RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14144
(100 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families
of proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 56.6 bits (137), Expect = 1e-11
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ ++ TP++LAA GHLEV+K L LE G + + DG P+H AA+ G L +K +
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLL-LENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59
Query: 68 LYEACNI 74
L + ++
Sbjct: 60 LEKGADV 66
Score = 49.7 bits (119), Expect = 3e-09
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N++ ++ TP++LAA+ GHLE++K L LE G + R KDG P+H AA+ G L +K
Sbjct: 32 DVNAKDNDGRTPLHLAAKNGHLEIVKLL-LEKGADVNARDKDGNTPLHLAARNGNLDVVK 90
Query: 66 WMLYEACNI 74
+L ++
Sbjct: 91 LLLKHGADV 99
Score = 46.6 bits (111), Expect = 6e-08
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N++ + TP++LAA+ G+L+V+K L L+ G + R KDG P+H AA+ G L +K
Sbjct: 65 DVNARDKDGNTPLHLAARNGNLDVVKLL-LKHGADVNARDKDGRTPLHLAAKNGHLEVVK 123
Query: 66 WML 68
+L
Sbjct: 124 LLL 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 48.4 bits (116), Expect = 5e-09
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSC 63
E A+ + + T ++LAA+ G+LE++K L LE G + + KDG +H AA+ G L
Sbjct: 18 EKGADVNLGDTDTALHLAARNGNLEIVKLL-LEHGADVNAKDKDGNTALHLAARNGNLEI 76
Query: 64 LKWMLYEACNI 74
+K +L +I
Sbjct: 77 VKLLLEHGADI 87
Score = 37.6 bits (88), Expect = 9e-05
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 19 YLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEACNI 74
+LAA+ G+LE++K L LE G + + D +H AA+ G L +K +L ++
Sbjct: 2 HLAAKNGNLELVKLL-LEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADV 54
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 42.3 bits (99), Expect = 7e-06
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
Y N + DN P+++A + +++K L+ E G V+ +G +P+H AA+ G +
Sbjct: 146 YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL-EKGAYANVKDNNGESPLHNAAEYGDYA 204
Query: 63 CLKWMLYEACNIF-KLTACIILSHYNIIRRRRVV 95
C+K ++ +I K H II R +
Sbjct: 205 CIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAI 238
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 38.0 bits (89), Expect = 3e-05
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWML 68
T ++ AA G LE++K+L LE G + +DG +H AA+ G L LK +L
Sbjct: 3 TALHKAAISGRLELVKYL-LEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 26.8 bits (60), Expect = 0.57
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 5 MSANSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ N ++ T +++AA+ G+LEVLK L+
Sbjct: 25 VDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 25.3 bits (56), Expect = 2.1
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 48 GMAPIHAAAQMGCLSCLKWMLYEACNIFKLTAC 80
G +H AA G L +K++L + +I +
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDED 33
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 37.1 bits (85), Expect = 5e-04
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 7 ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW 66
N + ++ TP++ AA G ++++ L LEAG R G+ + AA+ G + +K
Sbjct: 140 NNLRDEDGNTPLHWAALNGDADIVELL-LEAGADPNSRNSYGVTALDPAAKNGRIELVKL 198
Query: 67 ML 68
+L
Sbjct: 199 LL 200
Score = 30.9 bits (69), Expect = 0.066
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
+ + ++ + P++ AA +G +++K L L +G + + DG P+H AA
Sbjct: 60 LIVDRHLAARDLDGRLPLHSAASKGDDKIVKLL-LASGADVNAKDADGDTPLHLAA 114
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 34.3 bits (79), Expect = 7e-04
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 MSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAA 55
+ N+ N TP++LAA+ G LE++++L L+ G L +R DG+ + A
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWL-LKPGVDLNLRDSDGLTALDLA 56
Score = 23.9 bits (52), Expect = 7.5
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 46 KDGMAPIHAAAQMGCLSCLKWMLYEACNIFKLTAC 80
+G P+H AA+ G L ++W+L ++ +
Sbjct: 14 GNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSD 48
>gnl|CDD|220865 pfam10728, DUF2520, Domain of unknown function (DUF2520). This
presumed domain is found C-terminal to a Rossmann-like
domain suggesting that these proteins are
oxidoreductases.
Length = 131
Score = 33.3 bits (77), Expect = 0.007
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
P + E L +L+ LV E GG + A++ A HAAA
Sbjct: 2 IPFAIEGDEEALAILEALVAELGGKPFEIAEEQRALYHAAAVFAS 46
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities. Repeats 13-24 are
especially active, with known sites of interaction for
the Na/K ATPase, Cl/HCO(3) anion exchanger,
voltage-gated sodium channel, clathrin heavy chain and
L1 family cell adhesion molecules. The ANK repeats are
found to form a contiguous spiral stack such that ion
transporters like the anion exchanger associate in a
large central cavity formed by the ANK repeat spiral,
while clathrin and cell adhesion molecules associate
with specific regions outside this cavity.
Length = 33
Score = 30.6 bits (70), Expect = 0.013
Identities = 18/31 (58%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAK 46
TP++LAA+ GHLEV+K L LEAG + R K
Sbjct: 4 TPLHLAARNGHLEVVKLL-LEAGADVNARDK 33
Score = 28.3 bits (64), Expect = 0.090
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 47 DGMAPIHAAAQMGCLSCLKWMLYEACNI 74
DG P+H AA+ G L +K +L ++
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADV 28
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 30.2 bits (68), Expect = 0.12
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
+ M +++ V LE L L+A + G P+H AA G C+ +
Sbjct: 522 DPNMASNLLTVASTGNAALLEEL----LKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVL 577
Query: 68 LYEACNI 74
L ACN+
Sbjct: 578 LKHACNV 584
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 27.6 bits (62), Expect = 0.17
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYV 43
+ TP++LAA+ G+LEV+K L L+ G +
Sbjct: 1 DGRTPLHLAAENGNLEVVKLL-LDKGADINA 30
Score = 24.1 bits (53), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 47 DGMAPIHAAAQMGCLSCLKWMLYEACNI 74
DG P+H AA+ G L +K +L + +I
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADI 28
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 29.5 bits (67), Expect = 0.21
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 10 QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAK 46
QM D V LAA HLE + VLE VRAK
Sbjct: 604 QMFGDEIKVSLAANPSHLEAVD-PVLEG----IVRAK 635
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 29.5 bits (66), Expect = 0.26
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEACNIF 75
TP+++A GH++V++ L LE G + KDG P+ A + G ++ + + F
Sbjct: 117 TPLHIACANGHVQVVRVL-LEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHF 175
Query: 76 KLTAC 80
+L A
Sbjct: 176 ELGAN 180
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 29.2 bits (65), Expect = 0.27
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWML-YEAC 72
TP++LA L+++K L + G + D +P+H A MG + ++ ++ ++AC
Sbjct: 104 TPLHLATILKKLDIMKLL-IARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC 160
>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF);
Provisional.
Length = 1780
Score = 29.0 bits (65), Expect = 0.35
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 74 IFKLTACIILSHYNIIRRRRVVFKIW 99
+F LT + ++HYN+ R R V IW
Sbjct: 1110 VFSLTKIVEIAHYNMNRIRLVWSSIW 1135
>gnl|CDD|219940 pfam08622, Svf1, Svf1-like. Family of proteins that are involved
in survival during oxidative stress.
Length = 324
Score = 27.6 bits (62), Expect = 1.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 24 EGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
EG + + G ++V A GM P HAA+
Sbjct: 140 EGTITTKDKEIDLKGPGMFVHALQGMKPHHAAS 172
>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional.
Length = 216
Score = 27.2 bits (60), Expect = 1.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 43 VRAKDGMAPIHAAAQMGCLSCLKWMLYEACNIFKLTACIILSHYNIIRRR 92
V +DG A A+ LS L+ EA N+ K I+L Y+II ++
Sbjct: 135 VAEEDG----QALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKK 180
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 27.3 bits (61), Expect = 1.3
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 8 NSQMDNDVTP--VYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHA 54
N++ TP VYL+ + +V++ L L G + GM P+
Sbjct: 111 NAKDKVGRTPLHVYLSGFNINPKVIRLL-LRKGADVNALDLYGMTPLAV 158
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 27.3 bits (61), Expect = 1.4
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEACNIF 75
TP++ A + E +K+L L+ G + + K G P+H A K +L +I
Sbjct: 194 TPLHYAVYNNNPEFVKYL-LDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK 252
Query: 76 KLTACIILSHYNII 89
+ ++ +
Sbjct: 253 TIIETLLYFKDKDL 266
>gnl|CDD|197312 cd09078, nSMase, Neutral sphingomyelinases (nSMase) catalyze the
hydrolysis of sphingomyelin in biological membranes to
ceramide and phosphorylcholine. Sphingomyelinases
(SMase) are phosphodiesterases that catalyze the
hydrolysis of sphingomyelin to ceramide and
phosphorylcholine. Eukaryotic SMases have been
classified according to their pH optima and are known as
acid SMase, alkaline SMase, and neutral SMase (nSMase).
Eukaryotic proteins in this family are nSMases, and are
activated by a variety of stress-inducing agents such as
cytokines or UV radiation. Ceramides and other metabolic
derivatives, including sphingosine, are lipid "second
messenger" molecules that participate in the regulation
of stress-induced cellular responses, including cell
death, adhesion, differentiation, and proliferation.
Bacterial neutral SMases, which also belong to this
domain family, are secreted proteins that act as
membrane-damaging virulence factors. They promote
colonization of the host tissue. This family belongs to
the large EEP (exonuclease/endonuclease/phosphatase)
superfamily that contains functionally diverse enzymes
that share a common catalytic mechanism of cleaving
phosphodiester bonds.
Length = 280
Score = 26.2 bits (58), Expect = 3.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 80 CIILSHYNIIRRRRVVFK 97
+ILS Y I+ + + +F
Sbjct: 85 VVILSRYPIVEKDQYIFP 102
>gnl|CDD|163461 TIGR03749, conj_TIGR03749, integrating conjugative element
protein, PFL_4704 family. Members of this protein
family are found occasionally on plasmids such as the
Pseudomonas putida TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main
chromosome in a region flanked by markers of
conjugative transfer and/or transposition [Mobile and
extrachromosomal element functions, Plasmid functions].
Length = 257
Score = 25.3 bits (56), Expect = 6.1
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 10 QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPI 52
+D +V G L V GG++Y+RA + P
Sbjct: 36 FVDKNVRVGVPQQLAGKLRVQS-----TGGAVYLRASEPFPPT 73
>gnl|CDD|223741 COG0669, CoaD, Phosphopantetheine adenylyltransferase [Coenzyme
metabolism].
Length = 159
Score = 25.2 bits (56), Expect = 6.5
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 3 YEM---SANSQMDNDVTPVYLAAQEGHLEV 29
YE+ N ++ +V V+L + +
Sbjct: 98 YELQMAHMNRKLAPEVETVFLMPSPEYSFI 127
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.138 0.431
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,010,509
Number of extensions: 396308
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 41
Length of query: 100
Length of database: 10,937,602
Length adjustment: 66
Effective length of query: 34
Effective length of database: 8,010,238
Effective search space: 272348092
Effective search space used: 272348092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)