RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14144
(100 letters)
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 50.7 bits (120), Expect = 2e-09
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N TP+++AA+ GH EV K+L L+ + +AKD P+H AA++G + +K +
Sbjct: 27 NVSNVKVETPLHMAARAGHTEVAKYL-LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 85
Query: 68 LYEACNIF 75
L N
Sbjct: 86 LENNANPN 93
Score = 50.4 bits (119), Expect = 3e-09
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEACNI 74
TP+++A+ GHL ++K L L+ G S V P+H AA+ G K++L +
Sbjct: 2 TPLHVASFMGHLPIVKNL-LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59
Score = 47.7 bits (112), Expect = 2e-08
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
+ ++ N++ +P++ AAQ+GH +++ L L+ G S + DG P+ A ++G
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL-LKNGASPNEVSSDGTTPLAIAKRLGY 375
Query: 61 LSCLKW 66
+S
Sbjct: 376 ISVTDV 381
Score = 41.1 bits (95), Expect = 4e-06
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
+ E S TP+++AA+ G + V + L LE K+G+ P+H A
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELL-LERDAHPNAAGKNGLTPLHVAVHHNN 177
Query: 61 LSCLKWMLYEACNI 74
L +K +L +
Sbjct: 178 LDIVKLLLPRGGSP 191
Score = 29.9 bits (66), Expect = 0.036
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
+ Y SAN++ VTP++LAAQEGH E++ L+ + + K G+ P+H AQ G
Sbjct: 218 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL-SKQANGNLGNKSGLTPLHLVAQEGH 276
Query: 61 LSCLKWMLYEACNI 74
+ ++ +
Sbjct: 277 VPVADVLIKHGVMV 290
Score = 29.2 bits (64), Expect = 0.074
Identities = 15/65 (23%), Positives = 27/65 (41%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N++ +D TP++ AA+ GH ++K L+ AA + + L +
Sbjct: 60 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119
Query: 68 LYEAC 72
EA
Sbjct: 120 EKEAS 124
Score = 28.8 bits (63), Expect = 0.091
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFL--VLEAGGSLYVRAKDGM 49
N + TP+ +A + G++ V L V + + V K M
Sbjct: 357 NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRM 400
Score = 28.0 bits (61), Expect = 0.17
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
+S N TP+++AA++ +EV + L L+ GGS + G+ P+H AAQ G + +
Sbjct: 192 HSPAWNGYTPLHIAAKQNQVEVARSL-LQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 250
Query: 68 LYEACNI 74
L + N
Sbjct: 251 LSKQANG 257
Score = 27.6 bits (60), Expect = 0.24
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
++ TP+++A+ G+++++KFL+ + K G +P+H AAQ G + +
Sbjct: 291 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLL 349
Query: 68 LYEACNI 74
L +
Sbjct: 350 LKNGASP 356
Score = 26.1 bits (56), Expect = 0.84
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 49 MAPIHAAAQMGCLSCLKWMLYEACNI 74
+ P+H A+ MG L +K +L +
Sbjct: 1 LTPLHVASFMGHLPIVKNLLQRGASP 26
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 48.0 bits (113), Expect = 2e-08
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 7 ANSQMDNDVTPVYLAAQEGHLEVLKFL--VLEAGGSLYVRAKDGMAPIHAAAQMGCLSCL 64
A+ + ++AA G L L +L + + V + AA+ G L L
Sbjct: 83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL 142
Query: 65 KWMLYEACN 73
+ A
Sbjct: 143 NRLCELAPT 151
Score = 41.8 bits (97), Expect = 3e-06
Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGCLSCLK 65
+ LAA+ GHL VL L E + + AA+ G L L
Sbjct: 120 KVIQAENYQAFRLAAENGHLHVLNRL-CELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 178
Query: 66 WMLYEACNI 74
+ A
Sbjct: 179 RLCELAPTE 187
Score = 40.6 bits (94), Expect = 6e-06
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 6 SANSQMDNDVTPVYLAAQEGHLEVLKFLV----LEAGGSLYVRAKDGMAPIHAAAQMGCL 61
S Q + + E L+ ++FL+ ++A D + A ++G
Sbjct: 271 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 330
Query: 62 SCLKWML 68
+L
Sbjct: 331 GACALLL 337
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 46.6 bits (109), Expect = 6e-08
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAA 56
N+Q N T + +AA+ G++ ++ L L+ G ++ K G+ P+ A
Sbjct: 253 NAQDSNGDTCLNIAARLGNISIVDAL-LDYGADPFIANKSGLRPVDFGA 300
Score = 38.5 bits (88), Expect = 4e-05
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 8 NSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW 66
N +D TP++ +LE++K L ++ G + G + + A +
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLELVKHL-VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGT 158
Query: 67 M 67
Sbjct: 159 F 159
Score = 37.0 bits (84), Expect = 1e-04
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGCLSCLK 65
S + + E +L+ L L+ + + A+D G ++ AA++G +S +
Sbjct: 217 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 276
Query: 66 WML 68
+L
Sbjct: 277 ALL 279
Score = 29.2 bits (64), Expect = 0.073
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 46 KDGMAPIHAAAQMGCLSCLKWMLYEACNI 74
+ G P+H + L +K ++ N
Sbjct: 105 EHGNTPLHWLTSIANLELVKHLVKHGSNR 133
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 43.4 bits (101), Expect = 6e-07
Identities = 11/61 (18%), Positives = 27/61 (44%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N + + TP+ LA ++ HL +++ L+ + + DG + A ++ + +
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272
Query: 68 L 68
Sbjct: 273 C 273
Score = 40.3 bits (93), Expect = 8e-06
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSL-YVRAKDGMAPIHAAAQMGCLSCLKWMLYEA 71
D + A Q +++++ L LE G ++ + + G P+H A QM ++ +L
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQL-LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62
Query: 72 CNIFKLTACIILSHY 86
+
Sbjct: 63 ADPVLRKKNGATPFL 77
Score = 33.4 bits (75), Expect = 0.002
Identities = 15/67 (22%), Positives = 27/67 (40%)
Query: 3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
+ T + AA++GH+EVLK L+ E G + G + A S
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196
Query: 63 CLKWMLY 69
++ + +
Sbjct: 197 DVEAITH 203
Score = 26.1 bits (56), Expect = 0.71
Identities = 8/62 (12%), Positives = 21/62 (33%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEA 71
+ TP++ A Q ++++ L+ + + + AA ++ A
Sbjct: 37 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 72 CN 73
Sbjct: 97 DV 98
Score = 25.7 bits (55), Expect = 1.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 46 KDGMAPIHAAAQMGCLSCLKWMLYEA 71
K G + AA+ G + LK +L E
Sbjct: 146 KGGATALMDAAEKGHVEVLKILLDEM 171
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 43.2 bits (100), Expect = 9e-07
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 10 QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLK 65
Q ++ TP+ LAAQEG +EV+ +L ++ G S+ A + +
Sbjct: 217 QDEDGKTPIMLAAQEGRIEVVMYL-IQQGASVEAVDATDHTARQLAQANNHHNIVD 271
Score = 32.8 bits (73), Expect = 0.004
Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 8/99 (8%)
Query: 4 EMSANSQMDND-VTPVYLAAQEGHLEVLKFLV-------LEAGGSLYVRAKDGMAPIHAA 55
S N T ++ A E + L+ + AG + D P+ A
Sbjct: 22 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA 81
Query: 56 AQMGCLSCLKWMLYEACNIFKLTACIILSHYNIIRRRRV 94
+ +++ + + + R
Sbjct: 82 VLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 120
Score = 32.8 bits (73), Expect = 0.004
Identities = 4/60 (6%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEACNIF 75
+P+ L + + + ++ + + +H A + ++
Sbjct: 2 SPIKLHTEAAGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60
Score = 31.6 bits (70), Expect = 0.010
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
+S+ T ++ AAQ ++ ++K+LV E G + + +DG PI AAQ G
Sbjct: 174 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 233
Query: 61 LSCLKWMLYEACNI 74
+ + +++ + ++
Sbjct: 234 IEVVMYLIQQGASV 247
Score = 28.2 bits (61), Expect = 0.17
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFL 33
+ D T LA H ++
Sbjct: 248 EAVDATDHTARQLAQANNHHNIVDIF 273
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory
subunit 10, gankyrin {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 229
Score = 41.7 bits (96), Expect = 2e-06
Identities = 12/84 (14%), Positives = 25/84 (29%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEACNIF 75
P++ A E ++ L+ L + +DG P+H + ++L + N+
Sbjct: 2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61
Query: 76 KLTACIILSHYNIIRRRRVVFKIW 99
V
Sbjct: 62 LDDYPDDSGWTPFHIACSVGNLEV 85
Score = 31.3 bits (69), Expect = 0.011
Identities = 13/64 (20%), Positives = 20/64 (31%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
+ + N Q TP++ A EGH + LV + G + G A
Sbjct: 159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV 218
Query: 61 LSCL 64
Sbjct: 219 KKFF 222
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 41.6 bits (96), Expect = 3e-06
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQ 57
+ N + + TP++ AA G E + L +E + K G A +
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL-VENLCDMEAVNKVGQTAFDVADE 274
Score = 37.0 bits (84), Expect = 1e-04
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Query: 13 NDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEAC 72
+D A G E + L LE G + DG+ +H A + +K+++
Sbjct: 39 DDGAVFLAACSSGDTEEVLRL-LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 73 NIFKLTACIILSHYNIIRRRRVVFKIW 99
NI + + + + +
Sbjct: 98 NINQPDNEGWIPLHAAASCGYLDIAEY 124
Score = 33.2 bits (74), Expect = 0.002
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
+ ++ + T +++AA +G+ EVLK L+ +A + ++ DG P+HAAA G
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI-QARYDVNIKDYDGWTPLHAAAHWGK 244
Query: 61 LSCLKWMLYEACNI 74
+ ++ C++
Sbjct: 245 EEACRILVENLCDM 258
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 40.8 bits (94), Expect = 5e-06
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKD--GMAPIHAAAQMGCLSCLKWMLY 69
++ T ++LA H L FL+ + G Y+ ++ G +H AA +G S ++ +
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 70 EACNIFKLTACIILSHY 86
+ + +
Sbjct: 67 AGAGVLVAERGGHTALH 83
Score = 36.6 bits (83), Expect = 1e-04
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 3 YEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLS 62
+ TP++LA + VL+ L L+AG R G P+ +A
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELL-LKAGADPTARMYGGRTPLGSALLRPNPI 239
Query: 63 CLKWML 68
+ +
Sbjct: 240 LARLLR 245
Score = 28.9 bits (63), Expect = 0.085
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG 38
++M TP+ A + + + L G
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLL-RAHG 248
Score = 23.5 bits (49), Expect = 6.1
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
+ Q D T ++LAA G ++ + AG + V + G +H A ++ +C +
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEK-LYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97
Query: 68 LYEACNIFKLTACIILSHYNIIRRR 92
L + + + L+
Sbjct: 98 LQPRPSHPRDASDTYLTQSQDCTPD 122
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory
subunit 10, gankyrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 223
Score = 38.0 bits (87), Expect = 5e-05
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 18 VYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEACNIF 75
V A G LE LK +L +D +H A G ++++L +
Sbjct: 7 VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64
Score = 33.8 bits (76), Expect = 0.002
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWM 67
N+ N TP++ AA + E+ L LE G + + +H AA G L + +
Sbjct: 97 NAVNQNGCTPLHYAASKNRHEIAVML-LEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 155
Query: 68 LYEACNIFK 76
LY +
Sbjct: 156 LYYKASTNI 164
Score = 33.4 bits (75), Expect = 0.002
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
+ Y+ S N Q TP++LA E +E K L + G S+Y+ K+ P+ A G
Sbjct: 156 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLL-VSQGASIYIENKEEKTPLQVAKG-GL 213
Query: 61 LSCLKWML 68
LK M+
Sbjct: 214 GLILKRMV 221
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 37.9 bits (86), Expect = 5e-05
Identities = 11/65 (16%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
+ + + N+QM + + ++ A+ G L +++ L + +G ++ P+ A
Sbjct: 164 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTL-VRSGADSSLKNCHNDTPLMVARSRRV 222
Query: 61 LSCLK 65
+ L+
Sbjct: 223 IDILR 227
Score = 36.0 bits (81), Expect = 3e-04
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 12 DNDVTPVYLAAQEGHLEVLKFLV---LEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWML 68
++ TP+++A +G+L + LV + G L + P+H A S ++ ++
Sbjct: 1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60
Query: 69 YEACNIFKLTACIILSHYNIIRRRRVVFKIW 99
+ L + + R
Sbjct: 61 TAGASPMALDRHGQTAAHLACEHRSPTCLRA 91
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 34.5 bits (77), Expect = 8e-04
Identities = 8/87 (9%), Positives = 22/87 (25%), Gaps = 3/87 (3%)
Query: 16 TPVYLAAQEGHLEVLKFLV---LEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEAC 72
+ ++LA + ++ L + P+H A + +L C
Sbjct: 4 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 63
Query: 73 NIFKLTACIILSHYNIIRRRRVVFKIW 99
+ + + +
Sbjct: 64 DPELRDFRGNTPLHLACEQGCLASVGV 90
Score = 26.8 bits (57), Expect = 0.44
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 10 QMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWML 68
+ N T ++LA + +++ +L+ G + G +P + +
Sbjct: 141 EPCNGRTALHLAVDLQNPDLVSL-LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG 198
Score = 26.8 bits (57), Expect = 0.51
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV 34
N +P L + + L
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLG 198
Score = 23.3 bits (48), Expect = 7.6
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 47 DGMAPIHAAAQMGCLSCLKWML 68
DG + +H A + ++
Sbjct: 1 DGDSFLHLAIIHEEKALTMEVI 22
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 32.1 bits (71), Expect = 0.006
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGC 60
+ + + ++Q D D TP++LAA+EG E K L L+ + + P A++
Sbjct: 143 LMHHANRDAQDDKDETPLFLAAREGSYEASKAL-LDNFANREITDHMDRLPRDVASERLH 201
Query: 61 LSCLK 65
++
Sbjct: 202 HDIVR 206
Score = 28.2 bits (61), Expect = 0.13
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFL 33
D P +A++ H ++++ L
Sbjct: 183 EITDHMDRLPRDVASERLHHDIVRLL 208
Score = 25.1 bits (53), Expect = 1.4
Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 1/94 (1%)
Query: 8 NSQMDND-VTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKW 66
N+ MD T ++LAA+ + K L+ + A A
Sbjct: 16 NATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQIL 75
Query: 67 MLYEACNIFKLTACIILSHYNIIRRRRVVFKIWI 100
+ A N+ R +
Sbjct: 76 LRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 109
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 29.2 bits (64), Expect = 0.053
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLVLEAG 38
++ TP+ +A + H + L +A
Sbjct: 108 EIANESGETPLDIAKRLKHEHCEELL-TQAL 137
Score = 23.8 bits (50), Expect = 4.0
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 46 KDGMAPIHAAAQMGCLSCLKWML 68
+ G P+ A ++ C + +
Sbjct: 112 ESGETPLDIAKRLKHEHCEELLT 134
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 28.2 bits (61), Expect = 0.14
Identities = 10/84 (11%), Positives = 23/84 (27%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEACNIF 75
+ AA G ++ ++ L+ + G + L+ + A
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63
Query: 76 KLTACIILSHYNIIRRRRVVFKIW 99
+ T+ H K+
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVL 87
Score = 27.9 bits (60), Expect = 0.16
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 8 NSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ + +TP+ LA Q G +++ L
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 24.4 bits (51), Expect = 2.9
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 36 EAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWML 68
A L+ R G+ P+ A Q G + +
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 27.5 bits (59), Expect = 0.20
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFLV 34
+ + T LA G EV+ +
Sbjct: 120 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153
Score = 27.2 bits (58), Expect = 0.31
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEACNIF 75
+ AA G LE L L L+ ++ + G + + +L A
Sbjct: 3 NELASAAARGDLEQLTSL-LQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 26.8 bits (57), Expect = 0.31
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFL 33
+ + PV LA + GH +V ++L
Sbjct: 89 HRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 26.7 bits (57), Expect = 0.41
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 1 MTYEMSANSQMDNDVTPVYLAAQEGHLEVLKFL 33
+ Y ++Q T ++ G+ ++ + L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 25.2 bits (53), Expect = 1.3
Identities = 8/84 (9%), Positives = 20/84 (23%), Gaps = 1/84 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEACNIF 75
+ AA+ G + ++ L + G AA + +
Sbjct: 4 KKLLEAARAGQDDEVRIL-MANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 76 KLTACIILSHYNIIRRRRVVFKIW 99
+ H + ++
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVL 86
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 24.2 bits (51), Expect = 3.0
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 16 TPVYLAAQEGHLEVLKFLV 34
+EG+ + +FL
Sbjct: 105 ADKCEEMEEGYTQCSQFLY 123
Score = 22.7 bits (47), Expect = 9.1
Identities = 8/60 (13%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEACNIF 75
+ ++ EG ++++ + + + +G+ +H A G +K+++ N+
Sbjct: 3 ALLLDSSLEGEFDLVQRI-IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 61
>d2fsua1 c.67.2.1 (A:12-194) Phosphonate metabolism protein PhnH
{Escherichia coli [TaxId: 562]}
Length = 183
Score = 23.6 bits (51), Expect = 4.5
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 11 MDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGM-APIHAAAQMGCLSCLKW 66
DND TPV+L+ + V + L L + + A A L+ L
Sbjct: 45 ADND-TPVWLSTPLNNDIVNQSLRFHTNAPLVSQPEQATFAVTDEAISSEQLNALST 100
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 118
Score = 23.7 bits (49), Expect = 4.8
Identities = 11/84 (13%), Positives = 19/84 (22%)
Query: 16 TPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPIHAAAQMGCLSCLKWMLYEACNIF 75
A + G L+ +K V + +AA +L A
Sbjct: 4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63
Query: 76 KLTACIILSHYNIIRRRRVVFKIW 99
I + K+
Sbjct: 64 PDKHHITPLLSAVYEGHVSCVKLL 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.138 0.431
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 370,553
Number of extensions: 14220
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 71
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.0 bits)