RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14147
(100 letters)
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 35.5 bits (81), Expect = 0.002
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 21/76 (27%)
Query: 27 KPYACE--ECGKAFRKKFSLTMHQRHVHLN------------------DRRYQCDLCLAR 66
KPY C C K ++ + L H H H N D+ Y+C++C R
Sbjct: 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKR 407
Query: 67 FVTNSSLIVH-KQRHD 81
+ + L H K HD
Sbjct: 408 YKNLNGLKYHRKHSHD 423
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 32.4 bits (73), Expect = 0.025
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLND---RRYQCD--LCLARFVTNSSLIVHKQRHD 81
P ++C +F + LT H R V+ + + + C LC F N +L H H
Sbjct: 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT 347
Query: 82 NTPRFKCKLCPKMFTNTVS 100
+ K KL +
Sbjct: 348 SISPAKEKLLNSSSKFSPL 366
Score = 25.4 bits (55), Expect = 6.8
Identities = 11/55 (20%), Positives = 17/55 (30%)
Query: 39 RKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPK 93
R H+ + C F + +LI HK+ H N C +
Sbjct: 400 RDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKS 454
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 29.1 bits (65), Expect = 0.21
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 58 YQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFTNT 98
Y C LCL F ++ SL H + +++ C +C K F NT
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNT 112
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 28.8 bits (65), Expect = 0.30
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 29 YACEECG-------KAFRKKFSLTMHQRHV 51
+ CE CG KAF K FS H +
Sbjct: 93 FKCEICGNTSYKGRKAFEKHFSEWRHAYGL 122
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 26.0 bits (58), Expect = 0.75
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 58 YQCDLCLARFVTNSSLIVHKQRH 80
+ C +C F + +L HK+ H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys.
The C2H2 zinc finger is composed of two short beta
strands followed by an alpha helix. The amino terminal
part of the helix binds the major groove in DNA binding
zinc fingers. The accepted consensus binding sequence
for Sp1 is usually defined by the asymmetric
hexanucleotide core GGGCGG but this sequence does not
include, among others, the GAG (=CTC) repeat that
constitutes a high-affinity site for Sp1 binding to the
wt1 promoter.
Length = 22
Score = 25.8 bits (57), Expect = 0.83
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 31 CEECGKAFRKKFSLTMHQR 49
C +CGK+F +K +L H R
Sbjct: 2 CPDCGKSFSRKSNLKRHLR 20
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 25.8 bits (57), Expect = 0.88
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 72 SLIVHKQRHDNTPRFKCKLCPKMFTN 97
+L H + H +KC +C K F++
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 23.5 bits (51), Expect = 6.7
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 43 SLTMHQRHVHLNDRRYQCDLCLARFVT 69
+L H R H ++ Y+C +C F +
Sbjct: 1 NLRRHMR-THTGEKPYKCPVCGKSFSS 26
>gnl|CDD|215056 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 27.8 bits (62), Expect = 0.95
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 25 CVKPYACEECGKAFRKKFSLTMHQR 49
C K Y CE C K ++K L H +
Sbjct: 195 CSKLYFCEFCLKFMKRKEQLQRHMK 219
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of
the virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA
plus-strand. lambda1 is an Orthoreovirus core protein,
VP3 is the homologous core protein in Aquareoviruses.
Length = 1166
Score = 27.0 bits (60), Expect = 1.8
Identities = 11/36 (30%), Positives = 11/36 (30%)
Query: 17 QSFPIILYCVKPYACEECGKAFRKKFSLTMHQRHVH 52
QS Y C C F L HQR H
Sbjct: 62 QSKKATPINPSSYVCNVCMAEFSSMDQLAEHQRTTH 97
Score = 26.3 bits (58), Expect = 3.6
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 51 VHLNDRRYQCDLCLARFVTNSSLIVH 76
+N Y C++C+A F + L H
Sbjct: 67 TPINPSSYVCNVCMAEFSSMDQLAEH 92
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 24.3 bits (53), Expect = 2.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 58 YQCDLCLARFVTNSSLIVHKQRH 80
Y+C C F + S+L H + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 23.6 bits (51), Expect = 5.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 29 YACEECGKAFRKKFSLTMHQR 49
Y C ECGK F+ K +L H R
Sbjct: 1 YRCPECGKVFKSKSALREHMR 21
>gnl|CDD|215642 PLN03238, PLN03238, probable histone acetyltransferase MYST;
Provisional.
Length = 290
Score = 26.0 bits (57), Expect = 4.2
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 25 CVKPYACEECGKAFRKKFSLTMHQRH 50
C K Y CE C K RKK SL H
Sbjct: 45 CTKLYICEYCLKYMRKKKSLLRHLAK 70
>gnl|CDD|227480 COG5151, SSL1, RNA polymerase II transcription
initiation/nucleotide excision repair factor TFIIH,
subunit SSL1 [Transcription / DNA replication,
recombination, and repair].
Length = 421
Score = 25.7 bits (56), Expect = 4.3
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
K C C F K + + RYQC+LC + F ++ + +H+ H
Sbjct: 361 KSTHCFVCQGPFPK---PPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHETLH 411
>gnl|CDD|225995 COG3464, COG3464, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 402
Score = 25.9 bits (57), Expect = 4.8
Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 24/90 (26%)
Query: 6 REVMEIQKDVVQSFPIILYCVKPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLA 65
E+ I D+ P + + C ECG+ +RH R+ DL L
Sbjct: 22 VEMGPIIIDLYAEMP------RKHRCPECGQR--------TIRRH-GWRIRKI-QDLPLF 65
Query: 66 RFVTNSSLIVHKQRHDNTPRFKCKLCPKMF 95
R+KC C K F
Sbjct: 66 EVPV--------YLFLRKRRYKCCRCGKRF 87
>gnl|CDD|221488 pfam12251, zf-SNAP50_C, snRNA-activating protein of 50kDa MW C
terminal. This domain family is found in eukaryotes,
and is typically between 196 and 207 amino acids in
length. There is a conserved CEH sequence motif. SNAP50
is part of the snRNA-activating protein complex which
activates RNA polymerases II and III. There is a
cysteine-histidine cluster which contains two possible
zinc finger motifs.
Length = 197
Score = 25.3 bits (56), Expect = 5.4
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 48 QRHVHLNDRRYQCDLC---LARFVTNSSLIVHKQRHDNTPRFKCKLCPKMF 95
R N RR +C +C A ++ + L P + C C ++F
Sbjct: 131 LRTFKPNIRRRKCLVCGLNQATWIVYNDL-----LLPEDPSYLCDSCFELF 176
>gnl|CDD|236920 PRK11511, PRK11511, DNA-binding transcriptional activator MarA;
Provisional.
Length = 127
Score = 25.1 bits (54), Expect = 5.8
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 3 VRSREVMEIQKDVVQSFPIILYCVKPYACEE---CGKAFRKKFSLTMHQRHV 51
+RSR++ EI + + +S ILY + Y E + F+ F + H+ +
Sbjct: 58 IRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKYRM 109
>gnl|CDD|177288 PHA00616, PHA00616, hypothetical protein.
Length = 44
Score = 23.6 bits (51), Expect = 6.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDR 56
Y C CG FRKK + H VH ++
Sbjct: 2 YQCLRCGGIFRKKKEVIEHLLSVHKQNK 29
>gnl|CDD|235290 PRK04351, PRK04351, hypothetical protein; Provisional.
Length = 149
Score = 24.8 bits (55), Expect = 6.9
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARF 67
Y C+ CG+ + +K R + N +RY+C C +
Sbjct: 113 YECQSCGQQYLRK-------RRI--NTKRYRCGKCRGKL 142
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 23.9 bits (51), Expect = 6.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
Y C CG+ + K+ S+ H R + N + C
Sbjct: 6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNC 37
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.138 0.440
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,649,655
Number of extensions: 351107
Number of successful extensions: 473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 470
Number of HSP's successfully gapped: 49
Length of query: 100
Length of database: 10,937,602
Length adjustment: 66
Effective length of query: 34
Effective length of database: 8,010,238
Effective search space: 272348092
Effective search space used: 272348092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.1 bits)