RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14146
(133 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 82.7 bits (205), Expect = 2e-20
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 54 WIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVL 113
++L K++RT TN FL+NL++AD + + Y++ DWPFG CK+ F+ V+
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60
Query: 114 SICASVFTLMAISVD 128
+ AS+ L AIS+D
Sbjct: 61 NGYASILLLTAISID 75
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 42.5 bits (100), Expect = 2e-05
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 48 GNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVT 107
GN+IVI VL +++T + +L+NL+++D ++ + + F Y + W FG F CK+
Sbjct: 57 GNIIVI-YVLTKTKIKTPMDIYLLNLAVSD-LLFVMTLPFQIYYYILFQWSFGEFACKIV 114
Query: 108 QFVAVLSICASVFTLMAISVDSTY 131
+ + S+ + +SVD
Sbjct: 115 SGLYYIGFYNSMNFITVMSVDRYI 138
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 38.5 bits (89), Expect = 4e-04
Identities = 23/95 (24%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 37 LYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSD 96
Y + ++ GN +I ++L K+++T+T+ ++ NL+++D ++ ++ F +Y
Sbjct: 104 FYIIIFILGLFGNAAII-MILFCKKIKTITDIYIFNLAISD-LIFVIDFPF-IIYNEFDQ 160
Query: 97 WPFGRFYCKVTQFVAVLSICASVFTLMAISVDSTY 131
W FG F CKV + +++F + +S+D +
Sbjct: 161 WIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYF 195
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 37.6 bits (87), Expect = 7e-04
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 37 LYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSD 96
Y + + GN++VI VL KR V + +L N++++D M+ F+F +++ +D
Sbjct: 34 FYILLFIFGLIGNVLVI-AVLIVKRFMFVVDVYLFNIAMSDLML-----VFSFPFIIHND 87
Query: 97 ---WPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
W FG F CK+ V + +++F + IS+D
Sbjct: 88 LNEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISID 122
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 32.2 bits (74), Expect = 0.056
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 43 VVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRF 102
V+ GN+I+I + K++R+ +Y + LAD + L+ FV +L + R
Sbjct: 2 VIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLC--LSGEIIFVVLLFTGTQLTRN 59
Query: 103 YCKVTQFVAVLSICASVFTLMAISVD 128
C + + A ++ I +D
Sbjct: 60 ECFLIIIPYIFGQTAQSPLMLMIGID 85
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 28.9 bits (65), Expect = 0.81
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 74 SLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQF-VAVLSICASVFTLMA 124
L+D M V N + ML D+ F RF K QF +L ++ LM+
Sbjct: 175 DLSDGMTFGERV-KNMLIMLYFDFWFQRFPKKWDQFASELLGRPVTLPELMS 225
>gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme
oxidoreductase/phosphotransacetylase; Reviewed.
Length = 752
Score = 28.1 bits (64), Expect = 1.5
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 58 AHKRMRTVTNYF---LVNLSLADAMVS 81
A + +R +V ADAM+
Sbjct: 525 ARRLVRRDRTVIGAMMVARGDADAMIC 551
>gnl|CDD|222802 PHA00497, pol, RNA-dependent RNA polymerase.
Length = 673
Score = 26.7 bits (59), Expect = 4.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 23 QFEQPWWKQVMWTSLYAPMVVVATG 47
+ PWW ++ + P+ V A G
Sbjct: 370 EMFAPWWMELARSLHRLPVYVRAPG 394
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 26.6 bits (59), Expect = 4.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 27 PWWKQVMWTSLYAPMVVVAT 46
P W + W+S +AP AT
Sbjct: 134 PGWAKHAWSSFFAPWNAGAT 153
>gnl|CDD|236609 PRK09653, eutD, phosphotransacetylase; Reviewed.
Length = 324
Score = 26.0 bits (58), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 58 AHKRMRTVTNYF---LVNLSLADAMVS 81
A + ++ NYF LV L AD MVS
Sbjct: 97 AAELLKDP-NYFGTMLVKLGKADGMVS 122
>gnl|CDD|217050 pfam02460, Patched, Patched family. The transmembrane protein
Patched is a receptor for the morphogene Sonic Hedgehog.
This protein associates with the smoothened protein to
transduce hedgehog signals.
Length = 801
Score = 26.2 bits (58), Expect = 7.7
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 22/122 (18%)
Query: 24 FEQPWWKQVMW---TSLYAPMV---VVATGGNLIVIWIVLAH--KRMRTVTNYF------ 69
PW ++W + V T G + W + R V + +
Sbjct: 571 GNSPWQGDLVWDNKSDDNTTEVTKFRFTTAGKDLSTWTDRTRLLQEWRGVADEYPEFNVT 630
Query: 70 -----LVNLSLADAMVSTL--NVTFNFVYMLSSDWPF-GRFYCKVTQFVAVLSICASVFT 121
L ++ ++ + + M + F C +A+ SIC VF
Sbjct: 631 VFDEDSPFLDQILTILPDTIQSIIWTLICMAIVCFLFIPNPNCVFVITLAIASICIGVFG 690
Query: 122 LM 123
+
Sbjct: 691 FL 692
>gnl|CDD|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein. The CorA
transport system is the primary Mg2+ influx system of
Salmonella typhimurium and Escherichia coli. CorA is
virtually ubiquitous in the Bacteria and Archaea. There
are also eukaryotic relatives of this protein. The
family includes the MRS2 protein from yeast that is
thought to be an RNA splicing protein. However its
membership of this family suggests that its effect on
splicing is due to altered magnesium levels in the cell.
Length = 291
Score = 25.7 bits (57), Expect = 9.1
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 88 NFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAI 125
NF M DWP+G F VL + + L+ +
Sbjct: 256 NFKGMPELDWPYGYP------FWIVLGLMLLLAILLIL 287
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.132 0.421
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,397,872
Number of extensions: 536584
Number of successful extensions: 683
Number of sequences better than 10.0: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 43
Length of query: 133
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 47
Effective length of database: 7,123,158
Effective search space: 334788426
Effective search space used: 334788426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)