Query psy14146
Match_columns 133
No_of_seqs 116 out of 1172
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 20:40:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.9 5.2E-23 1.1E-27 149.1 6.8 111 23-133 27-137 (423)
2 PHA03234 DNA packaging protein 99.9 4.9E-21 1.1E-25 139.8 13.1 106 26-133 27-134 (338)
3 PHA02834 chemokine receptor-li 99.8 5.2E-19 1.1E-23 128.4 12.5 102 29-133 26-127 (323)
4 PHA02638 CC chemokine receptor 99.8 2.7E-17 5.8E-22 123.1 14.1 101 30-133 97-197 (417)
5 PHA03087 G protein-coupled che 99.8 8.9E-18 1.9E-22 122.2 10.9 104 28-133 37-140 (335)
6 PHA03235 DNA packaging protein 99.7 4.5E-17 9.9E-22 121.6 13.6 104 28-133 29-134 (409)
7 KOG4220|consensus 99.7 4.9E-20 1.1E-24 134.2 -4.0 104 30-133 29-132 (503)
8 PF00001 7tm_1: 7 transmembran 99.7 5.2E-16 1.1E-20 107.2 8.8 86 48-133 1-86 (257)
9 PF10320 7TM_GPCR_Srsx: Serpen 99.4 8.5E-14 1.8E-18 98.3 4.5 89 43-133 2-90 (257)
10 KOG2087|consensus 99.2 2.3E-11 5.1E-16 87.9 4.8 98 36-133 29-133 (363)
11 PF10328 7TM_GPCR_Srx: Serpent 98.8 5.6E-08 1.2E-12 69.2 9.8 92 41-133 3-96 (274)
12 PF10324 7TM_GPCR_Srw: Serpent 98.3 2.9E-06 6.3E-11 61.5 7.8 92 41-133 6-107 (318)
13 PF11710 Git3: G protein-coupl 98.3 2.2E-05 4.7E-10 53.7 10.9 73 60-132 30-102 (201)
14 PF05296 TAS2R: Mammalian tast 98.0 0.00047 1E-08 50.1 12.8 101 30-130 5-108 (303)
15 PF05462 Dicty_CAR: Slime mold 97.9 0.00046 1E-08 50.1 11.7 96 33-132 8-103 (303)
16 PF10321 7TM_GPCR_Srt: Serpent 97.6 0.0013 2.8E-08 48.0 10.4 99 28-131 29-133 (313)
17 PF10292 7TM_GPCR_Srab: Serpen 97.5 0.0046 1E-07 45.3 11.6 98 35-132 20-124 (324)
18 PF10317 7TM_GPCR_Srd: Serpent 97.1 0.0091 2E-07 43.0 9.7 95 37-132 4-110 (292)
19 PF10323 7TM_GPCR_Srv: Serpent 97.0 0.0083 1.8E-07 43.2 8.5 90 44-133 7-104 (283)
20 PF03402 V1R: Vomeronasal orga 96.7 0.0063 1.4E-07 43.4 5.8 68 61-130 6-74 (265)
21 PF10316 7TM_GPCR_Srbc: Serpen 96.5 0.039 8.4E-07 39.6 9.1 99 35-133 9-110 (273)
22 PF02117 7TM_GPCR_Sra: Serpent 94.6 1.3 2.8E-05 32.7 11.1 98 35-132 24-129 (328)
23 PF02118 Srg: Srg family chemo 94.5 0.54 1.2E-05 33.2 8.8 93 41-133 7-110 (275)
24 PF00002 7tm_2: 7 transmembran 93.0 0.068 1.5E-06 37.2 1.9 89 42-131 11-99 (242)
25 PF10326 7TM_GPCR_Str: Serpent 92.4 0.28 6E-06 35.5 4.5 94 40-133 7-111 (307)
26 PF02101 Ocular_alb: Ocular al 89.1 7.7 0.00017 29.4 9.3 66 67-132 68-144 (405)
27 PF06681 DUF1182: Protein of u 86.9 2.1 4.6E-05 29.6 4.9 35 99-133 112-146 (226)
28 PF02175 7TM_GPCR_Srb: Serpent 81.1 17 0.00036 25.7 10.4 34 100-133 81-114 (236)
29 PF03125 Sre: C. elegans Sre G 79.7 23 0.0005 26.5 10.9 104 29-132 24-151 (365)
30 PF04789 DUF621: Protein of un 77.9 24 0.00053 25.7 7.9 81 50-131 33-117 (305)
31 PF10327 7TM_GPCR_Sri: Serpent 68.9 25 0.00055 25.6 6.2 61 32-92 9-73 (303)
32 PF01102 Glycophorin_A: Glycop 59.8 17 0.00037 22.9 3.4 15 44-58 75-89 (122)
33 PF09882 DUF2109: Predicted me 53.9 42 0.0009 19.4 4.7 46 43-88 5-50 (78)
34 PF10318 7TM_GPCR_Srh: Serpent 44.7 1.1E+02 0.0025 21.8 6.7 98 34-132 6-113 (302)
35 PF02116 STE2: Fungal pheromon 42.8 1.3E+02 0.0029 21.9 8.5 36 30-66 31-66 (284)
36 KOG4193|consensus 41.9 1.9E+02 0.0042 23.6 9.5 73 51-131 339-413 (610)
37 PF11446 DUF2897: Protein of u 35.6 63 0.0014 17.3 2.8 20 39-58 9-28 (55)
38 PF10319 7TM_GPCR_Srj: Serpent 31.9 83 0.0018 23.3 3.7 47 37-83 10-57 (310)
39 KOG4564|consensus 25.6 3.4E+02 0.0074 21.5 12.6 84 36-119 149-244 (473)
40 PF02076 STE3: Pheromone A rec 24.2 2.9E+02 0.0062 20.1 6.2 77 45-126 4-81 (283)
41 TIGR01477 RIFIN variant surfac 23.3 2.1E+02 0.0046 21.7 4.6 28 35-62 311-338 (353)
42 PTZ00046 rifin; Provisional 22.9 2.2E+02 0.0048 21.6 4.6 28 35-62 316-343 (358)
No 1
>KOG4219|consensus
Probab=99.88 E-value=5.2e-23 Score=149.11 Aligned_cols=111 Identities=50% Similarity=0.952 Sum_probs=106.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q psy14146 23 QFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRF 102 (133)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~ 102 (133)
....+.+.+..+..+|..+.+++++||.++++++..+|++|+.+|+++.|||+||+.++++..+....+.+..+|.+|.+
T Consensus 27 ~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f 106 (423)
T KOG4219|consen 27 LFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSF 106 (423)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccc
Confidence 46678888899999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred cchhchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146 103 YCKVTQFVAVLSICASVFTLMAISVDSTYQY 133 (133)
Q Consensus 103 ~C~~~~~~~~~~~~~s~~~l~~isidRy~av 133 (133)
.|++..|+..+...+|+++++++|+|||.||
T Consensus 107 ~C~f~nf~~itav~vSVfTlvAiA~DRy~AI 137 (423)
T KOG4219|consen 107 YCRFVNFFPITAVFVSVFTLVAIAIDRYMAI 137 (423)
T ss_pred eeeeccccchhhhhHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.87 E-value=4.9e-21 Score=139.80 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=90.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q psy14146 26 QPWWKQVMWTSLYAPMVVVATGGNLIVIWIV--LAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFY 103 (133)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~gi~~N~~vl~~~--~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (133)
..+..+.....+|.+++++|++||.++++++ .+++++|+++|+++.|||+||++.++. .|...... ...|++|+..
T Consensus 27 ~~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~~-~~~w~fG~~l 104 (338)
T PHA03234 27 TLKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLC-VFFLTLNR-EALFNFNQAF 104 (338)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH-HHHHHHHH-hCCccCchhH
Confidence 3445667778899999999999999999955 455677899999999999999999764 56555443 4579999999
Q ss_pred chhchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146 104 CKVTQFVAVLSICASVFTLMAISVDSTYQY 133 (133)
Q Consensus 104 C~~~~~~~~~~~~~s~~~l~~isidRy~av 133 (133)
|++.+++......+|++++++||+|||+||
T Consensus 105 Ck~~~~~~~~~~~~Si~~L~~ISiDRY~aI 134 (338)
T PHA03234 105 CQCVLFIYHASCSYSICMLAIIATIRYKTL 134 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHeee
Confidence 999999999999999999999999999986
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.81 E-value=5.2e-19 Score=128.39 Aligned_cols=102 Identities=23% Similarity=0.417 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhch
Q psy14146 29 WKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQ 108 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 108 (133)
..+.+...++.++.++|++||+++++++.++|++ ++.++++.|||++|++. ....|..+... ..+|..|+..|++.+
T Consensus 26 ~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~ 102 (323)
T PHA02834 26 DVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVL 102 (323)
T ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHH
Confidence 3456778899999999999999999998876654 56899999999999986 55788766544 457999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146 109 FVAVLSICASVFTLMAISVDSTYQY 133 (133)
Q Consensus 109 ~~~~~~~~~s~~~l~~isidRy~av 133 (133)
+....+..+|++++++||+|||+||
T Consensus 103 ~~~~~~~~~Si~tL~~IsidRY~aI 127 (323)
T PHA02834 103 GVYFVGFFSNMFFVTLISIDRYILV 127 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 9999999999999999999999986
No 4
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.76 E-value=2.7e-17 Score=123.12 Aligned_cols=101 Identities=22% Similarity=0.481 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchh
Q psy14146 30 KQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQF 109 (133)
Q Consensus 30 ~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 109 (133)
.......++.+++++|++||+++++++.+ |++|++.++++.|||++|++.+ ...|.++... .++|.+|+..|++..+
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~-l~lPf~i~~~-~~~W~fg~~~Ck~~~~ 173 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFV-IDFPFIIYNE-FDQWIFGDFMCKVISA 173 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHH-HHHHHHHHHH-hccccccccchhhHHH
Confidence 34566678999999999999999987654 7888999999999999999885 5688777654 4679999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146 110 VAVLSICASVFTLMAISVDSTYQY 133 (133)
Q Consensus 110 ~~~~~~~~s~~~l~~isidRy~av 133 (133)
+......++.+.++++++|||+||
T Consensus 174 l~~~~~~~Si~~L~~isiDRYlaI 197 (417)
T PHA02638 174 SYYIGFFSNMFLITLMSIDRYFAI 197 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986
No 5
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.76 E-value=8.9e-18 Score=122.21 Aligned_cols=104 Identities=22% Similarity=0.460 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhc
Q psy14146 28 WWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107 (133)
Q Consensus 28 ~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 107 (133)
...+......+.+++++|++||+++++++.++ ++|++.++++.|||++|++.++. .|.........+|..++..|+..
T Consensus 37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~-~~~~~~~~~~~~~~~~~~~C~~~ 114 (335)
T PHA03087 37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMT-LPFQIYYYILFQWSFGEFACKIV 114 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHh-HHHHHHHHhCCCCCCCcHHHHHH
Confidence 44566777889999999999999999998887 88999999999999999987654 66665555567788899999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146 108 QFVAVLSICASVFTLMAISVDSTYQY 133 (133)
Q Consensus 108 ~~~~~~~~~~s~~~l~~isidRy~av 133 (133)
.+....+..+|.+++++|++|||+||
T Consensus 115 ~~~~~~~~~~S~~~l~~iaidRy~aI 140 (335)
T PHA03087 115 SGLYYIGFYNSMNFITVMSVDRYIAI 140 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999986
No 6
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.75 E-value=4.5e-17 Score=121.59 Aligned_cols=104 Identities=17% Similarity=0.118 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccch
Q psy14146 28 WWKQVMWTSLYAPMVVVATGGNLIVIWIVLA-HKRM-RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCK 105 (133)
Q Consensus 28 ~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~-~~~l-~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~ 105 (133)
...+.....++.++.++|++||+++++++.+ +|+. ++..++++.|||++|++. ++..|..+... ...|..|...|+
T Consensus 29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck 106 (409)
T PHA03235 29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCK 106 (409)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeeh
Confidence 4466678899999999999999999987543 3332 345578999999999987 45678765431 122334468999
Q ss_pred hchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146 106 VTQFVAVLSICASVFTLMAISVDSTYQY 133 (133)
Q Consensus 106 ~~~~~~~~~~~~s~~~l~~isidRy~av 133 (133)
+.++....+..+|++++++||+|||+||
T Consensus 107 ~~~~l~~~~~~~Si~tL~~ISiDRY~aI 134 (409)
T PHA03235 107 FASLLYYASCTVGFATVALIAADRYRVI 134 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 9999999999999999999999999986
No 7
>KOG4220|consensus
Probab=99.73 E-value=4.9e-20 Score=134.16 Aligned_cols=104 Identities=27% Similarity=0.505 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchh
Q psy14146 30 KQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQF 109 (133)
Q Consensus 30 ~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 109 (133)
.......+-..+++++++||++|++.+.-+|++++..|+|+.+||+||++.+.+.+|++..+.+.+.|++|...|.+...
T Consensus 29 q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLa 108 (503)
T KOG4220|consen 29 QVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLA 108 (503)
T ss_pred EEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHH
Confidence 33455567788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146 110 VAVLSICASVFTLMAISVDSTYQY 133 (133)
Q Consensus 110 ~~~~~~~~s~~~l~~isidRy~av 133 (133)
+.++...+|++++.+|++|||..|
T Consensus 109 lDYvaSNASVmNLLiISFDRYFsV 132 (503)
T KOG4220|consen 109 LDYVASNASVMNLLIISFDRYFSV 132 (503)
T ss_pred HHHHhhhhhhhhhheeeeecceee
Confidence 999999999999999999999875
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.66 E-value=5.2e-16 Score=107.17 Aligned_cols=86 Identities=37% Similarity=0.696 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchhHhHHHHHHHHHHHHHHHH
Q psy14146 48 GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISV 127 (133)
Q Consensus 48 ~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isi 127 (133)
||.++++++.++|++|++.++++.|||++|++.++...|........++|..++..|++..++...+...+.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999888887777766789999999999999999999999999999999
Q ss_pred HHhhcC
Q psy14146 128 DSTYQY 133 (133)
Q Consensus 128 dRy~av 133 (133)
|||+||
T Consensus 81 dRy~~i 86 (257)
T PF00001_consen 81 DRYLAI 86 (257)
T ss_dssp HHHHHH
T ss_pred cccccc
Confidence 999975
No 9
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.45 E-value=8.5e-14 Score=98.33 Aligned_cols=89 Identities=21% Similarity=0.354 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchhHhHHHHHHHHHHH
Q psy14146 43 VVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTL 122 (133)
Q Consensus 43 ~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l 122 (133)
++|++||..++..+.++|++|+|.++++..+|++|++++....|..... ..+....+..|..+.+...++...+...+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~--~~~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFL--FRDHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHH--HhheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999988777766533 33445678899999999999999999999
Q ss_pred HHHHHHHhhcC
Q psy14146 123 MAISVDSTYQY 133 (133)
Q Consensus 123 ~~isidRy~av 133 (133)
.+|++||++||
T Consensus 80 l~i~iDr~iaV 90 (257)
T PF10320_consen 80 LAIAIDRLIAV 90 (257)
T ss_pred HHHHhhheeeE
Confidence 99999999986
No 10
>KOG2087|consensus
Probab=99.19 E-value=2.3e-11 Score=87.93 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------Cccccccccchhch
Q psy14146 36 SLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLS-------SDWPFGRFYCKVTQ 108 (133)
Q Consensus 36 ~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~-------~~~~~~~~~C~~~~ 108 (133)
+...++..++++||.+++......|...++..+++.|||+||+++++...-+...+... .-|..+...|++.|
T Consensus 29 i~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aG 108 (363)
T KOG2087|consen 29 ISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAG 108 (363)
T ss_pred ehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHH
Confidence 45567888999999999998888777767889999999999999998766655554422 12335679999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146 109 FVAVLSICASVFTLMAISVDSTYQY 133 (133)
Q Consensus 109 ~~~~~~~~~s~~~l~~isidRy~av 133 (133)
|+..++...|++.++.+++||+++|
T Consensus 109 flavFASElSv~~LT~itlEr~l~i 133 (363)
T KOG2087|consen 109 FLAVFASELSVFLLTLITLERWLSI 133 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 9999999999999999999999875
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.81 E-value=5.6e-08 Score=69.25 Aligned_cols=92 Identities=13% Similarity=0.213 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-ccc-cchhchhHhHHHHHHH
Q psy14146 41 MVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPF-GRF-YCKVTQFVAVLSICAS 118 (133)
Q Consensus 41 ~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~-~~~-~C~~~~~~~~~~~~~s 118 (133)
++++|++.|.++++.+.+.|++|++.+.+-.+.+++|.+.++..... .......+... .+. .-.+.+.....+...+
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~-~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~ 81 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFW-VVPMTLLDISFLPSSLNSIIFGFIGMFCYFIG 81 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcccccCchHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999998754433 33322222222 222 3334478888889999
Q ss_pred HHHHHHHHHHHhhcC
Q psy14146 119 VFTLMAISVDSTYQY 133 (133)
Q Consensus 119 ~~~l~~isidRy~av 133 (133)
..+..+||++|+.||
T Consensus 82 ~~~~~liaiNRf~ai 96 (274)
T PF10328_consen 82 PLSHLLIAINRFCAI 96 (274)
T ss_pred HHHHHHHHHHHHhee
Confidence 999999999999986
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.34 E-value=2.9e-06 Score=61.53 Aligned_cols=92 Identities=11% Similarity=0.222 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cc----cccc---ccchhchhH
Q psy14146 41 MVVVATGGNLIVIWIVLAHKRMRT-VTNYFLVNLSLADAMVSTLNVTFNFVYMLSS--DW----PFGR---FYCKVTQFV 110 (133)
Q Consensus 41 ~~~~gi~~N~~vl~~~~~~~~l~~-~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~--~~----~~~~---~~C~~~~~~ 110 (133)
++++|+++|.+-+.++.| |++|+ +.|.++..+|++|++..+...+......... +. +.+. ........+
T Consensus 6 ~~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l 84 (318)
T PF10324_consen 6 LSIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESL 84 (318)
T ss_pred EeHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Confidence 467899999999998855 66665 8999999999999999888777666443322 11 1111 122334567
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcC
Q psy14146 111 AVLSICASVFTLMAISVDSTYQY 133 (133)
Q Consensus 111 ~~~~~~~s~~~l~~isidRy~av 133 (133)
...+...|.|..++||+.|+++|
T Consensus 85 ~~~~~~~S~WL~V~mA~iR~l~i 107 (318)
T PF10324_consen 85 SDIFRRISIWLGVLMALIRYLSI 107 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999874
No 13
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.30 E-value=2.2e-05 Score=53.74 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=57.0
Q ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchhHhHHHHHHHHHHHHHHHHHHhhc
Q psy14146 60 KRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQ 132 (133)
Q Consensus 60 ~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~a 132 (133)
++++.-++-++.||.++|++.++........+...++-..+...|..++++...+...+-+...++|++-|+.
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~ 102 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLI 102 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556679999999999998775543445544444445678999999999999999999999999988764
No 14
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=97.96 E-value=0.00047 Score=50.06 Aligned_cols=101 Identities=13% Similarity=0.204 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchh
Q psy14146 30 KQVMWTSLYAPMVVVATGGNLIVIWIVLAH---KRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKV 106 (133)
Q Consensus 30 ~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~---~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 106 (133)
.+.....+.....++|++||..++.+..++ ++.-+|.+..+.+||++.++...............++....+..++.
T Consensus 5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (303)
T PF05296_consen 5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKI 84 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHH
Confidence 455667888899999999999999887663 22235899999999999998865544444444444544455668888
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHh
Q psy14146 107 TQFVAVLSICASVFTLMAISVDST 130 (133)
Q Consensus 107 ~~~~~~~~~~~s~~~l~~isidRy 130 (133)
..+...+....|.|.-+.+++-=+
T Consensus 85 ~~~~~~f~~~~s~W~tt~LsvfYc 108 (303)
T PF05296_consen 85 IDFLWMFSNSSSLWFTTWLSVFYC 108 (303)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHh
Confidence 888888888999999888887544
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.90 E-value=0.00046 Score=50.09 Aligned_cols=96 Identities=19% Similarity=0.255 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchhHhH
Q psy14146 33 MWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAV 112 (133)
Q Consensus 33 ~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 112 (133)
.+..+..+..++.++|-++++....+.|++|+|.+-++.-++++|++..+..... .. .++...+...|.+++++..
T Consensus 8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~---~~-~~~~~~~s~lC~~Qafliq 83 (303)
T PF05462_consen 8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIM---TL-SPSAGENSFLCQFQAFLIQ 83 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH---Hh-cccCCCCCcchhhHhHHHH
Confidence 3445566778889999999999999999999999999999999999876543221 11 2223345689999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy14146 113 LSICASVFTLMAISVDSTYQ 132 (133)
Q Consensus 113 ~~~~~s~~~l~~isidRy~a 132 (133)
.+..++.+=.++||++=|..
T Consensus 84 ~f~~as~lWt~~iA~nly~~ 103 (303)
T PF05462_consen 84 FFMLASFLWTLCIAFNLYLT 103 (303)
T ss_pred HhhHHHHHHHHHHHHHhhhe
Confidence 99999988888899887653
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.62 E-value=0.0013 Score=48.03 Aligned_cols=99 Identities=11% Similarity=0.178 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc---
Q psy14146 28 WWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYC--- 104 (133)
Q Consensus 28 ~~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C--- 104 (133)
...+......+.+.+++-.+.....++++.+++..|.|.+-.+.-|++.|+..........-..... |...|
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~-----G~vfC~~P 103 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIF-----GAVFCSYP 103 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhc-----CccccCCc
Confidence 4556677777888888888889999999988887788999999999999999875532222222222 22333
Q ss_pred ---hhchhHhHHHHHHHHHHHHHHHHHHhh
Q psy14146 105 ---KVTQFVAVLSICASVFTLMAISVDSTY 131 (133)
Q Consensus 105 ---~~~~~~~~~~~~~s~~~l~~isidRy~ 131 (133)
.+.|.....+...+...-..++++|..
T Consensus 104 ~~~~i~G~~~~~~W~~~c~~~i~LainR~~ 133 (313)
T PF10321_consen 104 RFIYIMGCIALGSWCGSCIICILLAINRCC 133 (313)
T ss_pred hHhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence 344556667788899999999999975
No 17
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=97.46 E-value=0.0046 Score=45.28 Aligned_cols=98 Identities=10% Similarity=0.141 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcC----ccccccccchhc
Q psy14146 35 TSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNF---VYMLSS----DWPFGRFYCKVT 107 (133)
Q Consensus 35 ~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~---~~~~~~----~~~~~~~~C~~~ 107 (133)
..+-.+++++|++.++..+....+++.+|.-..+++....++.+++++....... ...... +.......|...
T Consensus 20 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~l 99 (324)
T PF10292_consen 20 LIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFIL 99 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHH
Confidence 3446677788888888888877777788876778888888888888755433332 222221 233456788888
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhc
Q psy14146 108 QFVAVLSICASVFTLMAISVDSTYQ 132 (133)
Q Consensus 108 ~~~~~~~~~~s~~~l~~isidRy~a 132 (133)
......+......+..++++||++|
T Consensus 100 R~~~~~~~~~~~~t~v~l~IER~iA 124 (324)
T PF10292_consen 100 RIPYNFGLFLVSFTTVSLVIERTIA 124 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999987
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=97.10 E-value=0.0091 Score=43.05 Aligned_cols=95 Identities=9% Similarity=0.170 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-----------ccccccc
Q psy14146 37 LYAPMVVVATGGNLIVIWIVLAHK-RMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDW-----------PFGRFYC 104 (133)
Q Consensus 37 ~~~~~~~~gi~~N~~vl~~~~~~~-~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~-----------~~~~~~C 104 (133)
++.+.+.+|++.|.++++.+.++. +.-+...+++.|-|+.|++.++...-.. ......++ ..|...|
T Consensus 4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q-~R~i~~~~~~~~~~~GpC~~~~~~~C 82 (292)
T PF10317_consen 4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQ-PRIIPNGTSIAVISYGPCRYFGPWFC 82 (292)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccCCCCcEEEEeeecceecCcHHH
Confidence 456788999999999999987764 3335678999999999999976543322 22222221 2456778
Q ss_pred hhchhHhHHHHHHHHHHHHHHHHHHhhc
Q psy14146 105 KVTQFVAVLSICASVFTLMAISVDSTYQ 132 (133)
Q Consensus 105 ~~~~~~~~~~~~~s~~~l~~isidRy~a 132 (133)
.....+...+...+.+++.+--+.||..
T Consensus 83 ~~~y~~~~~~~~~s~~~i~~sf~yRy~i 110 (292)
T PF10317_consen 83 FFCYHIMLHFSIHSGWSIILSFYYRYYI 110 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777778888888888888899875
No 19
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=96.97 E-value=0.0083 Score=43.15 Aligned_cols=90 Identities=10% Similarity=0.233 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhcCc----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCc--cccccccchhchhHhHHHH
Q psy14146 44 VATGGNLIVIWIVLAHKR----MRTVTNYFLVNLSLADAMVSTLNVTFNFVYML--SSD--WPFGRFYCKVTQFVAVLSI 115 (133)
Q Consensus 44 ~gi~~N~~vl~~~~~~~~----l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~--~~~--~~~~~~~C~~~~~~~~~~~ 115 (133)
+.+.-...+++.+.+.|+ ++++.+-++.+.+++|++..+........... ..+ ...++..-++.....+...
T Consensus 7 ~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~ 86 (283)
T PF10323_consen 7 VTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFL 86 (283)
T ss_pred ehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 344445566666655443 56899999999999999987664443332221 111 1122233456666777778
Q ss_pred HHHHHHHHHHHHHHhhcC
Q psy14146 116 CASVFTLMAISVDSTYQY 133 (133)
Q Consensus 116 ~~s~~~l~~isidRy~av 133 (133)
.......+.+|+.||.||
T Consensus 87 ~~~~~gi~lls~nR~~ai 104 (283)
T PF10323_consen 87 YIQCIGIVLLSLNRYLAI 104 (283)
T ss_pred HHHHHhHHHHHHhhhheE
Confidence 889999999999999986
No 20
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.67 E-value=0.0063 Score=43.40 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=52.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCccccccccchhchhHhHHHHHHHHHHHHHHHHHHh
Q psy14146 61 RMRTVTNYFLVNLSLADAMVSTL-NVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDST 130 (133)
Q Consensus 61 ~l~~~~~~~l~~La~aDl~~~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy 130 (133)
+..+|.+..+.||++|+.+..+. +.|..... .+...+++.+||...|...++...|+.+.+++|+-.-
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~--~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQA 74 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMAF--FGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSVFQA 74 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHH--hhcccCCCceeeeeeeehHHhchhhHHhhhHHHHHhh
Confidence 34568999999999999999766 44433222 2222358899999999999999999999999987543
No 21
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=96.53 E-value=0.039 Score=39.64 Aligned_cols=99 Identities=7% Similarity=0.029 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CccccccccchhchhHh
Q psy14146 35 TSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLS---SDWPFGRFYCKVTQFVA 111 (133)
Q Consensus 35 ~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~---~~~~~~~~~C~~~~~~~ 111 (133)
..+-.+.+.+....|..+++.+.++|+.+++...+..--...|.+.+....+........ ++....+..=...+...
T Consensus 9 ~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~p~ 88 (273)
T PF10316_consen 9 SIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGWPS 88 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhhhH
Confidence 344556777888999999999987777434544455556788999987765544433321 11110122222334455
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q psy14146 112 VLSICASVFTLMAISVDSTYQY 133 (133)
Q Consensus 112 ~~~~~~s~~~l~~isidRy~av 133 (133)
...+.........+|+||.+|+
T Consensus 89 ~~~~~iR~~l~~~Ia~dR~~A~ 110 (273)
T PF10316_consen 89 SNLGSIRSILALIIALDRVFAV 110 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5557788889999999999884
No 22
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=94.60 E-value=1.3 Score=32.70 Aligned_cols=98 Identities=11% Similarity=0.131 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCc-hHHHHHHHHHHHHHHHHHHHHH-HH-H-HHHhcCc----cccccccchh
Q psy14146 35 TSLYAPMVVVATGGNLIVIWIVLAHKRMRT-VTNYFLVNLSLADAMVSTLNVT-FN-F-VYMLSSD----WPFGRFYCKV 106 (133)
Q Consensus 35 ~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~-~~~~~l~~La~aDl~~~~~~~~-~~-~-~~~~~~~----~~~~~~~C~~ 106 (133)
..+..++.+++.++....+..+.++.-.+. .+..++.+|..+++=......- .. + ..+...+ .......|..
T Consensus 24 ~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~eC~~ 103 (328)
T PF02117_consen 24 QIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSSECFP 103 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecCceee
Confidence 445556667777777777777766665554 4455556666555533222111 11 1 1111122 3356778998
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHhhc
Q psy14146 107 TQFVAVLSICASVFTLMAISVDSTYQ 132 (133)
Q Consensus 107 ~~~~~~~~~~~s~~~l~~isidRy~a 132 (133)
......++.....+.-+++.+||-+|
T Consensus 104 ~~~~~~~~~~~~~~~q~aL~idRl~a 129 (328)
T PF02117_consen 104 YYYFYYFTNSGMIFIQFALTIDRLLA 129 (328)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999899999999999999876
No 23
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=94.51 E-value=0.54 Score=33.24 Aligned_cols=93 Identities=5% Similarity=0.045 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCc--C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC------cc-ccccccchhchh
Q psy14146 41 MVVVATGGNLIVIWIVLAHKR--M-RTVTNYFLVNLSLADAMVSTLNVTFNFVYML-SS------DW-PFGRFYCKVTQF 109 (133)
Q Consensus 41 ~~~~gi~~N~~vl~~~~~~~~--l-~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~-~~------~~-~~~~~~C~~~~~ 109 (133)
-++.+++.+..+++++.++|+ . +++.+.+...-++.+++.-+...+..-.... .+ .+ +..+.......+
T Consensus 7 Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (275)
T PF02118_consen 7 YGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYF 86 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHH
Confidence 345566677788888877776 4 6677776666667777665444333111111 00 00 122345566667
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146 110 VAVLSICASVFTLMAISVDSTYQY 133 (133)
Q Consensus 110 ~~~~~~~~s~~~l~~isidRy~av 133 (133)
+...+..+...+...+|++|+-+|
T Consensus 87 l~~~~~~~Q~~~~~~is~nR~t~v 110 (275)
T PF02118_consen 87 LQYYFAYVQYLSTILISLNRFTSV 110 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999998653
No 24
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=92.97 E-value=0.068 Score=37.17 Aligned_cols=89 Identities=15% Similarity=0.102 Sum_probs=0.7
Q ss_pred HHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchhHhHHHHHHHHHH
Q psy14146 42 VVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 121 (133)
Q Consensus 42 ~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~ 121 (133)
+.+.+++-.+.+......|++|+.++....||++++++..+..... ......+..+..+..|...+.+...+..++..=
T Consensus 11 ~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~la~f~W 89 (242)
T PF00002_consen 11 CSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFFLASFFW 89 (242)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHHHHHHHH
Confidence 3334444445555555567777777788889999998876543211 111101111011235999999888888887777
Q ss_pred HHHHHHHHhh
Q psy14146 122 LMAISVDSTY 131 (133)
Q Consensus 122 l~~isidRy~ 131 (133)
+.+.+++-|.
T Consensus 90 m~~~~~~l~~ 99 (242)
T PF00002_consen 90 MLVEAFYLYR 99 (242)
T ss_dssp ----------
T ss_pred HHHHHHHhhe
Confidence 7777777654
No 25
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=92.41 E-value=0.28 Score=35.46 Aligned_cols=94 Identities=11% Similarity=0.086 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------Cccccccccchhch
Q psy14146 40 PMVVVATGGNLIVIWIVLAHKRMR-TVTNYFLVNLSLADAMVSTLNVTFNFVYMLS----------SDWPFGRFYCKVTQ 108 (133)
Q Consensus 40 ~~~~~gi~~N~~vl~~~~~~~~l~-~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~----------~~~~~~~~~C~~~~ 108 (133)
+..+++++.|.+.++.+.++.+.+ ..-.+++...|+.|++.+..-....-..+.. +++..++.......
T Consensus 7 ~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (307)
T PF10326_consen 7 IGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQILL 86 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeehh
Confidence 456788999999999987653332 3345677788888888876543222211111 11223344455555
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146 109 FVAVLSICASVFTLMAISVDSTYQY 133 (133)
Q Consensus 109 ~~~~~~~~~s~~~l~~isidRy~av 133 (133)
.....+...+...++.-=+.||.||
T Consensus 87 ~~y~~~f~~~~~llaihFiYRY~av 111 (307)
T PF10326_consen 87 AIYCGCFGMSFSLLAIHFIYRYWAV 111 (307)
T ss_pred hhhhhhHHHHHHHHHhHhhhheeee
Confidence 5666667777777777778999875
No 26
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=89.09 E-value=7.7 Score=29.43 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-----------cccccchhchhHhHHHHHHHHHHHHHHHHHHhhc
Q psy14146 67 NYFLVNLSLADAMVSTLNVTFNFVYMLSSDWP-----------FGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQ 132 (133)
Q Consensus 67 ~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~-----------~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~a 132 (133)
.-.+..+++||++.++-...-...+...++.. .....|........+++.++-+=..+-|+|-|+.
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv 144 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLV 144 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 35677999999999876655555665444221 1236888887777788889989899999998874
No 27
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=86.86 E-value=2.1 Score=29.58 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=25.9
Q ss_pred cccccchhchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146 99 FGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQY 133 (133)
Q Consensus 99 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~av 133 (133)
.+-..|.+..-+...+...+-...+++|++||.-|
T Consensus 112 ytI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~V 146 (226)
T PF06681_consen 112 YTIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIV 146 (226)
T ss_pred EEEEeehHHHhHHHHHhhhhccchhhhhhhhhhee
Confidence 45678988777666666666666778999999754
No 28
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=81.12 E-value=17 Score=25.72 Aligned_cols=34 Identities=3% Similarity=0.113 Sum_probs=27.4
Q ss_pred ccccchhchhHhHHHHHHHHHHHHHHHHHHhhcC
Q psy14146 100 GRFYCKVTQFVAVLSICASVFTLMAISVDSTYQY 133 (133)
Q Consensus 100 ~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~av 133 (133)
.+..++.......+..+.+.+....+++||++|.
T Consensus 81 ~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl 114 (236)
T PF02175_consen 81 DPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIAL 114 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4456666667777888899999999999999983
No 29
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=79.65 E-value=23 Score=26.46 Aligned_cols=104 Identities=12% Similarity=0.220 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcC---------c
Q psy14146 29 WKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSL---ADAMVSTLNVTFNFVYMLSS---------D 96 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~---aDl~~~~~~~~~~~~~~~~~---------~ 96 (133)
........+-.+..+++..-......++.+.|..|.-.+.+...... -+++.-....|........+ -
T Consensus 24 ~~~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~ 103 (365)
T PF03125_consen 24 WFYIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQW 103 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhh
Confidence 34444455555555555555555567777778777644444443332 22333333344433222111 0
Q ss_pred cccc------------cccchhchhHhHHHHHHHHHHHHHHHHHHhhc
Q psy14146 97 WPFG------------RFYCKVTQFVAVLSICASVFTLMAISVDSTYQ 132 (133)
Q Consensus 97 ~~~~------------~~~C~~~~~~~~~~~~~s~~~l~~isidRy~a 132 (133)
|+.. ...-.+.+++..-........+.++++||..|
T Consensus 104 ~t~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~A 151 (365)
T PF03125_consen 104 WTDDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFA 151 (365)
T ss_pred hccCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11222334455555566689999999999887
No 30
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=77.94 E-value=24 Score=25.72 Aligned_cols=81 Identities=15% Similarity=0.285 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCccccccccchhchhHhHHHHHHHHHHHHHH
Q psy14146 50 LIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLN----VTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAI 125 (133)
Q Consensus 50 ~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~----~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~i 125 (133)
.+++.++...+-.+.+..+++..|.++-++..... .|-.......++.. ....-.+..+...++..+-.++=.++
T Consensus 33 Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~-~s~~f~~~Sy~idf~h~siLfsNlvi 111 (305)
T PF04789_consen 33 FLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFV-QSELFIFMSYLIDFCHYSILFSNLVI 111 (305)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHh-ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333467899999999888876443 33333333333222 23455667788888999999999999
Q ss_pred HHHHhh
Q psy14146 126 SVDSTY 131 (133)
Q Consensus 126 sidRy~ 131 (133)
|+.|..
T Consensus 112 aIqR~f 117 (305)
T PF04789_consen 112 AIQRFF 117 (305)
T ss_pred HHhhhe
Confidence 999953
No 31
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=68.85 E-value=25 Score=25.59 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCCchHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy14146 32 VMWTSLYAPMVVVATGGNLIVIWIVLAH-KRMRTVTNYFLV---NLSLADAMVSTLNVTFNFVYM 92 (133)
Q Consensus 32 ~~~~~~~~~~~~~gi~~N~~vl~~~~~~-~~l~~~~~~~l~---~La~aDl~~~~~~~~~~~~~~ 92 (133)
.++...+-+++.+.++.|.+.++.+..+ +++.+-+++++. ...++|+-...+..|......
T Consensus 9 ~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~ 73 (303)
T PF10327_consen 9 QWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPI 73 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcce
Confidence 3556778889999999999999887664 455554454443 345789988878777766554
No 32
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=59.83 E-value=17 Score=22.95 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHh
Q psy14146 44 VATGGNLIVIWIVLA 58 (133)
Q Consensus 44 ~gi~~N~~vl~~~~~ 58 (133)
.|++|=++.+...++
T Consensus 75 aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 75 AGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 33
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=53.86 E-value=42 Score=19.39 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy14146 43 VVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFN 88 (133)
Q Consensus 43 ~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~ 88 (133)
+.|+++=...+.++..+.+.++-.+.-..|-+++.++....-.|+.
T Consensus 5 i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g 50 (78)
T PF09882_consen 5 IIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMG 50 (78)
T ss_pred HHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHH
Confidence 3444444445555555555666668888899999888876655543
No 34
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=44.69 E-value=1.1e+02 Score=21.80 Aligned_cols=98 Identities=11% Similarity=0.189 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--cCCchHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC----cccccccc
Q psy14146 34 WTSLYAPMVVVATGGNLIVIWIVLAHK--RMRTVTNYFLVN----LSLADAMVSTLNVTFNFVYMLSS----DWPFGRFY 103 (133)
Q Consensus 34 ~~~~~~~~~~~gi~~N~~vl~~~~~~~--~l~~~~~~~l~~----La~aDl~~~~~~~~~~~~~~~~~----~~~~~~~~ 103 (133)
.....-++..+.+.-|++.++.+.++. ++++. ...+.+ ..+.|+..+.+..|........+ -...-+..
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~-k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~ 84 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSV-KWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVP 84 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHH-HHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccC
Confidence 344555677778888888888776653 33333 333333 33578888877777544332211 11111234
Q ss_pred chhchhHhHHHHHHHHHHHHHHHHHHhhc
Q psy14146 104 CKVTQFVAVLSICASVFTLMAISVDSTYQ 132 (133)
Q Consensus 104 C~~~~~~~~~~~~~s~~~l~~isidRy~a 132 (133)
..++.+...........+...+=-.||-+
T Consensus 85 ~~~q~~i~~~~~~~~~~S~~~lFe~R~~~ 113 (302)
T PF10318_consen 85 TPIQFYIGVTLLAFVGVSILSLFENRYQI 113 (302)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 56666777777777777777777788754
No 35
>PF02116 STE2: Fungal pheromone mating factor STE2 GPCR; InterPro: IPR000366 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures.; GO: 0004932 mating-type factor pheromone receptor activity, 0016020 membrane; PDB: 2K9P_A.
Probab=42.75 E-value=1.3e+02 Score=21.94 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchH
Q psy14146 30 KQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVT 66 (133)
Q Consensus 30 ~~~~~~~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~ 66 (133)
.+.-..+.|..-.-.+.+. .+++..+.++||+|+|.
T Consensus 31 ~~~~~~I~yg~qiGA~~~l-livL~llt~~~Krktpi 66 (284)
T PF02116_consen 31 YNVRTAINYGVQIGACLLL-LIVLWLLTKSEKRKTPI 66 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHT--S-----H
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhcCcccccChH
Confidence 3344445555544444222 34455556666666654
No 36
>KOG4193|consensus
Probab=41.92 E-value=1.9e+02 Score=23.62 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=41.4
Q ss_pred HHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc-c-cchhchhHhHHHHHHHHHHHHHHHHH
Q psy14146 51 IVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGR-F-YCKVTQFVAVLSICASVFTLMAISVD 128 (133)
Q Consensus 51 ~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~-~-~C~~~~~~~~~~~~~s~~~l~~isid 128 (133)
+.+....-.|+++.-.+....||+++=++.- ..++.+.|..+. . .|+....+..++.-++.+=+.++++.
T Consensus 339 lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~--------l~fL~~~~~~~~~~~~C~~~a~llhff~LaaF~Wm~leg~h 410 (610)
T KOG4193|consen 339 LTIATYLLFRKLQNDRTKIHINLCLCLFLAE--------LLFLLGIDRTSTSVVLCIAAAILLHFFFLAAFFWMLLEGFH 410 (610)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--------HHHhcccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444454434666668887722221 111223333322 2 69999988888888887777777766
Q ss_pred Hhh
Q psy14146 129 STY 131 (133)
Q Consensus 129 Ry~ 131 (133)
=|.
T Consensus 411 l~~ 413 (610)
T KOG4193|consen 411 LYL 413 (610)
T ss_pred HHH
Confidence 553
No 37
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=35.65 E-value=63 Score=17.32 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy14146 39 APMVVVATGGNLIVIWIVLA 58 (133)
Q Consensus 39 ~~~~~~gi~~N~~vl~~~~~ 58 (133)
.++.+-.++||+.++-.-.+
T Consensus 9 IviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 9 IVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHHhHHHHHHHhcc
Confidence 34444456899888765443
No 38
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=31.87 E-value=83 Score=23.31 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCc-hHHHHHHHHHHHHHHHHHH
Q psy14146 37 LYAPMVVVATGGNLIVIWIVLAHKRMRT-VTNYFLVNLSLADAMVSTL 83 (133)
Q Consensus 37 ~~~~~~~~gi~~N~~vl~~~~~~~~l~~-~~~~~l~~La~aDl~~~~~ 83 (133)
+--+.+++..+.|.+-++.+..+|+.+- .-.+++..-|+-|++..+.
T Consensus 10 ~Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~ 57 (310)
T PF10319_consen 10 IPKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVV 57 (310)
T ss_pred HHHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHH
Confidence 3445677888899999999999887764 5678888999999988765
No 39
>KOG4564|consensus
Probab=25.60 E-value=3.4e+02 Score=21.51 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc------------ccccccc
Q psy14146 36 SLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSD------------WPFGRFY 103 (133)
Q Consensus 36 ~~~~~~~~~gi~~N~~vl~~~~~~~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~------------~~~~~~~ 103 (133)
.+|.+-..+.++.=++.+.++..-|++|-.+|+.=.||-++=++-++........-..... ..-+...
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence 3455544455555455556667788999888888889988877776553322221111111 0134568
Q ss_pred chhchhHhHHHHHHHH
Q psy14146 104 CKVTQFVAVLSICASV 119 (133)
Q Consensus 104 C~~~~~~~~~~~~~s~ 119 (133)
|+....+...+..+..
T Consensus 229 Ck~~~~~~~Yf~~aNf 244 (473)
T KOG4564|consen 229 CKLLFVFFQYFVLANF 244 (473)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9887766665554443
No 40
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=24.18 E-value=2.9e+02 Score=20.11 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhc-CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhchhHhHHHHHHHHHHHH
Q psy14146 45 ATGGNLIVIWIVLAH-KRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLM 123 (133)
Q Consensus 45 gi~~N~~vl~~~~~~-~~l~~~~~~~l~~La~aDl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~ 123 (133)
+.++..+.+.-+..+ |..+.+.-.++.-+.+.++...+... .+-.+. .+|. +.+|.+...+.......-.....
T Consensus 4 s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INai-IW~~n~--~~~~--~~wCDI~~kl~~~~~~g~~~a~l 78 (283)
T PF02076_consen 4 SFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINAI-IWRDND--INWW--PVWCDISTKLIIGSSVGIPAASL 78 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhhh-hcCCCC--CccC--ceeeeehHHHHHHHHHHHHHHHH
Confidence 344444555444433 44456778888888888887754421 111111 1222 38999888777766655444444
Q ss_pred HHH
Q psy14146 124 AIS 126 (133)
Q Consensus 124 ~is 126 (133)
+++
T Consensus 79 cI~ 81 (283)
T PF02076_consen 79 CIM 81 (283)
T ss_pred HHH
Confidence 443
No 41
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=23.35 E-value=2.1e+02 Score=21.66 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q psy14146 35 TSLYAPMVVVATGGNLIVIWIVLAHKRM 62 (133)
Q Consensus 35 ~~~~~~~~~~gi~~N~~vl~~~~~~~~l 62 (133)
.+...++.++.++.-.+++|.+.|-||-
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456667777777777777777765443
No 42
>PTZ00046 rifin; Provisional
Probab=22.85 E-value=2.2e+02 Score=21.61 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q psy14146 35 TSLYAPMVVVATGGNLIVIWIVLAHKRM 62 (133)
Q Consensus 35 ~~~~~~~~~~gi~~N~~vl~~~~~~~~l 62 (133)
.+...++.++.++.-.+++|.+.|-||-
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRK 343 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456667777777777777777775543
Done!