RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14144
(100 letters)
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 56.3 bits (137), Expect = 5e-11
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 7 ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+D +P++ AA GH L+ L + G ++ + D ++P+H A G LSC+K
Sbjct: 52 LMGDAVSDWSPMHEAAIHGHQLSLRNL-ISQGWAVNIITADHVSPLHEACLGGHLSCVK 109
Score = 51.0 bits (123), Expect = 3e-09
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N + V+P++ A GHL +K L L+ G + D P+ A G C+
Sbjct: 86 NIITADHVSPLHEACLGGHLSCVKIL-LKHGAQVNGVTADWHTPLFNACVSGSWDCVN 142
Score = 50.6 bits (122), Expect = 4e-09
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N + TP++ A G + + L L+ G S+ D +PIH AA+ G + C+
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLL-LQHGASVQ-PESDLASPIHEAARRGHVECVN 174
Score = 48.6 bits (117), Expect = 2e-08
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 7 ANSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
A+ Q ++D +P++ AA+ GH+E + L + GG++ + P++ A + +C+K
Sbjct: 149 ASVQPESDLASPIHEAARRGHVECVNSL-IAYGGNIDHKISHLGTPLYLACENQQRACVK 207
Score = 47.9 bits (115), Expect = 4e-08
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 7 ANSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
A+ +P++ + E+ L ++ G + +G P+ L
Sbjct: 214 ADVNQGKGQDSPLHAVVRTASEELACLL-MDFGADTQAKNAEGKRPVELVPPESPL 268
Score = 47.5 bits (114), Expect = 6e-08
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ ++ + TP+YLA + +K L LE+G + + K +P+HA +
Sbjct: 184 DHKISHLGTPLYLACENQQRACVKKL-LESGADVN-QGKGQDSPLHAVVRTASE 235
Score = 37.5 bits (88), Expect = 2e-04
Identities = 7/47 (14%), Positives = 11/47 (23%), Gaps = 6/47 (12%)
Query: 20 LAAQEGHLEVLKFLVLEAGGSL-----YVRAKDGMAPIHAAAQMGCL 61
+ + H L + G + DG P G
Sbjct: 1 MGSSHHHHHHSSGL-VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR 46
Score = 29.4 bits (67), Expect = 0.15
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVL 30
++ PV L E L L
Sbjct: 249 QAKNAEGKRPVELVPPESPLAQL 271
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 54.0 bits (131), Expect = 1e-10
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N N TP+ A + H++ ++ L L G L A G P+ A +G +
Sbjct: 96 NIYDWNGGTPLLYAVRGNHVKCVEAL-LARGADLTTEADSGYTPMDLAVALGYRKVQQ 152
Score = 54.0 bits (131), Expect = 1e-10
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N + TP+ A+ G +E ++FL LE G ++ AK+ + + A+ G +
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFL-LEWGADPHILAKERESALSLASTGGYTDIVG 86
Score = 51.6 bits (125), Expect = 1e-09
Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+ + + LA+ G+ +++ L LE + + +G P+ A + + C++
Sbjct: 63 HILAKERESALSLASTGGYTDIVGLL-LERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119
Score = 45.9 bits (110), Expect = 1e-07
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGCLSCLK 65
++ A +G L+ LK L G +L V D G P+ A+ G + ++
Sbjct: 4 LSIHQLAAQGELDQLKEH-LRKGDNL-VNKPDERGFTPLIWASAFGEIETVR 53
Score = 42.4 bits (101), Expect = 2e-06
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAP 51
++ D+ TP+ LA G+ +V + + L+ P
Sbjct: 129 TTEADSGYTPMDLAVALGYRKVQQVI-ENHILKLFQSNLVPADP 171
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 52.0 bits (126), Expect = 1e-10
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N++ N TP++LAA+ GHLEV+K L LEAG + + K+G P+H AA+ G L
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHL 81
Score = 50.0 bits (121), Expect = 9e-10
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
TP++LAA+ GHLEV+K L LEAG + + K+G P+H AA+ G L
Sbjct: 4 TPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHL 48
Score = 36.6 bits (86), Expect = 1e-04
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG 38
N++ N TP++LAA+ GHLEV+K L LEAG
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAG 91
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 54.4 bits (132), Expect = 2e-10
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ VTP++LAAQEGH E++ L L + + K G+ P+H AQ G + +
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALL-LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Query: 68 LY-----EACNIFKLTACIILSHYN 87
+ +A T + SHY
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYG 322
Score = 53.7 bits (130), Expect = 5e-10
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N TP+++AA+ GH EV K+L L+ + +AKD P+H AA++G + +K +
Sbjct: 41 NVSNVKVETPLHMAARAGHTEVAKYL-LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 99
Query: 68 L 68
L
Sbjct: 100 L 100
Score = 53.7 bits (130), Expect = 5e-10
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N TP+++AA+EGH+E + L LE S K G P+H AA+ G + + +
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLAL-LEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Query: 68 LYEACNI 74
L +
Sbjct: 166 LERDAHP 172
Score = 53.3 bits (129), Expect = 7e-10
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N+ N +TP+++A +L+++K L L GGS + A +G P+H AA+ +
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLL-LPRGGSPHSPAWNGYTPLHIAAKQNQV 225
Score = 52.9 bits (128), Expect = 8e-10
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N++ +P++ AAQ+GH +++ L L+ G S + DG P+ A ++G +S
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLL-LKNGASPNEVSSDGTTPLAIAKRLGYISVTD 394
Score = 52.1 bits (126), Expect = 1e-09
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ +D TP++ AA+ GH ++K L LE + + G P+H AA+ G + + +
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLL-LENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 68 LYEACNI 74
L + +
Sbjct: 133 LEKEASQ 139
Score = 51.7 bits (125), Expect = 2e-09
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N + +TP++L AQEGH+ V L ++ G + + G P+H A+ G + +K++
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVL-IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Query: 68 L 68
L
Sbjct: 331 L 331
Score = 51.0 bits (123), Expect = 4e-09
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
TP+++AA+ G + V + L LE K+G+ P+H A L +K +
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELL-LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Query: 68 L 68
L
Sbjct: 199 L 199
Score = 50.6 bits (122), Expect = 5e-09
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+S N TP+++AA++ +EV + L L+ GGS + G+ P+H AAQ G +
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSL-LQYGGSANAESVQGVTPLHLAAQEGHAEMVA 262
Score = 48.6 bits (117), Expect = 3e-08
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
++ +TP+++A+ GHL ++K L L+ G S V P+H AA+ G K++
Sbjct: 8 GGGGESGLTPLHVASFMGHLPIVKNL-LQRGASPNVSNVKVETPLHMAARAGHTEVAKYL 66
Query: 68 L 68
L
Sbjct: 67 L 67
Score = 47.1 bits (113), Expect = 8e-08
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
++ TP+++A+ G+++++KFL L+ + + K G +P+H AAQ G +
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFL-LQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 361
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFL--VLEAGGSLYVRAKDGMAPIHAA 55
N + TP+ +A + G++ V L V + + V K M+
Sbjct: 371 NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420
Score = 26.7 bits (60), Expect = 1.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 44 RAKDGMAPIHAAAQMGCLSCLKWMLYEACNI 74
+ G+ P+H A+ MG L +K +L +
Sbjct: 10 GGESGLTPLHVASFMGHLPIVKNLLQRGASP 40
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END
capping, inhibition, prote binding, actin capping,
actin-binding, cytoskeleton, ANK RE; 2.20A {Homo
sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Length = 123
Score = 52.4 bits (127), Expect = 2e-10
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N ++ P++ AA G LE+L+FL L G + K + P+ +A G +SC+K
Sbjct: 34 NRTLEGGRKPLHYAADCGQLEILEFL-LLKGADINAPDKHHITPLLSAVYEGHVSCVK 90
Score = 52.0 bits (126), Expect = 3e-10
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N+ + +TP+ A EGH+ +K L L G V+ DG+ A + L+
Sbjct: 67 NAPDKHHITPLLSAVYEGHVSCVKLL-LSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 48.2 bits (116), Expect = 1e-08
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 11 MDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ + A + G L+ +K + G + + G P+H AA G L
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDY-VAKGEDVNRTLEGGRKPLHYAADCGQL 53
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 52.8 bits (128), Expect = 2e-10
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N Q + +PV+ AA+ G L+ LK L +E G + V G PIH A Q G
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVL-VEHGADVNVPDGTGALPIHLAVQEGHT 114
Score = 49.3 bits (119), Expect = 5e-09
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
D P++LA QEGH V+ FL A L+ R G+ P+ A Q G
Sbjct: 98 DGTGALPIHLAVQEGHTAVVSFLA--AESDLHRRDARGLTPLELALQRGAQ 146
Score = 46.3 bits (111), Expect = 6e-08
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
++ T + + G + L L+ G S V+ G +P+H AA+ G L
Sbjct: 30 DALNRFGKTALQVMM-FGSTAIALEL-LKQGASPNVQDTSGTSPVHDAARTGFL 81
Score = 39.7 bits (94), Expect = 2e-05
Identities = 5/41 (12%), Positives = 13/41 (31%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
+ AA G ++ ++ L+ + G +
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM 44
Score = 35.8 bits (84), Expect = 6e-04
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ + +TP+ LA Q G +++ L
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQ 153
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV;
NMR {Escherichia coli}
Length = 115
Score = 52.0 bits (126), Expect = 3e-10
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N++ + TP++LAA+ GH E++K L L G + R+KDG P H A + G
Sbjct: 36 NARSKDGNTPLHLAAKNGHAEIVKLL-LAKGADVNARSKDGNTPEHLAKKNGHH 88
Score = 50.5 bits (122), Expect = 8e-10
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
D TP++ AA+ GH E +K L L G + R+KDG P+H AA+ G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKL-LSKGADVNARSKDGNTPLHLAAKNGHA 55
Score = 40.4 bits (96), Expect = 6e-06
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIH 53
N++ + TP +LA + GH E++K L G + R+ H
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLL-DAKGADVNARSWGSSHHHH 113
>3v31_A Ankyrin repeat family A protein 2; structural genomics
consortium, SGC, ankra2, ANK repeat, Pro binding,
HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 52.8 bits (128), Expect = 3e-10
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N + TP+ AA G + V++FL L+ G + K + + A G
Sbjct: 30 NHTDEEGFTPLMWAAAHGQIAVVEFL-LQNGADPQLLGKGRESALSLACSKGYT 82
Score = 52.0 bits (126), Expect = 7e-10
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N N TP+ A H++ +K L LE+G + G + A +G S +
Sbjct: 96 NEYDWNGGTPLLYAVHGNHVKCVKML-LESGADPTIETDSGYNSMDLAVALGYRSVQQ 152
Score = 51.6 bits (125), Expect = 8e-10
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+ + LA +G+ +++K L L+ G + +G P+ A + C+K
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKML-LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119
Score = 47.4 bits (114), Expect = 3e-08
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ V+ A +G + L +E + ++G P+ AA G +
Sbjct: 2 ANSLSVHQLAAQGEMLYLATR-IEQENVINHTDEEGFTPLMWAAAHGQI 49
Score = 38.1 bits (90), Expect = 9e-05
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD 47
+ D+ + LA G+ V + + L K+
Sbjct: 129 TIETDSGYNSMDLAVALGYRSVQQVI-ESHLLKLLQNIKE 167
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase,
pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens}
PDB: 3ixe_A 2kbx_A
Length = 179
Score = 52.4 bits (127), Expect = 5e-10
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N D+ +P++ A +EG V++ L + G + V + P+H AA G
Sbjct: 33 NQGDDHGFSPLHWACREGRSAVVEML-IMRGARINVMNRGDDTPLHLAASHGHR 85
Score = 47.4 bits (114), Expect = 4e-08
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ + ++ +EG+ ++ + L G +P+H A + G
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRS 52
Score = 47.0 bits (113), Expect = 5e-08
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+ P++ A G +V + L + G + + K G P+ A +
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDL-VANGALVSICNKYGEMPVDKAKAPLRELLRE 155
Score = 46.3 bits (111), Expect = 9e-08
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N D TP++LAA GH ++++ L L+ + + G P+H A G
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKL-LQYKADINAVNEHGNVPLHYACFWGQD 118
Score = 35.5 bits (83), Expect = 0.001
Identities = 6/52 (11%), Positives = 10/52 (19%), Gaps = 7/52 (13%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
+ PV A + + + G P G
Sbjct: 132 SICNKYGEMPVDKAKAPLRELLRERA-EKMG------QNLNRIPYKDTFWKG 176
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent
kinase, cyclin dependent kinase inhibitory protein,
CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1
PDB: 1a5e_A 1dc2_A 2a5e_A
Length = 156
Score = 51.7 bits (125), Expect = 6e-10
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
E +A S M+ + AA G +E ++ L LEAG + G PI
Sbjct: 2 EPAAGSSMEPSADWLATAAARGRVEEVRAL-LEAGANPNAPNSYGRRPIQVMMM 54
Score = 50.2 bits (121), Expect = 2e-09
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
PV+ AA+EG L+ L L AG L VR G P+ A ++G +
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVL-HRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128
Score = 46.3 bits (111), Expect = 8e-08
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGM-APIHAAAQMGCLSCLK 65
N+ P+ + G V + L L G + P+H AA+ G L L
Sbjct: 39 NAPNSYGRRPIQVMMM-GSARVAELL-LLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95
Score = 44.4 bits (106), Expect = 3e-07
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ + PV LA + GH +V ++L A G R + A G
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYL-RAAAGG--TRGSN---HARIDAAEGPS 152
Score = 27.4 bits (62), Expect = 0.60
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 13 NDVTPVYLAAQEGHLEV 29
+ A EG ++
Sbjct: 138 RGSNHARIDAAEGPSDI 154
Score = 25.1 bits (56), Expect = 3.5
Identities = 4/31 (12%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 35 LEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+E + + AA G + ++
Sbjct: 1 MEPAAG--SSMEPSADWLATAAARGRVEEVR 29
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 52.6 bits (127), Expect = 6e-10
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N Q T ++ AA +G+ ++++ L L G +R + A C S LK
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLL-LAKGARTDLRNIEKKLAFDMATNAACASLLK 190
Score = 52.2 bits (126), Expect = 9e-10
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N T +Y A GH ++++ L + L + K G +HAAA G
Sbjct: 100 NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYA 153
Score = 50.3 bits (121), Expect = 5e-09
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 7 ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
Q ++ P++ AA+ G+L L+ L+ + K G ++ A G ++
Sbjct: 66 VAEQAESIDNPLHEAAKRGNLSWLREC-LDNRVGVNGLDKAGSTALYWACHGGHKDIVE 123
Score = 46.1 bits (110), Expect = 1e-07
Identities = 8/85 (9%), Positives = 14/85 (16%), Gaps = 3/85 (3%)
Query: 5 MSA--NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
MS + V+ A L +E G + G
Sbjct: 1 MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYIE-EGDIIYITDMSDTNWWKGTSKGRTG 59
Query: 63 CLKWMLYEACNIFKLTACIILSHYN 87
+ +
Sbjct: 60 LIPSNYVAEQAESIDNPLHEAAKRG 84
Score = 41.1 bits (97), Expect = 1e-05
Identities = 3/49 (6%), Positives = 10/49 (20%), Gaps = 2/49 (4%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
+ + +A +LK + + +
Sbjct: 170 NIEKKLAFDMATNAACASLLKKK-QGTDAVRTLSNAEDYLDDEDSDLEH 217
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 52.4 bits (127), Expect = 7e-10
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N Q D TP+ A + H++++K L L G + +R + +H AA GC+
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLL-LSKGSDINIRDNEENICLHWAAFSGCV 157
Score = 50.5 bits (122), Expect = 4e-09
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
++ ++ TP+ AA+ HLE +K+L ++AG + + +G +H AA+ G ++
Sbjct: 38 DTCSEDQRTPLMEAAENNHLEAVKYL-IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQ 94
Score = 48.9 bits (118), Expect = 2e-08
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ N +P++ AA+ GH+++ L ++AG ++ ++D P+ AA+ L
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHML-VQAGANIDTCSEDQRTPLMEAAENNHL 57
Score = 48.6 bits (117), Expect = 2e-08
Identities = 9/54 (16%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
++ + +P+++AA+E + + L + ++ K+G P+ A+ +
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLF-LSRDSDVTLKNKEGETPLQCASLNSQV 223
Score = 48.2 bits (116), Expect = 3e-08
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N + + + ++ AA G +++ + L L A L+ G +P+H AA+ C+
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEIL-LAAKCDLHAVNIHGDSPLHIAARENRYDCVV 194
Score = 48.2 bits (116), Expect = 3e-08
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ + T ++LAA++GH EV+++L+ + + G P+ A + +
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Score = 32.4 bits (75), Expect = 0.011
Identities = 3/27 (11%), Positives = 8/27 (29%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ TP+ A+ + +
Sbjct: 204 TLKNKEGETPLQCASLNSQVWSALQMS 230
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 50.3 bits (121), Expect = 9e-10
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
++ N TP++LAA+ GHLEV+K L LEAG + + K G + G + +
Sbjct: 51 AAKDKNGSTPLHLAARNGHLEVVKLL-LEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 47.2 bits (113), Expect = 1e-08
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ + AA+ G + ++ L + G + + K+G P+H AA+ G L
Sbjct: 22 SDLGKKLLEAARAGQDDEVRIL-MANGADVAAKDKNGSTPLHLAARNGHL 70
Score = 37.6 bits (88), Expect = 6e-05
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 4/41 (9%)
Query: 21 AAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ H L + G + D + AA+ G
Sbjct: 1 GSSHHHHHHSSGL-VPRGSHMG---SDLGKKLLEAARAGQD 37
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 52.6 bits (127), Expect = 1e-09
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
Q T ++LA + G ++ K+L G G PIH A +
Sbjct: 47 TIQNRFGCTALHLACKFGCVDTAKYL-ASVGEV--HSLWHGQKPIHLAVMANKTDLVV-A 102
Query: 68 LYEACNIFKLTACIILSHYN 87
L E +L+ +
Sbjct: 103 LVEGAKERGQMPESLLNECD 122
Score = 48.7 bits (117), Expect = 3e-08
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 1/59 (1%)
Query: 7 ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+ V AA EVL+ L E + G + + +
Sbjct: 283 VLPDRVVWLDFVPAAADPSKQEVLQLL-QEKLDEVVRSLNTGAGGAVKRKKKAAPAVKR 340
Score = 47.6 bits (114), Expect = 5e-08
Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 7 ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ + P++LA +++ L +E + G P +
Sbjct: 77 EVHSLWHGQKPIHLAVMANKTDLVVAL-VEGA------KERGQMPESLLNECDER 124
Score = 47.6 bits (114), Expect = 6e-08
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGS----LYVRAKDGMAPIHAAAQMGCL 61
++ D TP+ A + + E L ++ L K G + +H A +
Sbjct: 167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224
Score = 47.6 bits (114), Expect = 6e-08
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
D ++ +++AA++G + ++ L +E G S ++ + G +H A + GC+
Sbjct: 14 IKSDDENMEKIHVAARKGQTDEVRRL-IETGVSPTIQNRFGCTALHLACKFGCV 66
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 4 EMSANSQMDNDVTPVYLAAQEG--HLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
E+ ++ + T ++ G +LE++K L ++ G S + K P+ A +
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL-VQLGASPTAKDKADETPLMRAMEFRNR 186
Query: 62 SCLKWML 68
L M+
Sbjct: 187 EALDLMM 193
Score = 45.6 bits (109), Expect = 3e-07
Identities = 5/54 (9%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ + ++ A +V +E G + + + P++ + + +
Sbjct: 205 DYANKQGNSHLHWAILINWEDVAMRF-VEMGIDVNMEDNEHTVPLYLSVRAAMV 257
Score = 44.5 bits (106), Expect = 8e-07
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV------------LEAGGSLYVRAKDGMAPIHAA 55
N + + P+YL+ + + + K L+ G ++ + + AA
Sbjct: 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAA 297
Query: 56 AQMGCLSCLK 65
A L+
Sbjct: 298 ADPSKQEVLQ 307
Score = 40.2 bits (95), Expect = 2e-05
Identities = 3/48 (6%), Positives = 12/48 (25%), Gaps = 1/48 (2%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAA 55
++ ++ V + L + R++ +
Sbjct: 317 VRSLNTGAGGAVKRKKKAAPAVKRMK-LAPSAPVRTRSRSRARSSAVS 363
Score = 39.9 bits (94), Expect = 4e-05
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
+ P L + EV + +V+ G +H +G
Sbjct: 109 ERGQMPESLLNECDEREVNEIGS-------HVKHCKGQTALHWCVGLGP 150
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 52.1 bits (126), Expect = 1e-09
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
D + TP++ A ++GHL ++ L ++ G + +G + IH AAQ G S +
Sbjct: 74 DLNSTPLHWATRQGHLSMVVQL-MKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126
Score = 50.5 bits (122), Expect = 5e-09
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
D + A Q G E + L +EAG + K+ + +H AA +
Sbjct: 7 DYSTWDIVKATQYGIYERCREL-VEAGYDVRQPDKENVTLLHWAAINNRI 55
Score = 47.8 bits (115), Expect = 4e-08
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
T ++ A G+ V+ L LEAG ++ + G + + A Q +
Sbjct: 179 TALHWAVLAGNTTVISLL-LEAGANVDAQNIKGESALDLAKQRKNV 223
Score = 47.4 bits (114), Expect = 5e-08
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
+ + ++LAAQ GH ++ +L + G + + ++GM P+ AA
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIVAYL-IAKGQDVDMMDQNGMTPLMWAAYRT 153
Score = 47.0 bits (113), Expect = 6e-08
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD-GMAPIHAAAQMGCLSCLK 65
+VT ++ AA ++++K+ + G + D P+H A + G LS +
Sbjct: 36 RQPDKENVTLLHWAAINNRIDLVKYY-ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93
Score = 40.9 bits (97), Expect = 1e-05
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 8 NSQMDNDVTPVYLAAQEGH-LEVLKFLVLEAGGSLYVRAK-DGMAPIHAAAQMGCLSCLK 65
+ N +TP+ AA H ++ + L L S+ + K +H A G + +
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLL-LTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 66 WML-----YEACNIFKLTACIILSHYN 87
+L +A NI +A +
Sbjct: 195 LLLEAGANVDAQNIKGESALDLAKQRK 221
Score = 34.3 bits (80), Expect = 0.002
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG 38
++Q + + LA Q ++ ++ L EA
Sbjct: 204 DAQNIKGESALDLAKQRKNVWMINHL-QEAR 233
Score = 25.1 bits (56), Expect = 3.8
Identities = 4/20 (20%), Positives = 5/20 (25%)
Query: 46 KDGMAPIHAAAQMGCLSCLK 65
I A Q G +
Sbjct: 7 DYSTWDIVKATQYGIYERCR 26
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 50.4 bits (122), Expect = 1e-09
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N++ N TP++LAA+ GHLEV+K L LEAG + + K+G P+H AA+ G L
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHL 114
Score = 49.3 bits (119), Expect = 3e-09
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N++ N TP++LAA+ GHLEV+K L LEAG + + K+G P+H AA+ G L
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHL 81
Score = 48.1 bits (116), Expect = 1e-08
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
TP++LAA+ GHLEV+K L LEAG + + K+G P+H AA+ G L
Sbjct: 4 TPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGRTPLHLAARNGHL 48
Score = 35.4 bits (83), Expect = 6e-04
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG 38
N++ N TP++LAA+ GHLEV+K L LEAG
Sbjct: 95 NAKDKNGRTPLHLAARNGHLEVVKLL-LEAG 124
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 52.1 bits (126), Expect = 2e-09
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 8/91 (8%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N+ TP++ AA + +EV L L G + G + + A L +
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLL-LSHGADPTLVNCHGKSAVDMAPTPELRERLTYE 176
Query: 68 L-------YEACNIFKLTACIILSHYNIIRR 91
+ ++
Sbjct: 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQ 207
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+++ + P++ A GH EV + L L+ G + P+H AA +
Sbjct: 85 HAKDKGGLVPLHNACSYGHYEVTELL-LKHGACVNAMDLWQFTPLHEAASKNRV 137
Score = 47.9 bits (115), Expect = 5e-08
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
++ TP++LAA + +++ L L+ G ++ + K G+ P+H A G
Sbjct: 52 HASDGRKSTPLHLAAGYNRVRIVQLL-LQHGADVHAKDKGGLVPLHNACSYGHY 104
Score = 47.5 bits (114), Expect = 7e-08
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N + + +TP+++AA+ H +V++ L + G + G +H AA G L
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVL-HKHGAKMNALDSLGQTALHRAALAGHL 293
Score = 42.1 bits (100), Expect = 5e-06
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 8 NSQMDNDVTPVYLAAQEGH---LEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
Q + T ++ A H +V + L L G ++ + KD M P+H AA+
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELL-LRKGANVNEKNKDFMTPLHVAAERAHN 260
Score = 41.3 bits (98), Expect = 1e-05
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQM 58
N+ T ++ AA GHL+ + L L G + + G +
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLL-LSYGSDPSIISLQGFTAAQMGNEA 323
Score = 40.2 bits (95), Expect = 2e-05
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+ + AA+ G+ E L L+ + + P+H AA + ++
Sbjct: 18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ 75
Score = 39.8 bits (94), Expect = 3e-05
Identities = 7/72 (9%), Positives = 15/72 (20%), Gaps = 20/72 (27%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV--------------------LEAGGSLYVRAKD 47
+ + V +A E L + L + + +
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210
Query: 48 GMAPIHAAAQMG 59
+H A
Sbjct: 211 HETALHCAVASL 222
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 51.7 bits (125), Expect = 2e-09
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+D +P++ AA GH L+ L + G ++ + D ++P+H A G LSC+K
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNL-ISQGWAVNIITADHVSPLHEACLGGHLSCVK 53
Score = 51.3 bits (124), Expect = 2e-09
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N + V+P++ A GHL +K L L+ G + D P+ A G C+
Sbjct: 30 NIITADHVSPLHEACLGGHLSCVKIL-LKHGAQVNGVTADWHTPLFNACVSGSWDCVN 86
Score = 49.0 bits (118), Expect = 2e-08
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 7 ANSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
A+ Q ++D +P++ AA+ GH+E + L + GG++ + P++ A + +C+K
Sbjct: 93 ASVQPESDLASPIHEAARRGHVECVNSL-IAYGGNIDHKISHLGTPLYLACENQQRACVK 151
Score = 48.6 bits (117), Expect = 2e-08
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 7 ANSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
A+ +P++ A+ E+ L ++ G + +G P+
Sbjct: 158 ADVNQGKGQDSPLHAVARTASEELACLL-MDFGADTQAKNAEGKRPVELVPPES 210
Score = 48.2 bits (116), Expect = 3e-08
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N + TP++ A G + + L L+ G S+ D +PIH AA+ G + C+
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLL-LQHGASVQPE-SDLASPIHEAARRGHVECVN 118
Score = 45.9 bits (110), Expect = 2e-07
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYV-RAKDGMAPIHAAAQMGCL 61
+ ++ + TP+YLA + +K L LE+G V + K +P+HA A+
Sbjct: 128 DHKISHLGTPLYLACENQQRACVKKL-LESGAD--VNQGKGQDSPLHAVARTASE 179
Score = 39.7 bits (94), Expect = 3e-05
Identities = 9/58 (15%), Positives = 14/58 (24%), Gaps = 3/58 (5%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
++ PV L E L + LE G + + K
Sbjct: 193 QAKNAEGKRPVELVPPESPLA--QLF-LEREGPPSLMQLCRLRIRKCFGIQQHHKITK 247
Score = 30.1 bits (69), Expect = 0.074
Identities = 2/27 (7%), Positives = 9/27 (33%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ + + H ++ K ++
Sbjct: 224 SLMQLCRLRIRKCFGIQQHHKITKLVL 250
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 50.9 bits (123), Expect = 2e-09
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N Q +P A +G E+L +++ A L + G + AA+ G +
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119
Score = 45.9 bits (110), Expect = 2e-07
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ TP+ +A +E+ K L ++ G + ++ +P A G
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEIAKAL-IDRGADINLQNSISDSPYLYAGAQGRT 85
Score = 42.1 bits (100), Expect = 4e-06
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ + A Q +V + L + + +G P++ A +
Sbjct: 3 TYEVGALLEAANQRDTKKVKEIL-QDTTYQVDEVDTEGNTPLNIAVHNNDI 52
Score = 38.2 bits (90), Expect = 9e-05
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGS-LYVRAKDGMAPIHAAAQMG 59
N + AA++GH++ +K L LE G + + G + A +
Sbjct: 100 NKHNRYGGNALIPAAEKGHIDNVKLL-LEDGREDIDFQNDFGYTALIEAVGLR 151
Score = 37.8 bits (89), Expect = 1e-04
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 8 NSQMDNDVTPVYLAA-----QEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ Q D T + A + + +++K L +E G ++ G + A Q G
Sbjct: 134 DFQNDFGYTALIEAVGLREGNQLYQDIVKLL-MENGADQSIKDNSGRTAMDYANQKGYT 191
Score = 33.2 bits (77), Expect = 0.006
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLV 34
DN T + A Q+G+ E+ K L
Sbjct: 175 DNSGRTAMDYANQKGYTEISKILA 198
Score = 25.5 bits (57), Expect = 3.4
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 43 VRAKDGMAPIHAAAQMGCLSCLKWMLYEACNI 74
++ + A + AA Q + + +
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQV 32
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A
{Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D*
4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P
2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 50.4 bits (122), Expect = 3e-09
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N++ + TP++LAA GHLE+++ L L+ G + GM P+ AA G L
Sbjct: 41 NAEDASGWTPLHLAAFNGHLEIVEVL-LKNGADVNAVDHAGMTPLRLAALFGHL 93
Score = 47.7 bits (115), Expect = 3e-08
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N+ +TP+ LAA GHLE+++ L L+ G + +G P+H AA G L
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEIVEVL-LKNGADVNANDMEGHTPLHLAAMFGHL 126
Score = 47.0 bits (113), Expect = 4e-08
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N+ TP++LAA GHLE+++ L L+ G + + K G + G
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVL-LKNGADVNAQDKFGKTAFDISIDNGNE 159
Score = 44.7 bits (107), Expect = 4e-07
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 12 DNDV-TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+D+ + AA+ G + ++ L + G + G P+H AA G L
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRIL-MANGADVNAEDASGWTPLHLAAFNGHL 60
Score = 32.3 bits (75), Expect = 0.010
Identities = 4/24 (16%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLV 34
D T ++ G+ ++ + L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEILQ 166
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 51.0 bits (123), Expect = 4e-09
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ T +++AA +G+ EVLK L ++A + ++ DG P+HAAA G
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLL-IQARYDVNIKDYDGWTPLHAAAHWGKE 245
Score = 49.8 bits (120), Expect = 9e-09
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N + P++ AA G+L++ ++L + G + +G P+ A + L+
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYL-ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156
Score = 48.7 bits (117), Expect = 2e-08
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N + +T ++ A + +++++KFL +E G ++ +G P+HAAA G L
Sbjct: 67 NYANVDGLTALHQACIDDNVDMVKFL-VENGANINQPDNEGWIPLHAAASCGYL 119
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYE 70
+++ TP+ +A +E E+L+ V G D A ++ +W+
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQG-------VDIEAARKEEERIMLRDARQWLNSG 188
Query: 71 ACNI 74
N
Sbjct: 189 HIND 192
Score = 43.6 bits (104), Expect = 1e-06
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
N + + TP++ AA G E + L +E + K G A +
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRIL-VENLCDMEAVNKVGQTAFDVADE 274
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+D A G E + L LE G + DG+ +H A +
Sbjct: 38 FDDGAVFLAACSSGDTEEVLRL-LERGADINYANVDGLTALHQACIDDNV 86
Score = 36.7 bits (86), Expect = 3e-04
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 9 SQMDNDV-TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
++ D+ + + ++L + AK G +H AA G
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWL-NSGHINDVRHAKSGGTALHVAAAKGYT 212
Score = 35.9 bits (84), Expect = 8e-04
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 7/77 (9%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLY-----E 70
L G L+ + V+ DG AA G + +L
Sbjct: 10 RNEQLKRWIGSETDLEPP-VVKRKKTKVKFDDGAVF-LAACSSGDTEEVLRLLERGADIN 67
Query: 71 ACNIFKLTACIILSHYN 87
N+ LTA +
Sbjct: 68 YANVDGLTALHQACIDD 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 49.0 bits (118), Expect = 4e-09
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
PV+ AA+EG L+ L L AG L V G P+ A + G +
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVL-HRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128
Score = 49.0 bits (118), Expect = 5e-09
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
+ + + AA G +E ++ L LEAG + G PI
Sbjct: 6 HMLGGSSDAGLATAAARGQVETVRQL-LEAGADPNALNRFGRRPIQVMMM 54
Score = 45.5 bits (109), Expect = 1e-07
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGM-APIHAAAQMGCLSCLK 65
N+ P+ + G +V + L L G + P+H AA+ G L L
Sbjct: 39 NALNRFGRRPIQVMMM-GSAQVAELL-LLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95
Score = 37.4 bits (88), Expect = 1e-04
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG 38
+ PV LA ++GH ++ ++L A
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYL-HAAT 134
Score = 25.1 bits (56), Expect = 4.1
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 37 AGGSLYVRAKDGMAPIHAAAQMGCLSCLKWML 68
+++ A + AA G + ++ +L
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLL 32
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 50.2 bits (121), Expect = 6e-09
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+ Q D T ++LAA G ++ L AG + V + G +H A ++ +C
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKL-YAAGAGVLVAERGGHTALHLACRVRAHTCAC 95
Score = 47.2 bits (113), Expect = 7e-08
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
++M TP+ A + + + L G D ++P ++
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLL-RAHGAPEPEDGGDKLSPCSSSGSDSDS 271
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 12 DNDV--TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ TP++LA + VL+ L L+AG R G P+ +A
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELL-LKAGADPTARMYGGRTPLGSALLRPNP 238
Score = 43.7 bits (104), Expect = 1e-06
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGCLSCLK 65
++ T ++LA H L FL+ + G Y+ ++ G +H AA +G S ++
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD-GMAPIHAAAQMGCLSCLK 65
++ + TP+++A E+++ L +AG L G P+H A + S L+
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLL-RDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Score = 39.8 bits (94), Expect = 3e-05
Identities = 10/56 (17%), Positives = 16/56 (28%)
Query: 6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
S + D P + +Q + + L DG P+H A
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA 171
Score = 39.1 bits (92), Expect = 5e-05
Identities = 10/78 (12%), Positives = 15/78 (19%), Gaps = 2/78 (2%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
T ++LA + L L+ S A D S
Sbjct: 72 LVAERGGHTALHLACRVRAHTCACVL-LQPRPSHPRDASDTYLTQSQDCT-PDTSHAPAA 129
Query: 68 LYEACNIFKLTACIILSH 85
+ N
Sbjct: 130 VDSQPNPENEEEPRDEDW 147
Score = 30.6 bits (70), Expect = 0.058
Identities = 1/22 (4%), Positives = 7/22 (31%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEV 29
+ ++P + + +
Sbjct: 252 PEDGGDKLSPCSSSGSDSDSDN 273
Score = 26.0 bits (58), Expect = 2.0
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 46 KDGMAPIHAAAQMGCLSCLKWML 68
+DG +H A L ++L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLL 29
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 50.3 bits (120), Expect = 7e-09
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAK--DGMAPIHAAAQMGCLSCLK 65
+ LAA+ GHL VL L E + + + AA+ G L L
Sbjct: 122 KVIQAENYQAFRLAAENGHLHVLNRL-CELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 180
Query: 66 WMLYEACNI 74
+ A
Sbjct: 181 RLCELAPTE 189
Score = 39.5 bits (92), Expect = 4e-05
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 16 TPVYLAAQEGH---LEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWML 68
++AA G L+ L L L + + V + AA+ G L L +
Sbjct: 94 VICFVAAITGCSSALDTLCLL-LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 148
Score = 37.2 bits (86), Expect = 3e-04
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV-------LEAGGSLYVRAKDGMAPIHAAAQ 57
+ + + LA + G+ L+ L + Y+ G + A A
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVAL 369
Score = 35.7 bits (82), Expect = 0.001
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 8/82 (9%)
Query: 6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+A Q +N + A GH V+ FL L+ A IH + G
Sbjct: 191 TAMIQAENYYAFRWAAVGRGHHNVINFL-LDCP------VMLAYAEIH-EFEYGEKYVNP 242
Query: 66 WMLYEACNIFKLTACIILSHYN 87
++ + ++ LS+ +
Sbjct: 243 FIARHVNRLKEMHDAFKLSNPD 264
Score = 33.4 bits (76), Expect = 0.007
Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 3 YEMSANSQMDNDVTPVYLAAQ---EGHLEVLKFLV----LEAGGSLYVRAKDGMAPIHAA 55
+++ S+ + + E L+ ++FL+ ++A D + A
Sbjct: 267 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 326
Query: 56 AQMGCLSCLKWML 68
++G +L
Sbjct: 327 LRLGNQGACALLL 339
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 48.6 bits (117), Expect = 7e-09
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N+ + +P++ AA+ GH++++K L L G S G+ P+ S L
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLL-LSYGASRNAVNIFGLRPVDYTDDESMKSLLL 126
Score = 47.8 bits (115), Expect = 1e-08
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
D+ TP++ A GHL+V++ L L+ + +P+H AA+ G +
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELL-LQHKALVNTTGYQNDSPLHDAAKNGHV 89
Score = 46.6 bits (112), Expect = 4e-08
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 7 ANSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ ++ T +++A+ +G + +++L L+ G V+ G P+H A G L
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYL-LQNGSDPNVKDHAGWTPLHEACNHGHL 56
Score = 32.4 bits (75), Expect = 0.009
Identities = 4/23 (17%), Positives = 7/23 (30%), Gaps = 1/23 (4%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFL 33
+ + PV E +L
Sbjct: 106 NIFGLRPVDYTDDESMKSLLLLP 128
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 49.8 bits (120), Expect = 9e-09
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMA-PIHAAAQMGCLSCLKW 66
+ D T +Y A G+++ +K ++ L K G + A + +S + +
Sbjct: 89 SQFDDKGNTALYYAVDSGNMQTVKLF-VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY 147
Query: 67 MLYEACNIFK----LTACIILSHYN 87
L E + F L+ I
Sbjct: 148 FLSEIPSTFDLAILLSCIHITIKNG 172
Score = 49.1 bits (118), Expect = 2e-08
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 7 ANSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAP-IHAAAQMGCLSCL 64
++ ++ +++ + GH++++ L L+ S P I A + L
Sbjct: 153 PSTFDLAILLSCIHITIKNGHVDMMILL-LDYMTSTNTNNSLLFIPDIKLAIDNKDIEML 211
Query: 65 K 65
+
Sbjct: 212 Q 212
Score = 48.3 bits (116), Expect = 3e-08
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ + Y A + ++ ++ L L AG + P+H AA +
Sbjct: 25 FKADVHGHSASYYAIADNNVRLVCTL-LNAGAL--KNLLENEFPLHQAATLEDT 75
Score = 47.9 bits (115), Expect = 4e-08
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+N+ P++ AA +++K L L +G G ++ A G + +K
Sbjct: 61 ENE-FPLHQAATLEDTKIVKIL-LFSGLDDSQFDDKGNTALYYAVDSGNMQTVK 112
Score = 36.4 bits (85), Expect = 5e-04
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 9/55 (16%)
Query: 8 NSQMDNDVTPV-YLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N+ P LA +E+L+ L + + + +
Sbjct: 188 NTNNSLLFIPDIKLAIDNKDIEMLQAL-FKYDI-------NIYSANLENVLLDDA 234
Score = 34.0 bits (79), Expect = 0.004
Identities = 4/41 (9%), Positives = 9/41 (21%), Gaps = 1/41 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
+ E+ K + +E + I
Sbjct: 223 SANLENVLLDDAEIAKMI-IEKHVEYKSDSYTKDLDIVKNN 262
Score = 28.6 bits (65), Expect = 0.23
Identities = 4/42 (9%), Positives = 11/42 (26%), Gaps = 2/42 (4%)
Query: 20 LAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ LK + + + G + + A +
Sbjct: 5 SRINTWKSKQLKSFL--SSKDTFKADVHGHSASYYAIADNNV 44
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 49.5 bits (119), Expect = 1e-08
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ D +T ++ A GH E++KFLV + G ++ DG P+H AA +
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNNV 116
Score = 48.4 bits (116), Expect = 2e-08
Identities = 6/50 (12%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ + ++ EG ++++ + + + +G+ +H A G
Sbjct: 35 PLPLALLLDSSLEGEFDLVQRI-IYEVDDPSLPNDEGITALHNAVCAGHT 83
Score = 44.1 bits (105), Expect = 8e-07
Identities = 8/83 (9%), Positives = 23/83 (27%), Gaps = 10/83 (12%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD-GMAPIHAAAQMGCLSCLKWMLY 69
+ + + + + G V+ +A + ++ G ++ ++Y
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSER-IAHGMR--VKFNPLPLALLLDSSLEGEFDLVQRIIY 58
Query: 70 -----EACNIFKLTACIILSHYN 87
N +TA
Sbjct: 59 EVDDPSLPNDEGITALHNAVCAG 81
Score = 43.8 bits (104), Expect = 1e-06
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD-----GMAPIHAAAQMGCLSCLK 65
D+D TP++ AA +++V KFL +E+G + V A A + G C +
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFL-VESGAA--VFAMTYSDMQTAADKCEEMEEGYTQCSQ 156
Score = 39.1 bits (92), Expect = 5e-05
Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
+EG+ + +FL + + K + +
Sbjct: 141 ADKCEEMEEGYTQCSQFL-YGVQEKMGIMNKGVIYALWDYEPQN 183
Score = 24.9 bits (55), Expect = 5.0
Identities = 1/24 (4%), Positives = 6/24 (25%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLK 31
+ ++ + E+
Sbjct: 166 GIMNKGVIYALWDYEPQNDDELPM 189
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 49.4 bits (119), Expect = 1e-08
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N + VT ++LA + EV +FL +E G S+ ++ K P+H AA +G L
Sbjct: 101 NKITNQGVTCLHLAVGKKWFEVSQFL-IENGASVRIKDKFNQIPLHRAASVGSL 153
Score = 46.3 bits (111), Expect = 1e-07
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVL-EAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ D+ TP ++A G+LEV+K L L G+ +H A
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Score = 45.9 bits (110), Expect = 2e-07
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
D TP++ A EGH + LV + G + G A
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217
Score = 44.0 bits (105), Expect = 1e-06
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGCL 61
+ + P++ AA G L++++ L G S V +D G P+ A G
Sbjct: 134 RIKDKFNQIPLHRAASVGSLKLIELL-CGLGKS-AVNWQDKQGWTPLFHALAEGHG 187
Score = 43.2 bits (103), Expect = 2e-06
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSL---YVRAKDGMAPIHAAAQMGCL 61
+ + P++ + E+ FL L ++ G P H A +G L
Sbjct: 30 LQKDQDGRIPLHWSVSFQAHEITSFL-LSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Score = 42.8 bits (102), Expect = 3e-06
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
P++ A E ++ L+ L + +DG P+H +
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 49
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 49.5 bits (119), Expect = 1e-08
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N Q + TP++LA E+ + L L AG +R G P+H A + GCL+ +
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEAL-LGAGCDPELRDFRGNTPLHLACEQGCLASVG 95
Score = 48.3 bits (116), Expect = 2e-08
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV-----LEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
+ TP++LA ++G L + L L +G +H A+ G L
Sbjct: 72 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 131
Query: 63 CLK 65
++
Sbjct: 132 IVE 134
Score = 43.3 bits (103), Expect = 2e-06
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
T ++LA + +++ L L+ G + G +P
Sbjct: 153 TALHLAVDLQNPDLVSLL-LKCGADVNRVTYQGYSPYQLTWGRPST 197
Score = 41.4 bits (98), Expect = 7e-06
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAK-DGMAPIHAAAQMGCLSCLK 65
+ N T ++LA+ G+L +++ L + G + + +G +H A + +
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELL-VSLGADVNAQEPCNGRTALHLAVDLQNPDLVS 168
Score = 36.0 bits (84), Expect = 6e-04
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 10 QMDND-VTPVYLAAQEGH----LEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
Q+ D + ++LA +EV++ + L + P+H A
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQV-KGDLAFLNFQNNLQQTPLHLAVITNQP 58
Score = 35.6 bits (83), Expect = 0.001
Identities = 4/54 (7%), Positives = 10/54 (18%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N +P L + + L + + +
Sbjct: 178 NRVTYQGYSPYQLTWGRPSTRIQQQL-GQLTLENLQMLPESEDEESYDTESEFT 230
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 49.1 bits (117), Expect = 1e-08
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
+ T ++ A GH E+++FL L+ G + + G +P+H AA G +K +
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFL-LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKAL 92
Query: 68 LYEACNI 74
L + ++
Sbjct: 93 LVKGAHV 99
Score = 45.2 bits (107), Expect = 3e-07
Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
+ + +++ D T ++ AA +G+L+++ L L S ++ +G P+H A
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL-LFYKASTNIQDTEGNTPLHLACDEER 184
Query: 61 LSCLKWMLYEACNI 74
+ K+++ + +I
Sbjct: 185 VEEAKFLVTQGASI 198
Score = 41.8 bits (98), Expect = 5e-06
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+++ LA E+ + + L +D +H A G
Sbjct: 5 VSNIMICNLAYSGKLDELKERI-LADKSLATRTDQDSRTALHWACSAGHT 53
Score = 38.3 bits (89), Expect = 1e-04
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
+ Y+ S N Q TP++LA E +E KFLV G S+Y+ K+ P+ A
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQGASIYIENKEEKTPLQVAK 213
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 48.4 bits (116), Expect = 3e-08
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N+ ++ TP+ LA ++ +L ++AG + K + +H AA +
Sbjct: 160 NAMDCDENTPLMLAVLARRRRLVAYL-MKAGADPTIYNKSERSALHQAAANRDFGMMV 216
Score = 48.4 bits (116), Expect = 3e-08
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ Q ++ TP+ LAAQEG +EV+ +L ++ G S+ A
Sbjct: 307 DKQDEDGKTPIMLAAQEGRIEVVMYL-IQQGASVEAVDATDHTARQLAQANNHH 359
Score = 48.0 bits (115), Expect = 4e-08
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
T ++ AAQ ++ ++K+LV E G + + +DG PI AAQ G +
Sbjct: 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI 326
Score = 46.5 bits (111), Expect = 2e-07
Identities = 6/56 (10%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV--LEAGGSLYVRAKDGMAPIHAAAQMGCL 61
++ + ++ AA ++ +++ + G + ++GM + A
Sbjct: 193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR 248
Score = 43.4 bits (103), Expect = 2e-06
Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 7/57 (12%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLY-------VRAKDGMAPIHAAAQMGCL 61
++ T ++ A E + L++ D P+ A
Sbjct: 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRR 179
Score = 41.5 bits (98), Expect = 9e-06
Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 6/84 (7%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N + P G+ + F + +H A G + + +
Sbjct: 55 NELQHYSLYPNPQGYGNGNDFLGDFN-HTNLQIPTEPEPESPIKLHTEAA-GSYAITEPI 112
Query: 68 LYEACNIFK----LTACIILSHYN 87
E+ NI T ++ +
Sbjct: 113 TRESVNIIDPRHNRTVLHWIASNS 136
Score = 41.1 bits (97), Expect = 1e-05
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVL---KFLV-----LEAGGSLYVRAKD--GMAPIHAAAQ 57
N +T + + A + + K LV ++ G+ ++ G +H AAQ
Sbjct: 229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ 288
Query: 58 MGCL 61
+ +
Sbjct: 289 VSNM 292
Score = 32.6 bits (75), Expect = 0.010
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ D T LA H ++
Sbjct: 340 EAVDATDHTARQLAQANNHHNIVDIFD 366
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 47.4 bits (114), Expect = 3e-08
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
+ + ++ AA+ G L+ L+ L LE + + +G P+H AA+ G L ++++
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTL-LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 68 L-YEACNI-----FKLTACIILSHYN 87
+ + A N+ TAC + Y
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYG 148
Score = 43.5 bits (104), Expect = 1e-06
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
DN+ P++LAA+EGHL V++FLV ++ R G A G
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150
Score = 42.0 bits (100), Expect = 3e-06
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N+Q T + + G+ E+ + L L G + ++ + G A IH AA+ G L
Sbjct: 32 NAQNGFGRTALQVMK-LGNPEIARRL-LLRGANPDLKDRTGFAVIHDAARAGFL 83
Score = 39.3 bits (93), Expect = 4e-05
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
+ + AA G LE L L L+ ++ + G +
Sbjct: 3 EPWGNELASAAARGDLEQLTSL-LQNNVNVNAQNGFGRTALQVMKL 47
Score = 30.8 bits (71), Expect = 0.032
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLV 34
++ T LA G EV+ +
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQ 157
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 47.8 bits (115), Expect = 3e-08
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+ + TP++LA V++ L + AG S + G H A + +CL+
Sbjct: 40 DIYNNLRQTPLHLAVITTLPSVVRLL-VTAGASPMALDRHGQTAAHLACEHRSPTCLR 96
Score = 45.9 bits (110), Expect = 2e-07
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLE-AGGSLYVRAKD--GMAPIHAAAQMGCLSCL 64
+ + T +LA + L+ L+ A G+L + A++ G+ +H A C +
Sbjct: 73 MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 132
Query: 65 K 65
+
Sbjct: 133 Q 133
Score = 45.9 bits (110), Expect = 2e-07
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
N+QM + + ++ A+ G L +++ L + +G ++ P+ A + L+
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTL-VRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 45.1 bits (108), Expect = 4e-07
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+P+ A + L +++ L L+ G ++ + G + +H+A+ G L
Sbjct: 152 SPLIHAVENNSLSMVQLL-LQHGANVNAQMYSGSSALHSASGRGLL 196
Score = 44.0 bits (105), Expect = 1e-06
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 7 ANSQMDNDVTPVYLAAQEGHLEVLKFLV---LEAGGSLYVRAKDGMAPIHAAAQMGCL 61
A ++ TP+++A +G+L + LV + G L + P+H A
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP 59
Score = 43.2 bits (103), Expect = 2e-06
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVR-AKDGMAPIHAAAQMGCL 61
++ + +T +++A E ++ L LE G + K G +P+ A + L
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLL-LERGADIDAVDIKSGRSPLIHAVENNSL 163
Score = 32.4 bits (75), Expect = 0.010
Identities = 4/27 (14%), Positives = 14/27 (51%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ + ++ TP+ +A +++L+
Sbjct: 210 SLKNCHNDTPLMVARSRRVIDILRGKA 236
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 48.0 bits (115), Expect = 3e-08
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ + +T ++ A + ++ FL + AG ++ G P+H AA
Sbjct: 48 SQPNEEGITALHNAICGANYSIVDFL-ITAGANVNSPDSHGWTPLHCAASCNDT 100
Score = 42.6 bits (101), Expect = 2e-06
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N + + AA G LEV++ ++ ++G+ +H A
Sbjct: 20 NPLVLLLDAALTGELEVVQQA-VKEMNDPSQPNEEGITALHNAICGANY 67
Score = 40.3 bits (95), Expect = 2e-05
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVR-AKDGMAPIHAAAQM 58
D+ TP++ AA + LV + G +++ DG
Sbjct: 84 DSHGWTPLHCAASCNDTVICMALV-QHGAAIFATTLSDGATAFEKCDPY 131
Score = 35.7 bits (83), Expect = 0.001
Identities = 6/53 (11%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 8 NSQMDND-VTPVYLAA--QEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
+ +D T +EG+ + +L + S+ + + + +
Sbjct: 114 FATTLSDGATAFEKCDPYREGYADCATYL-ADVEQSMGLMNSGAVYALWDYSA 165
Score = 34.5 bits (80), Expect = 0.002
Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 2/54 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
V ++ + E E+ ++ R AA G
Sbjct: 150 GLMNSGAVYALWDYSAEFGDELS--FREGESVTVLRRDGPEETDWWWAALHGQE 201
Score = 27.6 bits (62), Expect = 0.52
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 7 ANSQMDNDVTPVYLAAQEGHLEV 29
+ + T + AA G
Sbjct: 181 VLRRDGPEETDWWWAALHGQEGY 203
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 47.1 bits (113), Expect = 1e-07
Identities = 15/63 (23%), Positives = 25/63 (39%)
Query: 3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
+ T + AA++GH+EVLK L+ E G + G + A S
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196
Query: 63 CLK 65
++
Sbjct: 197 DVE 199
Score = 46.7 bits (112), Expect = 1e-07
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+ N TP LAA G +++LK L G + G AA G + LK
Sbjct: 66 VLRKKNGATPFLLAAIAGSVKLLKLF-LSKGADVNECDFYGFTAFMEAAVYGKVKALK 122
Score = 45.9 bits (110), Expect = 2e-07
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N + + TP+ LA ++ HL +++ L+ + + DG + A ++
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK 266
Score = 45.5 bits (109), Expect = 3e-07
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+ TP++ A Q ++++ L L G +R K+G P AA G + LK
Sbjct: 37 EGGWTPLHNAVQMSREDIVELL-LRHGADPVLRKKNGATPFLLAAIAGSVKLLK 89
Score = 45.5 bits (109), Expect = 3e-07
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 9/63 (14%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVL---------EAGGSLYVRAKDGMAPIHAAAQM 58
N T AA G ++ LKFL + K G + AA+
Sbjct: 99 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158
Query: 59 GCL 61
G +
Sbjct: 159 GHV 161
Score = 39.4 bits (93), Expect = 4e-05
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD---GMAPIHAAAQMGCL 61
D + A Q +++++ L LE G + V ++ G P+H A QM
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQL-LEGGAN--VNFQEEEGGWTPLHNAVQMSRE 52
Score = 38.2 bits (90), Expect = 1e-04
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 8 NSQMDNDVTPVYLAAQEGH----LEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N+ + + A + L L+ G + VR + G P+ A + L
Sbjct: 176 NACDNMGRNALIHALLSSDDSDVEAITHLL-LDHGADVNVRGERGKTPLILAVEKKHL 232
Score = 32.4 bits (75), Expect = 0.013
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV 34
N + T + LA + ++ + L
Sbjct: 247 NDTDSDGKTALLLAVELKLKKIAELLC 273
Score = 24.0 bits (53), Expect = 9.6
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 45 AKDGMAPIHAAAQMGCLSCLK 65
A + + A Q + ++
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQ 22
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 45.9 bits (110), Expect = 2e-07
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+++M + TP+ LAA+ +L+ L + + + G + +H AA + +
Sbjct: 86 DARMHDGTTPLILAARLAVEGMLEDL-INSHADVNAVDDLGKSALHWAAAVNNV 138
Score = 45.5 bits (109), Expect = 3e-07
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N+ D + ++ AA +++ L L+ G + ++ P+ AA+ G
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVL-LKNGANKDMQNNREETPLFLAAREGSY 171
Score = 45.1 bits (108), Expect = 3e-07
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N Q + TP++ A V + L+ L R DG P+ AA++
Sbjct: 52 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 105
Score = 43.9 bits (105), Expect = 9e-07
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ Q + + TP++LAA+EG E K L L+ + + P A +
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVL-LDHFANRDITDHMDRLPRDIAQERMHH 204
Score = 43.6 bits (104), Expect = 1e-06
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N T ++LAA+ + K L LEA ++ G P+HAA
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRL-LEASADANIQDNMGRTPLHAAVSADAQ 71
Score = 31.2 bits (72), Expect = 0.028
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ D P +A + H ++++ L
Sbjct: 185 DITDHMDRLPRDIAQERMHHDIVRLLD 211
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 45.9 bits (110), Expect = 2e-07
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+++M + TP+ LAA+ +L+ L + + + G + +H AA + +
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDL-INSHADVNAVDDLGKSALHWAAAVNNV 170
Score = 45.2 bits (108), Expect = 4e-07
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N Q + TP++ A V + L+ L R DG P+ AA++
Sbjct: 84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 137
Score = 44.4 bits (106), Expect = 8e-07
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ Q + + TP++LAA+EG E K L L+ + + P A +
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVL-LDHFANRDITDHMDRLPRDIAQERMHH 236
Score = 43.6 bits (104), Expect = 1e-06
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N T ++LAA+ + K L LEA ++ G P+HAA
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRL-LEASADANIQDNMGRTPLHAAVSADAQ 103
Score = 42.5 bits (101), Expect = 4e-06
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N+ D + ++ AA +++ L L+ G + ++ P+ AA+ G
Sbjct: 151 NAVDDLGKSALHWAAAVNNVDAAVVL-LKNGANKDMQNNREETPLFLAAREGSY 203
Score = 35.9 bits (84), Expect = 7e-04
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 9 SQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLY-VRAKDGMAPIHAAAQMGCL 61
S + +E V+ + G SL+ + G +H AA+
Sbjct: 18 SCSGGGLETGNSEEEEDAPAVISDF-IYQGASLHNQTDRTGETALHLAARYSRS 70
Score = 33.6 bits (78), Expect = 0.004
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLE 36
+ D P +A + H ++++ L LE
Sbjct: 217 DITDHMDRLPRDIAQERMHHDIVRLLDLE 245
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 45.1 bits (108), Expect = 2e-07
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+++ D TP+++AA EGH +++ L L+ G + + M +H A +
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVL-LKHGADVNAKDMLKMTALHWATEHNHQ 113
Score = 43.9 bits (105), Expect = 5e-07
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
D +P++LAAQ GH + L L AG S R K P+H AA G
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVL-LRAGVSRDARTKVDRTPLHMAASEGHA 80
Score = 42.4 bits (101), Expect = 2e-06
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
D +T ++ A + H EV++ L ++ G ++ ++K + G
Sbjct: 97 DMLKMTALHWATEHNHQEVVELL-IKYGADVHTQSKFCKTAFDISIDNGNE 146
Score = 35.8 bits (84), Expect = 6e-04
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 12/51 (23%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-----KDGMAPIHAAAQMGCL 61
+ AA+ G + ++ L + G A G +P+H AAQ G
Sbjct: 4 KKLLEAARAGQDDEVRIL-MANG------APFTTDWLGTSPLHLAAQYGHF 47
Score = 30.8 bits (71), Expect = 0.034
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFL 33
++Q T ++ G+ ++ + L
Sbjct: 127 HTQSKFCKTAFDISIDNGNEDLAEIL 152
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin
repeat, chromodomain, aromatic CAGE, signal recognit
particle, protein targeting; 3.18A {Arabidopsis
thaliana} PDB: 1x3q_A 2hug_A
Length = 244
Score = 45.7 bits (109), Expect = 3e-07
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWML 68
TP + AA++ + L L+ + ++G + A +G C++ +
Sbjct: 43 SEYETPWWTAARKADEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLA 97
Score = 45.3 bits (108), Expect = 3e-07
Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 8 NSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW 66
+ + +T +++AA EV++ L +E G + V + G+ + A ++ +
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEAL-VELGADIEVEDERGLTALELAREILKTTPKGN 162
Query: 67 MLYEACNI--FKLTACIILSHYNI 88
+ I K+ + +
Sbjct: 163 PMQFGRRIGLEKVINVLEGQVFEY 186
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVR-AKDGMAPIHAAAQMGCLSCLK 65
++ +N T + A G + ++ L EAG L R + G+ +H AA ++
Sbjct: 71 DAVDENGRTALLFVAGLGSDKCVRLL-AEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Score = 39.1 bits (92), Expect = 5e-05
Identities = 7/67 (10%), Positives = 17/67 (25%), Gaps = 4/67 (5%)
Query: 2 TYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
++ + + ++GH + + P AA+
Sbjct: 3 VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPS-SYIAADV---VSEYETPWWTAARKADE 58
Query: 62 SCLKWML 68
L +L
Sbjct: 59 QALSQLL 65
Score = 33.7 bits (78), Expect = 0.004
Identities = 6/54 (11%), Positives = 13/54 (24%), Gaps = 3/54 (5%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ YL + + + + AKD + A +
Sbjct: 193 VEKRGKGKDVEYLVRWKDGGDCEWVKGVH--VAE-DVAKDYEDGLEYAVAESVI 243
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP
system, signal sequence, ankyrin repeat, chromodomain,
type I turn; 1.50A {Arabidopsis thaliana} SCOP:
b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 44.8 bits (107), Expect = 4e-07
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
TP + AA++ + L L+ + ++G + A +G C++
Sbjct: 42 SEYETPWWTAARKADEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVR 93
Score = 44.0 bits (105), Expect = 7e-07
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 8 NSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW 66
+ + +T +++AA EV++ L +E G + V + G+ + A ++ +
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEAL-VELGADIEVEDERGLTALELAREILKTTPKGN 161
Query: 67 MLYEACNI 74
+ I
Sbjct: 162 PMQFGRRI 169
Score = 43.3 bits (103), Expect = 1e-06
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVR-AKDGMAPIHAAAQMGCLSCLK 65
++ +N T + A G + ++ L EAG L R + G+ +H AA ++
Sbjct: 70 DAVDENGRTALLFVAGLGSDKCVRLL-AEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Score = 40.9 bits (97), Expect = 9e-06
Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 4/65 (6%)
Query: 4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSC 63
++ + + ++GH + + P AA+
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPS-SYIAADV---VSEYETPWWTAARKADEQA 59
Query: 64 LKWML 68
L +L
Sbjct: 60 LSQLL 64
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction,
substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A
{Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A
3twx_A 3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 43.5 bits (104), Expect = 9e-07
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 7 ANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
TP++ AA + V+++L L+ G ++ + K G+ P+H A G
Sbjct: 35 CRDIEGRQSTPLHFAAGYNRVSVVEYL-LQHGADVHAKDKGGLVPLHNACSYGHY 88
Score = 42.4 bits (101), Expect = 2e-06
Identities = 10/50 (20%), Positives = 17/50 (34%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ AA+ G +E +K L + P+H AA +
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRV 55
Score = 42.0 bits (100), Expect = 4e-06
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+++ + P++ A GH EV + L ++ G + V P+H AA G
Sbjct: 69 HAKDKGGLVPLHNACSYGHYEVAELL-VKHGAVVNVADLWKFTPLHEAAAKGKY 121
Score = 38.5 bits (91), Expect = 6e-05
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
D TP++ AA +G E+ K L L+ G + +DG P+
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLL-LQHGADPTKKNRDGNTPLDLVK 149
Score = 25.0 bits (56), Expect = 3.4
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLV 34
+ D TP+ L +G ++ L
Sbjct: 138 NRDGNTPLDLVK-DGDTDIQDLLR 160
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 44.0 bits (104), Expect = 9e-07
Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
+ + + + + + + +G L++ L + G+ P+ AA+ G +
Sbjct: 177 HALVMIADNSPENSALVIHMYDGLLQMGARL-CPTVQLEEISNHQGLTPLKLAAKEGKIE 235
Query: 63 CLKWML 68
+ +L
Sbjct: 236 IFRHIL 241
Score = 38.6 bits (90), Expect = 9e-05
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGC 60
P+ LAA +V+ +L+ + A D G +HA +
Sbjct: 138 LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184
Score = 36.3 bits (84), Expect = 5e-04
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-------------KDGMAPI 52
+ + +++A ++ L+ +K L +E G +++RA G P+
Sbjct: 82 QCTDEFYQGHSALHIAIEKRSLQCVKLL-VENGADVHLRACGRFFQKHQGTCFYFGELPL 140
Query: 53 HAAAQMGCLSCLKWML 68
AA + ++L
Sbjct: 141 SLAACTKQWDVVTYLL 156
Score = 30.1 bits (68), Expect = 0.071
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 15/73 (20%)
Query: 16 TPVYLAA---QEGHLEVLKFLVLEAGGSLYV-----------RAKDGMAPIHAAAQMGCL 61
T + A Q+G + L L+ G + +H A + L
Sbjct: 45 TCLMKAVLNLQDGVNACIMPL-LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSL 103
Query: 62 SCLKWMLYEACNI 74
C+K ++ ++
Sbjct: 104 QCVKLLVENGADV 116
Score = 29.4 bits (66), Expect = 0.15
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 10/70 (14%)
Query: 14 DVTPVYLAAQEGHLEVLKFLV-------LEAGGSLYVRAKDGMAPIHAAA---QMGCLSC 63
D ++ G E L L+ S Y G + A Q G +C
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 64 LKWMLYEACN 73
+ +L +
Sbjct: 62 IMPLLQIDKD 71
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 44.0 bits (104), Expect = 1e-06
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
+ +TP+ LAA G + VL ++ L+ HAAA
Sbjct: 230 NRKGLTPLALAASSGKIGVLAYI-LQRE-------IHEPECRHAAAHHH 270
Score = 43.6 bits (103), Expect = 1e-06
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMG 59
P+ LAA L ++KFL+ + + A+D G +HA ++
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA 195
Score = 42.1 bits (99), Expect = 5e-06
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 15/77 (19%)
Query: 6 SANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--------------GMAP 51
S T +++A + ++ ++ L +E G + A G P
Sbjct: 93 SYTDSYYKGQTALHIAIERRNMTLVTLL-VENGADVQAAANGDFFKKTKGRPGFYFGELP 151
Query: 52 IHAAAQMGCLSCLKWML 68
+ AA L+ +K++L
Sbjct: 152 LSLAACTNQLAIVKFLL 168
Score = 35.1 bits (81), Expect = 0.001
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 15/76 (19%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEV--------LKFLVLEAGGSLY-------VRAKDGMAPI 52
+++ T ++ + V + +L G L+ + + G+ P+
Sbjct: 178 SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPL 237
Query: 53 HAAAQMGCLSCLKWML 68
AA G + L ++L
Sbjct: 238 ALAASSGKIGVLAYIL 253
Score = 29.4 bits (66), Expect = 0.15
Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 10/80 (12%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-------KDGMAPIHAA---AQMGCL 61
D ++ A + + + L+ L+ S + G + A G
Sbjct: 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQN 70
Query: 62 SCLKWMLYEACNIFKLTACI 81
+ +L A L +
Sbjct: 71 DTIALLLDVARKTDSLKQFV 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 42.4 bits (101), Expect = 1e-06
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N++ + +TP+YLA GHLE+++ L L+ G + G P+H AA +G L
Sbjct: 41 NAKDEYGLTPLYLATAHGHLEIVEVL-LKNGADVNAVDAIGFTPLHLAAFIGHL 93
Score = 41.6 bits (99), Expect = 4e-06
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N+ TP++LAA GHLE+ + L L+ G + + K G + G
Sbjct: 74 NAVDAIGFTPLHLAAFIGHLEIAEVL-LKHGADVNAQDKFGKTAFDISIGNGNE 126
Score = 40.1 bits (95), Expect = 1e-05
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ + + AA+ G + ++ L + G + + + G+ P++ A G L
Sbjct: 8 HHHGSDLGKKLLEAARAGQDDEVRIL-MANGADVNAKDEYGLTPLYLATAHGHL 60
Score = 30.0 bits (69), Expect = 0.061
Identities = 4/23 (17%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFL 33
D T ++ G+ ++ + L
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEIL 132
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 43.1 bits (101), Expect = 2e-06
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 8 NSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMG 59
N +D TP++ +LE++K L ++ G + G + + A +
Sbjct: 124 NIPVDEHGNTPLHWLTSIANLELVKHL-VKHGSNRLYGDNMGESCLVKAVKSV 175
Score = 41.6 bits (97), Expect = 9e-06
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQM 58
N+Q N T + +AA+ G++ ++ L L+ G ++ K G+ P+ A +
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDAL-LDYGADPFIANKSGLRPVDFGAGL 326
Score = 29.2 bits (65), Expect = 0.18
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGCLSCLKWML 68
+ + E +L+ L L+ + + A+D G ++ AA++G +S + +L
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 303
Score = 25.8 bits (56), Expect = 3.2
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 46 KDGMAPIHAAAQMGCLSCLKWMLYEACNI 74
+ G P+H + L +K ++ N
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNR 157
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 42.0 bits (100), Expect = 4e-06
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ T + A + L + + L L G ++ + G P+ + G
Sbjct: 62 EDKDIEGSTALIWAVKNNRLGIAEKL-LSKGSNVNTKDFSGKTPLMWSIIFGYS 114
Score = 40.8 bits (97), Expect = 9e-06
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ N + + TP+ +A G + L +E L + +G + A + L
Sbjct: 25 DFLRNYRDSYNRTPLMVACMLGMENAIDKL-VENFDKLEDKDIEGSTALIWAVKNNRL 81
Score = 40.5 bits (96), Expect = 1e-05
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N++ + TP+ + G+ E+ FL LE G ++ R +G P+ A++ G
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFL-LEHGANVNDRNLEGETPLIVASKYGRS 147
Score = 39.3 bits (93), Expect = 4e-05
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
N + TP+ +A++ G E++K L LE G + R G+ +A G
Sbjct: 128 NDRNLEGETPLIVASKYGRSEIVKKL-LELGADISARDLTGLTAEASARIFGRQ 180
Score = 29.3 bits (67), Expect = 0.12
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 12 DND-VTPVYLAAQEGHLEVLKFLV 34
D +T A G EV+K
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFT 187
>2rfa_A Transient receptor potential cation channel subfa member 6;
TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 39.5 bits (93), Expect = 3e-05
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+P+ LAA+E ++ L L+ G ++ R G +H AA L
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNL 50
Score = 37.6 bits (88), Expect = 2e-04
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
P+ AA G E+++ L +E G + + G +H
Sbjct: 123 HPLSFAACVGSEEIVRLL-IEHGADIRAQDSLGNTVLHILILQPN 166
Score = 36.0 bits (84), Expect = 7e-04
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRA-----KDGMAPIHAAAQMGCL 61
+ + T +++AA +LE L +EA L +G +H A +
Sbjct: 31 HQRGAMGETALHIAALYDNLEAAMVL-MEAAPELVFEPMTSELYEGQTALHIAVINQNV 88
Score = 35.7 bits (83), Expect = 0.001
Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 12/68 (17%)
Query: 6 SANSQMDNDVTPVYLAAQEGHLEVLKFLV------------LEAGGSLYVRAKDGMAPIH 53
S++ T +++A ++ +++ L+ + G P+
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126
Query: 54 AAAQMGCL 61
AA +G
Sbjct: 127 FAACVGSE 134
Score = 34.5 bits (80), Expect = 0.002
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 9/63 (14%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEV----LKFLVL-----EAGGSLYVRAKDGMAPIHAAAQM 58
+Q T +++ + + L+ V G+ P A
Sbjct: 148 RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE 207
Query: 59 GCL 61
G +
Sbjct: 208 GNI 210
Score = 29.1 bits (66), Expect = 0.15
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 4 EMSANSQMDND-VTPVYLAAQEGHLEVLKFLV 34
S +N +TP LA EG++ + + L+
Sbjct: 186 LKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati midwest center F or
structural genomics, MCSG; 1.77A {Leptotrichia
buccalis}
Length = 186
Score = 38.9 bits (91), Expect = 5e-05
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
+ E ++ FL + G + R K+G Q G
Sbjct: 44 DVLRNNNDEARYKISMFL-INKGADIKSRTKEGTTLFFPLFQGGGND 89
Score = 37.3 bits (87), Expect = 2e-04
Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 8 NSQMDNDVTPVYLAAQEGHLE------VLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
+ V+ ++ + K + ++G L ++ K G+ + +
Sbjct: 108 TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167
Query: 62 SCLKWML 68
LK M
Sbjct: 168 IALKMME 174
Score = 36.2 bits (84), Expect = 4e-04
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 7/64 (10%)
Query: 8 NSQMDNDVTPVYLAAQEGH------LEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
S+ T + Q G E+ K LE G + K + +
Sbjct: 69 KSRTKEGTTLFFPLFQGGGNDITGTTELCKIF-LEKGADITALYKPYKIVVFKNIFNYFV 127
Query: 62 SCLK 65
+
Sbjct: 128 DENE 131
Score = 31.2 bits (71), Expect = 0.026
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 2/49 (4%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCL 61
++ V AA G E L E G ++ +
Sbjct: 5 SEYRTVSAAAMLGTYEDFLEL-FEKGYEDKES-VLKSNILYDVLRNNND 51
Score = 29.3 bits (66), Expect = 0.15
Identities = 3/31 (9%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG 38
+ +T + + LK + +
Sbjct: 148 LIKDKWGLTALEFVKRCQKPIALKMM-EDYI 177
Score = 24.2 bits (53), Expect = 8.0
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 45 AKDGMAPIHAAAQMGCLSCLKWML 68
A + AAA +G +
Sbjct: 3 AMSEYRTVSAAAMLGTYEDFLELF 26
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 37.7 bits (87), Expect = 2e-04
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSC 63
+++ + T ++ AA + LK L L+ + + G + A + C
Sbjct: 220 DAKAADGNTALHYAALYNQPDCLKLL-LKGRALVGTVNEAGETALDIARKKHHKEC 274
Score = 29.6 bits (66), Expect = 0.14
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 20 LAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEACNI 74
A + L ++ F++ GG L +A DG +H AA CLK +L +
Sbjct: 199 KVANQASLPLVDFIIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 37.1 bits (85), Expect = 3e-04
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 4 EMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSC 63
+++ + ++ TP+ A L +FL L+ G ++ G P+H A +G
Sbjct: 225 DVNWVNGGQDNATPLIQATAANSLLACEFL-LQNGANVNQADSAGRGPLHHATILGHTGL 283
Query: 64 LKWMLYEACNI 74
L ++
Sbjct: 284 ACLFLKRGADL 294
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 34.0 bits (78), Expect = 0.003
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 15/75 (20%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAK--------------DGMAPIH 53
T +++A + ++ L +E G ++ +A+ G P+
Sbjct: 87 RDVYYRGQTALHIAIERRCKHYVELL-VEKGADVHAQARGRFFQPKDEGGYFYFGELPLS 145
Query: 54 AAAQMGCLSCLKWML 68
AA + ++
Sbjct: 146 LAACTNQPHIVHYLT 160
Score = 31.7 bits (72), Expect = 0.020
Identities = 6/32 (18%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 4 EMSANSQMDND-VTPVYLAAQEGHLEVLKFLV 34
+ + + ++ND ++P+ +AA+ G + + + ++
Sbjct: 214 DTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245
Score = 27.4 bits (61), Expect = 0.80
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 15/69 (21%)
Query: 8 NSQMDNDVTPVYLAAQEGH--LEVLKF------LVLEAGGSLY-------VRAKDGMAPI 52
Q T ++ E KF L+L L+ + DG++P+
Sbjct: 170 RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL 229
Query: 53 HAAAQMGCL 61
AA+ G +
Sbjct: 230 MMAAKTGKI 238
Score = 24.7 bits (54), Expect = 6.7
Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 12/80 (15%)
Query: 14 DVTPVYLAA----QEGHLEVLKFLVLEAGGSL----YVRAKDGMAPIHAAA---QMGCLS 62
+ ++ +G +L FL L L + G + A G
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFL-LTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND 63
Query: 63 CLKWMLYEACNIFKLTACII 82
+ +L A + I
Sbjct: 64 TIPILLDIAEKTGNMREFIN 83
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 32.9 bits (75), Expect = 0.009
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
+++ + T ++ AA + LK L L+ + + G + A + C +
Sbjct: 201 DAKAADGNTALHYAALYNQPDCLKLL-LKGRALVGTVNEAGETALDIARKKHHKECEE 257
Score = 29.1 bits (65), Expect = 0.23
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 16 TPVYLA---AQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEAC 72
++LA A + L ++ F++ GG L +A DG +H AA CLK +L
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 231
Query: 73 NI 74
+
Sbjct: 232 LV 233
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 31.1 bits (70), Expect = 0.036
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 12 DNDVTPVYLAAQEGHLEVLKF--LVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLY 69
+ D T ++LA + L +++ G+L + G +H CLK +L
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226
Query: 70 EACNI 74
+I
Sbjct: 227 GKASI 231
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like
family; putative rossmann-like dehydrogenase, structural
genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Length = 232
Score = 25.4 bits (55), Expect = 3.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
V A E ++ LV E GGS+ A D A + AA
Sbjct: 103 RWVASALDELGETIVGLLVGELGGSIVEIADDKRAQLAAAL 143
>3c6f_A YETF protein; uncharacterized protein, predicted membrane
protein, protein structure initiative, PSI-2; 2.50A
{Bacillus subtilis}
Length = 153
Score = 24.0 bits (52), Expect = 8.9
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 26 HLEVLKFLVLEAGGSLYVRAKDGMAPIH 53
++ +++ ++E G + V K
Sbjct: 51 SIQEVEYAIMETNGMVSVLPKSDFDKPT 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.138 0.431
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,546,155
Number of extensions: 77629
Number of successful extensions: 708
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 304
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.1 bits)