RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14141
(698 letters)
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase,
hydrolase, phosphoprotein, protease; 3.14A {Drosophila
melanogaster}
Length = 1354
Score = 317 bits (812), Expect = 5e-94
Identities = 134/330 (40%), Positives = 187/330 (56%), Gaps = 20/330 (6%)
Query: 359 TPPIIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKP- 417
+ + FP L+PK ETGVLN L K+PEYDGR V IAIFDSGVDP A GL+ DGK
Sbjct: 4 SGIVESFPTGALVPKAETGVLNFLQKYPEYDGRDVTIAIFDSGVDPRATGLETLCDGKTV 63
Query: 418 KVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLKIPTSW----KNPTGDFHIGLKNV 473
KVIERYDC G GDVD V D+ +I GLSG LK+ +P +GLK+
Sbjct: 64 KVIERYDCSGCGDVDMKKKVTPDENGNIKGLSGNSLKLSPELMALNTDPEKAVRVGLKSF 123
Query: 474 YELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKH-ADAKNLSRENKLLKEE 532
+L P ++ I + K K WD H+ A A A + + F ++ +A L + K+LKE
Sbjct: 124 SDLLPSKVRNNIVAQAKLKHWDKPHKTATANASRKIVEFESQNPGEASKLPWDKKILKEN 183
Query: 533 LESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTR 592
L+ +E LN+ EK + D+ +YD ++F D W VDTTE GDL +GEY+ T
Sbjct: 184 LDFELEMLNSYEKVYG--DIKTSYDCILFPTADGWLTIVDTTEQGDLDQALRIGEYSRTH 241
Query: 593 DFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPGAQI 652
+ ++ D + S+NV++EGNVLE+VG+ S HGTHV+SIA+ + +GVAP A+I
Sbjct: 242 ETRNV--DDFLSISVNVHDEGNVLEVVGMSSPHGTHVSSIASGNHSSR-DVDGVAPNAKI 298
Query: 653 ISLCIDGKPKVIERYDCGGAGDVDTSTVVK 682
+S+ + D + +V+
Sbjct: 299 VSM------TIG---DGRLGSMETGTALVR 319
Score = 233 bits (594), Expect = 5e-65
Identities = 123/304 (40%), Positives = 182/304 (59%), Gaps = 14/304 (4%)
Query: 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVE 62
+ ++Q MNGTSM+APH G VAL+IS L+QQ + YSPYSI+RA+ +TA + V+
Sbjct: 447 VPQFTMSKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVD 506
Query: 63 PYAQGFGLLQVEKALEWLEKYHAELESKVRFHVTCAGSSSKNKGIHLRVGDQQVPKEVNV 122
P+AQG GLL VEKA E L ++ ++ +RF V ++ +KGIHLR G Q+ + NV
Sbjct: 507 PFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRV--GNNADKGIHLRQGVQRNSIDYNV 564
Query: 123 SVEPVFADSDNIVFDPEIKYNFQMSLSLTCSVPWVQFPNHLELMNISRQFNVKVDPSSLT 182
+EP+F + DP+ K+NF + L+L S PWVQ L+L +R V+VDP+ L
Sbjct: 565 YIEPIFYNDKEA--DPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIAVRVDPTGLQ 622
Query: 183 PGVHNGTIFAFDSNKPEKGHVFSVEVTVVKPIVLGSNPSSK-----PAVSWDQVDFKANT 237
PGVH+ I A+D++ +KG +F + VTVV+P VL S+ ++ + + V+F+ NT
Sbjct: 623 PGVHSAVIRAYDTDCVQKGSLFEIPVTVVQPHVLESDQNTPVFEPASSKGDNSVEFQPNT 682
Query: 238 TKHHFVLVPKEATIAVLKIRS---NSLEAQGKFILHCTQHKP-KLYMAVEVHK-VTLTSP 292
+ F+LVP+ AT A L++R N E GKF +H Q P + +E K V++ S
Sbjct: 683 IQRDFILVPERATWAELRMRITDPNRGEDIGKFFVHTNQLLPKQSCRKLETMKIVSVGSE 742
Query: 293 TMYI 296
I
Sbjct: 743 NESI 746
Score = 58.3 bits (140), Expect = 8e-09
Identities = 29/55 (52%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 645 GVAPGAQIISLCIDGKP-KVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLK 698
GV P A + DGK KVIERYDC G GDVD V D+ +I GLSG LK
Sbjct: 46 GVDPRATGLETLCDGKTVKVIERYDCSGCGDVDMKKKVTPDENGNIKGLSGNSLK 100
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel,
hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1
PDB: 1wme_A 1wmf_A
Length = 434
Score = 70.4 bits (172), Expect = 6e-13
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISAL-QQQGLSYSPYSIRRALEITAQYIPSV 61
++ + + +M GTSM+ P G VA + + +G++ P ++ AL A I
Sbjct: 240 FWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLG 299
Query: 62 EP-YAQGFGLLQVEKALE 78
P QG+G + ++K+L
Sbjct: 300 YPNGNQGWGRVTLDKSLN 317
Score = 50.0 bits (119), Expect = 2e-06
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 388 YDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITG 447
G+G ++A+ D+G+D G + + K+ Y G + + D H T
Sbjct: 19 LYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNAN-------DTNGHGTH 71
Query: 448 LSG 450
++G
Sbjct: 72 VAG 74
Score = 38.4 bits (89), Expect = 0.007
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIIS 654
+ HGTHVA + G+AP A ++
Sbjct: 65 TNGHGTHVAGSVLG---NGSTNKGMAPQANLVF 94
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase,
patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A
Length = 360
Score = 68.7 bits (168), Expect = 1e-12
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYI---P 59
+ +E + GTSM+AP TG AL++S QQG ++R AL TA
Sbjct: 277 GAQPCTEEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV 336
Query: 60 SVEPYAQGFGLLQVEKALEWL 80
EP G + + A++ L
Sbjct: 337 VEEPERCLRGFVNIPGAMKVL 357
Score = 46.7 bits (111), Expect = 1e-05
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 16/65 (24%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKN----GVAPGAQIISLCIDGKPKVIERYDCGGAGDVDT 677
+ H HV S +++ G+AP ++I++ +
Sbjct: 124 LNDHACHVTSTIVG------QEHSPVFGIAPNCRVINM------PQDAVIRGNYDDVMSP 171
Query: 678 STVVK 682
+ +
Sbjct: 172 LNLAR 176
Score = 29.8 bits (67), Expect = 3.1
Identities = 7/56 (12%), Positives = 12/56 (21%)
Query: 387 EYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDT 442
+ I I D D + + K D + + D
Sbjct: 45 TLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQ 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.7 bits (170), Expect = 2e-12
Identities = 105/645 (16%), Positives = 169/645 (26%), Gaps = 234/645 (36%)
Query: 147 SLSLTCSVP---WV-------QFPNHLELMNISRQFNVKVDPSS---LTPGVHNGTIFAF 193
SL VP + QF L + F +P++ L G +
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILP--EPTEGFAADDEPTTPAELV-----GKFLGY 67
Query: 194 DSNKPEKGHVFSVEVTVVKPIVLGSNPSSKPAVSWDQVDFKANTTKHHFVL-VPKEATIA 252
S+ E V + V+ + L + + H + +E
Sbjct: 68 VSSLVEPSKVGQFD-QVLN-LCLTE----------FENCYLEGNDIHALAAKLLQENDTT 115
Query: 253 VLK----IRS--NSLEAQGKFILHCTQHKPKLYMAVEVHKVTLT-------SPTMYIDSE 299
++K I++ + + + L+ AV L + Y + E
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDK--KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-E 172
Query: 300 SRSLSLILIPVIFWLINSLRLNSSHLSFLTSHNTLTNQIQLSSSDS----TNPTMTSSSS 355
R L ++ LI + LS L ++ + NP+ T
Sbjct: 173 LRDLYQTYHVLVGDLIKFS---AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 356 FSITPPIIEFP---------------KWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDS 400
+ ++ PI P G P + L + H +G+V A+ +
Sbjct: 230 YLLSIPI-SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH----SQGLVTAVAIA 284
Query: 401 GVDP------------------GAAGLQVT--SDGKPKVIERYDCGGAG---------DV 431
D G + + P ++E G ++
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 432 DTSTVVK-VDDTNHITGLSGRKLKIPTSWKNPTGDFHIGLKN-----V-----YELY--- 477
V V+ TN +P I L N V LY
Sbjct: 345 TQEQVQDYVNKTNS---------HLP-----AGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 478 ---------PKLLQERIQ-KERKEKLWDPSHRKAQAEAQKNLQNF--IQK--HADAKNLS 523
L Q RI ERK K S+R F + H+
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKF---SNR------------FLPVASPFHSH----- 430
Query: 524 RENKLLKEELESMVESLNNLEKKFNCHDLG-PAYDVVVFHNGDYWCACVDTTETG-DLAA 581
LL + + + L FN D+ P V+ T G DL
Sbjct: 431 ----LLVPASDLINKDLVKNNVSFNAKDIQIP-----VYD-----------TFDGSDL-- 468
Query: 582 CHVLGEYNVTRDF-TSLTP--ADQFNFSINVY-EEGNVLELVGLCSSHGTHVASIAAAYF 637
R S++ D + V E TH+ F
Sbjct: 469 ----------RVLSGSISERIVDCI-IRLPVKWET--------TTQFKATHILD-----F 504
Query: 638 -PDEPEKNGVAPG-AQIISLCIDGK-PKVIERYDCGGAGDVDTST 679
P G A G + DG +VI AG +D +
Sbjct: 505 GP------GGASGLGVLTHRNKDGTGVRVIV------AGTLDINP 537
Score = 50.4 bits (120), Expect = 2e-06
Identities = 57/313 (18%), Positives = 91/313 (29%), Gaps = 112/313 (35%)
Query: 432 DTSTVVK-----VDD-TNHITGLSGRKLKIPTSWKNPTG-DFHIGL---KNVYELYPKLL 481
TS + D+ G S L I NP H G K + E Y ++
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFS--ILDIVI--NNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 482 QERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSR-ENK---LLKEELESMV 537
E I + K E ++ ++ + + LS + L L
Sbjct: 1693 FETIVDGK------LKTEKIFKEINEHSTSYTFRS-EKGLLSATQFTQPALT---LMEKA 1742
Query: 538 ESLNNLEKKFNCHDLGPAYDVVVFHNGDYWCACVDTTETGDLAACHVLGEYNVTRDFTSL 597
+ +L+ K L PA A G H LGEY +L
Sbjct: 1743 -AFEDLKSKG----LIPADATF---------A-------G-----HSLGEY------AAL 1770
Query: 598 T-PADQFNFSINVYEEGNVLELV---GLC-------SSHGTHVASIAAAYFPDEPEKNGV 646
AD + +++E+V G+ G + A +
Sbjct: 1771 ASLADVMSIE-------SLVEVVFYRGMTMQVAVPRDELGRSNYGMIA-----------I 1812
Query: 647 APGAQIISLCIDGKPKVIER-------------YDCGG-----AGD---VDTSTVVKVDD 685
PG S + V+ER Y+ AGD +D TV V +
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD--TVTNVLN 1870
Query: 686 TNHITGLSGRKLK 698
+ + +L+
Sbjct: 1871 FIKLQKIDIIELQ 1883
Score = 45.0 bits (106), Expect = 1e-04
Identities = 55/318 (17%), Positives = 88/318 (27%), Gaps = 128/318 (40%)
Query: 24 ATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQVEKALEWLEKY 83
ATG +++A+ + + F + V KA+ L
Sbjct: 270 ATGHSQGLVTAV----------------------AIAETDSWESF-FVSVRKAITVL--- 303
Query: 84 HAELESKVRFHVTCAGSSSKNKGIHLRVGDQQVPKEVNVSVEP-VFADSDNIVFD---PE 139
F + G+ + P N S+ P + DS P
Sbjct: 304 ---------FFI----------GVR---CYEAYP---NTSLPPSILEDSLENNEGVPSP- 337
Query: 140 IKYNFQMSLSLT-CSVPWVQ---------FPN----HLELMNISRQFNVKVDPSSL---- 181
M LS++ + VQ P + L+N ++ V P SL
Sbjct: 338 ------M-LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 182 --------TPGVHNGTIFAFDSNKPEKGHVFSVEVTVVKPIVLGSNP--SS--KPAVSWD 229
G+ I F K + + F + V P S PA
Sbjct: 391 LTLRKAKAPSGLDQSRI-PFSERKLKFSNRF-LPVAS---------PFHSHLLVPASDLI 439
Query: 230 QVDFKANTTKHHFVLVPKEATIAV--------LKIRSNSLEAQGKFILHCTQHKPKLYMA 281
D K++ K+ I V L++ S S+ + I+ C P
Sbjct: 440 NKDLV----KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER---IVDCIIRLP----- 487
Query: 282 VEVH--KVTLTSPTMYID 297
V T T +D
Sbjct: 488 --VKWETTTQFKATHILD 503
Score = 42.0 bits (98), Expect = 8e-04
Identities = 76/559 (13%), Positives = 151/559 (27%), Gaps = 220/559 (39%)
Query: 10 ETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIR---RALEITAQYIPSVEP--- 63
E ++ G + HA +A + L + I+ A + +
Sbjct: 92 ENCYLEGNDI---HA---LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 64 -----------YAQGFGLLQ--VEKALEWL----EKYHAELESKVRFHVTCAGSSSKNKG 106
A FG Q + E L + YH + ++F +
Sbjct: 146 FRAVGEGNAQLVAI-FGG-QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT-- 201
Query: 107 IHLRVGDQQVPKEVNVSVEPVFADSDNIVFD-----------PEIKYNFQMSLSLTCSVP 155
+ E VF + P+ Y S+P
Sbjct: 202 --------------TLDAEKVFTQ----GLNILEWLENPSNTPDKDY--------LLSIP 235
Query: 156 WVQFPNHLELMNISRQFNVKVDPSSLTPGVHNGTIFAFDSNKPEKGHVFSVEVTVVKPIV 215
+ P + ++ ++ + V TPG E + +V
Sbjct: 236 -ISCP-LIGVIQLA-HYVVTAKLLGFTPG--------------ELRSYLKGATGHSQGLV 278
Query: 216 LGSNPSSKPAVSWDQVDFKANTTKHHFVLVPKEATIAVLKIRSNSLEAQGKFI--LHCTQ 273
+ SW+ F + K I VL F + C +
Sbjct: 279 TAVAIAE--TDSWE--SFFVSVRK----------AITVL------------FFIGVRCYE 312
Query: 274 HKPKLYMAVEVHKVTLTSPTMYIDSESRSLSLILIPVIFWLINSLRLNSSHLSFLTSHNT 333
P + P++ DS + +P S L+ S+L+
Sbjct: 313 AYPNTSL----------PPSILEDSLENNEG---VP-------SPMLSISNLT----QEQ 348
Query: 334 LTNQIQLSSSDSTNPTMTSSSSFSITPPIIEFPKWGLLPKKETGVLN-----VLSKHPEY 388
+ + + + TN + + I ++N V+S P+
Sbjct: 349 VQDYV-----NKTNSHLPAGKQVEI------------------SLVNGAKNLVVSGPPQ- 384
Query: 389 DGRGVVIAI----FDSGVD----PGAAGLQVTSDGKPKVIERYDCGGAGDV--------- 431
G+ + + SG+D P S+ K K R+ V
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPF-------SERKLKFSNRFL-----PVASPFHSHLL 432
Query: 432 -DTSTVVKVDDTNHITGLSGRKLKIP---TSWKNPTG-DFHIGLKNVYE-LYPKLLQERI 485
S ++ D + + + ++IP T G D + ++ E + +++ +
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTF----DGSDLRVLSGSISERIVDCIIRLPV 488
Query: 486 QKERKEKLWD------PSH 498
+ W+ +H
Sbjct: 489 K-------WETTTQFKATH 500
Score = 40.0 bits (93), Expect = 0.003
Identities = 49/300 (16%), Positives = 86/300 (28%), Gaps = 127/300 (42%)
Query: 228 WDQVDFKANTTKHHFVLV------PKEATIAV-----LKIRSNSLEAQGKFILHCTQHKP 276
W++ D + F ++ P TI +IR N
Sbjct: 1646 WNRAD-NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN----------------- 1687
Query: 277 KLYMAVEVHKVTLTSPTMYIDSESRSLSLILIPVIFWLINSLRLNSSHLSFLTSHNTLTN 336
Y A+ +D + ++ IF IN +S+ +F + L +
Sbjct: 1688 --YSAMIFE--------TIVDGKLKTEK------IFKEINE---HSTSYTFRSEKGLL-S 1727
Query: 337 QIQLSSSDSTNPTM--TSSSSFSITPPIIEFPKWGLLPKKET--GVLNVLSKHP--EY-- 388
Q T P + ++F ++ GL+P T G H EY
Sbjct: 1728 ATQ-----FTQPALTLMEKAAFED----LK--SKGLIPADATFAG-------HSLGEYAA 1769
Query: 389 -----------DG------RGVVIAIF---DS---------GVDPGAAGLQVTSDGKPKV 419
RG+ + + D ++PG + + V
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 420 IER-------------YDCGG-----AGD---VDTSTVVKVDDTNHITGLSGRKLKIPTS 458
+ER Y+ AGD +D TV V + + + +L+ S
Sbjct: 1830 VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD--TVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 38.1 bits (88), Expect = 0.010
Identities = 55/391 (14%), Positives = 106/391 (27%), Gaps = 156/391 (39%)
Query: 296 IDSES-RSLSL--------ILIPVIFWLINSLRLNSSHLSFLTSHNTLTNQIQLSSSDST 346
+D+ S R L+L +L+P + + +L F T +T
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASF-FIASQLQEQ---FNKILPEPTEGFAADDEPTT 56
Query: 347 NPTMTSSSSFSITPPIIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDPG- 405
+ F + + + P K VL+ + + F++ G
Sbjct: 57 PAELVGK--F------LGYVSSLVEPSKVGQFDQVLN---------LCLTEFENCYLEGN 99
Query: 406 -----AAGLQVTSDGKP----KVIERYDCGGAGDVDTSTVVKVDDTNHITGLSGRKLKIP 456
AA L +D ++I+ Y ++ R
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYI-------------------TARIMAKRPFDKK 140
Query: 457 TS---WKN-PTGDFHI-----G----------LKNVYELYPKLLQERIQKERKEKLWDPS 497
++ ++ G+ + G L+++Y+ Y L+ + I+
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK----------- 189
Query: 498 HRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVES-LNNLEKKFNCHDLGPAY 556
+ + L I+ DA K+ + L + L N P
Sbjct: 190 ------FSAETLSELIRTTLDA------EKVFTQGLN--ILEWLENPSNT-------P-- 226
Query: 557 DVVVFHNGDYWCACVDTTETGDLAACHV---------LGEYNVTRDFTSLTPADQFNFSI 607
+ DY L + + L Y VT TP + +
Sbjct: 227 ------DKDY------------LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS--- 265
Query: 608 NVYEEGNVLELVGLCSSHGTHVAS---IAAA 635
L G + H + + IA
Sbjct: 266 ---------YLKGA-TGHSQGLVTAVAIAET 286
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A
{Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E*
1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E*
1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E*
1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Length = 281
Score = 65.7 bits (161), Expect = 7e-12
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEP 63
S+ + NGTSM++PH G ALI+S +++ +R +LE T +
Sbjct: 207 STLPGNKYGAYNGTSMASPHVAGAAALILSK----HPNWTNTQVRSSLENTTTKLGD--S 260
Query: 64 YAQGFGLLQVEKALEWLEKYH 84
+ G GL+ V+ A + +H
Sbjct: 261 FYYGKGLINVQAAAQHHHHHH 281
Score = 42.2 bits (100), Expect = 3e-04
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 22/66 (33%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKN-----GVAPGAQIISLCIDGKPKVIERYDCGGAGDVD 676
+SHGTHVA AA N GVAP A + ++ KV+ G+G
Sbjct: 61 NNSHGTHVAGTVAA------LNNSIGVLGVAPSASLYAV------KVL---GADGSG--Q 103
Query: 677 TSTVVK 682
S ++
Sbjct: 104 YSWIIN 109
Score = 32.1 bits (74), Expect = 0.45
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 388 YDGRGVVIAIFDSGVDP 404
Y G V +A+ DSG+D
Sbjct: 21 YTGSNVKVAVIDSGIDS 37
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A
{Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Length = 340
Score = 66.3 bits (162), Expect = 8e-12
Identities = 21/76 (27%), Positives = 33/76 (43%)
Query: 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVE 62
+ + M GTSM+ PH +G AL+ISA + +P ++ L T
Sbjct: 261 TRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRL 320
Query: 63 PYAQGFGLLQVEKALE 78
A G G++ E A+
Sbjct: 321 DRALGSGIVDAEAAVN 336
Score = 40.1 bits (94), Expect = 0.002
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 21/61 (34%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKN------GVAPGAQIISLCIDGKPKVIERYDCGGAGDV 675
S HG+HVA AA N GVA GA+++ + + + G D
Sbjct: 101 SSWHGSHVAGTIAA------VTNNRIGVAGVAYGAKVVPV------RAL---GRCGGYDS 145
Query: 676 D 676
D
Sbjct: 146 D 146
Score = 28.5 bits (64), Expect = 7.4
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 388 YDGRGVVIAIFDSGVDP 404
+ G+ VV+A+ D+G+
Sbjct: 29 FTGQNVVVAVVDTGILH 45
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein
inhibitor, hydrolase; 1.10A {Bacillus licheniformis}
SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A
1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A
2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Length = 274
Score = 64.5 bits (158), Expect = 1e-11
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEP 63
S+ +NGTSM++PH G ALI+S + + S +R L TA Y+ S
Sbjct: 206 STYPTNTYATLNGTSMASPHVAGAAALILS----KHPNLSASQVRNRLSSTATYLGS--S 259
Query: 64 YAQGFGLLQVEKALE 78
+ G GL+ VE A +
Sbjct: 260 FYYGKGLINVEAAAQ 274
Score = 42.5 bits (101), Expect = 2e-04
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 22/66 (33%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKN-----GVAPGAQIISLCIDGKPKVIERYDCGGAGDVD 676
+ HGTHVA AA N GVAP + ++ KV+ + G+G
Sbjct: 60 GNGHGTHVAGTVAA------LDNTTGVLGVAPSVSLYAV------KVL---NSSGSG--S 102
Query: 677 TSTVVK 682
S +V
Sbjct: 103 YSGIVS 108
Score = 31.7 bits (73), Expect = 0.75
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 388 YDGRGVVIAIFDSGVDP 404
+ G V +A+ D+G+
Sbjct: 21 FKGANVKVAVLDTGIQA 37
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 64.5 bits (158), Expect = 2e-11
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEP 63
S+ ++GTSM+ PH G L+ S S +IR A+E TA I
Sbjct: 211 STYPTSTYASLSGTSMATPHVAGVAGLLASQ------GRSASNIRAAIENTADKISGTGT 264
Query: 64 YAQGFGLLQVEKALEW 79
Y G + KA+++
Sbjct: 265 Y-WAKGRVNAYKAVQY 279
Score = 42.1 bits (100), Expect = 4e-04
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVV 681
+ HGTH A IAAA + G AP A I+++ +V+ D G+G + V
Sbjct: 68 GNGHGTHCAGIAAAVTNNSTGIAGTAPKASILAV------RVL---DNSGSG--TWTAVA 116
Query: 682 K 682
Sbjct: 117 N 117
Score = 28.7 bits (65), Expect = 6.6
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 359 TP--PIIEFPKWGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDP 404
TP P ++G + +G G IAI D+GV
Sbjct: 2 TPNDPYFSSRQYGP------QKIQAPQAWDIAEGSGAKIAIVDTGVQS 43
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1
Length = 280
Score = 63.0 bits (154), Expect = 6e-11
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEP 63
S+ + +M+GTSM++PH G AL+ S + IR+A+E TA I
Sbjct: 212 STITGNRYAYMSGTSMASPHVAGLAALLASQ------GRNNIEIRQAIEQTADKISGTGT 265
Query: 64 YAQGFGLLQVEKALEW 79
Y +G + A+ +
Sbjct: 266 Y-FKYGRINSYNAVTY 280
Score = 41.0 bits (97), Expect = 8e-04
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 21/59 (35%)
Query: 625 HGTHVASIAAAYFPDEPEKN------GVAPGAQIISLCIDGKPKVIERYDCGGAGDVDT 677
HGTHVA IAAA E N G+AP +I+++ + + D G+G +
Sbjct: 72 HGTHVAGIAAA------ETNNATGIAGMAPNTRILAV------RAL---DRNGSGTLSD 115
Score = 28.3 bits (64), Expect = 7.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 388 YDGRGVVIAIFDSGVDP 404
G IA+ D+GVD
Sbjct: 28 KGSSGQEIAVIDTGVDY 44
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 63.7 bits (155), Expect = 8e-11
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
GT+++ P +G +ALII + L P L + G G L V
Sbjct: 403 QAGTALATPKVSGALALIID---KYHLEKHPDKAIELLYQHGTSKNNKPFSRYGHGELDV 459
Query: 74 EKALE 78
KAL
Sbjct: 460 YKALN 464
Score = 42.2 bits (99), Expect = 5e-04
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 21/58 (36%)
Query: 623 SSHGTHVASIAAAYFPDEPEKN----GVAPGAQIISLCIDGKPKVIERYDCGGAGDVD 676
HGT V+ +A N GVAP + +V +
Sbjct: 199 KGHGTMVSGQTSA--------NGKLIGVAPNNKFTMY------RVF---GSKKTELLW 239
Score = 30.2 bits (68), Expect = 2.6
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 388 YDGRGVVIAIFDSGVDP 404
IAI D+GV
Sbjct: 143 PKHANTKIAIIDTGVMK 159
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus}
SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A
1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A
1q5p_A* 1st3_A 1c9n_A*
Length = 269
Score = 61.4 bits (150), Expect = 2e-10
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEP 63
S+ +NGTSM+ PH G AL+ + S+S IR L+ TA + S
Sbjct: 201 STYPGSTYASLNGTSMATPHVAGAAALVKQ----KNPSWSNVQIRNHLKNTATSLGSTNL 256
Query: 64 YAQGFGLLQVEKAL 77
Y G GL+ E A
Sbjct: 257 Y--GSGLVNAEAAT 268
Score = 42.1 bits (100), Expect = 3e-04
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 22/66 (33%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKN-----GVAPGAQIISLCIDGKPKVIERYDCGGAGDVD 676
+ HGTHVA AA N GVAP A++ ++ KV+ G+G
Sbjct: 59 GNGHGTHVAGTIAA------LNNSIGVLGVAPSAELYAV------KVL---GASGSG--S 101
Query: 677 TSTVVK 682
S++ +
Sbjct: 102 VSSIAQ 107
Score = 31.0 bits (71), Expect = 1.1
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 388 YDGRGVVIAIFDSGVDP 404
G GV +A+ D+G+
Sbjct: 21 LTGSGVKVAVLDTGIST 37
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A
{Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A
2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Length = 320
Score = 61.6 bits (150), Expect = 2e-10
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGL---------SYSPYSIRRALEIT 54
S+ + + + GT+M+ PH +G VALI +A Q+ S ++R L IT
Sbjct: 232 STYPDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHIT 291
Query: 55 AQYIPSVEPY-AQGFGLLQVEKALE 78
A + G+G+++ A++
Sbjct: 292 ADDLGPTGWDADYGYGVVRAALAVQ 316
Score = 40.1 bits (94), Expect = 0.002
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 22/63 (34%)
Query: 625 HGTHVASIAAAYFPDEPEKN-----GVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTST 679
HGTHV AA N GVAPG QI S+ +V+ D G+G S
Sbjct: 75 HGTHVIGTIAA------LNNDIGVVGVAPGVQIYSV------RVL---DARGSG--SYSD 117
Query: 680 VVK 682
+
Sbjct: 118 IAI 120
Score = 28.5 bits (64), Expect = 8.3
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 389 DGRGVVIAIFDSGVDP 404
+ +A+ D+GVD
Sbjct: 27 SVSVIQVAVLDTGVDY 42
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Length = 347
Score = 61.3 bits (149), Expect = 3e-10
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLLQV 73
+GTS + +G +A + S + ++R L +A PS+ +L
Sbjct: 268 GSGTSEATAIVSGVLAAMTSCNP----RATATELKRTLLESADKYPSLVDKVTEGRVLNA 323
Query: 74 EKALEWLEK 82
EKA+ K
Sbjct: 324 EKAISMFCK 332
Score = 41.2 bits (97), Expect = 8e-04
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 21/59 (35%)
Query: 623 SSHGTHVASIAAAYFPDEPEKN----GVAPGAQIISLCIDGKPKVIERYDCGGAGDVDT 677
HGT +AS+ A+ GV P A I S +VI G
Sbjct: 87 YIHGTAMASLIAS--------RYGIYGVYPHALISSR------RVI---PDGVQDSWIR 128
Score = 33.9 bits (78), Expect = 0.16
Identities = 8/59 (13%), Positives = 15/59 (25%), Gaps = 12/59 (20%)
Query: 388 YDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYD--CGGAGDVDTSTVVKVDDTNH 444
VV+++ DSGV ++ G+ + H
Sbjct: 41 DKNTPVVVSVVDSGVAF-------IGGLSDSEFAKFSFTQDGSPFPVKKS---EALYIH 89
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase;
1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A
2zwo_A
Length = 395
Score = 61.7 bits (150), Expect = 3e-10
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGL---------SYSPYSIRRALEIT 54
S+ + + + GT+M+ PH +G VALI +A Q+ S ++R L IT
Sbjct: 307 STYPDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHIT 366
Query: 55 AQYIPSVEP-YAQGFGLLQVEKALE 78
A + G+G+++ A++
Sbjct: 367 ADDLGPTGWDADYGYGVVRAALAVQ 391
Score = 40.5 bits (95), Expect = 0.002
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 22/63 (34%)
Query: 625 HGTHVASIAAAYFPDEPEKN-----GVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTST 679
HGTHV AA N GVAPG QI S+ +V+ D G+G S
Sbjct: 150 HGTHVIGTIAA------LNNDIGVVGVAPGVQIYSV------RVL---DARGSG--SYSD 192
Query: 680 VVK 682
+
Sbjct: 193 IAI 195
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert
beta barrel domain hydrolase; HET: PMS; 1.40A
{Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Length = 441
Score = 61.3 bits (149), Expect = 5e-10
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSV-E 62
S+ N++ ++ NGTSM+ PH +G L+ S S +R AL TA +
Sbjct: 355 SNQGNQDYEYYNGTSMATPHVSGVATLVWSY----HPECSASQVRAALNATADDLSVAGR 410
Query: 63 PYAQGFGLLQVEKALEWLE 81
G+G++ A +L+
Sbjct: 411 DNQTGYGMINAVAAKAYLD 429
Score = 35.9 bits (83), Expect = 0.043
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 24/68 (35%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKN-----GVAPG--AQIISLCIDGKPKVIERYDCGGAGD 674
++HGTHVA AA N GV P A I + KV + G G
Sbjct: 62 NNAHGTHVAGTIAA------IANNEGVVGVMPNQNANIHIV------KVF---NEAGWG- 105
Query: 675 VDTSTVVK 682
+S++V
Sbjct: 106 -YSSSLVA 112
Score = 28.6 bits (64), Expect = 8.5
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 387 EYDGRGVVIAIFDSGVDP 404
+ I I DSG D
Sbjct: 18 DSQAGNRTICIIDSGYDR 35
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease,
intracellular proteinase regulat; HET: CSX 1PE; 1.56A
{Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Length = 327
Score = 58.9 bits (143), Expect = 2e-09
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISAL-QQQGLSYSPYSIRRALEITAQYIPSVE 62
S+ + ++GT+M+APH G +ALII+ S S I L A I
Sbjct: 236 STYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTA 295
Query: 63 PYAQ-GFGLLQVEKALE 78
GF L + + +
Sbjct: 296 QAEGNGFLTLDLVERIT 312
Score = 42.7 bits (101), Expect = 3e-04
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVV 681
+ HGTHVA AA GVAP A + + K + G+G + +
Sbjct: 83 NNGHGTHVAGTVAAAETGSGVV-GVAPKADLFII------KAL---SGDGSG--EMGWIA 130
Query: 682 K 682
K
Sbjct: 131 K 131
Score = 31.1 bits (71), Expect = 1.3
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 388 YDGRGVVIAIFDSGVDP 404
G G +I + D+G
Sbjct: 38 AKGAGQIIGVIDTGCQV 54
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide,
hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP:
c.41.1.1
Length = 671
Score = 59.7 bits (144), Expect = 2e-09
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEP-YAQGFGLLQ 72
GTSM+APH TG VA+++ + P+ IR+ LE TA + G+GL++
Sbjct: 377 YQGTSMAAPHVTGVVAVLLQKFP----NAKPWQIRKLLENTAFDFNGNGWDHDTGYGLVK 432
Query: 73 VEKALE 78
++ AL+
Sbjct: 433 LDAALQ 438
Score = 44.7 bits (105), Expect = 9e-05
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 18/65 (27%)
Query: 624 SHGTHVASIAAAYFPDEPEKN-----GVAPGAQIISLCIDGKPKVIERYDCGGA-GDVDT 677
S GTHVA AA +K+ GVAPGA+I+ + + + G G V
Sbjct: 199 SAGTHVAGTIAA------KKDGKGIVGVAPGAKIMPI------VIFDDPALVGGNGYVGD 246
Query: 678 STVVK 682
V
Sbjct: 247 DYVAA 251
Score = 32.0 bits (72), Expect = 0.85
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 388 YDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITG 447
G +++A+ D+GVD D + +VI Y + + + T
Sbjct: 151 ASGTNIIVAVVDTGVDGT------HPDLEGQVIAGYRPAF-DEELPAGTDSSYGGSAGTH 203
Query: 448 LSG 450
++G
Sbjct: 204 VAG 206
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus
pyogenes} PDB: 3eif_A*
Length = 926
Score = 58.9 bits (142), Expect = 4e-09
Identities = 37/191 (19%), Positives = 60/191 (31%), Gaps = 45/191 (23%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSP----YSIRRALEITAQYIPSVE------P 63
++GTSMSAP G + L+ + Q +P ++ L +A + + P
Sbjct: 403 LSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSP 462
Query: 64 YAQGFGLLQVEKAL--------EWLEKYHAEL---ESKVRFHVTCAGSSSKNKGIHLRVG 112
QG G + +KA + L K V S K
Sbjct: 463 RQQGAGAVDAKKASAATMYVTDKDNTSSKVHLNNVSDKFEVTVNVHNKSDK--------- 513
Query: 113 DQQVPKEVNVSVEPVFADSDNIVFDPEIKYNFQMSLSLTCSVPWVQFPNHLELMNISRQF 172
P+E+ D F K ++ S ++P N S+Q
Sbjct: 514 ----PQELYYQATVQTDKVDGKHFALAPKVLYETSWQ-KITIP----ANS------SKQV 558
Query: 173 NVKVDPSSLTP 183
V +D S +
Sbjct: 559 TVPIDASRFSK 569
Score = 50.4 bits (120), Expect = 2e-06
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 15/100 (15%)
Query: 586 GEYNVTRDFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKN- 644
+ + +T + N + Y + + + HGTHV+ I + P E ++
Sbjct: 49 EDLEKAKKEHGITYGEWVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPY 108
Query: 645 ---GVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVV 681
G P AQ++ + +V G D +
Sbjct: 109 RLEGAMPEAQLLLM------RV-----EIVNGLADYARNY 137
Score = 41.2 bits (96), Expect = 0.001
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 388 YDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGD 430
G G V+A+ D+G D ++T K + + D A
Sbjct: 14 GKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKK 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 1e-08
Identities = 75/479 (15%), Positives = 138/479 (28%), Gaps = 155/479 (32%)
Query: 183 PGVHNGTIFAFDS--NKPEKG-HVFSVEVT------VVKPIVLGSNPSSKPAVSW-DQVD 232
+GT+ F + +K E+ F EV ++ PI S + +Q D
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 233 FKANT----TKHHFVLVPKEATIAVLKIRSNSLEAQGKFILH--------------CTQH 274
N K++ V + L+ L ++ C +
Sbjct: 118 RLYNDNQVFAKYN---VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 275 KPKLYMAVEVHKVTL---TSP--------TMY--IDSESRSLSLILIPVIFWLINSLRLN 321
K + M ++ + L SP + ID S S + I+S++
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSIQAE 233
Query: 322 SSHLSFLTSHNT----LTN--------------QIQLSSSDSTNPTMTSSSSFSITPPII 363
L + L N +I L++ S+ + T +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV--TDFLSAATTTHISL 291
Query: 364 EFPKWGLLPKKETGVLNVLSK----------------HPEYDGRGVVIAIFDSGVDPGAA 407
+ L P E ++L K +P ++I A
Sbjct: 292 DHHSMTLTPD-EV--KSLLLKYLDCRPQDLPREVLTTNP------RRLSII-------AE 335
Query: 408 GLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDT--NHITGLSGRKL-----------K 454
++ DG + + V+ + + ++ N + RK+
Sbjct: 336 SIR---DG-LATWDNWK-----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 455 IPTS-----WKNPTGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNL 509
IPT W + + + N +L+ L E+ KE + E + L
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVN--KLHKYSLVEKQPKESTISIPS-----IYLELKVKL 439
Query: 510 QNFIQKHADAKNLSRENKLLKEELESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDYWC 568
+N H S+V+ N + K F+ DL P Y Y+
Sbjct: 440 ENEYALHR-----------------SIVDHYN-IPKTFDSDDLIPPYL------DQYFY 474
Score = 35.2 bits (80), Expect = 0.088
Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 26/112 (23%)
Query: 506 QKNLQNFIQKHADAKNLSRENK--LLKEELESMVESLNNLEKK---FNCHDLGPAYDVVV 560
F+ + D K++ K L KEE++ ++ S + + F V
Sbjct: 23 SVFEDAFV-DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 561 F----HNGDY-WCA------CVDTT-ETGDLAACH--------VLGEYNVTR 592
F +Y + + T V +YNV+R
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like
protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP:
c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Length = 310
Score = 55.8 bits (135), Expect = 2e-08
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEP 63
S+ N ++GTSM+ PH +G A I + + S S +R L+ A+ +
Sbjct: 236 STWYNGGYNTISGTSMATPHVSGLAAKIWA----ENPSLSNTQLRSNLQERAKSVDIKGG 291
Query: 64 Y--------AQGFGLLQVE 74
Y A GFG +V+
Sbjct: 292 YGAAIGDDYASGFGFARVQ 310
Score = 45.8 bits (109), Expect = 3e-05
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 12/62 (19%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKN-GVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTV 680
+ HGTHVA A A + GVAP A + + KV+ G+G + +
Sbjct: 68 RNGHGTHVAGTALADGGSDQAGIYGVAPDADLWAY------KVL---LDSGSG--YSDDI 116
Query: 681 VK 682
Sbjct: 117 AA 118
Score = 31.5 bits (72), Expect = 0.94
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 388 YDGRGVVIAIFDSGVDP 404
G G+ IA+ D+GV+
Sbjct: 23 TGGSGINIAVLDTGVNT 39
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus
kodakaraensis, hydrolas protease; 2.00A {Thermococcus
kodakarensis}
Length = 539
Score = 54.1 bits (130), Expect = 1e-07
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIP--S 60
N GT+M+ PH G AL+ LQ S++P ++ AL TA +
Sbjct: 344 MGQPINDYYTAAPGTAMATPHVAGIAALL---LQAHP-SWTPDKVKTALIETADIVKPDE 399
Query: 61 VEPYAQGFGLLQVEKALEW 79
+ A G G + KA +
Sbjct: 400 IADIAYGAGRVNAYKAAYY 418
Score = 46.0 bits (109), Expect = 4e-05
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKN-GVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTV 680
+ HGTHVASIAA K G+APGA+++ + KV+ + G+G S +
Sbjct: 177 DNGHGTHVASIAAGTGAASNGKYKGMAPGAKLVGI------KVL---NGQGSG--SISDI 225
Query: 681 VK 682
+
Sbjct: 226 IN 227
Score = 32.5 bits (74), Expect = 0.45
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 388 YDGRGVVIAIFDSGVDP 404
YDG G+ I I D+G+D
Sbjct: 136 YDGSGITIGIIDTGIDA 152
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation,
psychrotrophic, subtilisin-like proteinase, depentent,
hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Length = 284
Score = 45.7 bits (109), Expect = 2e-05
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
S+ + + ++GTSM+ PH G AL + +P + L A
Sbjct: 206 SAWYDGGYKTISGTSMATPHVAGVAALYLQENN----GLTPLQLTGLLNSRA 253
Score = 42.6 bits (101), Expect = 2e-04
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 17/61 (27%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVV 681
C+ HGTHVA + GVA I+ + +V+ C G+G TS V+
Sbjct: 67 CNGHGTHVAGTIGG------SQYGVAKNVNIVGV------RVL---SCSGSG--TTSGVI 109
Query: 682 K 682
Sbjct: 110 S 110
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K,
subtilase, psychrotrophic, psychrophilic, hydrolase;
1.80A {Serratia SP}
Length = 278
Score = 44.9 bits (107), Expect = 4e-05
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
S +SN T ++GTSM++PH G AL + + + SP + L+ A
Sbjct: 209 SWYTSNSATNTISGTSMASPHVAGVAALYLD----ENPNLSPAQVTNLLKTRA 257
Score = 42.2 bits (100), Expect = 3e-04
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 17/61 (27%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVV 681
C+ HGTHVA GVA ++ + +V+ +C G+G S V+
Sbjct: 69 CNGHGTHVAGTIGG------STYGVAKNVNVVGV------RVL---NCSGSG--SNSGVI 111
Query: 682 K 682
Sbjct: 112 A 112
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding,
inhibitor, hydrolase-hydro inhibitor complex; HET: PMS;
1.95A {Thermus aquaticus}
Length = 276
Score = 44.5 bits (106), Expect = 5e-05
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
+ +S+ TQ +NGTSM+ PH G AL + Q S +P S+ A+ A
Sbjct: 207 AWYTSDTATQTLNGTSMATPHVAGVAALYLE----QNPSATPASVASAILNGA 255
Score = 44.1 bits (105), Expect = 8e-05
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 17/61 (27%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVV 681
C+ HGTHVA GVA + ++ +V+ DC G+G TS V+
Sbjct: 67 CNGHGTHVAGTIGG------VTYGVAKAVNLYAV------RVL---DCNGSG--STSGVI 109
Query: 682 K 682
Sbjct: 110 A 110
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET:
DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus}
SCOP: b.18.1.20 c.41.1.1
Length = 471
Score = 45.1 bits (106), Expect = 7e-05
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 16/88 (18%)
Query: 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVE 62
++ K T+ GTS SAP A G +AL + A + + ++ + T++
Sbjct: 246 TTDLRQKCTESHTGTSASAPLAAGIIALTLEANKN----LTWRDMQHLVVQTSKPAHLNA 301
Query: 63 PYAQ------------GFGLLQVEKALE 78
G+GLL +
Sbjct: 302 DDWATNGVGRKVSHSYGYGLLDAGAMVA 329
Score = 34.3 bits (78), Expect = 0.13
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 388 YDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVD--TSTVVKVDDTNHI 445
+ G G+V++I D G++ D +++D H
Sbjct: 35 FTGHGIVVSILDDGIEKN------HPDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHG 88
Query: 446 TGLSG 450
T +G
Sbjct: 89 TRCAG 93
Score = 31.6 bits (71), Expect = 1.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 623 SSHGTHVASIAAAYFPDEPEKNGVAPGAQIISL 655
+ HGT A AA + GVA A+I +
Sbjct: 85 NRHGTRCAGEVAAVANNGVCGVGVAYNARIGGV 117
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B
3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Length = 546
Score = 44.1 bits (104), Expect = 1e-04
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
+SS + +GTS +A H G A++ L + + +R+ L +
Sbjct: 219 ASSDCSTCFVSQSGTSQAAAHVAGIAAMM---LSAEP-ELTLAELRQRLIHFS 267
Score = 43.0 bits (101), Expect = 3e-04
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 17/61 (27%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVV 681
C SHGTH+A + + GVA GA + SL +V+ +C G G S +
Sbjct: 71 CDSHGTHLAGVVSG------RDAGVAKGASMRSL------RVL---NCQGKG--TVSGTL 113
Query: 682 K 682
Sbjct: 114 I 114
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL
receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Length = 692
Score = 44.2 bits (104), Expect = 1e-04
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 17/61 (27%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVV 681
C SHGTH+A + + GVA GA + SL +V+ +C G G S +
Sbjct: 223 CDSHGTHLAGVVSG------RDAGVAKGASMRSL------RVL---NCQGKG--TVSGTL 265
Query: 682 K 682
Sbjct: 266 I 266
Score = 44.2 bits (104), Expect = 2e-04
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
SS + +GTS +A H G A++ L + + +R+ L +
Sbjct: 372 SSDCSTCFVSQSGTSQAAAHVAGIAAMM---LSAEP-ELTLAELRQRLIHFS 419
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 42.1 bits (98), Expect = 2e-04
Identities = 11/66 (16%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 482 QERIQKERKEKLWDPSHRKAQAE----AQKNLQNFIQKHAD------AKNLSRENKLLKE 531
+E Q++R ++L D + + + E A+K+L+ + Q+ ++ N + ++
Sbjct: 91 REE-QRKRLQEL-DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Query: 532 ELESMV 537
++
Sbjct: 149 PDADII 154
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET:
DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Length = 621
Score = 43.9 bits (103), Expect = 2e-04
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 14 MNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPS----VEPYAQGFG 69
++GTSMS PH TG + + +SP +I+ AL TA + + +A G G
Sbjct: 411 ISGTSMSCPHITGIATYVKTYNPT----WSPAAIKSALMTTASPMNARFNPQAEFAYGSG 466
Query: 70 LLQVEKAL 77
+ KA+
Sbjct: 467 HVNPLKAV 474
Score = 38.5 bits (89), Expect = 0.007
Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 15/80 (18%)
Query: 622 CSSHGTHVASIAAAYF--------PDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAG 673
+ HGTH AS AA G P A+I + KV C
Sbjct: 91 TNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAY------KVCWNDGCSDT- 143
Query: 674 DVDTSTVVKVDDTNHITGLS 693
D+ + + D I LS
Sbjct: 144 DILAAYDDAIADGVDIISLS 163
Score = 29.7 bits (66), Expect = 4.1
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 390 GRGVVIAIFDSGVDP 404
+V+ + D+G+ P
Sbjct: 21 ESNIVVGVLDTGIWP 35
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A
{Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A
2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A
2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A*
3gt4_A* 3l1k_A 3osz_A ...
Length = 279
Score = 42.6 bits (101), Expect = 2e-04
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 17/61 (27%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVV 681
+ HGTH A + GVA Q+ + KV+ D G+G ST++
Sbjct: 66 GNGHGTHCAGTVGS------RTYGVAKKTQLFGV------KVL---DDNGSG--QYSTII 108
Query: 682 K 682
Sbjct: 109 A 109
Score = 41.4 bits (98), Expect = 5e-04
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
S+ T+ ++GTSM+ PH G A +++ + S R + TA
Sbjct: 210 STWIGGSTRSISGTSMATPHVAGLAAYLMTL-----GKTTAASACRYIADTA 256
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET:
NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Length = 649
Score = 43.2 bits (101), Expect = 3e-04
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 13 HMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA-------------QYIP 59
+GTSM+APHA G A+ L+ +SP +IR A+ TA
Sbjct: 421 LESGTSMAAPHAAGIAAM----LKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNK 476
Query: 60 SVEPYAQGFGLLQVEKALEWLEKYHAELESKVRFHVTCAGSSSKNKGI 107
+ P G G + +AL+ Y A + V + + + K I
Sbjct: 477 AATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTI 524
Score = 37.4 bits (86), Expect = 0.015
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 15/82 (18%)
Query: 622 CSSHGTHVASIAAAYF--------PDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAG 673
HGTH ASI A F GVAP A++ K +
Sbjct: 100 TDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVY------KFSFNEGTFTS- 152
Query: 674 DVDTSTVVKVDDTNHITGLSGR 695
D+ + V D + +S
Sbjct: 153 DLIAAMDQAVADGVDMISISYG 174
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle-
degrading protease, nematodes, hydrolase, secreted,
zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A
Length = 279
Score = 42.2 bits (100), Expect = 3e-04
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
S+ T ++GTSM+ PH G A + +G S ++ ++ +
Sbjct: 211 STWIGGRTNTISGTSMATPHIAGLAAYLFGL---EGG--SAGAMCGRIQTLS 257
Score = 41.8 bits (99), Expect = 4e-04
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 17/61 (27%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVV 681
HGTH A + + GVA I + KV+ D G+G S ++
Sbjct: 67 GHGHGTHCAGTIGS------KTWGVAKKVSIFGV------KVL---DDSGSG--SLSNII 109
Query: 682 K 682
Sbjct: 110 A 110
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT
like protease, serine protease; HET: NDG; 1.90A
{Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB:
1r64_A* 1ot5_A*
Length = 503
Score = 40.5 bits (94), Expect = 0.002
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 3 SSSSSNKETQHMNGTSMSAPHATGCVALIISA 34
SS + + + GTS +AP A G L++ A
Sbjct: 257 SSDINGRCSNSHGGTSAAAPLAAGVYTLLLEA 288
Score = 36.2 bits (83), Expect = 0.040
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 344 DSTNPTMTSSSSFSITPPIIEFPK-WGLLPKKETGV-LNVLSKHPE-YDGRGVVIAIFDS 400
S P + SI P+ F + W L+ G +NVL G GVV AI D
Sbjct: 6 SSLLPVKEAEDKLSINDPL--FERQWHLVNPSFPGSDINVLDLWYNNITGAGVVAAIVDD 63
Query: 401 GVD 403
G+D
Sbjct: 64 GLD 66
Score = 32.4 bits (73), Expect = 0.61
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 624 SHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDVDTSTVVKV 683
HGT A AA + GV A+I + +++ + + ++++
Sbjct: 99 YHGTRCAGEIAAKKGNNFCGVGVGYNAKISGI------RIL---SGDITTEDEAASLIYG 149
Query: 684 DDTNHITGLS 693
D N I S
Sbjct: 150 LDVNDIYSCS 159
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
sobria} PDB: 3hjr_A
Length = 600
Score = 40.3 bits (93), Expect = 0.002
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 6 SSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYA 65
+S MNGTS + P +G +AL++SA S +R L +A + +
Sbjct: 324 ASCDYNGVMNGTSSATPSTSGAMALLMSAYP----DLSVRDLRDLLARSATRVDAKHQPV 379
Query: 66 QGFGLLQVEKALEWLEKYH 84
K +
Sbjct: 380 MVSYTSSTGKVRDVKGLEG 398
Score = 31.8 bits (71), Expect = 0.76
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 11/40 (27%)
Query: 623 SSHGTHVASIAAAYFPDEPEKN-----GVAPGAQIISLCI 657
+ HGT V+ I AA N G+AP AQ+ +
Sbjct: 113 TGHGTSVSGIIAA------VDNAIGTKGIAPRAQLQGFNL 146
Score = 31.8 bits (71), Expect = 0.94
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 388 YDGRGVVIAIFDSGVD 403
G GV +A+ D G+
Sbjct: 67 VLGHGVNVAVVDDGLA 82
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 35.4 bits (81), Expect = 0.009
Identities = 13/85 (15%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 462 PTGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQK-HADAK 520
+ + L+ + + L+ + ++ K + + S R + ++ L+ + + +
Sbjct: 17 SVRELNQHLRGLSKEEIIQLK-QRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVE 75
Query: 521 NLSRENKLLKEELESMVESLNNLEK 545
L+ EN +K EL+++ L+
Sbjct: 76 KLASENASMKLELDALRSKYEALQN 100
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 36.7 bits (85), Expect = 0.032
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 481 LQERIQKERKEKLWDPSHRKAQAEAQ-KNLQNFIQKHADAKN-LSRENKLLKEELESMVE 538
L+E+++ E + K A+ + K +++ I D N L++E KLL+E + +
Sbjct: 960 LEEQLE-EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT 1018
Query: 539 SLNNLEKKFN 548
+L E+K
Sbjct: 1019 NLAEEEEKAK 1028
Score = 30.2 bits (68), Expect = 3.0
Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 479 KLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVE 538
++ +K+ E++ + + E +++ Q A+ K + ++ L+E+LE
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQ----LQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 539 SLNNLEK 545
+ L+
Sbjct: 970 ARQKLQL 976
Score = 29.8 bits (67), Expect = 3.5
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 479 KLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQK-HADAKNLSRENKLLKEELESMV 537
LLQE++Q E + R A ++ L+ + + A + ++ L+ E + M
Sbjct: 895 NLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQ 954
Query: 538 ESLNNLEKK 546
+ + +LE++
Sbjct: 955 QQMLDLEEQ 963
Score = 29.8 bits (67), Expect = 4.2
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 481 LQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESL 540
L+ ++ K+ +E A+ E + + +N K + L L+E+LES +
Sbjct: 1086 LKAQLAKKEEEL----QAALARLEDETSQKNNALK--KIRELESHISDLQEDLESEKAAR 1139
Query: 541 NNLEKK 546
N EK+
Sbjct: 1140 NKAEKQ 1145
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily,
SH3-like domain, produc structure, DNA damage, DNA
repair, exonuclease; HET: TMP; 1.50A {Escherichia coli}
SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A*
3hp9_A*
Length = 482
Score = 36.5 bits (83), Expect = 0.032
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 15/78 (19%)
Query: 474 YELYPKLL----QERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLL 529
+P L Q+R + R++ + E LQ +Q++AD +E L
Sbjct: 412 ARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADE----LQMLVQQYAD----DKEKVAL 463
Query: 530 KEELESMVESLNNLEKKF 547
+ L + + +
Sbjct: 464 LKALWQYADE---IVEHH 478
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 35.0 bits (80), Expect = 0.034
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 483 ERIQKERKEKLWDPSHRKAQAEAQKN-LQNFIQKHADA--------KNLSRENKLLKEEL 533
E K +KL + R AE L+ I D K +S E K L++++
Sbjct: 76 EEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKV 135
Query: 534 ESMVESLNNLEKKFN 548
E ++ +LE +
Sbjct: 136 EELLSKNYHLENEVA 150
>1s4n_A Glycolipid 2-alpha-mannosyltransferase; alpha/beta fold,
nucleotide-binding domain, rossmann fold; HET: NAG BMA
MAN NDG; 2.01A {Saccharomyces cerevisiae} SCOP:
c.68.1.16 PDB: 1s4o_A* 1s4p_A*
Length = 348
Score = 35.8 bits (82), Expect = 0.047
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 531 EELESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDY 566
+EL+ ++ S+ +E K N Y V ++ +
Sbjct: 38 KELKGLLSSIKYVENKINKKF---PYPWVFLNDEPF 70
>2kfv_A FK506-binding protein 3; FKBP3-N, isomerase, nucleus,
phosphoprotein, rotamase, structural genomics, PSI-2,
protein structure initiative; NMR {Homo sapiens}
Length = 92
Score = 32.8 bits (74), Expect = 0.069
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 484 RIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNL 543
+ ++ W +++ +K++ F+Q+H L E+KLL ++ N+
Sbjct: 19 SMAAAVPQRAWTVEQLRSEQLPKKDIIKFLQEHGSDSFL-AEHKLL--------GNIKNV 69
Query: 544 EKKFNCHDLGPAYD 557
K N L AY+
Sbjct: 70 AKTANKDHLVTAYN 83
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.9 bits (78), Expect = 0.20
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 479 KLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQK-HADAKNLSRENKLLKEELESMV 537
+ ER++ +E + + E L+ + + + K + K E E +V
Sbjct: 966 RSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLV 1025
Query: 538 ESLNNLEKK 546
L
Sbjct: 1026 SELKEQNTL 1034
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 32.0 bits (72), Expect = 0.31
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 475 ELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELE 534
E K ER ++E EK E Q+ L N + + + L++EL
Sbjct: 72 EKSSKEYLERFRREGNEK-----------EMQRILLNSERLKSRIAEIHESRTKLEQELR 120
Query: 535 SMVESLNNLEKKFN 548
+ ++K+ N
Sbjct: 121 AQASDNREIDKRMN 134
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA
complex, transcription/DNA complex; HET: DNA; 2.00A
{Schizosaccharomyces pombe} SCOP: h.1.3.1
Length = 70
Score = 30.0 bits (67), Expect = 0.36
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 497 SHRKAQAEAQKNLQNFIQK-HADAKNLSRENKLLKEELESMVESLNNL 543
+ RK + + K L+ + + + EN L++++ + E L L
Sbjct: 22 AFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 32.5 bits (73), Expect = 0.56
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 498 HRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEE 532
H AQ +A K LQ F KH + +K+L+
Sbjct: 408 HAMAQVDAWKQLQTFFHKHLGGHEGTIPSKVLEHH 442
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 31.6 bits (71), Expect = 0.76
Identities = 11/64 (17%), Positives = 21/64 (32%)
Query: 483 ERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNN 542
+++E+ S + + IQK RE + L E + E N
Sbjct: 49 LNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQ 108
Query: 543 LEKK 546
++
Sbjct: 109 ANRE 112
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 30.9 bits (69), Expect = 1.0
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 483 ERIQKERKEKLWDPSHRKAQA-EAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLN 541
ER ++ L D R QA E L++ + + ++L + LK+E + + L
Sbjct: 122 ERAKRATIMSLEDFEQRLNQAIERNAFLESELD---EKESLLVSVQRLKDEARDLRQELA 178
Query: 542 NLEKK 546
E++
Sbjct: 179 VRERQ 183
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN
structural genomics of infectious diseases, csgid; HET:
MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Length = 431
Score = 31.3 bits (72), Expect = 1.0
Identities = 11/19 (57%), Positives = 17/19 (89%), Gaps = 1/19 (5%)
Query: 407 AGLQVTSDGKPKVIERYDC 425
AGL +++DG+PKVIE ++C
Sbjct: 275 AGLMISADGQPKVIE-FNC 292
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 30.5 bits (68), Expect = 1.1
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 481 LQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKN-LSRENKLLKEELESMVES 539
LQ ++ ER+++ D +LQ ++ + E K ++ L +
Sbjct: 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133
Query: 540 LNNLEKKFN 548
NNLE N
Sbjct: 134 KNNLEIDLN 142
Score = 29.3 bits (65), Expect = 2.8
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 475 ELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELE 534
EL + K + +K D +A EA++ + +L L+EE++
Sbjct: 52 ELQERNRILENSKSQTDK--DYYQLQAILEAERRDRG--HDSEMIGDLQARITSLQEEVK 107
Query: 535 SMVESLNNLEK 545
+ +L +E
Sbjct: 108 HLKHNLEKVEG 118
>2wt7_B Transcription factor MAFB; transcription, transcription regulation,
nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 2wty_A* 1k1v_A
Length = 90
Score = 29.2 bits (65), Expect = 1.2
Identities = 12/83 (14%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 462 PTGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQK-HADAK 520
+ + L+ + L+ + ++ K + + S R + + + +L+N + +
Sbjct: 7 SVRELNRHLRGFTKDEVIRLK-QKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVE 65
Query: 521 NLSRENKLLKEELESMVESLNNL 543
L +E L E ++ L
Sbjct: 66 QLKQEVSRLARERDAYKVKSEKL 88
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 31.5 bits (70), Expect = 1.3
Identities = 12/108 (11%), Positives = 35/108 (32%), Gaps = 2/108 (1%)
Query: 443 NHITGLSGRKLKIPTSWKNPTGDFHIGLKNVYELYPKLLQERIQKERKEKLWDPSHRKAQ 502
+++ + + + K+ D + +E + ++++ K Q
Sbjct: 563 SNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQ 622
Query: 503 AE--AQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLEKKFN 548
Q+ L IQ + +++ E ++++L F
Sbjct: 623 ESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFV 670
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD
subdomain; structural genomics, oceanospirillum SP.
MED92; 2.10A {Neptuniibacter caesariensis}
Length = 154
Score = 29.9 bits (68), Expect = 1.7
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 509 LQNFIQKHADAKNLSRENKLLKEELESMVESLNNLE 544
+ ++K L EN L+EE E+ + +
Sbjct: 116 VFKVVEKGLQLAFLREENLRLQEETEAKNKQEGHHH 151
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural
genomics, northeast structural GE consortium, NESG,
structural genomics consortium; NMR {Homo sapiens}
Length = 88
Score = 28.2 bits (62), Expect = 2.1
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 494 WDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLEKKFNCHDLG 553
+ + +L ++QK+ADA L R KL + ++ K NC L
Sbjct: 20 HVEQYLGTDELPKNDLITYLQKNADAAFL-RHWKLT--------GTNKSIRKNRNCSQLI 70
Query: 554 PAYD 557
AY
Sbjct: 71 AAYK 74
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.5 bits (65), Expect = 2.5
Identities = 6/62 (9%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 482 QERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHAD------AKNLSRENKLLKEELES 535
++R + + + ++ + +A+K+L+ + Q+ ++ N + ++
Sbjct: 108 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 167
Query: 536 MV 537
++
Sbjct: 168 II 169
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein,
developmental protein, structural protei
phosphorylation, transport, microtubule; 2.10A {Homo
sapiens}
Length = 111
Score = 28.4 bits (63), Expect = 2.7
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 483 ERIQKER---KEKLWD--PSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELE--- 534
+R++ E KEKL K + + +L RE + ++LE
Sbjct: 13 QRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 72
Query: 535 -SMVESLNNLEKKFN 548
+ + SL + E++ N
Sbjct: 73 RATIVSLEDFEQRLN 87
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 29.8 bits (67), Expect = 3.0
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 481 LQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKH-----ADAKNLSRENKLLKEELES 535
+ E + K + + A + +FI +H +LS+ N+ L E +
Sbjct: 4 IGETMAKLGQNTRVNSDQLIQTILADPEVASFISQHHLSQEQINLSLSKFNQFLVERQKY 63
Query: 536 MVESLNNLEKKFNCHD 551
++ + + K +
Sbjct: 64 QLKDPSYIAKGYQPIL 79
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 29.2 bits (65), Expect = 3.9
Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 481 LQERIQKERKEKLWDPSHRKAQA-----EAQKNLQNFIQKHADAKNLSRENKLLKEELES 535
L RIQ +E+L R A A EA+K + ++ +++++ E E
Sbjct: 88 LNRRIQ-LFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146
Query: 536 MVE----SLNNLEKKF 547
++ + ++K+
Sbjct: 147 QLKEAKHIAEDADRKY 162
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 29.4 bits (65), Expect = 4.6
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 498 HRKAQAEAQKNLQNFIQKHADAKNLSRENKL 528
H KAQ +A K + F KH + KL
Sbjct: 392 HSKAQEDAWKQILAFFCKHLGGTQKTAVPKL 422
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.5 bits (63), Expect = 5.1
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Query: 638 PDEPEKNG-VAPGAQIISLCID---GKPKVIERYD-----CGGAGDVDTSTVVKVDDT 686
++ G P I+ C + PK++ER+ C G V + +V DT
Sbjct: 5 ESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLV---DT 59
>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate
deaminase, COF 5'-phosphate, structural genomics; HET:
CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
Length = 701
Score = 29.3 bits (65), Expect = 5.5
Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Query: 495 DPSHRKAQAEAQKNLQNFIQK----HADAKNLSRENKLLKEELESMVESLNNLEKKFNCH 550
D + QK+L FI+ D + R+ L L + ESL+ N
Sbjct: 251 DTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLT--LREVFESLDLTGYDLNVD 308
Query: 551 DLGPAYDVVVFHNGD 565
L D FH D
Sbjct: 309 LLDVHADKSTFHRFD 323
>3jte_A Response regulator receiver protein; structural genomics, nysgrc,
response regulator receiver domain, target 11226E,
PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Length = 143
Score = 27.9 bits (63), Expect = 5.7
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 509 LQNFIQKHADAKNLSRENKLLKEELE 534
L I + K L EN+ + +E
Sbjct: 113 LSIAINNAINRKKLLMENERMTQEGH 138
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 6.3
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 504 EAQ--KNLQNFIQKHAD--AKNLSRENKLLKEELE 534
E Q K LQ ++ +AD A L+ +K +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA-----IKATME 47
>2f4n_A Hypothetical protein MJ1651; conserved hypothetical protein,
mehtanococcus jannaschii, structural genomics, PSI;
2.50A {Methanocaldococcus jannaschii}
Length = 273
Score = 28.5 bits (63), Expect = 7.2
Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 4/106 (3%)
Query: 565 DYWCACVD---TTETGDLAACHVLGEYNVTRDFTSLTPADQFNFSINVYEEGNVLELVGL 621
A +D +E + G Y V D T + + +
Sbjct: 77 SVHVAVIDPTVGSERKSIVIETKSGYYLVGPDNGLFTYVAEKLGIKRIIKIDEERYKPS- 135
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERY 667
+ HG V ++ A +G + + I+R+
Sbjct: 136 STFHGRDVYAVVGAEILINNGYDGEELDEMVKIDETKKRVIHIDRF 181
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 28.2 bits (63), Expect = 8.4
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 509 LQNFIQKHADAKNLSRENKLLKEELESMVESLNNLE 544
+ + D KN EN+ LKE LE + + + +
Sbjct: 11 ISGAVDGVVDLKNTYTENQHLKERLEELAQLESEVA 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,536,093
Number of extensions: 648900
Number of successful extensions: 1874
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1804
Number of HSP's successfully gapped: 134
Length of query: 698
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 598
Effective length of database: 3,909,693
Effective search space: 2337996414
Effective search space used: 2337996414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.2 bits)