278
Query: 74 EKALEW 79
AL
Sbjct: 279 VAALTG 284
>gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease,
PatA/PatG family. This model describes a protease
domain associated with the maturation of various members
of the cyanobactin family of ribosomally produced,
heavily modified bioactive metabolites. Members include
the PatA protein and C-terminal domain of the PatG
protein of Prochloron didemni, TenA and a region of TenG
from Nostoc spongiaeforme var. tenue, etc.
Length = 602
Score = 41.2 bits (97), Expect = 0.002
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 10 ETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
ET ++GTS + P TG AL++S QQG + P ++R AL +A
Sbjct: 153 ETVRLSGTSFATPVVTGVAALLLSLQLQQGETPDPQAVRTALLNSA 198
>gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain,
uncharacterized subfamily 12. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 297
Score = 40.4 bits (95), Expect = 0.002
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRAL--EITAQYIPSVEPYAQGFGLL 71
M+GTSM+ PH G AL AL + G ++ L T Q+ P ++ +G GL
Sbjct: 234 MSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVGLG 293
Query: 72 QV 73
Sbjct: 294 LA 295
Score = 32.0 bits (73), Expect = 0.97
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 386 PEYDGRGVVIAIFDSGVDPG 405
+ G GV +A+ D+G+D
Sbjct: 3 SPFTGAGVRVAVLDTGIDLT 22
>gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain
in Thermitase-like proteins. Thermitase is a
non-specific, trypsin-related serine protease with a
very high specific activity. It contains a subtilisin
like domain. The tertiary structure of thermitase is
similar to that of subtilisin BPN'. It contains a
Asp/His/Ser catalytic triad. Members of the peptidases
S8 (subtilisin and kexin) and S53 (sedolisin) clan
include endopeptidases and exopeptidases. The S8 family
has an Asp/His/Ser catalytic triad similar to that found
in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. Serine acts as a nucleophile, aspartate as an
electrophile, and histidine as a base. The S53 family
contains a catalytic triad Glu/Asp/Ser with an
additional acidic residue Asp in the oxyanion hole,
similar to that of subtilisin. The serine residue here
is the nucleophilic equivalent of the serine residue in
the S8 family, while glutamic acid has the same role
here as the histidine base. However, the aspartic
acid residue that acts as an electrophile is quite
different. In S53 the it follows glutamic acid, while
in S8 it precedes histidine. The stability of these
enzymes may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. There is a great diversity in the
characteristics of their members: some contain disulfide
bonds, some are intracellular while others are
extracellular, some function at extreme temperatures,
and others at high or low pH values.
Length = 260
Score = 39.6 bits (93), Expect = 0.003
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYI 58
M+GTSM+ PH G AL+ S QG S +R AL+ TA I
Sbjct: 220 MSGTSMATPHVAGVAALLYS----QG-PLSASEVRDALKKTADDI 259
Score = 35.7 bits (83), Expect = 0.063
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 624 SHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDV 675
HGTHVA I AA + GVAP A+I+ + KV++ G D+
Sbjct: 69 GHGTHVAGIIAAATNNGTGVAGVAPKAKIMPV------KVLDANGSGSLADI 114
Score = 31.5 bits (72), Expect = 1.2
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 389 DGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGL 448
G GV +A+ D+GVDP L K K + YD D D DD H T +
Sbjct: 26 GGSGVTVAVVDTGVDPTHPDL-----LKVKFVLGYDFVD-NDSDAM-----DDNGHGTHV 74
Query: 449 SG 450
+G
Sbjct: 75 AG 76
>gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain,
uncharacterized subfamily 6. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 254
Score = 39.5 bits (92), Expect = 0.004
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
++GTSM+APH G AL L SP I+ AL TA
Sbjct: 216 LSGTSMAAPHVAGVAAL----LAAAHPDLSPEQIKDALTETA 253
>gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in
Kp43 proteases. Kp43 proteases are members of the
peptidase S8 or Subtilase clan of proteases. They have
an Asp/His/Ser catalytic triad similar to that found in
trypsin-like proteases, but do not share their
three-dimensional structure (an example of convergent
evolution). Kp43 is topologically similar to kexin and
furin both of which are proprotein convertases, but
differ in amino acids sequence and the position of its
C-terminal barrel. Kp43 has 3 Ca2+ binding sites that
differ from the corresponding sites in the other known
subtilisin-like proteases. KP-43 protease is known to
be an oxidation-resistant protease when compared with
the other subtilisin-like proteases.
Length = 293
Score = 38.1 bits (89), Expect = 0.011
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 625 HGTHVASIAAAYFPDEPEK---NGVAPGAQIIS 654
HGTHVA I A D GVAP A++
Sbjct: 56 HGTHVAGIIAGKGNDSSSISLYKGVAPKAKLYF 88
Score = 37.7 bits (88), Expect = 0.013
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQG 39
+S+ +GTSM+ P G AL+
Sbjct: 236 IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGY 272
Score = 29.6 bits (67), Expect = 5.3
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 388 YDGRGVVIAIFDSGVDPG-----AAGLQVTSDGKPKVIERYDCGGAGDVDT 433
G+G ++ + D+G+D T+ K++ D
Sbjct: 4 LTGKGQIVGVADTGLDTNHCFFYDPNFNKTNLFHRKIVRYDSLSDTKDDVD 54
>gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain,
uncharacterized subfamily 13. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 285
Score = 37.3 bits (87), Expect = 0.020
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 14 MNGTSMSAPHATGCVALIISA 34
+ GTSM+APH G AL+ S
Sbjct: 249 LQGTSMAAPHVAGVAALMKSV 269
Score = 31.9 bits (73), Expect = 1.1
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 20/56 (35%)
Query: 623 SSHGTHVASIAAAYFPDEPEKN------GVAPGAQIISLCIDGKPKVIERYDCGGA 672
S HGTHVA AA N GVA GA+I+ + + GK CGG
Sbjct: 71 SWHGTHVAGTIAA------VTNNGVGVAGVAWGARILPVRVLGK--------CGGT 112
>gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like,
Peptidase S8 family domain in Protein convertases.
Protein convertases, whose members include furins and
kexins, are members of the peptidase S8 or Subtilase
clan of proteases. They have an Asp/His/Ser catalytic
triad that is not homologous to trypsin. Kexins are
involved in the activation of peptide hormones, growth
factors, and viral proteins. Furin cleaves cell surface
vasoactive peptides and proteins involved in
cardiovascular tissue remodeling in the TGN, at cell
surface, or in endosomes but rarely in the ER. Furin
also plays a key role in blood pressure regulation
though the activation of transforming growth factor
(TGF)-beta. High specificity is seen for cleavage after
dibasic (Lys-Arg or Arg-Arg) or multiple basic residues
in protein convertases. There is also strong sequence
conservation.
Length = 297
Score = 36.4 bits (85), Expect = 0.036
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 11 TQHMNGTSMSAPHATGCVALIISA 34
T NGTS +AP A G +AL++ A
Sbjct: 256 TSSHNGTSAAAPLAAGVIALMLEA 279
Score = 31.0 bits (71), Expect = 1.9
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 379 LNVLSKHPE-YDGRGVVIAIFDSGVD 403
LNV + G+GV +A+ D G++
Sbjct: 26 LNVTPAWEQGITGKGVTVAVVDDGLE 51
Score = 30.6 bits (70), Expect = 2.6
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 14/61 (22%)
Query: 623 SSHGTHVASIAAAYFPDEPEKN------GVAPGAQIISLCIDGKPK--VIERYDCGGAGD 674
+SHGT A AA N GVAPGA++ + + V+E G D
Sbjct: 84 NSHGTRCAGEIAA------VGNNGICGVGVAPGAKLGGIRMLDGDVTDVVEAESLGLNPD 137
Query: 675 V 675
Sbjct: 138 Y 138
>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein. The sequences
featured in this family are similar to a region of human
TPR protein and to yeast myosin-like proteins 1 (MLP1)
and 2 (MLP2). These proteins share a number of features;
for example, they all have coiled-coil regions and all
three are associated with nuclear pores. TPR is thought
to be a component of nuclear pore complex- attached
intra-nuclear filaments, and is implicated in nuclear
protein import. Moreover, its N-terminal region is
involved in the activation of oncogenic kinases,
possibly by mediating the dimerisation of kinase domains
or by targeting these kinases to the nuclear pore
complex. MLP1 and MLP2 are involved in the process of
telomere length regulation, where they are thought to
interact with proteins such as Tel1p and modulate their
activity.
Length = 132
Score = 34.2 bits (79), Expect = 0.067
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 15/79 (18%)
Query: 471 KNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHA-DAKNLSRENKLL 529
K E + LQE ++++ A EAQ+ + + KHA D + L L
Sbjct: 19 KEDAEEKIQKLQEDLEEQ---------AEIAN-EAQQKYERELVKHAEDIEELQA----L 64
Query: 530 KEELESMVESLNNLEKKFN 548
+++L + + + L+ +
Sbjct: 65 RKQLNELKKEIAQLKAEAE 83
>gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 508
Score = 35.3 bits (80), Expect = 0.12
Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 10/140 (7%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA-QYIPSVEPYAQGFGLLQ 72
++GTSM+APH +G AL++SA +P +R + TA S G GL
Sbjct: 358 LSGTSMAAPHVSGVAALVLSANPN---ELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLAN 414
Query: 73 VEKALEWLEKYHAELESKVRFHVTCAGSSSKNKGIHLRVGDQQVPKEVNVSVEPVFADSD 132
++ A + + T + + L + + V +V +
Sbjct: 415 LDAA------ATDVAGGTLPANGTGSSQGAVEAPGTLALLTPALGGTVPAAVAVAGTVTV 468
Query: 133 NIVFDPEIKYNFQMSLSLTC 152
+ I S
Sbjct: 469 GLGTAGTIALAALGGASAAL 488
Score = 30.7 bits (68), Expect = 3.0
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 624 SHGTHVAS-IAAAYFPDEPEKNGVAPGAQIIS 654
HGTHVA IAA F + GVAPGA+++
Sbjct: 184 GHGTHVAGTIAAVIFDNGAGVAGVAPGAKLLL 215
>gnl|CDD|202716 pfam03646, FlaG, FlaG protein. Although important for flagella the
exact function of this protein is unknown.
Length = 107
Score = 33.0 bits (76), Expect = 0.12
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 501 AQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLEKKFNCH 550
A + + + E ++ KEELE VE LN + N +
Sbjct: 7 QTAAEKVVSAAQAVAEEAEETAAEEKEVSKEELEEAVEKLNKFLQSLNTN 56
>gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in
SKI-1-like proteins. SKI-1 (type I membrane-bound
subtilisin-kexin-isoenzyme) proteins are secretory
Ca2+-dependent serine proteinases cleave at nonbasic
residues: Thr, Leu, and Lys. SKI-1s play a critical
role in the regulation of the synthesis and metabolism
of cholesterol and fatty acid metabolism. Members of
the peptidases S8 and S35 clan include endopeptidases,
exopeptidases and also a tripeptidyl-peptidase. The S8
family has an Asp/His/Ser catalytic triad similar to
that found in trypsin-like proteases, but do not share
their three-dimensional structure and are not homologous
to trypsin. The S53 family contains a catalytic triad
Glu/Asp/Ser. The stability of these enzymes may be
enhanced by calcium, some members have been shown to
bind up to 4 ions via binding sites with different
affinity. Some members of this clan contain disulfide
bonds. These enzymes can be intra- and extracellular,
some function at extreme temperatures and pH values.
Length = 255
Score = 34.4 bits (79), Expect = 0.14
Identities = 15/47 (31%), Positives = 31/47 (65%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPS 60
++GTS+++P G VAL++S + ++ +P S+++AL +A +P
Sbjct: 209 LSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLPG 255
>gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain,
uncharacterized subfamily 8. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 222
Score = 33.5 bits (77), Expect = 0.23
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 15 NGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
+G S +APH TG VAL++S ++R L+ A
Sbjct: 185 SGNSFAAPHVTGMVALLLSE----KPDIDANDLKRLLQRLA 221
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 33.7 bits (78), Expect = 0.26
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 482 QERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELE 534
ERIQ+E + + + + E QK L+ I + + + +E + +E E
Sbjct: 105 IERIQEEDEAE------AQEKREKQKKLREEIDEFNEERIERKEEEKEREREE 151
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 33.0 bits (76), Expect = 0.36
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 20/87 (22%)
Query: 479 KLLQERIQKERKEKLWDPSHRKAQAEA---QKNLQNFIQ-----KHADA---------KN 521
KL+ E I +E K +L +P KA+ E +K L+++ + K+ A KN
Sbjct: 48 KLMAE-IAQENK-RLVEPLK-KAEEEVEELRKKLKDYEKDKQSLKNLKARLKELEKELKN 104
Query: 522 LSRENKLLKEELESMVESLNNLEKKFN 548
L E+++L++ E + + L KF
Sbjct: 105 LKWESEVLEQRFEKVERERDELYDKFE 131
>gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8
family domain in Lantiobiotic (lanthionine-containing
antibiotics) specific proteases. Lantiobiotic
(lanthionine-containing antibiotics) specific proteases
are very similar in structure to serine proteases.
Lantibiotics are ribosomally synthesised antimicrobial
agents derived from ribosomally synthesised peptides
with antimicrobial activities against Gram-positive
bacteria. The proteases that cleave the N-terminal
leader peptides from lantiobiotics include: epiP, nsuP,
mutP, and nisP. EpiP, from Staphylococcus, is thought
to cleave matured epidermin. NsuP, a dehydratase from
Streptococcus and NisP, a membrane-anchored
subtilisin-like serine protease from Lactococcus cleave
nisin. MutP is highly similar to epiP and nisP and is
thought to process the prepeptide mutacin III of S.
mutans. Members of the peptidases S8 (subtilisin and
kexin) and S53 (sedolisin) clan include endopeptidases
and exopeptidases. The S8 family has an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. Serine acts
as a nucleophile, aspartate as an electrophile, and
histidine as a base. The S53 family contains a catalytic
triad Glu/Asp/Ser with an additional acidic residue Asp
in the oxyanion hole, similar to that of subtilisin.
The serine residue here is the nucleophilic equivalent
of the serine residue in the S8 family, while glutamic
acid has the same role here as the histidine base.
However, the aspartic acid residue that acts as an
electrophile is quite different. In S53 the it follows
glutamic acid, while in S8 it precedes histidine. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. There is a great
diversity in the characteristics of their members: some
contain disulfide bonds, some are intracellular while
others are extracellular, some function at extreme
temperatures, and others at high or low pH values.
Length = 294
Score = 33.1 bits (76), Expect = 0.39
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 14 MNGTSMSAPHATGCVALIIS 33
M GTS++AP +G +ALII
Sbjct: 257 MYGTSLAAPKVSGALALIID 276
>gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family
domain in Subtilisin_Novo-like proteins. Subtilisins
are a group of alkaline proteinases originating from
different strains of Bacillus subtilis. Novo is one of
the strains that produced enzymes belonging to this
group. The enzymes obtained from the Novo and BPN'
strains are identical. The Carlsburg and Novo
subtilisins are thought to have arisen from a common
ancestral protein. They have similar peptidase and
esterase activities, pH profiles, catalyze
transesterification reactions, and are both inhibited by
diispropyl fluorophosphate, though they differ in 85
positions in the amino acid sequence. Members of the
peptidases S8 and S35 clan include endopeptidases,
exopeptidases and also a tripeptidyl-peptidase. The S8
family has an Asp/His/Ser catalytic triad similar to
that found in trypsin-like proteases, but do not share
their three-dimensional structure and are not homologous
to trypsin. The S53 family contains a catalytic triad
Glu/Asp/Ser with an additional acidic residue Asp in the
oxyanion hole, similar to that of subtilisin.. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. Some members of
this clan contain disulfide bonds. These enzymes can be
intra- and extracellular, some function at extreme
temperatures and pH values.
Length = 291
Score = 33.1 bits (76), Expect = 0.47
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 624 SHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCI 657
HGTHVA I AA + +GVA +I+ L I
Sbjct: 86 DHGTHVAGIIAAVRDNGIGIDGVADNVKIMPLRI 119
>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like. This family is a set
of eukaryotic tropomyosins. Within the yeast Tmp1 and
Tmp2, biochemical and sequence analyses indicate that
Tpm2p spans four actin monomers along a filament,
whereas Tpmlp spans five. Despite its shorter length,
Tpm2p can compete with Tpm1p for binding to F-actin.
Over-expression of Tpm2p in vivo alters the axial
budding of haploids to a bipolar pattern, and this can
be partially suppressed by co-over-expression of Tpm1p.
This suggests distinct functions for the two
tropomyosins, and indicates that the ratio between them
is important for correct morphogenesis. The family also
contains higher eukaryote Tmp3 members.
Length = 143
Score = 31.4 bits (72), Expect = 0.64
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 14/65 (21%)
Query: 482 QERIQKERKEKLWDPSHRKAQAE------------AQKNLQNFIQKHADAKNLSRENKLL 529
QE ++KE +++ + Q E A++ L+ + +A+ L+R +LL
Sbjct: 28 QENLEKE--QEITSLQKKNQQLEEEVEKLEEQLKEAKEKLEESEKLATNAEALTRRIQLL 85
Query: 530 KEELE 534
+EELE
Sbjct: 86 EEELE 90
>gnl|CDD|177251 MTH00208, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 628
Score = 32.6 bits (75), Expect = 0.83
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 288 TLTSPTMYIDSESRSLSLIL-IPVIFWLINSLRLNSSHLSFLTSHNTLTNQ---IQLSSS 343
P + + +SL LI+ I + + L SS+ + L+NQ + +S S
Sbjct: 498 VFNLPPLTLPLILKSLPLIVTIIGAAFSFSFLLSLSSNPINSNFFSFLSNQWFFVNISHS 557
Query: 344 DSTNPTMTSSSSFS 357
+ + +S S
Sbjct: 558 IIISFSFFTSLFGS 571
Score = 29.9 bits (68), Expect = 6.0
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 291 SPTMYIDSESRSLSLILIPVIFWLINSLRLNSSHLSFLTSHNTLTNQIQLSSSDSTNPTM 350
+P+M I S + S+ +IL+ IF+ N +++S+ S ++N + I ++S+ + +
Sbjct: 4 NPSMIISSINLSIFIILLISIFFSSNLPNISTSNASLGGNNNN-NSIINYNNSNFSISLL 62
Query: 351 TSSSSFSITPPIIEF 365
+ + S+ +I
Sbjct: 63 KTLAFLSLINLLIWI 77
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 32.5 bits (74), Expect = 0.90
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 479 KLLQERIQKERKEKLWDPSHRKAQAEAQKNLQN-------FIQKHADAKNLSRENKLLKE 531
K LQ + K++ + + + + E +K L+ ++ NL E K +E
Sbjct: 132 KQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEE 191
Query: 532 ELESM---VESLNNLEK 545
+ ES ++ L +
Sbjct: 192 QRESKWAILKKLKRRAE 208
Score = 30.9 bits (70), Expect = 2.6
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 475 ELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQN-FIQKHADAKNLSRENKLLKEEL 533
E ++L + E++ +R A+ + L+ I + + KN N+ +K+
Sbjct: 35 EDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKN--LFNEQIKQFE 92
Query: 534 ESMVESLNNLEK 545
++ + + LE
Sbjct: 93 LALQDEIAKLEA 104
Score = 30.2 bits (68), Expect = 3.7
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 475 ELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADA---------KNLSRE 525
E K Q R K+ KE Q + QKNL N K + + L
Sbjct: 50 EANEKRAQYRSAKK-KELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELL 108
Query: 526 NKLLKEELESMVESLNNLEKKF 547
N +ELE + + L+ L K+
Sbjct: 109 NLEKDKELELLEKELDELSKEL 130
>gnl|CDD|177142 MTH00070, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 346
Score = 32.2 bits (74), Expect = 1.0
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Query: 327 FLT--SHNTLTNQIQLSSSDSTNPTMTSSSSFSIT-----PPIIEF-PKW 368
FL + N+ TN +LSSS S NPT+TS ++ PP F PKW
Sbjct: 216 FLMLMNLNS-TNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKW 264
>gnl|CDD|225533 COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and
metabolism].
Length = 498
Score = 32.2 bits (74), Expect = 1.1
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 30 LIISALQQQGLSYSPYSIRRALEIT--AQYIPSVEPY--AQGFGLLQVEKALEWLEKYHA 85
+ SA Q+ +S + ++ R+ LEI + I ++E AQ L + +A
Sbjct: 406 IPTSANQEDHVSMATHAARKLLEIIENLRTILAIELLAAAQAVDLRAPLDLSPGTKAAYA 465
Query: 86 ELESKVRF 93
+ KV F
Sbjct: 466 AVREKVPF 473
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 30.6 bits (70), Expect = 1.1
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 479 KLLQERIQKERKEKLWDPSHRKAQAEA-QKNLQNFIQK-HADAKNLSR-ENKLLKEELES 535
K Q++++KE K+ R+A+ E +K LQ +K DA LS + ++EL+
Sbjct: 17 KAAQKQLEKEFKK-------RQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQK 69
Query: 536 MVESLNNLEKKFN 548
V+ ++K
Sbjct: 70 KVQEFQRKQQKLQ 82
Score = 28.3 bits (64), Expect = 7.8
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 508 NLQNFIQKHADAKN----LSRENKLLKEELESMVESLNNLEKKFN 548
++Q +Q+ K L +E K + ELE + + L L++K
Sbjct: 5 DVQKILQESPAGKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQ 49
>gnl|CDD|200086 TIGR01225, hutH, histidine ammonia-lyase. This enzyme deaminates
histidine to urocanic acid, the first step in histidine
degradation. It is closely related to phenylalanine
ammonia-lyase [Energy metabolism, Amino acids and
amines].
Length = 506
Score = 32.0 bits (73), Expect = 1.1
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 33 SALQQQGLSYSPYSIRRALEITA--QYIPSVEPYA--QGFGLLQVEKALEWLEKYHAELE 88
SA Q+ +S ++ R+ E+ + + ++E A QG K LEK + +
Sbjct: 407 SANQEDHVSMGAHAARKLREMIENVRRVIAIELLAACQGLEFRDPLKTSAKLEKAYQAVR 466
Query: 89 SKVR 92
S V
Sbjct: 467 SVVA 470
>gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain,
uncharacterized subfamily 15. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 242
Score = 31.2 bits (71), Expect = 1.5
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 393 VVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITGLSG 450
VV+AI D+GVD L GKPK++ ++ + T D H T +G
Sbjct: 1 VVVAIIDTGVDLNHPDLS----GKPKLVPGWN---FVSNNDPT---SDIDGHGTACAG 48
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 31.8 bits (72), Expect = 1.5
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 15/80 (18%)
Query: 479 KLLQERIQKERKEKLWDPSHRKAQAEAQK----NLQNFIQK-------HADAKNLSRENK 527
KL+Q + +KE H++AQ E ++ +N+ ++ K L K
Sbjct: 69 KLIQLENELMQKEL----EHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEK 124
Query: 528 LLKEELESMVESLNNLEKKF 547
+ E E L+ K
Sbjct: 125 KAENEAAEAEEEAKLLKDKL 144
Score = 31.1 bits (70), Expect = 2.5
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 458 SWKNPTGDFHIGLKNVYELYPK---LLQERIQ-KERKE------KLWDPSHRKAQAEAQK 507
SWK+ D + L+ +L + L E +Q KE+ K + + ++ Q E QK
Sbjct: 323 SWKSLLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSISSSAKQLETTLQQLQLERQK 382
Query: 508 NLQNFIQK-------HADAKNLSRENKLLKEELESMVESLNNLEK 545
+ ++ A + L R L+ +E + + LN+ +K
Sbjct: 383 AVSEILELKKKLEALKALVRRLQRRLTLVTKERDGLRAILNSYDK 427
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 31.9 bits (73), Expect = 1.5
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 499 RKAQAEAQKNLQNFIQKHADAKN-LSRENKLLKEELESMVESLNNLEKKFNCHDL 552
R E + L+N +++ D L RENK L++E+ + + L + N H+L
Sbjct: 408 RNLSTELFR-LKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGR--NVHEL 459
Score = 31.6 bits (72), Expect = 2.0
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 488 ERKEKLWDPSHRKAQAEAQKNLQNFIQK----HADAKNLSRENKLLKEELESMVESLNNL 543
E+K+K +D K AE ++ + + +A+NLS E LK ELE + + + L
Sbjct: 376 EKKQKNFD----KILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEAL 431
Query: 544 EKK 546
++
Sbjct: 432 RRE 434
>gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain,
uncharacterized subfamily 9. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 261
Score = 31.1 bits (71), Expect = 1.7
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
NGTS S P G +A + A +++ I+ A+ +A
Sbjct: 223 ANGTSFSCPLIAGLIACLWQAHP----NWTNLQIKEAILKSA 260
>gnl|CDD|237005 PRK11864, PRK11864, 2-ketoisovalerate ferredoxin oxidoreductase
subunit beta; Provisional.
Length = 300
Score = 31.2 bits (71), Expect = 1.7
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 490 KEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSREN-KLLKEELESMVESLNNLEKKFN 548
K KL PS + +K ++ +++ K+L+ E K L+EE++ M E + L KKF
Sbjct: 241 KFKLNSPSKTLLDKKKRKPVEEYLKLQGRFKHLTEEEIKGLQEEIDEMWEEIKKLAKKFG 300
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 29.5 bits (67), Expect = 1.7
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 478 PKLLQERIQKERKEKLW-------DPSHRKAQAEAQ--KNLQNFIQK--------HADAK 520
P+ ++E+++K + L D R+ Q E + + +N + K DA+
Sbjct: 11 PEAVKEKLRKRGVDVLDVDELLELDEERRELQVELEELQAERNELSKEIGKAKKKKEDAE 70
Query: 521 NLSRENKLLKEELESMVESLNNLEKKFN 548
L E K LK+EL+++ L LE + +
Sbjct: 71 ALIAEVKELKDELKALEAELRELEAELD 98
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 31.6 bits (72), Expect = 1.7
Identities = 12/70 (17%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 479 KLLQERIQKERKEKLWDPSH--RKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESM 536
K++++ + + E + K + L+ FI++ + + L +E ++ELE +
Sbjct: 149 KVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEK---EKELEEV 205
Query: 537 VESLNNLEKK 546
+ +N + +
Sbjct: 206 LREINEISSE 215
Score = 29.3 bits (66), Expect = 8.3
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 470 LKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLL 529
LK E Y KL + +E ++L + R ++ E + + ++ + + + L
Sbjct: 288 LKEKAEEYIKLSEFY--EEYLDELREIEKRLSRLEEE--INGIEERIKELEEKEERLEEL 343
Query: 530 KEELESMVESLNNLEKK 546
K++L+ + + L LE++
Sbjct: 344 KKKLKELEKRLEELEER 360
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 30.9 bits (70), Expect = 2.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 482 QERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHA-DAKNLSRENKLLKEELESM 536
QER+++ KE+L +K QAE QK A +A + K E E+
Sbjct: 100 QERLKQLEKERLAAQEQKK-QAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAK 154
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 30.5 bits (69), Expect = 2.2
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 475 ELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQK----HADAKNLSRENKLLK 530
EL L +E+ KE K ++ + +K+ Q I + + A + ++K
Sbjct: 94 ELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQEIIDELETSNLPANVIIAQHKKQS 153
Query: 531 EELESMVESLNNLEK-KFN 548
++LES VE L ++ F+
Sbjct: 154 KQLESQVEKLERKKRVTFS 172
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 31.3 bits (71), Expect = 2.3
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 472 NVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKE 531
N+ +LLQ ++ E +EK+ + +AE ++ LQ I+ + E + L+E
Sbjct: 643 NLQAELEELLQAALE-ELEEKV-----EELEAEIRRELQ-RIENEEQLEEKLEELEQLEE 695
Query: 532 ELESMVESLNNLEKKFN 548
ELE + E L L KK
Sbjct: 696 ELEQLREELEELLKKLG 712
>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding. This family
is found in mammals where it is localised at cell-cell
adherens junctions, and in Sch. pombe and other fungi
where it anchors spindle-pole bodies to spindle
microtubules. It is a coiled-coil structure, and in
pombe, it is required for anchoring the minus end of
spindle microtubules to the centrosome equivalent, the
spindle-pole body. The name ADIP derives from the family
being composed of Afadin- and alpha -Actinin-Binding
Proteins Localised at Cell-Cell Adherens Junctions.
Length = 149
Score = 30.0 bits (68), Expect = 2.4
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 481 LQERIQKERKEKLWDPSHRKAQA--EAQKNLQNFIQKHADAKNLSRENKLLKEELESMVE 538
LQ I++ K +L D R+ ++ L+ K L ++ K KEE++ +
Sbjct: 69 LQNTIERL-KTQLED-LERELALLQAKERQLE------KKLKTLEQKLKNEKEEVQRLKN 120
Query: 539 SLNNLEKKFNCHDL 552
+ + ++N H+L
Sbjct: 121 IIQQRKTQYN-HEL 133
>gnl|CDD|151045 pfam10482, CtIP_N, Tumour-suppressor protein CtIP N-terminal
domain. CtIP is predominantly a nuclear protein that
complexes with both BRCA1 and the BRCA1-associated RING
domain protein (BARD1). At the protein level, CtIP
expression varies with cell cycle progression in a
pattern identical to that of BRCA1. Thus, the
steady-state levels of CtIP polypeptides, which remain
low in resting cells and G1 cycling cells, increase
dramatically as Dividing cells traverse the G1/S
boundary. CtIP can potentially modulate the functions
ascribed to BRCA1 in transcriptional regulation, DNA
repair, and/or cell cycle checkpoint control. This
N-terminal domain carries a coiled-coil region and is
essential for homodimerisation of the protein. The
C-terminal domain is family pfam08573.
Length = 120
Score = 29.5 bits (66), Expect = 2.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 499 RKAQAE----AQKNLQNFIQKHADAKNLSRENKLLKEELE 534
+K Q E Q+NLQ + + K L+ EN+ L EEL+
Sbjct: 81 KKKQQELENNHQQNLQVISELTNEMKTLTEENRRLSEELK 120
>gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional.
Length = 639
Score = 31.1 bits (70), Expect = 2.7
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+NGTSM+APH +LI+S LSY + R L+ + +PS++ + G L +
Sbjct: 553 LNGTSMAAPHVAAIASLILSI--NPSLSYE--EVIRILKESIVQLPSLKNKVKWGGYLDI 608
Query: 74 EKAL 77
A+
Sbjct: 609 HHAV 612
>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
subunit [Signal transduction mechanisms].
Length = 460
Score = 30.8 bits (69), Expect = 2.9
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
Query: 237 TTKHHFVLVPKEATIAVLKIRSNSLEAQGKFILHCTQHKPK---LYMAVEVHKVTLTSPT 293
T ++HF+L + TI + KI +L+ + L + H P L E+ L+
Sbjct: 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD 156
Query: 294 MYIDSESRSLSLILIPVIFWLINSLRLNSSHLSFLTSHNTLTNQIQLSSSD 344
I ++ + P INS+ NS + L++ + N L D
Sbjct: 157 EIIAAKPCRVYANAHPYH---INSISFNSDKETLLSADDLRINLWNLEIID 204
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 30.7 bits (69), Expect = 3.1
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 13 HMNGTSMSAPHATGCVALIIS-ALQQQGLSYSPYSIRRALEI-TAQYIPSV 61
+ + A HA+G V++ IS AL+ ++SP RRALE + IPS
Sbjct: 1565 RLEQMRVEALHASGRVSIEISDALETLARTHSPEGARRALEYGVSIVIPSA 1615
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 29.6 bits (67), Expect = 3.4
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 482 QERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESL 540
++ ++ +E +A+ E ++ + + + E + EEL + V L
Sbjct: 82 KKEAEQIAEEIK-----AEAEEELERIKEAAEAE------IEAEKERALEELRAEVAEL 129
>gnl|CDD|163064 TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a
subset of endospore-forming members of the Firmcutes,
members of this protein family are found, several to a
genome. Two very strongly conserved sequences regions
are separated by a highly variable linker region. Much
of the linker region was excised from the seed alignment
for this model. A characterized member is the
prespore-specific transcription RsfA from Bacillus
subtilis, previously called YwfN, which is controlled by
sigma factor F and seems to fine-tune expression of some
genes in the sigma-F regulon. A paralog in Bacillus
subtilis is designated YlbO [Regulatory functions, DNA
interactions, Cellular processes, Sporulation and
germination].
Length = 161
Score = 29.3 bits (66), Expect = 3.5
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 482 QERIQ---KERKEKLWDPSHRKAQAEAQKN-----LQNFIQKHADAKNLSRENKLLKEEL 533
+E I+ K+RKE ++ LQN + + L +EN+ LK +
Sbjct: 60 EEAIELAKKQRKEL------KREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQN 113
Query: 534 ESMVESLNNLEKK 546
ES+ + LEK+
Sbjct: 114 ESLQKRNEELEKE 126
>gnl|CDD|227439 COG5108, RPO41, Mitochondrial DNA-directed RNA polymerase
[Transcription].
Length = 1117
Score = 30.7 bits (69), Expect = 3.7
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 481 LQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLL---KEELESMV 537
E+ E++W + + +KN +K+A+A NLS ++ KEE+ ++
Sbjct: 255 WLEKSAIALAEEMWKAGIERFEKRGEKN----REKNAEASNLSWYRMIIHLHKEEIAGLL 310
Query: 538 ESL---NNLEKKFNCHDLGP 554
E+L +L K GP
Sbjct: 311 EALLAEASLGKAGKRLTYGP 330
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 29.8 bits (67), Expect = 4.0
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 471 KNVYELYPKLLQERIQKERKEKLWDPSHRKA---QAEAQKNLQNFIQKHADAKNLSRENK 527
K + L L QER+++ + ++ + + E ++ ++ ++K + K +E +
Sbjct: 131 KEILPLLLYLGQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELE 190
Query: 528 LLKEELESMVESLN 541
LKEELE ++E L
Sbjct: 191 ELKEELEELLEELE 204
>gnl|CDD|218038 pfam04350, PilO, Pilus assembly protein, PilO. PilO proteins are
involved in the assembly of pilin. However, the precise
function of this family of proteins is not known.
Length = 144
Score = 29.0 bits (66), Expect = 4.1
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 500 KAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLEK 545
+AQA+ Q F +K A NL K++LE + E L K
Sbjct: 3 RAQAKEATLKQEFEEKARQAANL----PAYKKQLEELEERFGALLK 44
>gnl|CDD|233142 TIGR00826, EIIB_glc, PTS system, glucose-like IIB component. The
PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial
PTS transporters transport and concomitantly
phosphorylate their sugar substrates, and typically
consist of multiple subunits or protein domains. The Glc
family includes permeases specific for glucose,
N-acetylglucosamine and a large variety of a- and
b-glucosides. However, not all b-glucoside PTS permeases
are in this class, as the cellobiose (Cel) b-glucoside
PTS permease is in the Lac family (TC #4.A.3). These
permeases show limited sequence similarity with members
of the Fru family (TC #4.A.2). Several of the E. coli
PTS permeases in the Glc family lack their own IIA
domains and instead use the glucose IIA protein (IIAglc
or Crr). Most of these permeases have the B and C
domains linked together in a single polypeptide chain,
and a cysteyl residue in the IIB domain is
phosphorylated by direct phosphoryl transfer from
IIAglc(his~P). Those permeases which lack a IIA domain
include the maltose (Mal), arbutin-salicin-cellobiose
(ASC), trehalose (Tre), putative glucoside (Glv) and
sucrose (Scr) permeases of E. coli. Most, but not all
Scr permeases of other bacteria also lack a IIA domain.
This model is specific for the IIB domain of the Glc
family PTS transporters [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids, Signal
transduction, PTS].
Length = 88
Score = 28.1 bits (63), Expect = 4.6
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 468 IGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQ 514
G NV ++ + + R+ K+ D +K A LQ +Q
Sbjct: 38 GGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGAHGVNPLQRAVQ 84
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 29.6 bits (67), Expect = 4.9
Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 479 KLLQE-RIQKERKEKLWDPSH---RKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELE 534
+Q+ ++K+R E +KA+AE + + + ++L + L+ E++
Sbjct: 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQ 69
Query: 535 SMVESLNNLEKK 546
+ E + E+K
Sbjct: 70 EIRERIKRAEEK 81
>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit. This family includes
prefoldin subunits that are not detected by pfam02996.
Length = 106
Score = 28.4 bits (64), Expect = 5.0
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 503 AEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLN 541
+ Q+ LQ Q+ + +E +L+ EELE + E
Sbjct: 8 QQLQQQLQLLAQQIKQLETQLKEIELVLEELELLDEDTK 46
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It is
a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 29.7 bits (67), Expect = 5.1
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 19/86 (22%)
Query: 485 IQKERKEKLWDPSHR------KAQAEAQKNLQ---NFIQKHADAKN-----LSRENKLLK 530
+QK K L + + + + E + Q IQ + + L EN+ L+
Sbjct: 83 LQKHNK-TLKEENKARSDEEEEKRKELTEKFQSTLKDIQDQMEEHSNPNHKLCEENEELR 141
Query: 531 EELESMVESLN----NLEKKFNCHDL 552
E+L+ ++E + EK DL
Sbjct: 142 EKLKELIEQYELREQHFEKLLKTKDL 167
Score = 29.3 bits (66), Expect = 6.5
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 470 LKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAK--------N 521
L+ + + +LL+E + E+ K + Q E + LQ+ K A+
Sbjct: 24 LETLIKRLAELLKEMKRLEKDLKKLQKRGEQLQKE-KDKLQSEHSKAILARSKLESLCRE 82
Query: 522 LSRENKLLKEE 532
L + NK LKEE
Sbjct: 83 LQKHNKTLKEE 93
>gnl|CDD|188690 cd08736, RGS_RhoGEF-like, Regulator of G protein signaling (RGS)
domain found in the Rho guanine nucleotide exchange
factor (RhoGEF) protein. The RGS domain found in the
Rho guanine nucleotide exchange factor (RhoGEF) protein
subfamily of the RGS domain containing protein family,
which is a diverse group of multifunctional proteins
that regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RhoGEFs link
signals from heterotrimeric G-alpha12/13 protein-coupled
receptors to Rho GTPase activation, leading to various
cellular responses, such as actin reorganization and
gene expression. The RGS domain of the RhoGEFs has very
little sequence similarity with the canonical RGS domain
of the RGS proteins and therefore is often refered to as
the RH (RGS Homology) domain. The RGS-GEFs subfamily
includes the leukemia-associated RhoGEF (LARG),
p115RhoGEF, and PDZ-RhoGEF. RGS proteins play critical
regulatory role as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development.
Length = 120
Score = 28.4 bits (64), Expect = 5.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 479 KLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQK 515
K L I +E +++ + +A E Q+ L++F QK
Sbjct: 72 KRLPNLIDEEDLRRVFQEAQERAMPEIQEQLEDFRQK 108
>gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain,
uncharacterized subfamily 4. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 239
Score = 29.6 bits (67), Expect = 5.4
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 16 GTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQ 56
GTS +AP T +AL LQ L+ R L TA+
Sbjct: 190 GTSFAAPFVTAALAL---LLQASPLAPDD--ARARLAATAK 225
>gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase. This domain family is found in
eukaryotes, and is approximately 140 amino acids in
length. The family is found in association with
pfam00069. Polo-like kinase 1 (Plx1) is essential during
mitosis for the activation of Cdc25C, for spindle
assembly, and for cyclin B degradation. This family is
Polo kinase kinase (PKK) which phosphorylates Polo
kinase and Polo-like kinase to activate them. PKK is a
serine/threonine kinase.
Length = 142
Score = 28.4 bits (64), Expect = 5.9
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 483 ERIQKERKEKLWDPSHRKAQAEAQKNLQNFI---QKHADAK---NLSRENKLLKEELESM 536
ER QK EKL + Q + + L I QK +L E K LK+E+E +
Sbjct: 32 ERQQKRTIEKL-----EQRQTQELRRLPKRIRAEQKTRLKMFKESLKIEKKELKQEVEKL 86
>gnl|CDD|216704 pfam01793, Glyco_transf_15, Glycolipid 2-alpha-mannosyltransferase.
This is a family of alpha-1,2 mannosyl-transferases
involved in N-linked and O-linked glycosylation of
proteins. Some of the enzymes in this family have been
shown to be involved in O- and N-linked glycan
modifications in the Golgi.
Length = 273
Score = 29.4 bits (67), Expect = 6.2
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 531 EELESMVESLNNLEKKFN 548
ELE +++S+ ++E +FN
Sbjct: 12 SELEGLLKSIRSVEDRFN 29
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 29.2 bits (66), Expect = 6.8
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 18/72 (25%)
Query: 471 KNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLK 530
+ Y+ + K L E+++ ER+ K AE ++ L L + +LLK
Sbjct: 238 ERSYQEHVKQLIEKMEAERE---------KLLAEQERML---------EHKLQEQEELLK 279
Query: 531 EELESMVESLNN 542
E ++ ESL
Sbjct: 280 EGFKTEAESLQK 291
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 28.8 bits (65), Expect = 7.1
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 481 LQERIQKERKE----KLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESM 536
LQE++ + ++E K + QK L Q A+A L EN+ L+EEL +
Sbjct: 85 LQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDEENRELREELAEL 144
Query: 537 VESLNNLEKK 546
+ LE +
Sbjct: 145 KQENEALEAE 154
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational
modification, protein turnover, chaperones].
Length = 578
Score = 29.5 bits (66), Expect = 7.1
Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 26/158 (16%)
Query: 407 AGLQVTSDGKPKVIERYDCGGAGDVDTST--VVKVDDTNHITGLSGRKLKIPTSWKNPTG 464
+ TS + + + + VD+ T + H+ +S +P
Sbjct: 82 PAVASTSPNNSIIESKLNLNQSSCVDSKTLDIYSHPTPKHMYFVS--------DHNHPKF 133
Query: 465 DFHIGLKNVYE---------LYPKLLQER---IQKERKEKLWDPSHRKAQAEAQKN-LQN 511
+I + +Y LL++ R + N N
Sbjct: 134 SLYIQQEVIYSPQVNLISDVELIILLKKSSFMAIISRDLFKV--KMILDVNLSSINRNTN 191
Query: 512 FIQKHADAKNLSRENKLLKEELESM-VESLNNLEKKFN 548
+ K + LS +N LL + S+ +E L+ EK
Sbjct: 192 ILIKSTASSILSIKNFLLMSYINSIKLEILDQSEKHLT 229
Score = 29.1 bits (65), Expect = 9.0
Identities = 21/147 (14%), Positives = 41/147 (27%), Gaps = 38/147 (25%)
Query: 298 SESRSLSLILIPVI-----FWLINS---LRLNSSHLSFLTSHNTLTNQIQLSSSD----- 344
+ +S + + ++ F I S ++ L+S N TN + S++
Sbjct: 145 PQVNLISDVELIILLKKSSFMAIISRDLFKVKMILDVNLSSINRNTNILIKSTASSILSI 204
Query: 345 ----------STNPTMTSSSSFSITPPIIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVV 394
S + S +T P L K+ L +K+ R
Sbjct: 205 KNFLLMSYINSIKLEILDQSEKHLTHPSSSPESSPSLNMKQ---LINSTKNAFKSLR--- 258
Query: 395 IAIFDSGVDPGAAGLQVTSDGKPKVIE 421
L S ++ +
Sbjct: 259 ---------LKKTKLSTNSPHSSQIHK 276
>gnl|CDD|178652 PLN03105, TCP24, transcription factor TCP24 (TEOSINTE BRANCHED1,
CYCLOIDEA, AND PCF FAMILY 24); Provisional.
Length = 324
Score = 29.1 bits (64), Expect = 7.4
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 317 SLRLNSSHLSFLTSHNTLTNQIQLSSSDSTNPTMTSSSS--FSITPPIIE 364
+L+ NS L FL ++N +T + +SSS S++ M S S F TPP ++
Sbjct: 243 TLQSNSQSL-FLNNNNNITQRSSISSSSSSSSPMDSQSISFFMATPPPLD 291
>gnl|CDD|216555 pfam01531, Glyco_transf_11, Glycosyl transferase family 11. This
family contains several fucosyl transferase enzymes.
Length = 298
Score = 29.1 bits (65), Expect = 7.8
Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 32/148 (21%)
Query: 444 HITGLSGRKLKIPTSWKNPTGDFHIGLKN--VYELYPK-LLQERIQKERKEKLWDPSHRK 500
H+ G + P SW +H GL+ +YE L+E IQ R
Sbjct: 107 HLRGEYVKFTGYPCSWTF----YHHGLRQEILYEFTLHDHLREEIQN---------FLRG 153
Query: 501 AQAEAQKNLQNFIQKHAD----AKNLSRENKLLKEELESMVESLNNLEKKFNCHDLGPAY 556
Q F+ H + + K + ++ ++++L+ +++ +
Sbjct: 154 LQVNLGSRPSTFVGVHIRRGDYVDVMPKVWKGVVADINYLIQALDWFRARYS------SP 207
Query: 557 DVVVFHNGDYWC------ACVDTTETGD 578
VVF + WC +C D GD
Sbjct: 208 VFVVFSDDMEWCKKNIDTSCGDVYFAGD 235
>gnl|CDD|152704 pfam12269, zf-CpG_bind_C, CpG binding protein zinc finger C
terminal domain. This domain family is found in
eukaryotes, and is approximately 240 amino acids in
length. This domain is the zinc finger domain of a CpG
binding DNA methyltransferase protein. It contains a
CxxC motif which forms the zinc finger and binds to DNA.
Length = 236
Score = 29.0 bits (65), Expect = 7.9
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 471 KNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLK 530
K +YE+ P+ +QE W+ + A+ +K L+ +K A+ +E +
Sbjct: 3 KRIYEILPQRIQE----------WNLTPCVAEEIGKKALERIRKKQQVARTRLQELERRH 52
Query: 531 EELESMVE 538
+ELE+++
Sbjct: 53 QELETIIS 60
>gnl|CDD|233089 TIGR00680, kdpA, K+-transporting ATPase, KdpA. Kdp is a high
affinity ATP-driven K+ transport system in Escherichia
coli. It is composed of three membrane-bound subunits,
KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is
the K+-transporting subunit of this complex. During
assembly of the complex, KdpA and KdpC bind to each
other. This interaction is thought to stabilize the
complex [medline:9858692]. Data indicates that KdpC
might connect the KdpA, the K+-transporting subunit, to
KdpB, the ATP-hydrolyzing (energy providing) subunit
[medline:9858692] [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 563
Score = 29.1 bits (65), Expect = 8.5
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 215 VLGSNPSSKPAVSWD-----QVDFKANTTKHHF 242
L NP+ PA SWD V F NT +
Sbjct: 90 SLPLNPTGLPAPSWDLALNTAVSFVTNTNWQSY 122
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 28.4 bits (64), Expect = 8.9
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 478 PKLLQERI-----QKERKEKLWDPSHR---KAQAEAQKNLQNFIQKHADAKNLSRENKLL 529
KLL++ + QK++ +K W K +AE QK + ++K D K ++ K
Sbjct: 141 EKLLKKALKRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAK 200
Query: 530 KE 531
K+
Sbjct: 201 KK 202
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 29.4 bits (66), Expect = 9.0
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 501 AQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLEKKFN 548
E + +F Q+ A+ N + NK+ KE+ S L+ LEK
Sbjct: 1988 EYEELKDLRNSFNQEKAETLNNLKLNKI-KEDFNSYKNLLDELEKSVK 2034
>gnl|CDD|200466 cd11327, AmyAc_Glg_debranch_2, Alpha amylase catalytic domain found
in glycogen debranching enzymes. Debranching enzymes
facilitate the breakdown of glycogen through
glucosyltransferase and glucosidase activity. These
activities are performed by a single enzyme in mammals,
yeast, and some bacteria, but by two distinct enzymes in
Escherichia coli and other bacteria. Debranching enzymes
perform two activities, 4-alpha-D-glucanotransferase (EC
2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33).
4-alpha-D-glucanotransferase catalyzes the
endohydrolysis of 1,6-alpha-D-glucoside linkages at
points of branching in chains of 1,4-linked
alpha-D-glucose residues. Amylo-alpha-1,6-glucosidase
catalyzes the endohydrolysis of 1,6-alpha-D-glucoside
linkages at points of branching in chains of 1,4-linked
alpha-D-glucose residues. The catalytic triad (DED),
which is highly conserved in other debranching enzymes,
is not present in this group. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek
key. The majority of the enzymes have an active site
cleft found between domains A and B where a triad of
catalytic residues (Asp, Glu and Asp) performs
catalysis. Other members of this family have lost the
catalytic activity as in the case of the human 4F2hc, or
only have 2 residues that serve as the catalytic
nucleophile and the acid/base, such as Thermus A4
beta-galactosidase with 2 Glu residues (GH42) and human
alpha-galactosidase with 2 Asp residues (GH31). The
family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 478
Score = 29.1 bits (66), Expect = 9.2
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 35 LQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEKALEWLEKYH 84
LQ+ G S SPYSI LE+ P P + VE+ ++ LEK
Sbjct: 58 LQELGESNSPYSIADQLEL----NPDFFPDGKKKTFEDVEELVKKLEKEW 103
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 29.1 bits (66), Expect = 9.3
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 507 KNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLEK 545
++Q + K L E+KL++++LE + L+ +++
Sbjct: 39 ADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDR 77
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic
subunit.
Length = 1079
Score = 29.1 bits (65), Expect = 9.6
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 427 GAGDVDTSTVVKVDDT---NHITGLSGRKLKIPTSWKNP 462
G GD+D ST V +DD + RK+ IP+S NP
Sbjct: 232 GGGDIDASTDVLMDDALLNDEARQPLSRKVSIPSSRINP 270
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 29.0 bits (65), Expect = 10.0
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 482 QERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLN 541
E+ +++ E L K Q + +K L+ +++ RE E + E+L
Sbjct: 523 LEKELEQKNEHL--EKLLKEQEKLKKELEQEMEEL-----KERERNKKLELEKEAQEALK 575
Query: 542 NLEK 545
L+K
Sbjct: 576 ALKK 579
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,757,451
Number of extensions: 3393644
Number of successful extensions: 3869
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3838
Number of HSP's successfully gapped: 152
Length of query: 698
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 594
Effective length of database: 6,324,786
Effective search space: 3756922884
Effective search space used: 3756922884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.5 bits)