RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14142
(76 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families
of proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 53.9 bits (130), Expect = 4e-11
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ ++ TP++LAA GHLEV+K L LE G + + DG P+H AA+ G L +K +
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLL-LENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59
Score = 48.9 bits (117), Expect = 3e-09
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N++ ++ TP++LAA+ GHLE++K L LE G + R KDG P+H AA+ G L +K
Sbjct: 32 DVNAKDNDGRTPLHLAAKNGHLEIVKLL-LEKGADVNARDKDGNTPLHLAARNGNLDVVK 90
Query: 66 W 66
Sbjct: 91 L 91
Score = 46.6 bits (111), Expect = 3e-08
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N++ + TP++LAA+ G+L+V+K L L+ G + R KDG P+H AA+ G L +K
Sbjct: 65 DVNARDKDGNTPLHLAARNGNLDVVKLL-LKHGADVNARDKDGRTPLHLAAKNGHLEVVK 123
Score = 28.9 bits (65), Expect = 0.14
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV 34
N++ + TP++LAA+ GHLEV+K L+
Sbjct: 100 NARDKDGRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 48.0 bits (115), Expect = 4e-09
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSC 63
E A+ + + T ++LAA+ G+LE++K L LE G + + KDG +H AA+ G L
Sbjct: 18 EKGADVNLGDTDTALHLAARNGNLEIVKLL-LEHGADVNAKDKDGNTALHLAARNGNLEI 76
Query: 64 LKW-MEHRPAVKLT 76
+K +EH + L
Sbjct: 77 VKLLLEHGADINLK 90
Score = 36.5 bits (85), Expect = 1e-04
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 19 YLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW 66
+LAA+ G+LE++K L LE G + + D +H AA+ G L +K
Sbjct: 2 HLAAKNGNLELVKLL-LEKGADVNLGDTD--TALHLAARNGNLEIVKL 46
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 38.4 bits (90), Expect = 9e-06
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW 66
T ++ AA G LE++K+L LE G + +DG +H AA+ G L LK
Sbjct: 3 TALHKAAISGRLELVKYL-LEKGVDINRTDEDGNTALHIAAENGNLEVLKL 52
Score = 27.6 bits (62), Expect = 0.14
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 5 MSANSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ N ++ T +++AA+ G+LEVLK L+
Sbjct: 25 VDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 23.4 bits (51), Expect = 6.0
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 48 GMAPIHAAAQMGCLSCLKWM 67
G +H AA G L +K++
Sbjct: 1 GRTALHKAAISGRLELVKYL 20
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 40.3 bits (94), Expect = 2e-05
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
Y N + DN P+++A + +++K L+ E G V+ +G +P+H AA+ G +
Sbjct: 146 YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL-EKGAYANVKDNNGESPLHNAAEYGDYA 204
Query: 63 CLKWM 67
C+K +
Sbjct: 205 CIKLL 209
Score = 30.7 bits (69), Expect = 0.043
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 7 ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAA 55
AN + +N +P++ AA+ G +K L+++ G + + K+G P+H A
Sbjct: 183 ANVKDNNGESPLHNAAEYGDYACIK-LLIDHGNHIMNKCKNGFTPLHNA 230
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 37.1 bits (85), Expect = 2e-04
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 7 ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW 66
N + ++ TP++ AA G ++++ L LEAG R G+ + AA+ G + +K
Sbjct: 140 NNLRDEDGNTPLHWAALNGDADIVELL-LEAGADPNSRNSYGVTALDPAAKNGRIELVKL 198
Query: 67 MEHR 70
+ +
Sbjct: 199 LLDK 202
Score = 31.3 bits (70), Expect = 0.023
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
+ + ++ + P++ AA +G +++K L L +G + + DG P+H AA
Sbjct: 60 LIVDRHLAARDLDGRLPLHSAASKGDDKIVKLL-LASGADVNAKDADGDTPLHLAA 114
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 34.6 bits (80), Expect = 3e-04
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAA 55
+ N+ N TP++LAA+ G LE++++L L+ G L +R DG+ + A
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWL-LKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|220865 pfam10728, DUF2520, Domain of unknown function (DUF2520). This
presumed domain is found C-terminal to a Rossmann-like
domain suggesting that these proteins are
oxidoreductases.
Length = 131
Score = 32.2 bits (74), Expect = 0.008
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
P + E L +L+ LV E GG + A++ A HAAA
Sbjct: 2 IPFAIEGDEEALAILEALVAELGGKPFEIAEEQRALYHAAAVFAS 46
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities. Repeats 13-24 are
especially active, with known sites of interaction for
the Na/K ATPase, Cl/HCO(3) anion exchanger,
voltage-gated sodium channel, clathrin heavy chain and
L1 family cell adhesion molecules. The ANK repeats are
found to form a contiguous spiral stack such that ion
transporters like the anion exchanger associate in a
large central cavity formed by the ANK repeat spiral,
while clathrin and cell adhesion molecules associate
with specific regions outside this cavity.
Length = 33
Score = 30.2 bits (69), Expect = 0.009
Identities = 18/31 (58%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAK 46
TP++LAA+ GHLEV+K L LEAG + R K
Sbjct: 4 TPLHLAARNGHLEVVKLL-LEAGADVNARDK 33
Score = 25.2 bits (56), Expect = 1.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 47 DGMAPIHAAAQMGCLSCLKWM 67
DG P+H AA+ G L +K +
Sbjct: 1 DGNTPLHLAARNGHLEVVKLL 21
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 29.1 bits (66), Expect = 0.032
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYV 43
+ TP++LAA+ G+LEV+K L L+ G +
Sbjct: 1 DGRTPLHLAAENGNLEVVKLL-LDKGADINA 30
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 29.2 bits (65), Expect = 0.14
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM-EHRPAVK 74
TP++LA L+++K L + G + D +P+H A MG + ++ + +H+ +
Sbjct: 104 TPLHLATILKKLDIMKLL-IARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD 162
Query: 75 L 75
+
Sbjct: 163 I 163
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 28.8 bits (65), Expect = 0.21
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 8 NSQMDNDVTP--VYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHA 54
N++ TP VYL+ + +V++ L L G + GM P+
Sbjct: 111 NAKDKVGRTPLHVYLSGFNINPKVIRLL-LRKGADVNALDLYGMTPLAV 158
Score = 25.4 bits (56), Expect = 3.0
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 27 LEVLKFLVLEAGGSLYVRAKDGMAPIHA 54
L+V+K L+ +AG + + K G P+H
Sbjct: 97 LDVIKLLI-KAGADVNAKDKVGRTPLHV 123
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 28.7 bits (65), Expect = 0.23
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 10 QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAK 46
QM D V LAA HLE + VLE VRAK
Sbjct: 604 QMFGDEIKVSLAANPSHLEAVD-PVLEG----IVRAK 635
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 28.3 bits (63), Expect = 0.27
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
TP+++A GH++V++ L LE G + KDG P+ A + G
Sbjct: 117 TPLHIACANGHVQVVRVL-LEFGADPTLLDKDGKTPLELAEENG 159
>gnl|CDD|219940 pfam08622, Svf1, Svf1-like. Family of proteins that are involved
in survival during oxidative stress.
Length = 324
Score = 28.0 bits (63), Expect = 0.40
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 24 EGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
EG + + G ++V A GM P HAA+
Sbjct: 140 EGTITTKDKEIDLKGPGMFVHALQGMKPHHAAS 172
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 25.4 bits (56), Expect = 2.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 14 DVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAK 46
+T ++LAA + E++K L LE G S+ RA
Sbjct: 128 GITALHLAAHRQNYEIVKLL-LERGASVPARAC 159
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 23.8 bits (52), Expect = 2.9
Identities = 13/23 (56%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAG 38
TP++LAA+ G+LE++K L LE G
Sbjct: 4 TPLHLAARNGNLELVKLL-LEHG 25
>gnl|CDD|223741 COG0669, CoaD, Phosphopantetheine adenylyltransferase [Coenzyme
metabolism].
Length = 159
Score = 25.2 bits (56), Expect = 3.0
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 3 YEM---SANSQMDNDVTPVYLAAQEGHLEV 29
YE+ N ++ +V V+L + +
Sbjct: 98 YELQMAHMNRKLAPEVETVFLMPSPEYSFI 127
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 25.6 bits (56), Expect = 3.1
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 8 NSQMDNDVTPVYLAAQEGHL--EVLKFLVLEAGGSLYVRAKDGMAPI 52
N Q ++ +TP++ G++ V+K ++E GG + ++ +GM+PI
Sbjct: 206 NLQNNHLITPLHTYLITGNVCASVIK-KIIELGGDMDMKCVNGMSPI 251
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 25.0 bits (54), Expect = 4.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 52 IHAAAQMGCLSCLKWMEHRPAVKL 75
+ AAAQ+ L+CL+ M AV L
Sbjct: 155 VMAAAQVAGLNCLRLMNETTAVAL 178
>gnl|CDD|163461 TIGR03749, conj_TIGR03749, integrating conjugative element
protein, PFL_4704 family. Members of this protein
family are found occasionally on plasmids such as the
Pseudomonas putida TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main
chromosome in a region flanked by markers of
conjugative transfer and/or transposition [Mobile and
extrachromosomal element functions, Plasmid functions].
Length = 257
Score = 24.2 bits (53), Expect = 7.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 31 KFLVLEAGGSLYVRAKDGMAPI 52
K V GG++Y+RA + P
Sbjct: 52 KLRVQSTGGAVYLRASEPFPPT 73
>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.
Length = 847
Score = 24.3 bits (53), Expect = 7.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 36 EAGGSLYVRAKDGMAPIHA 54
E G +LYV GM P HA
Sbjct: 699 EKGWNLYVCGNGGMKPRHA 717
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.131 0.392
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,648,263
Number of extensions: 267150
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 35
Length of query: 76
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 30
Effective length of database: 8,897,318
Effective search space: 266919540
Effective search space used: 266919540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)