BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14142
(76 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ N TP++LAA+ GHLEV+K L LEAG + + K+G P+H AA+ G L +K +
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ N TP++LAA+ GHLEV+K L LEAG + + K+G P+H AA+ G L +K +
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N TP++LAA+ GHLEV+K L LEAG + + K+G P+H AA+ G L +K +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG 38
N++ N TP++LAA+ GHLEV+K L LEAG
Sbjct: 95 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAG 124
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ N TP++LAA+ GHLEV+K L LEAG + + K+G P+H AA+ G L +K +
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N TP++LAA+ GHLEV+K L LEAG + + K+G P+H AA+ G L +K +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG 38
N++ N TP++LAA+ GHLEV+K L LEAG
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAG 91
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 157
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
M N++ + TP++LAA+EGHLE+++ L L+AG + + KDG P+H AA+ G
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVL-LKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 61 LSCLKWM 67
L ++ +
Sbjct: 81 LEIVEVL 87
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ + TP++LAA+EGHLE+++ L L+AG + + KDG P+H AA+ G L ++ +
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVL-LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
N++ + TP++LAA+EGHLE+++ L L+AG + + K G P A + G
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVL-LKAGADVNAQDKFGKTPFDLAIREG 145
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 21 AAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
AA+ G + ++ L+ G + + KDG P+H AA+ G L ++ +
Sbjct: 9 AARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 157
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
M N++ + TP++LAA+EGHLE+++ L L+AG + + KDG P+H AA+ G
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVL-LKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 61 LSCLKWM 67
L ++ +
Sbjct: 81 LEIVEVL 87
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ + TP++LAA+EGHLE+++ L L+AG + + KDG P+H AA+ G L ++ +
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVL-LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
N++ + TP++LAA+EGHLE+++ L L+AG + + K G P A G
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVL-LKAGADVNAQDKFGKTPFDLAIDNG 145
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 21 AAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
AA+ G + ++ L+ G + + KDG P+H AA+ G L ++ +
Sbjct: 9 AARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
M N++ + TP++LAA+EGHLE+++ L L+AG + + KDG P+H AA+ G
Sbjct: 34 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVL-LKAGADVNAKDKDGYTPLHLAAREGH 92
Query: 61 LSCLKWM 67
L ++ +
Sbjct: 93 LEIVEVL 99
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ + TP++LAA+EGHLE+++ L L+AG + + KDG P+H AA+ G L ++ +
Sbjct: 74 NAKDKDGYTPLHLAAREGHLEIVEVL-LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDG 48
N++ + TP++LAA+EGHLE+++ L L+AG + + K G
Sbjct: 107 NAKDKDGYTPLHLAAREGHLEIVEVL-LKAGADVNAQDKFG 146
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 21 AAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
AA+ G + ++ L + G + + KDG P+H AA+ G L ++ +
Sbjct: 21 AARAGQDDEVRIL-MANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 66
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ + TP++LAA+ GH E++K L L G + R+KDG P H A + G +K +
Sbjct: 36 NARSKDGNTPLHLAAKNGHAEIVKLL-LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Query: 68 EHRPA 72
+ + A
Sbjct: 95 DAKGA 99
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
TP++ AA+ GH E +K L L G + R+KDG P+H AA+ G +K
Sbjct: 11 TPLHNAAKNGHAEEVKKL-LSKGADVNARSKDGNTPLHLAAKNGHAEIVK 59
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLV-LEAGGSLYVRAKDGMAPIHAAAQMG 59
+ Y SAN++ VTP++LAAQEGH E++ L+ +A G+L K G+ P+H AQ G
Sbjct: 232 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL--GNKSGLTPLHLVAQEG 289
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP+++AA+ GH EV K+L L+ + +AKD P+H AA++G + +K +
Sbjct: 49 TPLHMAARAGHTEVAKYL-LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 99
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA 72
TP+++AA+EGH+E + +LE S K G P+H AA+ G + + + R A
Sbjct: 115 TPLHIAAREGHVETV-LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
N TP+++AA++ +EV + L L+ GGS + G+ P+H AAQ G
Sbjct: 211 NGYTPLHIAAKQNQVEVARSL-LQYGGSANAESVQGVTPLHLAAQEG 256
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 7 ANSQMDND--VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCL 64
AN + N +TP++L AQEGH+ V L+ + G + + G P+H A+ G + +
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGNIKLV 327
Query: 65 KWM 67
K++
Sbjct: 328 KFL 330
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N+ N +TP+++A +L+++K L L GGS + A +G P+H AA+ + + +
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLL-LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
TP+++A+ G+++++KFL L+ + + K G +P+H AAQ G
Sbjct: 313 TPLHVASHYGNIKLVKFL-LQHQADVNAKTKLGYSPLHQAAQQG 355
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
+ ++ N++ +P++ AAQ+GH +++ L L+ G S + DG P+ A ++G
Sbjct: 331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL-LKNGASPNEVSSDGTTPLAIAKRLGY 389
Query: 61 LSCLKWME 68
+S ++
Sbjct: 390 ISVTDVLK 397
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCL 64
N++ +D TP++ AA+ GH ++K L LE + + G P+H AA+ G + +
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLL-LENNANPNLATTAGHTPLHIAAREGHVETV 129
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
+TP+++A+ GHL ++K L L+ G S V P+H AA+ G K++
Sbjct: 15 LTPLHVASFMGHLPIVKNL-LQRGASPNVSNVKVETPLHMAARAGHTEVAKYL 66
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP+++AA+ G + V + L LE K+G+ P+H A L +K +
Sbjct: 148 TPLHVAAKYGKVRVAELL-LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
VTP++LAA GHLEV++ L L+ G + +G P+H AA +G L ++ +
Sbjct: 81 VTPLHLAADRGHLEVVEVL-LKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP++LAA GHLE+++ L L+ G + G+ P+H AA G L ++ +
Sbjct: 49 TPLHLAAYFGHLEIVEVL-LKNGADVNADDSLGVTPLHLAADRGHLEVVEVL 99
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDG 48
N+ N TP++LAA GHLE+++ L L+ G + + K G
Sbjct: 107 NANDHNGFTPLHLAANIGHLEIVEVL-LKHGADVNAQDKFG 146
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ + TP++ AA+EGH E++K L+ G + + DG P+H AA+ G +K +
Sbjct: 64 NAKDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N+ + TP++ AA+EGH E++K L+ G + + DG P+H AA+ G +K +
Sbjct: 31 NASDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 89
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ + TP++ AA+EGH E++K L+ G + DG P+ A + G +K +
Sbjct: 97 NAKDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Query: 68 E 68
E
Sbjct: 156 E 156
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 21 AAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
AA+ G+ + +K L+ E G + DG P+H AA+ G +K +
Sbjct: 11 AAENGNKDRVKDLI-ENGADVNASDSDGRTPLHYAAKEGHKEIVKLL 56
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ + TP++LAA+ GH EV+K L L G + DG P+H AA+ G +K +
Sbjct: 64 NAKDSDGKTPLHLAAENGHKEVVKLL-LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP++LAA+ GH EV+K L L G + DG P+H AA+ G +K +
Sbjct: 39 TPLHLAAENGHKEVVKLL-LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ + TP++LAA+ GH EV+K L L G DG P+ A + G +K +
Sbjct: 97 NAKDSDGKTPLHLAAENGHKEVVKLL-LSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Query: 68 E 68
E
Sbjct: 156 E 156
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 21 AAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
AA+ G+ + +K L LE G + DG P+H AA+ G +K +
Sbjct: 11 AAENGNKDRVKDL-LENGADVNASDSDGKTPLHLAAENGHKEVVKLL 56
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ + TP++ AA+ GH EV+K L+ G + + DG P+H AA+ G +K +
Sbjct: 64 NAKDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP++ AA+ GH EV+K L+ G + + DG P+H AA+ G +K +
Sbjct: 39 TPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 89
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ + TP++ AA+ GH EV+K L+ G + DG P+ A + G +K +
Sbjct: 97 NAKDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Query: 68 E 68
E
Sbjct: 156 E 156
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 21 AAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
AA+ G+ + +K L+ E G + DG P+H AA+ G +K +
Sbjct: 11 AAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLL 56
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
M N+ D VTP++LAA+ GHLE+++ L L+ G + R G P+H AA +G
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL-LKHGADVNARDIWGRTPLHLAATVGH 92
Query: 61 LSCLK 65
L ++
Sbjct: 93 LEIVE 97
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDG 48
TP++LAA GHLE+++ L LE G + + K G
Sbjct: 82 TPLHLAATVGHLEIVEVL-LEYGADVNAQDKFG 113
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
+TP++LAA GHLE+++ L L+ G + DG P+H AA+ G L ++ +
Sbjct: 81 ITPLHLAAATGHLEIVEVL-LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
DND TP++LAA GHLE+++ L L+ G + G+ P+H AA G L ++ +
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVL-LKNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 20/24 (83%), Gaps = 1/24 (4%)
Query: 12 DNDV-TPVYLAAQEGHLEVLKFLV 34
DND TP++LAA+ GHLE+++ L+
Sbjct: 110 DNDGHTPLHLAAKYGHLEIVEVLL 133
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
VTP++LAA+ GHLE+++ L L+ G + G P+H AA+ G L ++ +
Sbjct: 81 VTPLHLAARRGHLEIVEVL-LKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP++LAA GHLE+++ L L+ G + + G+ P+H AA+ G L ++ +
Sbjct: 49 TPLHLAAHFGHLEIVEVL-LKNGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDG 48
TP++LAA+ GHLE+++ L L+ G + + K G
Sbjct: 115 TPLHLAAKRGHLEIVEVL-LKNGADVNAQDKFG 146
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
TP++LAA GHLE+++ L L+ G + DGM P+H AA+ G L ++
Sbjct: 82 TPLHLAAYWGHLEIVEVL-LKNGADVNAMDSDGMTPLHLAAKWGYLEIVE 130
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
M N+ + TP++LAA GHLE+++ L L+ G + G P+H AA G
Sbjct: 34 MANGADVNAADNTGTTPLHLAAYSGHLEIVEVL-LKHGADVDASDVFGYTPLHLAAYWGH 92
Query: 61 LSCLK 65
L ++
Sbjct: 93 LEIVE 97
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 23/27 (85%), Gaps = 1/27 (3%)
Query: 9 SQMDND-VTPVYLAAQEGHLEVLKFLV 34
+ MD+D +TP++LAA+ G+LE+++ L+
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLL 133
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ + TP++ AA+ GH E++K L L G + DG P+H AA+ G +K +
Sbjct: 64 NAKDSDGRTPLHYAAENGHKEIVKLL-LSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP++ AA+ GH E++K L L G + DG P+H AA+ G +K +
Sbjct: 39 TPLHYAAENGHKEIVKLL-LSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 89
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ + TP++ AA+ GH E++K L L G DG P+ A + G +K +
Sbjct: 97 NAKDSDGRTPLHYAAENGHKEIVKLL-LSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Query: 68 E 68
E
Sbjct: 156 E 156
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 21 AAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
AA+ G+ + +K L LE G DG P+H AA+ G +K +
Sbjct: 11 AAENGNKDRVKDL-LENGADPNASDSDGRTPLHYAAENGHKEIVKLL 56
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
TP++LAA GHLE+++ L L+ G + + +G+ P+H AA G L ++
Sbjct: 82 TPLHLAAHFGHLEIVEVL-LKNGADVNAKDDNGITPLHLAANRGHLEIVE 130
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV 34
N++ DN +TP++LAA GHLE+++ L+
Sbjct: 107 NAKDDNGITPLHLAANRGHLEIVEVLL 133
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
TP++LAA GHLE+++ L L+ G + G P+H AA G L ++
Sbjct: 49 TPLHLAAYWGHLEIVEVL-LKNGADVNAYDTLGSTPLHLAAHFGHLEIVE 97
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
M N+ D TP++LAA GH E+++ L L+ G + R DG P+H AA G
Sbjct: 34 MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVL-LKHGADVNARDTDGWTPLHLAADNGH 92
Query: 61 LSCLK 65
L ++
Sbjct: 93 LEIVE 97
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
TP++LAA GHLE+++ L L+ G + + G+ P+H AA G L ++
Sbjct: 82 TPLHLAADNGHLEIVEVL-LKYGADVNAQDAYGLTPLHLAADRGHLEIVE 130
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ Y N+Q +TP++LAA GHLE+++ L+
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
M N+ D VTP++LAA+ GHLE+++ L L+ G + G P+H AA +G
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL-LKHGADVNASDSWGRTPLHLAATVGH 92
Query: 61 LSCLK 65
L ++
Sbjct: 93 LEIVE 97
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDG 48
TP++LAA GHLE+++ L LE G + + K G
Sbjct: 82 TPLHLAATVGHLEIVEVL-LEYGADVNAQDKFG 113
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
+ Y N+ + TP++LAA GHLE+++ L L+ G + + +G P+H AA G
Sbjct: 67 LKYGADVNAWDNYGATPLHLAADNGHLEIVEVL-LKHGADVNAKDYEGFTPLHLAAYDGH 125
Query: 61 LSCLK 65
L ++
Sbjct: 126 LEIVE 130
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
TP++LAA+ GHLE+++ L L+ G + G P+H AA G L ++
Sbjct: 49 TPLHLAAKTGHLEIVEVL-LKYGADVNAWDNYGATPLHLAADNGHLEIVE 97
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 16 TPVYLAAQEGHLEVLKFLV 34
TP++LAA +GHLE+++ L+
Sbjct: 115 TPLHLAAYDGHLEIVEVLL 133
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSC 63
+++AN + N TP++LAA HLE+++ L L+ G + DG P+H AA G L
Sbjct: 39 DVNANDRKGN--TPLHLAADYDHLEIVEVL-LKHGADVNAHDNDGSTPLHLAALFGHLEI 95
Query: 64 LKWM 67
++ +
Sbjct: 96 VEVL 99
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLV 34
DND TP++LAA GHLE+++ L+
Sbjct: 77 DNDGSTPLHLAALFGHLEIVEVLL 100
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQM 58
M N+ D VTP++LAA+ GHLE+++ L L+ G V A D G P+H AA +
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL-LKHGAD--VNASDIWGRTPLHLAATV 90
Query: 59 GCLSCLK 65
G L ++
Sbjct: 91 GHLEIVE 97
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDG 48
TP++LAA GHLE+++ L LE G + + K G
Sbjct: 82 TPLHLAATVGHLEIVEVL-LEYGADVNAQDKFG 113
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
M N+ DN +TP++LAA G LE+++ L L+ G + G+ P+H AA G
Sbjct: 26 MANGADVNATDDNGLTPLHLAAANGQLEIVEVL-LKNGADVNASDSAGITPLHLAAYDGH 84
Query: 61 LSCLKWM 67
L ++ +
Sbjct: 85 LEIVEVL 91
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
+TP++LAA +GHLE+++ L L+ G + + G P+H AA G L ++ +
Sbjct: 73 ITPLHLAAYDGHLEIVEVL-LKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
M N+ ++ +TP++LAAQ GHLE+++ L L+ G + G+ P+H AA G
Sbjct: 34 MANGADVNALDEDGLTPLHLAAQLGHLEIVEVL-LKYGADVNAEDNFGITPLHLAAIRGH 92
Query: 61 LSCLKWM 67
L ++ +
Sbjct: 93 LEIVEVL 99
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ Y N++ + +TP++LAA GHLE+++ L+
Sbjct: 67 LKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLL 100
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 21 AAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
AA+ G + ++ L + G + +DG+ P+H AAQ+G L ++ +
Sbjct: 21 AARAGQDDEVRIL-MANGADVNALDEDGLTPLHLAAQLGHLEIVEVL 66
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
M N++ D+ TP++LAA +GHLE+++ L L+ G + K G P+H AA G
Sbjct: 34 MANGADVNAEDDSGKTPLHLAAIKGHLEIVEVL-LKHGADVNAADKMGDTPLHLAALYGH 92
Query: 61 LSCLKWM 67
L ++ +
Sbjct: 93 LEIVEVL 99
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP++LAA GHLE+++ L L+ G + G P+H AA G L ++ +
Sbjct: 82 TPLHLAALYGHLEIVEVL-LKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 16 TPVYLAAQEGHLEVLKFLV 34
TP++LAA GHLE+++ L+
Sbjct: 115 TPLHLAADAGHLEIVEVLL 133
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP++LAA+ GHLE+++ L L+ G + G P+H AA G L ++ +
Sbjct: 82 TPLHLAAKRGHLEIVEVL-LKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP++LAA+ GHLE+++ L L+ G + G P+H AA+ G L ++ +
Sbjct: 49 TPLHLAARVGHLEIVEVL-LKNGADVNALDFSGSTPLHLAAKRGHLEIVEVL 99
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 16 TPVYLAAQEGHLEVLKFLV 34
TP++LAA GHLE+++ L+
Sbjct: 115 TPLHLAADTGHLEIVEVLL 133
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 17 PVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWME 68
P++LA QEGH V+ FL E+ L+ R G+ P+ A Q G + ++
Sbjct: 104 PIHLAVQEGHTAVVSFLAAES--DLHRRDARGLTPLELALQRGAQDLVDILQ 153
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 17 PVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWME 68
P++LA QEGH V+ FL E+ L+ R G+ P+ A Q G + ++
Sbjct: 110 PIHLAVQEGHTAVVSFLAAES--DLHRRDARGLTPLELALQRGAQDLVDILQ 159
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
+ Y N+ + TP++LAA GHLE+++ L L+ G + G P+H AA+ G
Sbjct: 67 LKYAADVNASDKSGWTPLHLAAYRGHLEIVEVL-LKYGADVNAMDYQGYTPLHLAAEDGH 125
Query: 61 LSCLK 65
L ++
Sbjct: 126 LEIVE 130
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+TP++L GHLE+++ L L+ + K G P+H AA G L ++
Sbjct: 48 ITPLHLVVNNGHLEIIEVL-LKYAADVNASDKSGWTPLHLAAYRGHLEIVE 97
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
TP++LAA++GHLE+++ L L+ G + + K G + G
Sbjct: 115 TPLHLAAEDGHLEIVEVL-LKYGADVNAQDKFGKTAFDISIDNG 157
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAA 55
Y+ S N Q TP++LA E +E KFLV + G S+Y+ K+ P+ A
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVA 212
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 4 EMSANSQMDNDV-TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
+ S ++ D D T ++ A GH E+++FL L+ G + + G +P+H AA G
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFL-LQLGVPVNDKDDAGWSPLHIAASAG 84
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAA 55
Y+ S N Q TP++LA E +E KFLV + G S+Y+ K+ P+ A
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVA 212
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 4 EMSANSQMDNDV-TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
+ S ++ D D T ++ A GH E+++FL L+ G + + G +P+H AA G
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFL-LQLGVPVNDKDDAGWSPLHIAASAG 84
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
Length = 154
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP+++AA GHLE+++ L L G + +G P+H AA +G L ++ +
Sbjct: 37 TPLHMAAAVGHLEIVEVL-LRNGADVNAVDTNGTTPLHLAASLGHLEIVEVL 87
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N+ N TP++LAA GHLE+++ L L+ G + + G+ P++ AA G L ++ +
Sbjct: 62 NAVDTNGTTPLHLAASLGHLEIVEVL-LKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
+ Y N++ +TP+YLAA GHLE+++ L L+ G + + K G + +G
Sbjct: 88 LKYGADVNAKDATGITPLYLAAYWGHLEIVEVL-LKHGADVNAQDKFGKTAFDISIDIG 145
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDG 48
N TP++LAA+ GHLEV+K L LEAG + + K G
Sbjct: 38 NGSTPLHLAARNGHLEVVKLL-LEAGADVNAQDKFG 72
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 21 AAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
AA+ G + ++ L+ G + + K+G P+H AA+ G L +K +
Sbjct: 13 AARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLL 58
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
M N++ + +TP+YLA GHLE+++ L L+ G + G P+H AA +G
Sbjct: 34 MANGADVNAKDEYGLTPLYLATAHGHLEIVEVL-LKNGADVNAVDAIGFTPLHLAAFIGH 92
Query: 61 LSC 63
L
Sbjct: 93 LEI 95
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDG 48
N TP++LAA+ GHLEV+K L LEAG + + K G
Sbjct: 56 NGSTPLHLAARNGHLEVVKLL-LEAGADVXAQDKFG 90
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 9 SQMDNDVTPVYL-AAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
S M +D+ L AA+ G + ++ L+ G + + K+G P+H AA+ G L +K +
Sbjct: 18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLL 76
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 8 NSQMDNDV-------TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
NS NDV T +++AA +G+ EVLK L+ +A + ++ DG P+HAAA G
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI-QARYDVNIKDYDGWTPLHAAAHWG 243
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
+T ++ A + +++++KFLV E G ++ +G P+HAAA G L +++
Sbjct: 74 LTALHQACIDDNVDMVKFLV-ENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N ++ P++ AA G LE+L+FL+L+ G + K + P+ +A G +SC+K
Sbjct: 27 DVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVSCVK 85
Query: 66 WMEHRPAVK 74
+ + A K
Sbjct: 86 LLLSKGADK 94
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex
With V-1
Length = 123
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N ++ P++ AA G LE+L+FL+L+ G + K + P+ +A G +SC+K
Sbjct: 32 DVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVSCVK 90
Query: 66 WMEHRPAVK 74
+ + A K
Sbjct: 91 LLLSKGADK 99
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 17 PVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWME 68
P++LA +EGH V+ FL E+ L+ R G+ P+ A Q G + + ++
Sbjct: 112 PIHLAIREGHSSVVSFLAPES--DLHHRDASGLTPLELARQRGAQNLMDILQ 161
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
+TP+ LAA GHLE+++ L L+ G + +G P+H AA G L ++ +
Sbjct: 81 MTPLRLAALFGHLEIVEVL-LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP++LAA GHLE+++ L L+ G + GM P+ AA G L ++ +
Sbjct: 49 TPLHLAAFNGHLEIVEVL-LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDG 48
TP++LAA GHLE+++ L L+ G + + K G
Sbjct: 115 TPLHLAAMFGHLEIVEVL-LKNGADVNAQDKFG 146
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 17 PVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWME 68
P++LA +EGH V+ FL E+ L+ R G+ P+ A Q G + + ++
Sbjct: 110 PIHLAIREGHSSVVSFLAPES--DLHHRDASGLTPLELARQRGAQNLMDILQ 159
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
+TP++LAA GHLE+++ L L+ G + G P+H AA +G L ++ +
Sbjct: 48 LTPLHLAATYGHLEIVEVL-LKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP++LAA GHLE+++ L L+ G + G P+H AA MG L ++ +
Sbjct: 82 TPLHLAALIGHLEIVEVL-LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDG 48
TP++LAA GHLE+++ L L+ G + + K G
Sbjct: 115 TPLHLAAIMGHLEIVEVL-LKHGADVNAQDKFG 146
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP++LAA GHLE+++ L L+ G + G P+H AA G L ++ +
Sbjct: 82 TPLHLAAMTGHLEIVEVL-LKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N+ + +TP++LAA GHLE+++ L L+ G + G P+H AA G L ++ +
Sbjct: 41 NAVDNTGLTPLHLAAVSGHLEIVEVL-LKHGADVDAADVYGFTPLHLAAMTGHLEIVEVL 99
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 16 TPVYLAAQEGHLEVLKFLV 34
TP++LAA EGHLE+++ L+
Sbjct: 115 TPLHLAADEGHLEIVEVLL 133
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An
Anti-Ige Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An
Anti-Ige Inhibitor
Length = 135
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPAVKL 75
TP++LAA GHLE+++ L L+ G + G P+H AA W +H V++
Sbjct: 49 TPLHLAAMLGHLEIVEVL-LKNGADVNATGNTGRTPLHLAA---------WADHLEIVEV 98
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 33.9 bits (76), Expect = 0.024, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
+ Q ++ TP+ LAAQEG +EV+ +L+ + V A D H A Q+
Sbjct: 307 DKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATD-----HTARQLA 353
Score = 33.1 bits (74), Expect = 0.046, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMEHRPA 72
T ++ AAQ + ++K+LV E G + + +DG PI AAQ G + + ++ + A
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
D +T ++ A GH E++KFLV + G ++ DG P+H AA + K++
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP++LAA GHLE+++ L L+ G + G P+H AA MG L ++ +
Sbjct: 82 TPLHLAALIGHLEIVEVL-LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
+TP++LAA GHLE+++ L L+ G + G P+H AA +G L ++ +
Sbjct: 48 LTPLHLAATYGHLEIVEVL-LKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDG 48
TP++LAA GHLE+++ L L+ G + + K G
Sbjct: 115 TPLHLAAIMGHLEIVEVL-LKHGADVNAQDKFG 146
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
D +T ++ A GH E++KFLV + G ++ DG P+H AA + K++
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
+P++LAAQ GH + L L AG S R K P+H AA G
Sbjct: 35 TSPLHLAAQYGHFSTTEVL-LRAGVSRDARTKVDRTPLHMAASEG 78
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 5 MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQ 57
+S +++ D TP+++AA EGH +++ L L+ G V AKD M +H A +
Sbjct: 58 VSRDARTKVDRTPLHMAASEGHANIVEVL-LKHGAD--VNAKDMLKMTALHWATE 109
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDG 48
M N++ + TP++LAA+EGHLE+++ L L+AG + + K G
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVL-LKAGADVNAQDKFG 68
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 21 AAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
AA+ G + ++ L+ G + + KDG P+H AA+ G L ++ +
Sbjct: 9 AARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
+M N Q D TP+ A + H++++K L L G + +R + +H AA GC+
Sbjct: 101 QMDVNCQDDGGWTPMIWATEYKHVDLVKLL-LSKGSDINIRDNEENICLHWAAFSGCVD 158
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
TP+ AA+ HLE +K+L+ +AG + + +G +H AA+ G
Sbjct: 46 TPLMEAAENNHLEAVKYLI-KAGALVDPKDAEGSTCLHLAAKKG 88
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPI 52
T ++LAA++GH EV+++L+ + G + V +D G P+
Sbjct: 79 TCLHLAAKKGHYEVVQYLL--SNGQMDVNCQDDGGWTPM 115
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ ++ N + + P++LAA+EGHL V++FLV
Sbjct: 90 LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ ++ N + + P++LAA+EGHL V++FLV
Sbjct: 90 LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ ++ N + + P++LAA+EGHL V++FLV
Sbjct: 90 LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ ++ N + + P++LAA+EGHL V++FLV
Sbjct: 90 LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With
Elonginb And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With
Elonginb And Elonginc
Length = 261
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+D +P++ AA GH L+ L+ + G ++ + D ++P+H A G LSC+K
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVK 53
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 1 MTYEMSANSQMDNDV-TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
+ + A+ Q ++D+ +P++ AA+ GH+E + L+ GG++ + P++ A +
Sbjct: 87 LLLQHGASVQPESDLASPIHEAARRGHVECVNSLI-AYGGNIDHKISHLGTPLYLACENQ 145
Query: 60 CLSCLK 65
+C+K
Sbjct: 146 QRACVK 151
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 17/18 (94%)
Query: 17 PVYLAAQEGHLEVLKFLV 34
P++LAA+EGHL V++FLV
Sbjct: 106 PLHLAAKEGHLRVVEFLV 123
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+D +P++ AA GH L+ L+ + G ++ + D ++P+H A G LSC+K
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVK 109
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 15 VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
+TP++LAA HLE+++ L L+ G + G P+H A G L ++ +
Sbjct: 48 LTPLHLAAMNDHLEIVEVL-LKNGADVNAIDAIGETPLHLVAMYGHLEIVEVL 99
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
D + +++AA++G + ++ L+ E G S ++ + G +H A + GC+ K++
Sbjct: 18 DENXEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
N Q + TP++LA E+ + L L AG +R G P+H A + GCL+
Sbjct: 36 NFQNNLQQTPLHLAVITNQPEIAEAL-LGAGCDPELRDFRGNTPLHLACEQGCLA 89
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 7 ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
ANSQ + TP++ A + V + L+ +L R DG P+ AA++
Sbjct: 77 ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Score = 28.9 bits (63), Expect = 0.81, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ + + ++Q D D TP++LAA+EG E K L+
Sbjct: 171 LMHHANRDAQDDKDETPLFLAAREGSYEASKALL 204
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 28.9 bits (63), Expect = 0.69, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
N Q + TP++LA E+ + L L AG +R G P+H A + GCL+
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEAL-LGAGCDPELRDFRGNTPLHLACEQGCLA 92
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 5 MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCL 64
+ N + +P+++AA G +++ L L+ G + R D P+H A Q G +
Sbjct: 77 LGVNVTSQDGSSPLHVAALHGRADLIPLL-LKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 65 KWM 67
K +
Sbjct: 136 KCL 138
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 9 SQMDNDV-TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
++ D D T ++ A GH E+++FL L+ G + + G +P+H AA G
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFL-LQLGVPVNDKDDAGWSPLHIAASAG 84
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 9 SQMDNDV-TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
++ D D T ++ A GH E+++FL L+ G + + G +P+H AA G
Sbjct: 35 TRTDQDSRTALHWACSAGHTEIVEFL-LQLGVPVNDKDDAGWSPLHIAASAG 85
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP++ A GHL+V++ L L+ + +P+H AA+ G + +K +
Sbjct: 45 TPLHEACNHGHLKVVELL-LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
D + TP++ A ++GHL ++ L ++ G + +G + IH AAQ G S + ++
Sbjct: 74 DLNSTPLHWATRQGHLSMVVQL-MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL 128
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 18 VYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
++LAAQ GH ++ +L+ + G + + ++GM P+ AA
Sbjct: 113 IHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAA 150
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 14 DVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
D TP++LAA GH ++++ L L+ + + G P+H A G
Sbjct: 67 DDTPLHLAASHGHRDIVQKL-LQYKADINAVNEHGNVPLHYACFWG 111
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 14 DVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
D TP++LAA GH ++++ L L+ + + G P+H A G
Sbjct: 72 DDTPLHLAASHGHRDIVQKL-LQYKADINAVNEHGNVPLHYACFWG 116
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGM---APIHA 54
T + AA++GH+EVLK L+ E G V A D M A IHA
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGAD--VNACDNMGRNALIHA 189
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 22 AQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
A + L ++ F++ + GG L +A DG +H AA CLK +
Sbjct: 182 ANQASLPLVDFII-QNGGHLDAKAADGNTALHYAALYNQPDCLKLL 226
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGM---APIHA 54
T + AA++GH+EVLK L+ E G V A D M A IHA
Sbjct: 170 TALMDAAEKGHVEVLKILLDEMGAD--VNACDNMGRNALIHA 209
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 7 ANSQMDNDV--TPVYLAAQEGHLEVLKFLV 34
AN M N+ TP++LAA+EG E K L+
Sbjct: 146 ANKDMQNNKEETPLFLAAREGSYETAKVLL 175
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 7 ANSQMDNDV--TPVYLAAQEGHLEVLKFLV 34
AN M N+ TP++LAA+EG E K L+
Sbjct: 149 ANKDMQNNREETPLFLAAREGSYETAKVLL 178
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 7 ANSQMDN--DVTPVYLAAQEGHLEVLKFLV 34
AN M N + TP++LAA+EG E K L+
Sbjct: 182 ANKDMQNNREETPLFLAAREGSYETAKVLL 211
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 7 ANSQMDN--DVTPVYLAAQEGHLEVLKFLV 34
AN M N + TP++LAA+EG E K L+
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLL 210
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 22 AQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
A + L ++ F++ + GG L +A DG +H AA CLK +
Sbjct: 201 ANQASLPLVDFII-QNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 7 ANSQMDNDV--TPVYLAAQEGHLEVLKFLV 34
AN M N+ TP++LAA+EG E K L+
Sbjct: 72 ANKDMQNNKEETPLFLAAREGSYETAKVLL 101
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 7 ANSQMDN--DVTPVYLAAQEGHLEVLKFLV 34
AN M N + TP++LAA+EG E K L+
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLL 210
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 14 DVTPVYLAAQEGHLEVLKFLV 34
D+TP+ LAA+EG +E+ + ++
Sbjct: 226 DLTPLKLAAKEGKIEIFRHIL 246
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
T +Y A GH ++++ L + L + K G +HAAA G
Sbjct: 108 TALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKG 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,167,825
Number of Sequences: 62578
Number of extensions: 64964
Number of successful extensions: 380
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 191
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)