RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14146
(133 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 142 bits (361), Expect = 1e-42
Identities = 52/128 (40%), Positives = 85/128 (66%), Gaps = 5/128 (3%)
Query: 6 NNLTWIMANDTVESSSN-----QFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHK 60
+N+ + ++ + S+N QF QP W+ V+W + Y +VV + GN++V+WI+LAHK
Sbjct: 2 DNVLPVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHK 61
Query: 61 RMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVF 120
RMRTVTNYFLVNL+ A+A ++ N NF Y + ++W +G FYCK F + ++ AS++
Sbjct: 62 RMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIY 121
Query: 121 TLMAISVD 128
++ A++ D
Sbjct: 122 SMTAVAFD 129
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 126 bits (318), Expect = 2e-36
Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
Query: 5 ENNLTWIMANDTVESSS-----NQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAH 59
N +N T S + W+ M + ++++ N + +++ + H
Sbjct: 7 GPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQH 66
Query: 60 KRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASV 119
K++RT NY L+NL++AD + T L + FG C + F A L ++
Sbjct: 67 KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIAL 126
Query: 120 FTLMAISVD 128
++L+ ++++
Sbjct: 127 WSLVVLAIE 135
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 127 bits (320), Expect = 3e-36
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 2 SLYENNLTWIMANDTVESSSNQFE---QPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLA 58
+ E T + ++ P +V LY + V GN +V++++L
Sbjct: 93 KVKEAQAAAEQLKTTRNAYIQKYLGAFLPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILR 152
Query: 59 HKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICAS 118
H +M+T TN ++ NL+LAD +V L + F +L WPFG CK + ++ S
Sbjct: 153 HTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTS 211
Query: 119 VFTLMAISVD 128
FTL A+SVD
Sbjct: 212 TFTLTAMSVD 221
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 95.4 bits (237), Expect = 3e-24
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 3/130 (2%)
Query: 2 SLYENNLTWIMANDTVESSSNQFEQPWWKQVMWTSLYAPM---VVVATGGNLIVIWIVLA 58
S + N + ++ +V + M V+ GN++VI +
Sbjct: 150 SRWYNQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAK 209
Query: 59 HKRMRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICAS 118
+R++TVTNYF+ +L+ AD ++ V F ++L+ W FG F+C+ + VL + AS
Sbjct: 210 FERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTAS 269
Query: 119 VFTLMAISVD 128
+ TL I+VD
Sbjct: 270 IETLCVIAVD 279
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 94.8 bits (235), Expect = 5e-24
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 14 NDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNL 73
+D P ++ ++ + V+A GN++V W V + ++ VTNYF+V+L
Sbjct: 4 DDDDAMGQPVGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSL 63
Query: 74 SLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
+ AD V L + F + C ++ +S+F+L+AI++D
Sbjct: 64 AAADIAVGVLAIPFAITISTG--FCAACHGCLFIACFVLVLTQSSIFSLLAIAID 116
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 94.8 bits (235), Expect = 5e-24
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 6 NNLTWIMANDTVESSSNQFEQPW---WKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRM 62
N + + + + V + + +V+ GN++VI + +R+
Sbjct: 12 GNGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERL 71
Query: 63 RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTL 122
+TVTNYF+ +L+ AD ++ V F ++L W FG F+C+ + VL + AS+ TL
Sbjct: 72 QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETL 131
Query: 123 MAISVD 128
I+VD
Sbjct: 132 CVIAVD 137
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 94.4 bits (234), Expect = 6e-24
Identities = 27/115 (23%), Positives = 55/115 (47%)
Query: 14 NDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNL 73
+ + S + ++ V + + +V GN++V+ + ++ ++TV NYFL +L
Sbjct: 6 DSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSL 65
Query: 74 SLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
+ AD ++ ++ +Y + WP G C + + + ASV L+ IS D
Sbjct: 66 ACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFD 120
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 92.1 bits (228), Expect = 5e-23
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 13 ANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVN 72
N T + ++ + Y +++ GN +V VL + ++T TNY +V+
Sbjct: 20 LNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVS 79
Query: 73 LSLADAMVSTLNVTFNFVYMLSSD-WPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
L++AD +V+TL + + ++ W F R C V + V+ AS++ L AIS+D
Sbjct: 80 LAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISID 136
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 92.0 bits (228), Expect = 5e-23
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 16 TVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSL 75
+ + +LY+ + VV GN +V+++++ + +M+T TN ++ NL+L
Sbjct: 2 SHSLCPQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLAL 61
Query: 76 ADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
ADA+ T + F V L WPFG CK+ + ++ S+FTL +SVD
Sbjct: 62 ADALA-TSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVD 113
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 91.7 bits (227), Expect = 5e-23
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 18 ESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLAD 77
+ P ++ ++ + V+A GN++V W V + ++ VTNYF+V+L+ AD
Sbjct: 18 YKDDDDGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAAD 77
Query: 78 AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
V L + F + C ++ +S+F+L+AI++D
Sbjct: 78 IAVGVLAIPFAITISTG--FCAACHGCLFIACFVLVLTQSSIFSLLAIAID 126
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 91.7 bits (227), Expect = 6e-23
Identities = 27/102 (26%), Positives = 57/102 (55%)
Query: 27 PWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVT 86
+ + + + + +V G NL+V++ V + +++ TV N ++V+LS+AD +V + +
Sbjct: 4 ASPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMP 63
Query: 87 FNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
N +Y+L S W GR C + ++ AS+F++ + +D
Sbjct: 64 MNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCID 105
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 90.0 bits (223), Expect = 2e-22
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Query: 2 SLYENNLTWIMANDTVESSSNQFEQ-PWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHK 60
L +N W + V +F+Q P ++ GGN IVI++ K
Sbjct: 4 DLRDNETWWYNPSIVVHPHWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTK 63
Query: 61 RMRTVTNYFLVNLSLADAMVSTLN-VTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASV 119
++T N F++NL+ +D S +N + W FG CKV F+ + S+
Sbjct: 64 SLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSI 123
Query: 120 FTLMAISVD 128
T+ IS+D
Sbjct: 124 MTMAMISID 132
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 87.5 bits (217), Expect = 6e-22
Identities = 31/98 (31%), Positives = 58/98 (59%)
Query: 31 QVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVSTLNVTFNFV 90
+ + L A +V++ GN++VI + + +R++T+TN F+ +L+ AD +V L V F
Sbjct: 11 EAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGAT 70
Query: 91 YMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
++ W +G F C++ + VL + AS+ TL I++D
Sbjct: 71 LVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAID 108
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 88.4 bits (218), Expect = 1e-21
Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 7 NLTWIMANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVT 66
N I+ + N + + ++ + N+ V+ + K+
Sbjct: 39 NYDIIVRHYNYTGKLNISADKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPM 98
Query: 67 NYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAIS 126
YF+ NL+L+D + T N + ++ + + + +++ ASVF+L+AI+
Sbjct: 99 YYFIGNLALSDLLAGVA-YTANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIA 157
Query: 127 VD 128
++
Sbjct: 158 IE 159
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 83.8 bits (207), Expect = 4e-20
Identities = 28/115 (24%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 14 NDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNL 73
D+++ + E + ++ ++Y+ + + GN +VI ++ K++R++T+ + ++L
Sbjct: 31 YDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHL 90
Query: 74 SLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVD 128
S+AD + + + F V + ++W FG F CK + +++ +SV+ L IS+D
Sbjct: 91 SVADLLF-VITLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLD 143
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura
genomics, JCSG, protein structure initiative, PSI, joint
CE structural genomics; 2.32A {Escherichia coli} SCOP:
c.77.1.5
Length = 355
Score = 28.7 bits (65), Expect = 0.50
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 58 AHKRMRTVTNYF---LVNLSLADAMVS 81
A +++ F +V+ AD ++
Sbjct: 108 ALEKLTDP-LMFAAAMVSAGKADVCIA 133
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.52
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 10/27 (37%)
Query: 30 KQV---MWTSL--YAP-----MVVVAT 46
KQ + SL YA + + AT
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKAT 45
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure
funded by NIH, protein structure initiative, PSI; 2.75A
{Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Length = 329
Score = 28.7 bits (65), Expect = 0.53
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 58 AHKRMRTVTNYF---LVNLSLADAMVS 81
A K + NYF LV LAD +VS
Sbjct: 104 ARKALLDE-NYFGTMLVYKGLADGLVS 129
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like
nucleotide-binding fold, structural genomics, BSGC
structure funded by NIH; 2.70A {Streptococcus pyogenes}
SCOP: c.77.1.5
Length = 337
Score = 28.7 bits (65), Expect = 0.56
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 58 AHKRMRTVTNYF---LVNLSLADAMVS 81
A K +R V NYF LV + LAD MVS
Sbjct: 106 ADKMLRDV-NYFGVMLVKMGLADGMVS 131
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for
structural genomics of infectious diseases, csgid; HET:
TRS; 1.44A {Staphylococcus aureus subsp}
Length = 331
Score = 28.7 bits (65), Expect = 0.60
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 58 AHKRMRTVTNYF---LVNLSLADAMVS 81
A + + V NYF LV AD +VS
Sbjct: 101 AQELLNNV-NYFGTMLVYAGKADGLVS 126
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound
PER monomer, acyltransferase; HET: COA; 2.15A
{Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A*
2af3_C*
Length = 333
Score = 28.7 bits (65), Expect = 0.60
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 4/27 (14%)
Query: 58 AHKRMRTVTNYF---LVNLSLADAMVS 81
A + M YF + L D +VS
Sbjct: 97 AAEIMSDY-VYFAVMMAKLGEVDGVVS 122
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 27.9 bits (63), Expect = 1.1
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 18 ESSSNQFEQPWWKQVMWTSLYAPMV-VVATGGNLIVIWI 55
+ SN Q K V S+ P++ ++A+ V+++
Sbjct: 231 DKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFL 269
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 27.5 bits (62), Expect = 1.3
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 18 ESSSNQFEQPWWKQVMWTSLYAPMV-VVATGGNLIVIWI 55
+ SN+ K V +S+ P++ ++A+ V++
Sbjct: 231 DKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYA 269
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 26.4 bits (59), Expect = 3.7
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 18 ESSSNQFEQPWWKQVMWTSLYAPMV-VVATGGNLIVIWI 55
+ + F K W + + V G +IVI +
Sbjct: 227 DKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGV 265
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.132 0.421
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,936,036
Number of extensions: 97324
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 31
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.3 bits)