BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14146
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 77/110 (70%)
Query: 19 SSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADA 78
S NQF QP W+ V+W + Y +VV + GN++V+WI+LAHKRMRTVTNYFLVNL+ A+A
Sbjct: 20 SEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEA 79
Query: 79 MVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
++ N NF Y + ++W +G FYCK F + ++ AS++++ A++ D
Sbjct: 80 SMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFD 129
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 27 PWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVT 86
P +V LY + V GN +V++++L H +M+T TN ++ NL+LAD +V L +
Sbjct: 121 PLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLP 179
Query: 87 FNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
F +L WPFG CK + ++ S FTL A+SVD
Sbjct: 180 FQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVD 221
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 32 VMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVY 91
V+ T++Y+ + VV GN +V+++++ + +M+T TN ++ NL+LADA+V+T + VY
Sbjct: 23 VIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVY 82
Query: 92 MLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
+++S WPFG CK+ + ++ S+FTL +SVD
Sbjct: 83 LMNS-WPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVD 118
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 36 SLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSS 95
+LY+ + VV GN +V+++++ + +M+T TN ++ NL+LADA+ +T + F V L
Sbjct: 22 ALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSVNYLMG 80
Query: 96 DWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
WPFG CK+ + ++ S+FTL +SVD
Sbjct: 81 TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVD 113
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 48 GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
GN++VI + +R++TVTNYF+ +L+ AD ++ V F ++L+ W FG F+C+
Sbjct: 199 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFW 258
Query: 108 QFVAVLSICASVFTLMAISVD 128
+ VL + AS+ TL I+VD
Sbjct: 259 TSIDVLCVTASIETLCVIAVD 279
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 52/84 (61%)
Query: 48 GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
GN++VI + +R++TVTNYF+ +L+ AD ++ V F ++L+ W FG F+C+
Sbjct: 22 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFW 81
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
+ VL + AS+ TL I+VD +
Sbjct: 82 TSIDVLCVTASIETLCVIAVDRYF 105
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 35 TSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLS 94
T+LY+ + V GN++V++ ++ + +++T TN ++ NL+LADA+ +T + F L
Sbjct: 18 TALYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADAL-ATSTLPFQSAKYLM 76
Query: 95 SDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
WPFG CK + ++ S+FTL +SVD
Sbjct: 77 ETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVD 110
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 52/84 (61%)
Query: 48 GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
GN++VI + +R++TVTNYF+ +L+ AD ++ V F ++L W FG F+C+
Sbjct: 58 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 117
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
+ VL + AS++TL I+VD +
Sbjct: 118 TSIDVLCVTASIWTLCVIAVDRYF 141
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 48 GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
GN++VI + +R++TVTNYF+ +L+ AD ++ V F ++L W FG F+C+
Sbjct: 51 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 110
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
+ VL + AS+ TL I+VD +
Sbjct: 111 TSIDVLCVTASIETLCVIAVDRYF 134
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 48 GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
GN++VI + +R++TVTNYF+ +L+ AD ++ V F ++L W FG F+C+
Sbjct: 57 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 116
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
+ VL + AS+ TL I+VD +
Sbjct: 117 TSIDVLCVTASIETLCVIAVDRYF 140
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 48 GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
GN++VI + +R++TVTNYF+ +L+ AD ++ V F ++L W FG F+C+
Sbjct: 58 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 117
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
+ VL + AS+ TL I+VD +
Sbjct: 118 TSIDVLCVTASIETLCVIAVDRYF 141
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 48 GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
GN++VI + +R++TVTNYF+ +L+ AD ++ V F ++L W FG F+C+
Sbjct: 27 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 86
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
+ VL + AS+ TL I+VD +
Sbjct: 87 TSIDVLCVTASIETLCVIAVDRYF 110
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 48 GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
GN++VI + +R++TVTNYF+ +L+ AD ++ V F ++L W FG F+C+
Sbjct: 50 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 109
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
+ VL + AS+ TL I+VD +
Sbjct: 110 TSIDVLCVTASIETLCVIAVDRYF 133
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%)
Query: 48 GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
GN++VI + +R++TVTNYF+ +L+ AD ++ V F +L W FG F+C+
Sbjct: 26 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFW 85
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
+ VL + AS+ TL I+VD +
Sbjct: 86 TSIDVLCVTASIETLCVIAVDRYF 109
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 56/92 (60%)
Query: 37 LYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSD 96
L A +V++ GN++VI + + +R++T+TN F+ +L+ AD +V L V F ++
Sbjct: 17 LMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGT 76
Query: 97 WPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
W +G F C++ + VL + AS+ TL I++D
Sbjct: 77 WLWGSFLCELWTSLDVLCVTASIETLCVIAID 108
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%)
Query: 37 LYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSD 96
L A +V++ GN++VI + + +R++T+TN F+ +L+ AD +V L V F ++
Sbjct: 17 LMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGT 76
Query: 97 WPFGRFYCKVTQFVAVLSICASVFTLMAISVDS 129
W +G F C++ + VL + AS+ TL I++D
Sbjct: 77 WLWGSFLCELWTSLDVLCVTASIETLCVIAIDR 109
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 53/89 (59%)
Query: 41 MVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFG 100
+ +V G NL+V++ V + +++ TV N ++V+LS+AD +V + + N +Y+L S W G
Sbjct: 18 ICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLG 77
Query: 101 RFYCKVTQFVAVLSICASVFTLMAISVDS 129
R C + ++ AS+F++ + +D
Sbjct: 78 RPLCLFWLSMDYVASTASIFSVFILCIDR 106
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%)
Query: 29 WKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFN 88
W+ V L + +V GN++VI +K+++TV NYFL++L+ AD ++ +++
Sbjct: 10 WQVVFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLF 69
Query: 89 FVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDSTY 131
Y++ + W G C + + ++ ASV L+ IS D +
Sbjct: 70 TTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYF 112
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 38 YAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVT-FNFVYMLSSD 96
Y +++ GN +V VL + ++T TNY +V+L++AD +V+TL + ++ +
Sbjct: 45 YCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGV 104
Query: 97 WPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
W F R C V + V+ AS++ L AIS+D
Sbjct: 105 WNFSRICCDVFVTLDVMMCTASIWNLCAISID 136
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 8/102 (7%)
Query: 32 VMWTSLYA----PMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTF 87
+M +S+Y + V+A GN++V W V + ++ VTNYF+V+L+ AD V L + F
Sbjct: 28 IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF 87
Query: 88 NFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVFTLMAISVD 128
+S+ + C + FV VL+ +S+F+L+AI++D
Sbjct: 88 AIT--ISTGFCAACHGCLFIACFVLVLTQ-SSIFSLLAIAID 126
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 60/102 (58%), Gaps = 8/102 (7%)
Query: 32 VMWTSLYA----PMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTF 87
+M +S+Y + V+A GN++V W V + ++ VTNYF+V+L+ AD +V L + F
Sbjct: 3 IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPF 62
Query: 88 NFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVFTLMAISVD 128
+S+ + C + FV VL+ +S+F+L+AI++D
Sbjct: 63 AIT--ISTGFCAACHGCLFIACFVLVLAQ-SSIFSLLAIAID 101
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 9/117 (7%)
Query: 18 ESSSNQFEQP-WWKQVMWTSLYA----PMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVN 72
+ + QP +M +S+Y + V+A GN++V W V + ++ VTNYF+V+
Sbjct: 3 KDDDDAMGQPVGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVS 62
Query: 73 LSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVFTLMAISVD 128
L+ AD V L + F +S+ + C + FV VL+ +S+F+L+AI++D
Sbjct: 63 LAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQ-SSIFSLLAIAID 116
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 15 DTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLS 74
D+++ + E + ++ ++Y+ + + GN +VI ++ K++R++T+ + ++LS
Sbjct: 32 DSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLS 91
Query: 75 LADAMVSTLNVTFNF-VYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
+AD + +T F ++W FG F CK + +++ +SV+ L IS+D
Sbjct: 92 VADLLFV---ITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLD 143
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 15 DTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLS 74
D+++ + E + ++ ++Y+ + + GN +VI ++ K++R++T+ + ++LS
Sbjct: 32 DSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLS 91
Query: 75 LADAMVSTLNVTFNF-VYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
+AD + +T F ++W FG F CK + +++ +SV+ L IS+D
Sbjct: 92 VADLLFV---ITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLD 143
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 15 DTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLS 74
D+++ + E + ++ ++Y+ + + GN +VI ++ K++R++T+ + ++LS
Sbjct: 32 DSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLS 91
Query: 75 LADAMVSTLNVTFNF-VYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
+AD + +T F ++W FG F CK + +++ +SV+ L IS+D
Sbjct: 92 VADLLFV---ITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLD 143
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 8/102 (7%)
Query: 32 VMWTSLYA----PMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTF 87
+M +S+Y + V+A GN++V W V + ++ VTNYF+V+L+ AD V L + F
Sbjct: 3 IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF 62
Query: 88 NFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVFTLMAISVD 128
+S+ + C + FV VL+ +S+F+L+AI++D
Sbjct: 63 AIT--ISTGFCAACHGCLFIACFVLVLTQ-SSIFSLLAIAID 101
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 59/102 (57%), Gaps = 8/102 (7%)
Query: 32 VMWTSLYA----PMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTF 87
+M +S+Y + V+A GN++V W V + ++ VTNYF+V+ + AD +V L + F
Sbjct: 3 IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPF 62
Query: 88 NFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVFTLMAISVD 128
+S+ + C + FV VL+ +S+F+L+AI++D
Sbjct: 63 AIA--ISTGFCAACHGCLFIACFVLVLTA-SSIFSLLAIAID 101
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 48 GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
GN++V+ + ++ ++TV NYFL +L+ AD ++ ++ +Y + WP G C +
Sbjct: 40 GNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLW 99
Query: 108 QFVAVLSICASVFTLMAISVD 128
+ + ASV L+ IS D
Sbjct: 100 LALDYVVSNASVMNLLIISFD 120
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 18 ESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLAD 77
E+ +PW ++ ++ ++++ N + +++ + HK++RT NY L+NL++AD
Sbjct: 26 EAPQYYLAEPWQFSMLAAYMFL-LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 84
Query: 78 AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
+ T L + FG C + F A L ++++L+ ++++
Sbjct: 85 LFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIE 135
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 18 ESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLAD 77
E+ +PW ++ ++ ++++ N + +++ + HK++RT NY L+NL++AD
Sbjct: 25 EAPQYYLAEPWQFSMLAAYMFL-LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 83
Query: 78 AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
+ T L + FG C + F A L ++++L+ ++++
Sbjct: 84 LFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIE 134
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 18 ESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLAD 77
E+ +PW ++ ++ ++++ N + +++ + HK++RT NY L+NL++AD
Sbjct: 26 EAPQYYLAEPWQFSMLAAYMFL-LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 84
Query: 78 AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
+ T L + FG C + F A L ++++L+ ++++
Sbjct: 85 LFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIE 135
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 18 ESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLAD 77
E+ +PW ++ ++ ++++ N + +++ + HK++RT NY L+NL++AD
Sbjct: 26 EAPQYYLAEPWQFSMLAAYMFL-LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 84
Query: 78 AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
+ T L + FG C + F A L ++++L+ ++++
Sbjct: 85 LFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIE 135
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 18 ESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLAD 77
E+ +PW ++ ++ ++++ N + +++ + HK++RT NY L+NL++AD
Sbjct: 25 EAPQYYLAEPWQFSMLAAYMFL-LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 83
Query: 78 AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
+ T L + FG C + F A L ++++L+ ++++
Sbjct: 84 LFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIE 134
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 18 ESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLAD 77
E+ +PW ++ ++ ++++ N + +++ + HK++RT NY L+NL++AD
Sbjct: 26 EAPQYYLAEPWQFSMLAAYMFL-LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 84
Query: 78 AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
+ T L + FG C + F A L ++++L+ ++++
Sbjct: 85 LFMVFGGFTTTLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIE 135
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 60 KRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSS----DWPFGRFYCKVTQFVAVLSI 115
K ++T N F++NL+ +D S +N F M S W FG CKV F+ +
Sbjct: 63 KSLQTPANMFIINLAFSDFTFSLVN---GFPLMTISCFLKKWIFGFAACKVYGFIGGIFG 119
Query: 116 CASVFTLMAISVD 128
S+ T+ IS+D
Sbjct: 120 FMSIMTMAMISID 132
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 60 KRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSS----DWPFGRFYCKVTQFVAVLSI 115
K ++T N F++NL+ +D S +N F M S W FG CKV F+ +
Sbjct: 62 KSLQTPANMFIINLAFSDFTFSLVN---GFPLMTISCFLKKWIFGFAACKVYGFIGGIFG 118
Query: 116 CASVFTLMAISVD 128
S+ T+ IS+D
Sbjct: 119 FMSIMTMAMISID 131
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 29 WKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAM-VSTLNVTF 87
W + S+Y + VV+ N++ I + + +++ ++++L+ AD + VS L
Sbjct: 18 WLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKI 77
Query: 88 NFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
++ Y SDW FG C+ ++ AS+ + IS+D
Sbjct: 78 SY-YFSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISID 117
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 54 WIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNF---------VYMLSSDWPFGRFYC 104
W VL +R N N S+ + S N+TF F + LS FGR C
Sbjct: 118 WTVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARC 177
Query: 105 KV 106
V
Sbjct: 178 GV 179
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 49 NLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDW---PFGRFYCK 105
N+ V+ + K+ YF+ NL+L+D +++ + T N + ++ + P F +
Sbjct: 81 NIFVLLTIWKTKKFHRPMYYFIGNLALSD-LLAGVAYTANLLLSGATTYKLTPAQWFLRE 139
Query: 106 VTQFVAVLSICASVFTLMAISVD 128
+ FVA + ASVF+L+AI+++
Sbjct: 140 GSMFVA---LSASVFSLLAIAIE 159
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 38 YAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDW 97
YA + +++ GN +V+ ++L + R+VT+ +L+NL+LAD + + + + + W
Sbjct: 18 YALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKV--NGW 75
Query: 98 PFGRFYCKVTQFVAVLSICASVFTLMAISVDS 129
FG F CKV + ++ + + L ISVD
Sbjct: 76 IFGTFLCKVVSLLKEVNFYSGILLLACISVDR 107
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 2 SLYENNLTWIMANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKR 61
SLY N+L +++E + FE P K+ ++ S ++ +LI I A+K
Sbjct: 212 SLYPNSLYIWKRGESIEKAKKLFEVP--KEYIYVSA-GKLLSDTISSSLIFI---SANKD 265
Query: 62 MRTVTNYFL----VNLSLADAMV---STLNVTFN--FVYMLSSDWPFGRFYCKVTQFVAV 112
NY L NL L + +TL +F ++L SDW F K VA+
Sbjct: 266 FYNYDNYILDTKYKNLKLQKINMPSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVAL 325
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 22 NQFEQPWWKQVMWTSLYAPMVVVATG 47
N F+ K++ W+S+ P VV ATG
Sbjct: 72 NVFQXKEPKEIPWSSVGNPYVVEATG 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.132 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,557,241
Number of Sequences: 62578
Number of extensions: 114121
Number of successful extensions: 301
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 43
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)