BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14147
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
KPY C ECGK+F + +L HQR H ++ Y+C C F +S L H++ H +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 87 KCKLCPKMFTNT 98
KC C K F+ +
Sbjct: 62 KCPECGKSFSRS 73
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDN 82
KPY C ECGK+F + L HQR H ++ Y+C C F + L H++ H N
Sbjct: 31 KPYKCPECGKSFSQSSDLQKHQR-THTGEKPYKCPECGKSFSRSDHLSRHQRTHQN 85
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGK+F + L+ HQR H N +
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQR-THQNKK 87
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFTNTV 99
++ Y+C C F +S+L H++ H +KC C K F+ +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSS 46
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
KPYAC ECGK+F + L HQR H ++ Y+C C F L H++ H +
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 87 KCKLCPKMFT 96
KC C K F+
Sbjct: 79 KCPECGKSFS 88
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
KPY C ECGK+F K LT HQR H ++ Y+C C F ++L H++ H +
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPY 106
Query: 87 KCKLCPKMFT 96
C C K F+
Sbjct: 107 ACPECGKSFS 116
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
KPYAC ECGK+F + L HQR H ++ Y+C C F +L H++ H +
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPY 162
Query: 87 KCKLCPKMFT 96
KC C K F+
Sbjct: 163 KCPECGKSFS 172
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
KPY C ECGK+F ++ +L HQR H ++ Y C C F + L H++ H +
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 87 KCKLCPKMFT 96
KC C K F+
Sbjct: 135 KCPECGKSFS 144
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KPY C ECGK+F ++ +L HQR H ++ Y+C C F +L VH++ H
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 43 SLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFTN 97
S ++ Q + ++ Y C C F + L H++ H +KC C K F++
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
KPY C ECGKAF + L HQR VH ++ Y+C C F NS LI H++ H + P
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
K + C+ CG+ F K ++L +H+R H ++R Y CD+C F L H+ H F
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 87 KCKLCPKMF 95
KC+ C K F
Sbjct: 75 KCQECGKGF 83
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNT 83
+PY C+ C KAFR++ L H R++H ++ ++C C F + +L VHK H T
Sbjct: 44 RPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
+PYAC E C + F + SLT H R +H + +QC +C+ F + L H + H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 85 RFKCKLCPKMFTNT 98
F C +C + F +
Sbjct: 62 PFACDICGRKFARS 75
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KP+ C C + F + LT H R H ++ + CD+C +F + H + H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
+PYAC E C + F +K +L H R +H + +QC +C+ F +SL H + H
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 85 RFKCKLCPKMF 95
F C +C + F
Sbjct: 62 PFACDICGRKF 72
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KP+ C C + F ++ SL H R H ++ + CD+C +F T + H + H
Sbjct: 33 KPFQCRICMRNFSQQASLNAHIR-THTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 55 DRRYQC--DLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFTNTVS 100
+R Y C + C RF ++L H + H F+C++C + F+ S
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQAS 49
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 PYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRFK 87
P+ CE CGK F +K L H R H + Y+C C +SSL H + H + FK
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 88 CKLCPKMFTNT 98
C++CP N+
Sbjct: 67 CQICPYASRNS 77
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH--DNT 83
VKPY C+ C A SL H R +H ++R ++C +C +S L VH + H D+
Sbjct: 34 VKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSG 92
Query: 84 P 84
P
Sbjct: 93 P 93
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNT 83
Y C+ECGK+F L+ H+R H ++ Y+CD C F+ S LI H + H +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 56 RRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMF 95
RRY+CD C F +S L H++ H +KC C K F
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLN 54
KPY C+ECGKAF ++ L H R VH
Sbjct: 45 KPYKCDECGKAFIQRSHLIGHHR-VHTG 71
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
+PYAC E C + F + LT H R +H + +QC +C+ F + L H + H
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 85 RFKCKLCPKMFTNT 98
F C +C + F +
Sbjct: 62 PFACDICGRKFARS 75
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KP+ C C + F + LT H R H ++ + CD+C +F + H + H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
+PYAC E C + F + LT H R +H + +QC +C+ F + L H + H
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 85 RFKCKLCPKMFTNT 98
F C +C + F +
Sbjct: 62 PFACDICGRKFARS 75
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KP+ C C + F + LT H R H ++ + CD+C +F + H + H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
+PYAC E C + F + LT H R +H + +QC +C+ F + L H + H
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 85 RFKCKLCPKMFTNT 98
F C +C + F +
Sbjct: 61 PFACDICGRKFARS 74
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KP+ C C + F + LT H R H ++ + CD+C +F + H + H
Sbjct: 32 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
+PYAC E C + F + LT H R +H + +QC +C+ F + L H + H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 85 RFKCKLCPKMFTNT 98
F C +C + F +
Sbjct: 62 PFACDICGRKFARS 75
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KP+ C C + F + LT H R H ++ + CD+C +F + H + H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
+PYAC E C + F + LT H R +H + +QC +C+ F + L H + H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 85 RFKCKLCPKMFTNT 98
F C +C + F +
Sbjct: 62 PFACDICGRKFARS 75
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KP+ C C + F + LT H R H ++ + CD+C +F + H + H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
+PYAC E C + F +K +L H R +H + +QC +C+ F ++ L H + H
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 85 RFKCKLCPKMF 95
F C +C + F
Sbjct: 62 PFACDICGRKF 72
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVT 69
KP+ C C + F + L H R H ++ + CD+C +F T
Sbjct: 33 KPFQCRICMRNFSQHTGLNQHIR-THTGEKPFACDICGRKFAT 74
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
+PYAC E C + F +LT H R +H + +QC +C+ F + L H + H
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 85 RFKCKLCPKMFTNT 98
F C +C + F +
Sbjct: 62 PFACDICGRKFARS 75
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KP+ C C + F + LT H R H ++ + CD+C +F + H + H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDN 82
KPY C+ C +FR K +L H+ VH ++ Y+C++C A+F ++L H + H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFT 96
D+ Y+CD C A F +L HK H ++C +C F
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFN 56
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDN 82
+PY C+ CGK F +K + H +H ++ ++C +C F +S+LI H ++H
Sbjct: 27 TRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKC 88
+ C+ CGK+F++ +L+ H +H + R Y C C RF S + H H KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 89 KLCPKMFTNT 98
++C K F+ +
Sbjct: 61 QVCGKAFSQS 70
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 12 QKDVVQSFPIILYCVKPYACEECGKAFRKKFSLTMHQR 49
QK ++ I KP+ C+ CGKAF + +L H R
Sbjct: 41 QKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 27 KPYACE--ECGKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRHDN 82
+P+ C C K + K L MH R H ++ YQCD C RF + L H++RH
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 83 TPRFKCKLCPKMFTNT 98
F+CK C + F+ +
Sbjct: 64 VKPFQCKTCQRKFSRS 79
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 27 KPYACE--ECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
KPY C+ +C + F + L HQR H + +QC C +F + L H + H
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
Query: 85 RFKCKL--CPKMFTNT 98
F C+ C K F +
Sbjct: 94 PFSCRWPSCQKKFARS 109
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRH 80
VKP+ C+ C + F + L H R H ++ + C C +F + L+ H H
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY CE+CGK + KF+L MHQ+ VH +R
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQK-VHTGER 39
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVH 76
++PY C CGK F+ K L H + +H + Y+C++C RF+ S H
Sbjct: 35 LRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
K Y C+ CGK+F K H +HL R Y C +C +F L+ H + H +
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 87 KCKLCPKMF 95
+C +C K F
Sbjct: 67 ECNICAKRF 75
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 30 ACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNT--PRFK 87
ACE CGK FR + L H+ H ++ Y C +C RF + H + HD + +
Sbjct: 9 ACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 88 CKLCPKMFT 96
C+ C K F+
Sbjct: 68 CQSCGKGFS 76
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH 52
KPY C+ CGK F + L H + VH
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR-HVHLNDRRYQCDLCLARFVTNSSLIVH-KQRHDN 82
KPY+C CG F++K ++ H R H + Y C C F L H KQ H
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY CE+CGK + ++ +L MHQR VH+ ++
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQR-VHMGEK 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGKAF +K +LT HQR +H ++
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQR-IHTGEK 39
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
VKPY C ECGKAFR K L +H R H ++
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMR-THTGEK 37
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 32 EEC---GKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRHDNTPRF 86
EEC GK+F+ K+ L H R VH ++ + C C F + +L +HK+ H F
Sbjct: 63 EECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 87 KCKL--CPKMFTNT 98
KC+ C + F N+
Sbjct: 122 KCEFEGCDRRFANS 135
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRR 57
KPY C ECGKAFR + +LT HQ +H ++R
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQV-IHTGEKR 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 19/21 (90%)
Query: 29 YACEECGKAFRKKFSLTMHQR 49
Y C+ECGK+FR+K SLT+H+R
Sbjct: 11 YECQECGKSFRQKGSLTLHER 31
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLA 65
KPY C+ CGK F + L H + VH ++R ++C + ++
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 34 CGKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRHDNTPRFKCKLC 91
CGK + K L H R H ++ Y CD C +F + L H ++H F+C+ C
Sbjct: 14 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 92 PKMFTNT 98
+ F+ +
Sbjct: 73 DRAFSRS 79
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 27 KPYACE--ECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KPY C+ CG F + LT H R H R +QC C F + L +H +RH
Sbjct: 35 KPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 34 CGKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRHDNTPRFKCKLC 91
CGK + K L H R H ++ Y CD C +F + L H ++H F+C+ C
Sbjct: 13 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 92 PKMFTNT 98
+ F+ +
Sbjct: 72 DRAFSRS 78
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 27 KPYACE--ECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KPY C+ CG F + LT H R H R +QC C F + L +H +RH
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 31 CEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
C CGK FR + L +H R H ++ Y+C+ C +SL H +RH
Sbjct: 7 CSYCGKFFRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 27 KPYACEECGKAFRKKFSLTMHQ 48
KPY C ECGKAFR + SL +HQ
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQ 32
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 26 VKPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
++PYAC E C + F + LT H R +H + +QC +C+ F + L H + H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
VKPY C ECGKAF SLT HQ +H ++
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQV-IHTGEK 39
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 22 ILYCVKPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC--DLCLARFVTNSSLIVHKQR 79
I YC P C K + K L H R H ++ Y+C + C RF + L H ++
Sbjct: 15 IHYCDYP----GCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 80 HDNTPRFKCKLCPKMFTNT 98
H F+C +C + F+ +
Sbjct: 70 HTGAKPFQCGVCNRSFSRS 88
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDN 82
KPY C E C F + LT H R H + +QC +C F + L +H +RH N
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQR 49
+KPY C ECGKAFR K L +H R
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTR 33
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 28 PYACEECGKAFRKKFSLTMHQRHVHLNDR 56
PY C ECGKAF +K+ L HQR H ++
Sbjct: 12 PYECHECGKAFSRKYQLISHQR-THAGEK 39
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 27 KPYACEECGKAFRKKFSLTMHQ 48
KPY C ECGKAFR +LT HQ
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQ 32
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGK F +K L+ HQR H ++
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQR-THTGEK 39
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 27 KPYACEE--CGKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVH 76
KPY CE C KAF HQ H N++ Y C L C R+ SSL H
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY C+ECGK+F ++ SL +H+R
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHER 31
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGK F K L +HQR +H ++
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQR-IHTGEK 37
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C+ECGKAF + L HQR VH ++
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQR-VHTGEK 39
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGKAF + L HQR VH ++
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQR-VHTGEK 39
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDR 56
Y C ECGKAF +K +L MHQR +H ++
Sbjct: 13 YECSECGKAFARKSTLIMHQR-IHTGEK 39
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRHDN 82
+R Y+C C F S+LI+H++ H
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTG 37
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGKAF + SL H R+ H ++
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEK 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLND 55
KPY C+ECGKAF + L++H+R VH +
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRR-VHTGE 36
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGK ++++ L HQR VH ++
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQR-VHTGEK 39
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLND 55
KPY C ECGKAF K L +H+R +H +
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHER-IHTGE 36
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGKAF + L HQR +H ++
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQR-IHTGEK 39
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDR 56
Y C ECGKAF +K +L+MHQR +H ++
Sbjct: 13 YECSECGKAFIQKSTLSMHQR-IHRGEK 39
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRH 80
+R Y+C C F+ S+L +H++ H
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIH 35
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGKAF S T HQR +H R
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQR-LHTGQR 39
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
+P+ C CGK +R L+ H+R HL R C C F S + H + H N P
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRR-AHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP 59
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY CEECGKAF L HQR +H ++
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQR-IHTGEK 39
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLN--DRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
KP+ C +CGK + +K +L H+ +N ++ + C +C F L +H H
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEM 93
Query: 85 RFKCKLCPKMF 95
+KC C + F
Sbjct: 94 PYKCSSCSQQF 104
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 31 CEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQR---HDNTPRFK 87
C C K F K+ L +H R H ++ ++C C + +L+ H+ R + + F
Sbjct: 10 CPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 88 CKLCPKMF 95
C +C + F
Sbjct: 69 CSVCQETF 76
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 59 QCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMF 95
+C C +F++ L VH ++H F+C C K +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCY 45
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 28 PYACEECGKAFRKKFSLTMHQR 49
PY C ECGKAF +K L HQR
Sbjct: 10 PYECSECGKAFNRKDQLISHQR 31
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLN 54
KPY C++CGKAF +K SL +H R VH
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIR-VHTG 36
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRHDNT 83
++ Y+CD C F SLIVH + H +
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C +CGKAF +K L +HQ+ H +R
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQ-SHTGER 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KP+ C ECGK++ ++ LT HQR VH ++
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQR-VHTGEK 39
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KP+ C CGK+FR K +L HQR +H ++
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQR-IHTGEK 39
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDRRYQC--DLCLARFVTNSSLIVHKQRHDNTPRF 86
+ C ECGKAF + L HQ VH ++ +QC + C RF + +L H + H +
Sbjct: 35 HVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 87 KCKL--CPKMFTNTVS 100
C C K F + +
Sbjct: 94 VCPFDGCNKKFAQSTN 109
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGKAF K L +H R H ++
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMR-THSGEK 39
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 27 KPYACEECGKAFRKKFSLTMHQ 48
KPY C +CGKAF + SLT HQ
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQ 32
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KP C ECGKAF K L MHQR H++D+
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQR-THVDDK 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGK FR L+ HQR +H ++
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQR-IHTGEK 39
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY C ECGKAF + L +HQR
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQR 33
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRHDN 82
++ Y+C C F+ NS LIVH++ H
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSG 37
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQR 79
+ CE C +AF ++ L H R H N++ Y C LC F LI H Q+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 60 CDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFT 96
C++C F L H + H N + C LC + FT
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLND 55
KPY C +CGK+F KK L +HQR +H +
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQR-IHTGE 38
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
K + C ECGKAF +K +L+MHQ+ +H ++
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQK-IHTGEK 39
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY C +CGKAF K L +HQR
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQR 31
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHL 53
KPYAC+ CGK ++ + L+ H H HL
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHL 32
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY C CGKAF + SL++HQR
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQR 33
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C+ECGK+FR L HQR VH ++
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQR-VHSGEK 39
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KP+ C+ECGKAFR+ L H R +H ++
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLR-IHTGEK 39
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 9/31 (29%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRR 57
KPY C ECGKAF RH HLN+ R
Sbjct: 11 KPYKCSECGKAF---------HRHTHLNEHR 32
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 28 PYACEECGKAFRKKFSLTMHQR 49
PY C +CGK+F ++ SL +HQR
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQR 32
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C+ C K+FR SLT+HQR +H ++
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQR-IHTGEK 39
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRHDN 82
++ Y+CD+C F SSL VH++ H
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTG 37
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 31 CEECGKAFRKKFSLTMHQR-HVH-LNDRRYQCDLCLARFVTNSSLIVHKQR 79
CE CG R+K SL HQR H + R+ C+ C RF S+ H+ +
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 59 QCDLCLARFVTNSSLIVHKQRHDNTP---RFKCKLCPKMF 95
QC++C +SL H+++H T RF C+ C K F
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRF 48
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY C EC KAF K +L +HQR
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQR 33
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRH 80
++ Y+C+ C F T S+L+VH++ H
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTH 35
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGKAF + +L HQ+ +H ++
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQK-IHTGEK 39
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KP C ECGK FR+ L+ HQR +H ++
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQR-IHSGEK 37
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY C ECGKAF K L +H+R
Sbjct: 11 KPYECNECGKAFIWKSLLIVHER 33
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRHDN 82
++ Y+C+ C F+ S LIVH++ H
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KP+ CEECGK F + L HQR VH ++
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQR-VHTGEK 39
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 27 KPYACEECGKAFRKKFSLTMH 47
KPY C ECGK+F + LT H
Sbjct: 11 KPYQCSECGKSFSGSYRLTQH 31
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
+PY C ECGKAF+ K SL H+R
Sbjct: 11 RPYECIECGKAFKTKSSLICHRR 33
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 56 RRYQCDLCLARFVTNSSLIVHKQRHDN 82
R Y+C C F T SSLI H++ H
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTG 37
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLND 55
KPY C ECGKAF +K H+R +H +
Sbjct: 9 KPYVCTECGKAFIRKSHFITHER-IHTGE 36
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVH-KQRHDNTPR 85
K Y C C K F T H+ H H +RRYQC C F+ + H K H P
Sbjct: 49 KKYPCRYCEKVFPLAEYRTKHEIH-HTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPS 107
Query: 86 FKCKL 90
KL
Sbjct: 108 GDSKL 112
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 29 YACEECGKAFRKKFSLTMHQRH--VHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
Y C C +++ LT +RH +H +++Y C C F H+ H R+
Sbjct: 23 YICIVCKRSY---VCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY 79
Query: 87 KCKLCPKMFTN 97
+C C K F N
Sbjct: 80 QCLACGKSFIN 90
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQR 49
VKPY C +C K F K L +HQR
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQR 33
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 56 RRYQCDLCLARFVTNSSLIVHKQRHDN 82
+ Y C C F S LIVH++ H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTG 37
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KP+ CEECGK F + L HQR VH ++
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQR-VHTGEK 39
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRH 80
++ +QC+ C RF NS L H++ H
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVH 35
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 28 PYACEECGKAFRKKFSLTMHQRHVHLNDR 56
P+ C ECGK F K +L +HQ+ +H +R
Sbjct: 12 PFICSECGKVFTHKTNLIIHQK-IHTGER 39
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGK F + LT H R +H ++
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWR-IHTGEK 39
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVH 76
Y CEECG +K L H R H + R Y C C F T +L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 27 KPYACEECGKAFRKKFSLTMHQ 48
KPY C ECGK FR+ L HQ
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQ 32
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C CGK+F KK L +HQ+ +H ++
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQ-IHTGEK 39
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRHDN 82
++ Y+C +C F S L VH+Q H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTG 37
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLN 54
KPY+C ECGKAF K L +H + VH
Sbjct: 9 KPYSCNECGKAFTFKSQLIVH-KGVHTG 35
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 54 NDRRYQCDLCLARFVTNSSLIVHKQRHDN 82
++ Y C+ C F S LIVHK H
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTG 35
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY C ECGK F + L HQR
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQR 33
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGK+F +K L H+R +H ++
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRR-IHTGEK 39
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY C +CGKAF K L +HQ
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQG 31
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C+ C KAF SLT HQR VH ++
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQR-VHSGEK 39
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRHDN 82
++ Y+CD+C F ++SL H++ H
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSG 37
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 29 YACEECGKAFRKKFSLTMHQR 49
Y C ECGKAF + F LT HQ+
Sbjct: 13 YNCNECGKAFTRIFHLTRHQK 33
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KP+ C ECGK+F L HQR +H ++
Sbjct: 11 KPFECAECGKSFSISSQLATHQR-IHTGEK 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C+ CGKAF L HQR +H ++
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQR-IHTGEK 39
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY C ECGKAF + +L HQ+
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQK 33
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KP+ C EC KAF K +L +HQR H ++
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQR-THTGEK 39
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRH 80
++ ++C C F T S+LIVH++ H
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTH 35
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 29 YAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQC--DLCLARFVTNSSLIVHKQRHDNTP 84
Y C E CGKAF+K L +HQ H Y+C + C RF S L H++ H P
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 19 FPIILYCVKPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQC--DLCLARFVTNSSLI 74
F I CV Y C E CGKAF+K L +HQ H Y+C + C RF S L
Sbjct: 97 FHNIKICV--YVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLK 153
Query: 75 VHKQRHDNTP 84
H++ H P
Sbjct: 154 RHEKVHAGYP 163
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 29 YAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQC--DLCLARFVTNSSLIVHKQRHDNTP 84
Y C E CGKAF+K L +HQ H Y+C + C RF S L H++ H P
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHK 77
+KP+ C C + F + LT H R H ++ + CD+C +F + H+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHR 51
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 58 YQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFTNT 98
+QC +C+ F + L H + H F C +C + F +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 44
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLND---RRYQCDLCLARFVTNSSLIVH 76
KPYAC C K FR+K L MH + H + + C C F +++ H
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C +CGK+F K L +HQ+ H +R
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQK-CHTGER 39
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C+ CGKAFR L H VH +R
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHS-VHSGER 39
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 51 VHLNDRRYQCDLCLARFVTNSSLIVH-KQRH-DNTPRFKCKLC 91
H ++ Y+C +C ARF + ++ +H Q+H +N +F C C
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHC 51
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 27 KPYACEECGKAFRKKFSLTMH--QRHVHLNDRRYQCDLCLARFVTNSSLIVH 76
KPY C C F + ++ MH Q+H N ++ C C S L VH
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTE-NVAKFHCPHCDTVIARKSDLGVH 64
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGK F + L H+R VH +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRR-VHTGGK 39
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRH 50
KPY CE CGK F + L H RH
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRH 24
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQR 49
V PY C +C K+F K L +HQR
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQR 33
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGK F + L H R +H ++
Sbjct: 11 KPYKCNECGKVFTQNSHLARH-RGIHTGEK 39
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGK F + L H R +H ++
Sbjct: 11 KPYKCNECGKVFTQNSHLARH-RGIHTGEK 39
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
+P+ C ECGK+F + L HQR +H ++
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQR-IHTGEK 39
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KP+ C +CGKAF L H+R +H ++
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRR-IHTGEK 39
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLND 55
KP+ C ECGK+F L +HQR +H +
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQR-IHTGE 38
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C ECGK F + L H R +H ++
Sbjct: 11 KPYKCNECGKVFTQNSHLVRH-RGIHTGEK 39
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KP+ C ECGK F ++ +L +H + +H ++
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHK-LHTGEK 39
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
+PY C CGKAF + +L HQ+ +H ++
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQK-IHTGEK 39
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C+ C KAF +K L HQ+ H ++
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQK-THTGEK 39
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
K Y C ECGK F + L+ HQ+ +H ++
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQK-IHTGEK 39
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 28 PYACEECGKAFRKKFSLTMHQR 49
PY C ECGK F +K L HQ+
Sbjct: 12 PYECCECGKVFSRKDQLVSHQK 33
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KP+ CEECGK F HQR
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQR 33
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDR 56
+ C EC K F + SLT+HQR +H ++
Sbjct: 13 FKCNECKKTFTQSSSLTVHQR-IHTGEK 39
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
K + C ECG+ F K L HQR +H ++
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQR-IHTGEK 39
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY CEECGK F + L H VH ++
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHM-VHTGEK 39
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KP+ C+ C K+FR++ +L H R +H ++
Sbjct: 11 KPFRCDTCDKSFRQRSALNSH-RMIHTGEK 39
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
+P+ C ECGK F ++ L H R
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLR 33
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KPY C+EC K F + L H+R VH +R
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKR-VHTGER 39
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY+C CGKAF L H R
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLR 33
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
K + C+ECGK F +L +HQR VH+ ++
Sbjct: 11 KSHTCDECGKNFCYISALRIHQR-VHMGEK 39
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 53 LNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFTNTV 99
+N Y C++C ARF T S+L H R D+ L M N +
Sbjct: 112 VNPSSYVCNVCNARFSTMSALSEH-LRSDHRDDASTLLATPMINNAI 157
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 53 LNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFTNTV 99
+N Y C++C ARF T S+L H R D+ L M N +
Sbjct: 94 VNPSSYVCNVCNARFSTMSALSEH-LRSDHRDDASTLLATPMINNAI 139
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLND 55
K + C CGKAF K L +HQR +H +
Sbjct: 9 KLHECNNCGKAFSFKSQLIIHQR-IHTGE 36
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 27 KPYACEECGKAFRKKFSLTMH-QRH 50
+PY C ECGK F + L H +RH
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 28 PYACEECGKAFRKKFSLTMHQ 48
P+ C ECGK F L+ HQ
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQ 32
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
K + CE C K F+ K SL H R +H N++
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLR-IHTNEK 36
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDR 56
Y C+ CGK F + L HQR VH ++
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQR-VHTGEK 39
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQR 49
++PY+C CGK F K + H R
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYR 24
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY+C EC + F L HQ+
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQK 31
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY CE CG FR +L H R
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLR 32
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 31 CEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVH 76
C CG++F K + H R +H + + C C A F ++ L H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHA-AQVFPCKYCPATFYSSPGLTRH 75
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 58 YQCDLCLARFVTNSSLIVHKQRHDN 82
Y+C LC FV S+L H++ H N
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDR 56
Y C+ECGK+F + L H+R +H ++
Sbjct: 13 YNCKECGKSFSRAPCLLKHER-LHSGEK 39
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 34 CGKAFRKKFSLTMHQRHVHLNDRRYQC--DLCLARFVTNSSLIVHKQRHDNTPRFKCKL 90
CG+ F + L H+++ H++ + + C C F L H + H +T + C+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQR 49
+KP+ C +C ++F + L +H++
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRK 32
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
KP C CGKAF + SL H R H ++
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQ-HTGEK 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,619,222
Number of Sequences: 62578
Number of extensions: 82261
Number of successful extensions: 597
Number of sequences better than 100.0: 170
Number of HSP's better than 100.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 308
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)