RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14146
         (133 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 57.7 bits (138), Expect = 2e-11
 Identities = 23/111 (20%), Positives = 52/111 (46%)

Query: 22  NQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVLAHKRMRTVTNYFLVNLSLADAMVS 81
             +    W+  M  +    ++++    N + +++ + HK++RT  NY L+NL++AD  + 
Sbjct: 28  QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV 87

Query: 82  TLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDSTYQ 132
               T      L   + FG   C +  F A L    ++++L+ ++++    
Sbjct: 88  FGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVV 138


>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 192

 Score = 26.8 bits (59), Expect = 0.73
 Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 7/55 (12%)

Query: 3   LYENNLTWIMANDTVESSSNQFEQPWWKQVMWTSLYAPMVVVATGGNLIVIWIVL 57
           L E  L WI      +   + F  P W+ V        + V       + IW  +
Sbjct: 144 LRERLLGWIQDQGGWDGLLSYFGTPTWQTVT-------IFVAGVLTASLTIWKKM 191


>d3cmba1 d.347.1.1 (A:1-264) Acetoacetate decarboxylase
           {Methanoculleus marisnigri [TaxId: 2198]}
          Length = 264

 Score = 25.3 bits (55), Expect = 2.5
 Identities = 6/28 (21%), Positives = 8/28 (28%)

Query: 85  VTFNFVYMLSSDWPFGRFYCKVTQFVAV 112
           V   F      +W  G  Y  +     V
Sbjct: 60  VQVAFNKFTEINWLHGGQYNLINVAAPV 87


>d1vnsa_ a.111.1.3 (A:) Chloroperoxidase {Curvularia inaequalis
           [TaxId: 38902]}
          Length = 574

 Score = 25.2 bits (54), Expect = 3.6
 Identities = 5/31 (16%), Positives = 13/31 (41%)

Query: 62  MRTVTNYFLVNLSLADAMVSTLNVTFNFVYM 92
                 + LV+++  DA + +    + F + 
Sbjct: 326 ADFARLFALVDVACTDAGIFSWKEKWEFEFW 356


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.132    0.421 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 476,694
Number of extensions: 18645
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 10
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.6 bits)