RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14141
(698 letters)
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1
{Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Length = 435
Score = 69.3 bits (168), Expect = 5e-13
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSV-E 62
S+ N++ ++ NGTSM+ PH +G L+ S + S +R AL TA +
Sbjct: 355 SNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPE----CSASQVRAALNATADDLSVAGR 410
Query: 63 PYAQGFGLLQVEKALEWLEK 82
G+G++ A +L++
Sbjct: 411 DNQTGYGMINAVAAKAYLDE 430
Score = 37.0 bits (84), Expect = 0.008
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQII 653
++HGTHVA AA + GV P
Sbjct: 62 NNAHGTHVAGTIAAI-ANNEGVVGVMPNQNAN 92
Score = 36.6 bits (83), Expect = 0.011
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 10/65 (15%)
Query: 386 PEYDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHI 445
+ I I DSG D L + + G G+ ++ H
Sbjct: 17 SDSQAGNRTICIIDSGYDRSHNDL------NANNVTGTNNSGTGNWYQPG----NNNAHG 66
Query: 446 TGLSG 450
T ++G
Sbjct: 67 THVAG 71
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens,
Novo/BPN' [TaxId: 1390]}
Length = 281
Score = 63.4 bits (153), Expect = 1e-11
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 1 MFSSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPS 60
S+ + NGTSM++PH G ALI+S +++ +R +LE T +
Sbjct: 204 SIQSTLPGNKYGAYNGTSMASPHVAGAAALILSKHP----NWTNTQVRSSLENTTTKLG- 258
Query: 61 VEPYAQGFGLLQVEKALEWLEKYH 84
+ + G GL+ V+ A + +H
Sbjct: 259 -DSFYYGKGLINVQAAAQHHHHHH 281
Score = 34.5 bits (78), Expect = 0.031
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 388 YDGRGVVIAIFDSGVDPGAAGLQV 411
Y G V +A+ DSG+D L+V
Sbjct: 21 YTGSNVKVAVIDSGIDSSHPDLKV 44
>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43,
N-terminal domain {Bacillus sp. KSM-KP43 [TaxId:
109322]}
Length = 318
Score = 61.0 bits (146), Expect = 1e-10
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 5 SSSNKETQHMNGTSMSAPHATGCVALIISAL-QQQGLSYSPYSIRRALEITAQYIPSVEP 63
++ + + +M GTSM+ P G VA + + +G++ P ++ AL A I P
Sbjct: 242 ANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYP 301
Query: 64 -YAQGFGLLQVEKAL 77
QG+G + ++K+L
Sbjct: 302 NGNQGWGRVTLDKSL 316
Score = 48.0 bits (112), Expect = 2e-06
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 388 YDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITG 447
G+G ++A+ D+G+D G + + K+ Y G + + D H T
Sbjct: 19 LYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNAN-------DTNGHGTH 71
Query: 448 LSGRKLKIPTSWKNPTGDFHIGLKNV 473
++G L ++ K ++ +++
Sbjct: 72 VAGSVLGNGSTNKGMAPQANLVFQSI 97
>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg
[TaxId: 1423]}
Length = 274
Score = 54.6 bits (130), Expect = 1e-08
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 11 TQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGL 70
+NGTSM++PH G ALI+S + S +R L TA Y+ S + G GL
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHP----NLSASQVRNRLSSTATYLGS--SFYYGKGL 266
Query: 71 LQVEKALE 78
+ VE A +
Sbjct: 267 INVEAAAQ 274
Score = 35.3 bits (80), Expect = 0.020
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 388 YDGRGVVIAIFDSGVDPGAAGLQV 411
+ G V +A+ D+G+ L V
Sbjct: 21 FKGANVKVAVLDTGIQASHPDLNV 44
>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans
[TaxId: 93466]}
Length = 671
Score = 55.0 bits (131), Expect = 2e-08
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEP 63
+++ + GTSM+APH TG VA+++ + P+ IR+ LE TA
Sbjct: 367 PATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFP----NAKPWQIRKLLENTAFDFNGNGW 422
Query: 64 -YAQGFGLLQVEKALE 78
+ G+GL++++ AL+
Sbjct: 423 DHDTGYGLVKLDAALQ 438
Score = 36.9 bits (84), Expect = 0.007
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 388 YDGRGVVIAIFDSGVDPGAAGLQ---------VTSDGKPKVIERYDCGGAGDVDTSTVVK 438
G +++A+ D+GVD L+ + P + G AG T+
Sbjct: 151 ASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAA 210
Query: 439 VDDTNHITG 447
D I G
Sbjct: 211 KKDGKGIVG 219
Score = 28.1 bits (61), Expect = 4.5
Identities = 25/100 (25%), Positives = 33/100 (33%), Gaps = 1/100 (1%)
Query: 590 VTRDFTSLTPADQFNFSINVYEEGNVLELVGLCSSHGTHVASIAAAYFPDEPEKNGVAPG 649
V L + EE S GTHVA AA D GVAPG
Sbjct: 165 VDGTHPDLEGQVIAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKK-DGKGIVGVAPG 223
Query: 650 AQIISLCIDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHI 689
A+I+ + I P ++ G V + D +
Sbjct: 224 AKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKV 263
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Length = 269
Score = 53.0 bits (126), Expect = 3e-08
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 8 NKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQG 67
+NGTSM+ PH G AL+ S+S IR L+ TA + S Y G
Sbjct: 205 GSTYASLNGTSMATPHVAGAAALVKQKNP----SWSNVQIRNHLKNTATSLGSTNLY--G 258
Query: 68 FGLLQVEKAL 77
GL+ E A
Sbjct: 259 SGLVNAEAAT 268
Score = 33.8 bits (76), Expect = 0.061
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 388 YDGRGVVIAIFDSGVDP 404
G GV +A+ D+G+
Sbjct: 21 LTGSGVKVAVLDTGIST 37
>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp.,
AK.1 [TaxId: 1409]}
Length = 280
Score = 52.6 bits (125), Expect = 5e-08
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 8 NKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQG 67
+M+GTSM++PH G AL+ S + IR+A+E TA I Y
Sbjct: 216 GNRYAYMSGTSMASPHVAGLAALLASQ------GRNNIEIRQAIEQTADKISGTGTY-FK 268
Query: 68 FGLLQVEKALEW 79
+G + A+ +
Sbjct: 269 YGRINSYNAVTY 280
Score = 31.5 bits (70), Expect = 0.29
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 388 YDGRGVVIAIFDSGVDP 404
G IA+ D+GVD
Sbjct: 28 KGSSGQEIAVIDTGVDY 44
Score = 27.6 bits (60), Expect = 5.4
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 622 CSSHGTHVASIAAAYFPDEPEKNGVAPGAQIISLCIDGKPKVIERYDCGGAGDV 675
++HGTHVA IAAA + G+AP +I+++ + ++R G D+
Sbjct: 69 LNNHGTHVAGIAAAETNNATGIAGMAPNTRILAV------RALDRNGSGTLSDI 116
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris
[TaxId: 2026]}
Length = 279
Score = 52.4 bits (124), Expect = 6e-08
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 12 QHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYAQGFGLL 71
++GTSM+ PH G L+ S S +IR A+E TA I Y G +
Sbjct: 219 ASLSGTSMATPHVAGVAGLLASQ------GRSASNIRAAIENTADKISGTGTY-WAKGRV 271
Query: 72 QVEKALEW 79
KA+++
Sbjct: 272 NAYKAVQY 279
Score = 34.3 bits (77), Expect = 0.035
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 6/37 (16%)
Query: 368 WGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDP 404
+G + +G G IAI D+GV
Sbjct: 13 YGP------QKIQAPQAWDIAEGSGAKIAIVDTGVQS 43
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId:
1421]}
Length = 309
Score = 50.6 bits (119), Expect = 2e-07
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 6 SSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYI------- 58
N ++GTSM+ PH +G A I + S S +R L+ A+ +
Sbjct: 238 WYNGGYNTISGTSMATPHVSGLAAKIWAE----NPSLSNTQLRSNLQERAKSVDIKGGYG 293
Query: 59 -PSVEPYAQGFGLLQV 73
+ YA GFG +V
Sbjct: 294 AAIGDDYASGFGFARV 309
Score = 35.2 bits (79), Expect = 0.019
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 388 YDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITG 447
G G+ IA+ D+GV+ L V + D GA ++ D H T
Sbjct: 23 TGGSGINIAVLDTGVNTSHPDL------VNNVEQCKDFTGATTPINNSC--TDRNGHGTH 74
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 334
Score = 44.8 bits (104), Expect = 2e-05
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
Query: 1 MFSSSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPS 60
+ ++ K T+ GTS SAP A G +AL + A + + + ++ + T++
Sbjct: 243 IVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANK----NLTWRDMQHLVVQTSKPAHL 298
Query: 61 VEP------------YAQGFGLLQVEKALEWLEKY 83
++ G+GLL + + +
Sbjct: 299 NADDWATNGVGRKVSHSYGYGLLDAGAMVALAQNW 333
Score = 34.0 bits (76), Expect = 0.057
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 388 YDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHI 445
+ G G+V++I D G++ L G +D +++D H
Sbjct: 34 FTGHGIVVSILDDGIEKNHPDLA----GNYDPGASFDVNDQDPDPQPRYTQMNDNRHG 87
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 44.0 bits (102), Expect = 3e-05
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 17/89 (19%)
Query: 8 NKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEPYA-- 65
+ + GTS +AP A G L++ A + + ++ ++A +
Sbjct: 254 GRCSNSHGGTSAAAPLAAGVYTLLLEANP----NLTWRDVQYLSILSAVGLEKNADGDWR 309
Query: 66 -----------QGFGLLQVEKALEWLEKY 83
GFG + K +E + +
Sbjct: 310 DSAMGKKYSHRYGFGKIDAHKLIEMSKTW 338
Score = 34.0 bits (76), Expect = 0.054
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 368 WGLLPKKETGV-LNVLSKHPE-YDGRGVVIAIFDSGVDP 404
W L+ G +NVL G GVV AI D G+D
Sbjct: 21 WHLVNPSFPGSDINVLDLWYNNITGAGVVAAIVDDGLDY 59
>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium
album), strain limber [TaxId: 37998]}
Length = 279
Score = 38.2 bits (87), Expect = 0.002
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 8 NKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITA 55
T+ ++GTSM+ PH G A +++ + + S R + TA
Sbjct: 214 GGSTRSISGTSMATPHVAGLAAYLMTLGKT-----TAASACRYIADTA 256
Score = 33.9 bits (76), Expect = 0.050
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 368 WGLLPKKETGVLNVLSKHPEYDGRGVVIAIFDSGVDP 404
WGL T + E G+G + + D+G++
Sbjct: 8 WGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEA 44
>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas
sp., sedolisin [TaxId: 306]}
Length = 369
Score = 35.7 bits (81), Expect = 0.014
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 16/94 (17%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQGLSYSPYSIRRALEITAQYIPSVEP 63
+ + Q + GTS+++P G A + SA + +
Sbjct: 272 LIYNYGQLQQIGGTSLASPIFVGLWARLQSANSNSLGFPAASFYSAISSTPSLVHDVKSG 331
Query: 64 ----------------YAQGFGLLQVEKALEWLE 81
Y G+G L + K ++
Sbjct: 332 NNGYGGYGYNAGTGWDYPTGWGSLDIAKLSAYIR 365
Score = 28.8 bits (63), Expect = 2.2
Identities = 2/20 (10%), Positives = 3/20 (15%)
Query: 385 HPEYDGRGVVIAIFDSGVDP 404
+ I G
Sbjct: 19 SSAPTAANTTVGIITIGGVS 38
>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus
novosp. MN-32, kumamolisin [TaxId: 198803]}
Length = 357
Score = 35.5 bits (80), Expect = 0.018
Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 10/60 (16%)
Query: 388 YDGRGVVIAIFDSGVDPGAAGLQVTSDGKPKVIERYDCGGAGDVDTSTVVKVDDTNHITG 447
DG+G IAI G L + + G +V TN TG
Sbjct: 21 LDGQGQCIAIIALGGGYDETSLA----------QYFASLGVSAPQVVSVSVDGATNQPTG 70
Score = 35.5 bits (80), Expect = 0.019
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 4 SSSSNKETQHMNGTSMSAPHATGCVALIISALQQQ 38
+ ET + GTS AP VA I L +
Sbjct: 264 EVVIDGETTVIGGTSAVAPLFAALVARINQKLGKP 298
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12
(Escherichia coli K-12) [TaxId: 83333]}
Length = 467
Score = 35.3 bits (80), Expect = 0.021
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 467 HIGLKNVYELYPKLL----QERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNL 522
+ +P L Q+R + R++ + E LQ +Q++AD
Sbjct: 398 KLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADE----LQMLVQQYAD---- 449
Query: 523 SRENKLLKEELESMVESL 540
+E L + L + +
Sbjct: 450 DKEKVALLKALWQYADEI 467
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 34.4 bits (79), Expect = 0.038
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 531 EELESMVESLNNLEKKFNCHDLGPAYDVVVFHNGDY 566
+EL+ ++ S+ +E K N Y V ++ +
Sbjct: 29 KELKGLLSSIKYVENKINKKF---PYPWVFLNDEPF 61
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 33.2 bits (75), Expect = 0.045
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 481 LQERIQK--ERKEKLWDPS-HRKAQAEAQKNLQNFIQKHADAK-NLSRENKLLKEELESM 536
+QER Q+ R + + R + E +LQ F + D + + +L ++
Sbjct: 24 IQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKSYED 83
Query: 537 VESLNNLEKKFN 548
++ +K
Sbjct: 84 PTNIQGKYQKHQ 95
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 31.3 bits (70), Expect = 0.34
Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 479 KLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESM 536
K L E+++ +R + L ++ + LQ Q+ + +E++++K E++ +
Sbjct: 246 KQLTEKMENDRVQLL-----KEQERTLALKLQE--QEQLLKEGFQKESRIMKNEIQDL 296
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD,
receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Length = 140
Score = 28.9 bits (64), Expect = 1.0
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 509 LQNFIQKHADAKNLSRENKLLKEELESMVESL 540
L ++ + + L EN+ L+ E+ E L
Sbjct: 108 LVQSARRAEEKRRLVMENRSLRRAAEAASEGL 139
>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 111
Score = 27.3 bits (61), Expect = 2.2
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 487 KERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLEKK 546
K K+ + A AEA K +++ + + L++ + S + K+
Sbjct: 25 KAAKDAI------AADAEASKIFTDYLAFQEEIQKLAQTG---QMPDASFQAKMEGFGKQ 75
Query: 547 FNCHDL 552
+ L
Sbjct: 76 IQGNSL 81
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 28.6 bits (63), Expect = 3.0
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 14/64 (21%)
Query: 507 KNLQNFIQKHADAKNLSRENKLLKEELESMVESL------------NNLEKKFNCHDLGP 554
+ L FI + K+ E K + +EL ++ + K LG
Sbjct: 3 RGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLG- 61
Query: 555 AYDV 558
+D+
Sbjct: 62 -HDI 64
>d2oeqa1 a.281.1.2 (A:3-115) YheA-like protein {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 113
Score = 27.0 bits (60), Expect = 3.2
Identities = 6/66 (9%), Positives = 12/66 (18%), Gaps = 9/66 (13%)
Query: 487 KERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVESLNNLEKK 546
K E + + A + N L +E
Sbjct: 24 KRAYEDV------RRDETAYRMFANVRDIQLRLHEKQMRG---AAILPDEIEQAQKAMAL 74
Query: 547 FNCHDL 552
++
Sbjct: 75 AQQNEK 80
>d1uura2 b.2.5.5 (A:360-576) STAT homologue {Dictyostelium
discoideum [TaxId: 44689]}
Length = 217
Score = 28.0 bits (62), Expect = 3.4
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 280 MAVEVHKVTLTSPTMYIDSESRSLSLILIPVIFWL--INSLRLNSSHLSFLTSHNTLTNQ 337
M + H +PT ++ +S+ + + F L + R S +L F + L N
Sbjct: 49 MICDSHPTNKNNPTTPLEMDSQPIYPATLTAHFPLKFLAGTRKCSVNLKFGVNIRDLDNV 108
Query: 338 IQLSSSDSTNP 348
SD++NP
Sbjct: 109 TTTVESDASNP 119
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus
aureus [TaxId: 1280]}
Length = 122
Score = 26.7 bits (59), Expect = 4.5
Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 486 QKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAK------NLSRENKLLKEELESMVES 539
K + + ++ + + + F+ K N ++ +L +E+E + +
Sbjct: 57 YKSENIYFYSSNIKEDDIKMK-TAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDI 115
Query: 540 LNNLEKK 546
LN++ KK
Sbjct: 116 LNDISKK 122
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 27.7 bits (61), Expect = 4.8
Identities = 10/73 (13%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 479 KLLQERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKEELESMVE 538
+L+ + + K++ R + A+ + + A+ L +E L+ ++++ +
Sbjct: 16 DVLRGYLDYDAKKE------RLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQ 69
Query: 539 SLNNLEKKFNCHD 551
LE +
Sbjct: 70 MKQGLEDVSGLLE 82
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 107
Score = 26.3 bits (58), Expect = 5.5
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 504 EAQKNLQNFIQKHADAKNLSRENKLLKEELESMVES 539
+ Q+ Q + + E + EEL +
Sbjct: 12 QLQQQAQAISVQKQTVEMQINETQKALEELSRAADD 47
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia
coli [TaxId: 562]}
Length = 143
Score = 26.9 bits (59), Expect = 5.6
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 8/54 (14%)
Query: 503 AEAQK----NLQNFIQKHADAK----NLSRENKLLKEELESMVESLNNLEKKFN 548
A K N+ + Q+ A L E K EL+ M L KK
Sbjct: 1 GMADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQ 54
>d2plca_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase C
{Listeria monocytogenes [TaxId: 1639]}
Length = 274
Score = 26.7 bits (58), Expect = 8.4
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 314 LINSLRLNSSHLSFLTSHNTLTNQIQLSSSDSTNPTMTSSSSF 356
L ++ L + LS +H+T++ ++ + + T + S
Sbjct: 10 LPDTTNL--AALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSL 50
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 25.4 bits (56), Expect = 9.0
Identities = 7/49 (14%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 483 ERIQKERKEKLWDPSHRKAQAEAQKNLQNFIQKHADAKNLSRENKLLKE 531
R+ KER + K + ++ ++ + + ++ ++ ++L+E
Sbjct: 14 RRLVKERV------MYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQE 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,570,143
Number of extensions: 122463
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 52
Length of query: 698
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 606
Effective length of database: 1,144,436
Effective search space: 693528216
Effective search space used: 693528216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)