RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14147
(100 letters)
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 65.9 bits (162), Expect = 6e-16
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
P+ CE CGK F +K L H R H + Y+C C +SSL H + H + F
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 87 KCKLCPKMFTN 97
KC++CP N
Sbjct: 66 KCQICPYASRN 76
Score = 59.7 bits (146), Expect = 2e-13
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KPY C+ C A SL H R +H ++R ++C +C +S L VH + H
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 49.0 bits (118), Expect = 3e-09
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
+P+ C+ C A R LT+H R H D
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLR-SHTGDSGPSS 95
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 65.1 bits (160), Expect = 1e-15
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
K + C+ CG+ F K ++L +H+R H ++R Y CD+C F L H+ H F
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 87 KCKLCPKMFT 96
KC+ C K F
Sbjct: 75 KCQECGKGFC 84
Score = 59.0 bits (144), Expect = 4e-13
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
+PY C+ C KAFR++ L H+ +H ++ ++C C F + +L VHK H
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 47.8 bits (115), Expect = 9e-09
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KP+ C+ECGK F + +L +H+ +H+
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKT-LHMQTSSPTA 104
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 63.7 bits (156), Expect = 4e-15
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPR- 85
ACE CGK FR + L H+ H ++ Y C +C RF + H + HD +
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 86 -FKCKLCPKMFT 96
+ C+ C K F+
Sbjct: 65 PYICQSCGKGFS 76
Score = 57.5 bits (140), Expect = 1e-12
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR-HVHLNDRRYQCDLCLARFVTNSSLIVHKQR 79
KPY+C CG F++K ++ H R H + Y C C F L H ++
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 44.4 bits (106), Expect = 1e-07
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH 52
KPY C+ CGK F + L H + VH
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVH 89
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 62.9 bits (154), Expect = 7e-15
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPR 85
+KP+ C C + F + LT H R H ++ + CD+C +F + H+ P
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQHILP- 58
Query: 86 FKCKLCPKMFT 96
++ +
Sbjct: 59 ILEDKVEELLS 69
Score = 50.6 bits (122), Expect = 4e-10
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KP+AC+ CG+ F + H+ + + D N L R
Sbjct: 30 KPFACDICGRKFARSDERKRHRD-IQ-HILPILEDKVEELLSKNYHLENEVARL 81
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 62.1 bits (152), Expect = 9e-15
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KPY C ECGKAF + L HQR VH ++ Y+C C F NS LI H++ H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 62.9 bits (154), Expect = 1e-14
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNT--- 83
C C K F K+ L +H R H ++ ++C C + +L+ H + +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEH-EARNCMNRS 63
Query: 84 --PRFKCKLCPKMFT 96
F C +C + F
Sbjct: 64 EQV-FTCSVCQETFR 77
Score = 61.0 bits (149), Expect = 8e-14
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRH--VHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
KP+ C +CGK + +K +L H+ ++ +++ + C +C F L +H H
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEM 93
Query: 85 RFKCKLCPKMFT 96
+KC C + F
Sbjct: 94 PYKCSSCSQQFM 105
Score = 57.9 bits (141), Expect = 2e-12
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQR 79
+ + C C + FR++ L +H H + Y+C C +F+ L H +
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMV-SHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Score = 44.4 bits (106), Expect = 2e-07
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH 52
PY C C + F +K L H +H
Sbjct: 93 MPYKCSSCSQQFMQKKDLQSHMIKLH 118
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 61.7 bits (150), Expect = 2e-14
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR-H-VHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
CE CG R+K SL HQR H + R+ C+ C RF S+ H+ +
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 85 RFKCKLCPK 93
+
Sbjct: 66 LLAPQESSG 74
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 60.6 bits (148), Expect = 6e-14
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH----LNDRRYQCDLCLARFVTNSSLIVHKQRHDN 82
KPYAC C K FR+K L MH + + + C C F +++ H
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAG 72
Query: 83 TPRFKCKLCPKMF 95
+ +
Sbjct: 73 PDGVEGENSGPSS 85
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 59.8 bits (146), Expect = 8e-14
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
P C EC + K +L +H+R +H DR ++C+ C S+L H ++
Sbjct: 8 HPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 62.1 bits (152), Expect = 1e-13
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
KPY C ECGK+F ++ +L HQR H ++ Y C C F + L H++ H +
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 87 KCKLCPKMFT 96
KC C K F+
Sbjct: 135 KCPECGKSFS 144
Score = 62.1 bits (152), Expect = 1e-13
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
KPYAC ECGK+F + L HQR H ++ Y+C C F +L H++ H +
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPY 162
Query: 87 KCKLCPKMFT 96
KC C K F+
Sbjct: 163 KCPECGKSFS 172
Score = 62.1 bits (152), Expect = 1e-13
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNT--- 83
KPYAC ECGK+F + L HQR H ++ Y+C C F L H++ H T
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTH--TGEK 76
Query: 84 PRFKCKLCPKMFT 96
P +KC C K F+
Sbjct: 77 P-YKCPECGKSFS 88
Score = 57.1 bits (139), Expect = 1e-11
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KPY C ECGK+F ++ +L HQR H ++ Y+C C F +L VH++ H
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 35.5 bits (83), Expect = 8e-04
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 37 AFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFT 96
+ S + ++ Y C C F + L H++ H +KC C K F+
Sbjct: 2 SEFGSSSSVAQAA-LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 60.1 bits (147), Expect = 1e-13
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
+PY C CGK F+ K L H + +H + Y+C++C RF+ S H+ T +
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSY 92
Query: 87 KCKLCPKMFT 96
+ + T
Sbjct: 93 EAAKAEQNTT 102
Score = 60.1 bits (147), Expect = 2e-13
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
K Y C+ CGK+F K H +HL R Y C +C +F L+ H + H +
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 87 KCKLCPKMFT 96
+C +C K F
Sbjct: 67 ECNICAKRFM 76
Score = 35.1 bits (82), Expect = 6e-04
Identities = 2/19 (10%), Positives = 6/19 (31%)
Query: 27 KPYACEECGKAFRKKFSLT 45
K Y + + + +
Sbjct: 90 KSYEAAKAEQNTTEASGPS 108
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 58.7 bits (143), Expect = 1e-13
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQR 79
+ + CE C +AF ++ L H R H N++ Y C LC F LI H Q+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 40.5 bits (96), Expect = 2e-06
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH 52
KPY C C +AF ++ L H + +H
Sbjct: 29 KPYPCGLCNRAFTRRDLLIRHAQKIH 54
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 59.0 bits (144), Expect = 2e-13
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KPY C+ C +FR K +L H+ VH ++ Y+C++C A+F ++L H + H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 59.0 bits (144), Expect = 2e-13
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
+ Y C+ECGK+F L+ H+R H ++ Y+CD C F+ S LI H + H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 59.0 bits (144), Expect = 2e-13
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
+PY C+ CGK F +K + H +H ++ ++C +C F +S+LI H ++H
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 57.4 bits (140), Expect = 1e-12
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKC 88
+ C+ CGK+F++ +L+ H +H + R Y C C RF S + H H KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 89 KLCPKMFT 96
++C K F+
Sbjct: 61 QVCGKAFS 68
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 57.9 bits (141), Expect = 4e-13
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCD--LCLARFVTNSSLIVHKQRHDN 82
C CG+ F + L H+++ H++ + + C C F L H + H +
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 83 TPRFKCKLCPKMF 95
T + C+
Sbjct: 66 TRDYICEFSGPSS 78
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 56.8 bits (138), Expect = 2e-12
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRHDNTP 84
CGK + K L H R H ++ Y CD C +F + L H ++H
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 64
Query: 85 RFKCKLCPKMFT 96
F+C+ C + F+
Sbjct: 65 PFQCQKCDRAFS 76
Score = 49.8 bits (120), Expect = 1e-09
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KPY C + CG F + LT H R H R +QC C F + L +H +RH
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 35.2 bits (82), Expect = 5e-04
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHL 53
+P+ C++C +AF + L +H + H
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMK-RHF 89
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 56.4 bits (137), Expect = 2e-12
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR-HVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KPY C C F + ++ MH N ++ C C S L VH ++
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Score = 45.2 bits (108), Expect = 4e-08
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLNDRRY 58
V + C C +K L +H R H
Sbjct: 43 VAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 43.7 bits (104), Expect = 2e-07
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 43 SLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH--DNTPRFKCKLCPKMFT 96
S R H ++ Y+C +C ARF + ++ +H + +N +F C C +
Sbjct: 2 SSGSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA 56
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 55.3 bits (134), Expect = 4e-12
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR-HVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
Y C+ C + + + H N + Y C C F ++ H +
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 39.1 bits (92), Expect = 8e-06
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVH 52
VK Y C C K F +K ++T H + +H
Sbjct: 38 VKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 30.2 bits (69), Expect = 0.021
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 48 QRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNT---PRFKCKLCPKMFT 96
+ + Y+C +C + S+ H + C C K FT
Sbjct: 2 EF-TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFT 51
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 53.7 bits (130), Expect = 1e-11
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARF 67
KPY C+ CGK F + L H + VH ++R ++C + ++
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 54.0 bits (129), Expect = 4e-11
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHV-HLNDRRYQCDLCLAR---FVTNSSLIVHKQRHDN 82
+ C++C A+ LT+H H D ++ D + SL+ + + D
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 83 TPRFKCKLCPKMF 95
KC C F
Sbjct: 78 QKVLKCMYCGHSF 90
Score = 30.1 bits (67), Expect = 0.047
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMH-QRHVHLNDRRYQ 59
K C CG +F L++H + H
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 27.0 bits (59), Expect = 0.71
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 43 SLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQR--HDNTPRFKCKLC 91
S ++ + +++C C A + T L VH H +
Sbjct: 6 SGKLYGS-IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNN 55
Score = 25.5 bits (55), Expect = 2.9
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 69 TNSSLIVHKQRHDNTPRFKCKLCPKMFTNTVS 100
+ SS ++ +F+CK C + V
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVE 34
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 53.2 bits (129), Expect = 4e-11
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
KP+ C C + F + LT H R H ++ + CD+C +F + H + H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 52.5 bits (127), Expect = 9e-11
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
+PYAC E C + F + SLT H R +H + +QC +C+ F + L H + H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 85 RFKCKLCPKMFT 96
F C +C + F
Sbjct: 62 PFACDICGRKFA 73
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 54.1 bits (131), Expect = 4e-11
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 27 KPYACEE--CGKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRHDN 82
+P+ C C K + K L MH R H ++ YQCD C RF + L H++RH
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 83 TPRFKCKLCPKMFT 96
F+CK C + F+
Sbjct: 64 VKPFQCKTCQRKFS 77
Score = 53.7 bits (130), Expect = 5e-11
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 27 KPYACE--ECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
KPY C+ +C + F + L HQR H + +QC C +F + L H + H
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
Query: 85 RFKCKL--CPKMFT 96
F C+ C K F
Sbjct: 94 PFSCRWPSCQKKFA 107
Score = 52.9 bits (128), Expect = 1e-10
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRH 80
KP+ C+ C + F + L H R H ++ + C C +F + L+ H H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 51.8 bits (125), Expect = 5e-11
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGKAF + SL H R+ H ++
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 52.2 bits (126), Expect = 9e-11
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 31 CEECGKAFRKKFSLTMHQRHVHLNDRRYQCD--LCLARFVTNSSLIVHKQRHDNTPRFKC 88
E CGKAF+K L +HQ H Y+C C RF S L H++ H P K
Sbjct: 6 FENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 89 KLCPKMF 95
C +
Sbjct: 65 DSCSFVG 71
Score = 44.9 bits (107), Expect = 6e-08
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQR 79
PY C E C K F L H++ VH + D C T + + H
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83
Score = 30.7 bits (70), Expect = 0.019
Identities = 3/26 (11%), Positives = 5/26 (19%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH 52
+ C + H H
Sbjct: 60 PCKKDDSCSFVGKTWTLYLKHVAECH 85
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 2e-10
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY CE+CGK + ++ +L MHQR VH+ ++
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGP 43
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 52.5 bits (127), Expect = 2e-10
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRHDNTP 84
+ + C ECGKAF + L HQ VH ++ +QC C RF + +L H + H
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 91
Query: 85 RFKCKL--CPKMFT 96
+ C C K F
Sbjct: 92 PYVCPFDGCNKKFA 105
Score = 47.5 bits (114), Expect = 2e-08
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTP 84
+ AC + C K FR ++ H H R + C C FV +S L H+ H
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLH-TH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 85 RFKCKL--CPKMFT 96
F+C C K F+
Sbjct: 62 PFQCTFEGCGKRFS 75
Score = 37.5 bits (88), Expect = 1e-04
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQR 49
+PY C + C K F + +L H
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHIL 115
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 2e-10
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY CE+CGK + KF+L MHQ+ VH +R
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-10
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGK+F + LT H H ++
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWI-THTREKPSGP 43
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 53.4 bits (129), Expect = 3e-10
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQC--DLCLARFVTNSSLIVHKQRHDN 82
Y C E CGKAF+K L +HQ H Y+C + C RF S L H++ H
Sbjct: 103 CVYVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Query: 83 TPRFKCKLCPKMF 95
P K C +
Sbjct: 162 YPCKKDDSCSFVG 174
Score = 51.1 bits (123), Expect = 2e-09
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 27 KPYACE--ECGKAFRKKFSLTMHQRHVHLNDRRYQCD--LCLARFVTNSSLIVHKQRHDN 82
K Y C +CG A+ K + L H H ++ + C C F + L H H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 69
Query: 83 TPRFKCK--LCPKMFT 96
F C C FT
Sbjct: 70 EKNFTCDSDGCDLRFT 85
Score = 50.3 bits (121), Expect = 4e-09
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 27 KPYACEE--CGKAFRKKFSLTMHQR-HVHLNDRRYQCDL--CLARFVTNSSLIVHKQRHD 81
K + C+ C F K ++ H ++ Y C C F ++ L VH+ H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 82 NTPRFKCK--LCPKMFT 96
++C C K F+
Sbjct: 131 QQLPYECPHEGCDKRFS 147
Score = 47.6 bits (114), Expect = 3e-08
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQR 79
PY C E C K F L H++ VH + D C T + + H
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLYLKHVAE 186
Score = 31.8 bits (73), Expect = 0.019
Identities = 3/26 (11%), Positives = 5/26 (19%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH 52
+ C + H H
Sbjct: 163 PCKKDDSCSFVGKTWTLYLKHVAECH 188
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 3e-10
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCD 61
KPY C ECGK ++++ L HQR VH ++
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGPS 44
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 51.1 bits (123), Expect = 4e-10
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDN 82
KPY C E C F + LT H R H + +QC +C F + L +H +RH N
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 49.5 bits (119), Expect = 2e-09
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 27 KPYACE--ECGKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRHDN 82
+ + C+ C K + K L H R H ++ Y+C C RF + L H ++H
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 83 TPRFKCKLCPKMFT 96
F+C +C + F+
Sbjct: 73 AKPFQCGVCNRSFS 86
Score = 34.1 bits (79), Expect = 0.002
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLN 54
KP+ C C ++F + L +H + H N
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMK-RHQN 100
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 4e-10
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGKAF SLT HQ +H ++
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGP 43
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 49.5 bits (119), Expect = 4e-10
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
+ Y C+ECGK+FR+K SLT+H+R
Sbjct: 9 RVYECQECGKSFRQKGSLTLHER 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 5e-10
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGKAFR +LT HQ +H ++
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 49.5 bits (119), Expect = 5e-10
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C+ECGK+FR L HQR VH ++
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 6e-10
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C+ C K+FR SLT+HQR +H ++
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 6e-10
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KP C ECGKAF K L MHQR H++D+
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQR-THVDDKHSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 48.6 bits (117), Expect = 8e-10
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
PY C ECGK F +K L HQ+ H
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQK-THSGQSGPSS 43
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 51.4 bits (124), Expect = 9e-10
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR--HVHLNDRRYQCDLCLAR-----FVTNSSLIVHKQR 79
+ C + F + L H H+H + + C F L+VH +R
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 80 HDNTPRFKCKL--CPKMFT 96
H KC C K ++
Sbjct: 62 HTGEKPHKCTFEGCRKSYS 80
Score = 50.3 bits (121), Expect = 2e-09
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 27 KPYACEE--CGKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRH 80
KPY CE C KAF HQ H N++ Y C L C R+ SSL H +
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 49.1 bits (118), Expect = 7e-09
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQC--DLCLARFVTNSSLIVHKQR-HD 81
KP+ C E C K++ + +L H R H ++ Y C + C F S H+ R H
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 82 NTPRFKCKL--CPKMFT 96
N + CKL C K +T
Sbjct: 125 NEKPYVCKLPGCTKRYT 141
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 48.7 bits (117), Expect = 1e-09
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
PY C ECGKAF +K L HQR H +
Sbjct: 9 NPYECSECGKAFNRKDQLISHQR-THAGESGPSS 41
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-09
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C +CGKAF +K L +HQ+ H +R
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-09
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
K + C ECGKAF +K +L+MHQ+ +H ++
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-09
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
+ Y C ECGKAF +K +L+MHQR +H ++
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-09
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY CEECGKAF L HQR +H ++
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-09
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C +CGKAF + SLT HQ +H +
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQA-IHTGKKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-09
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGK FR L+ HQR +H ++
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-09
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGKAFR + SL +HQ H ++
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQA-THSGEKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 48.3 bits (116), Expect = 1e-09
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
+PY C ECGKAF+ K SL H+R H ++
Sbjct: 11 RPYECIECGKAFKTKSSLICHRR-SHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 48.3 bits (116), Expect = 1e-09
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KP+ C CGK+FR K +L HQR +H ++
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPS 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-09
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C +CGK+F KK L +HQR +H +
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-09
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
+ Y C ECGKAF +K +L MHQR +H ++
Sbjct: 11 RHYECSECGKAFARKSTLIMHQR-IHTGEKPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-09
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCD 61
KPY+C CGKAF L H R VH +
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLR-VHTQETLSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-09
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGKAF S T HQR +H R
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 48.3 bits (116), Expect = 1e-09
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
K + C EC F + SL +HQ VH+ ++
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGP 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 48.4 bits (116), Expect = 1e-09
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCD 61
K + C+ECGK F +L +HQR VH+ ++
Sbjct: 11 KSHTCDECGKNFCYISALRIHQR-VHMGEKCSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 48.3 bits (116), Expect = 1e-09
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGKAFR K L +H R H +
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTR-THTGESGPSS 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 48.2 bits (116), Expect = 1e-09
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C EC KAF K +L +HQR H +
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQR-THTGESGPSS 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 2e-09
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C CGKAF + SL++HQR +H +
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 2e-09
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGKAF + +L HQ+ +H ++
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQK-IHTGEKPSGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 48.3 bits (116), Expect = 2e-09
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KP+ C C KAF K L +HQ+ H ++
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGP 41
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 48.3 bits (116), Expect = 2e-09
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
PY C +C K+F K L +HQR +H ++
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 48.3 bits (116), Expect = 2e-09
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY CEECGK F + L H VH ++
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 2e-09
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C+ C KAF SLT HQR VH ++
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-09
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
PY C ECGKAF +K+ L HQR H ++
Sbjct: 11 NPYECHECGKAFSRKYQLISHQR-THAGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-09
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGKAF +K +LT HQR +H ++
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQR-IHTGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-09
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C+ CGKAFR L H VH +R
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-09
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C +CGK+F K L +HQ+ H +R
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-09
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C+EC K F + L H+R VH +R
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKR-VHTGERSSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-09
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGK F +K L+ HQR H ++
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQR-THTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-09
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C+ CGKAF L HQR +H ++
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-09
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
P+ C ECGK F K +L +HQ+ +H +R
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQK-IHTGERPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-09
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
K + C EC K F + SLT+HQR +H ++
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-09
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KP+ C +CGKAF L H+R +H ++
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-09
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
+PY C ECGK F + L H + H ++
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-09
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C CGK+F KK L +HQ+ +H ++
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 47.5 bits (114), Expect = 3e-09
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KP+ C ECGK+F L HQR +H ++
Sbjct: 11 KPFECAECGKSFSISSQLATHQR-IHTGEKPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-09
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
K Y C+ECGK+F + L H+R +H ++
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-09
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCD 61
KP+ C+ CGK+F + L H VH ++
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-09
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KP+ C EC KAF K +L +HQR H ++
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQR-THTGEKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 3e-09
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGKAF + L H+R +H R
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 47.1 bits (113), Expect = 3e-09
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C +C K F K L +HQR H +
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 4e-09
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGKAF + +L HQ+ +H +
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 4e-09
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGKAF + L HQR VH ++
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.2 bits (113), Expect = 4e-09
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGKAF K L +H R H ++
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 4e-09
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KP+ C ECGK+F L +HQR +H +
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQR-IHTGENPSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 4e-09
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
+P+ C ECGK F ++ L H R +H ++
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 47.1 bits (113), Expect = 5e-09
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C+ECGKAF + L HQR VH ++
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 5e-09
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
+PY C CGKAF + +L HQ+ +H ++
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 5e-09
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KP+ C+ECGKAFR+ L H R +H ++
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 46.7 bits (112), Expect = 5e-09
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KP+ C ECGK F ++ +L +H + +H ++
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 5e-09
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGKAF + L HQR +H ++
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 5e-09
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C+ C KAF +K L HQ+ H ++
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 46.8 bits (112), Expect = 5e-09
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
+ + C +CGK F + + H+R +H ++
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRR-IHTGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 6e-09
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KP+ C ECGK++ ++ LT HQR VH ++
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 6e-09
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGK FR+ L HQ +H ++
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 6e-09
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGK F + LT H R +H ++
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 6e-09
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGK+F +K L H+R +H ++
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 6e-09
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KP+ CEECGK F + L HQR VH ++
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.12
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 47 HQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
++ +QC+ C RF NS L H++ H
Sbjct: 3 SGS-SGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 7e-09
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
K Y C+ CGK F + L HQR VH ++
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.031
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 47 HQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
+ ++ Y+CD+C F +S L H++ H
Sbjct: 3 SGS-SGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 7e-09
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCD 61
KP+ CEECGK F HQR H ++
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.015
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 47 HQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
++ ++C+ C F TNS H++ H
Sbjct: 3 SGS-SGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 8e-09
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KP+ CEECGK F + L HQR VH ++
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 46.4 bits (111), Expect = 9e-09
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
K Y C ECGK F + L+ HQ+ +H ++
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 1e-08
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
+P+ C ECGK+F + L HQR +H ++
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGP 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 46.1 bits (110), Expect = 1e-08
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
PY C +CGK+F ++ SL +HQR
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQR 32
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 45.6 bits (109), Expect = 1e-08
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGKAF K L +H+R H
Sbjct: 11 KPYECNECGKAFIWKSLLIVHER-THAGVSGPSS 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 1e-08
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGK F + L H+ +H ++
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 1e-08
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGK F + L HQR +H +
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.6 bits (109), Expect = 2e-08
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH 52
K + C ECG+ F K L HQR +H
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQR-IH 35
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 48.1 bits (115), Expect = 2e-08
Identities = 15/80 (18%), Positives = 21/80 (26%), Gaps = 10/80 (12%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH--------LNDRRYQCDLCLARFVTNSSLIVHKQ 78
+ C + F L H H +C F L+ H +
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 79 RHDNTPRFKCKL--CPKMFT 96
H F C C K+F
Sbjct: 84 VHTGEKPFPCPFPGCGKIFA 103
Score = 46.5 bits (111), Expect = 6e-08
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 24 YCVKPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRHD 81
+ C GK+F+ K+ L H R VH ++ + C C F + +L +HK+ H
Sbjct: 58 HVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116
Query: 82 NTPRFKCKL--CPKMFTN 97
FKC+ C + F N
Sbjct: 117 GEKPFKCEFEGCDRRFAN 134
Score = 45.7 bits (109), Expect = 1e-07
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRHDN 82
KP+ C CGK F + +L +H+R H ++ ++C+ C RF +S H H +
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKR-THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
Query: 83 TPRFKC 88
Sbjct: 148 DKSGPS 153
Score = 40.7 bits (96), Expect = 8e-06
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCD 61
KP+ C E C + F H VH +D+
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMH-VHTSDKSGPSS 154
Score = 35.3 bits (82), Expect = 8e-04
Identities = 9/73 (12%), Positives = 15/73 (20%), Gaps = 10/73 (13%)
Query: 33 ECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH---------DNT 83
G + + + + C F T L+ H
Sbjct: 2 SSGSSGQPIKQELSCKW-IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 84 PRFKCKLCPKMFT 96
+C K F
Sbjct: 61 YWEECPREGKSFK 73
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 45.3 bits (108), Expect = 2e-08
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
K Y C ECGKAF + F LT HQ+
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQK 33
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 2e-08
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGK F + L H+ +H ++
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 2e-08
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGK F + L H+ +H ++
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 44.9 bits (107), Expect = 3e-08
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY C++CGKAF +K SL +H R
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIR 32
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 3e-08
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQC 60
KPY C ECGK F + L H+R VH +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGP 43
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 44.6 bits (106), Expect = 7e-08
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
+PYAC E C + F + LT H R +H + +QC +C+ F + L H + H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 31.1 bits (71), Expect = 0.010
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQR 49
KP+ C C + F + LT H R
Sbjct: 47 QKPFQCRICMRNFSRSDHLTTHIR 70
Score = 30.4 bits (69), Expect = 0.023
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 48 QRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMF 95
+V R Y C + C RF + L H + H F+C++C + F
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 44.3 bits (104), Expect = 7e-08
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 29 YACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
Y CEECG +K L H R H + R Y C C F T +L H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 29.7 bits (66), Expect = 0.037
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
+PY C C +F+ K +LT H +
Sbjct: 28 RPYHCTYCNFSFKTKGNLTKHMK 50
Score = 27.4 bits (60), Expect = 0.22
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 57 RYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFTN 97
+Y C+ C R S L H + H + + C C F
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKT 41
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 8e-08
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCD 61
KP+ C+ECG F SL H R H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGPS 44
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 43.3 bits (103), Expect = 1e-07
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY CE CG FR +L H R
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLR 32
Score = 24.4 bits (54), Expect = 2.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 58 YQCDLCLARFVTNSSLIVHKQRH 80
Y C++C RF +L H + H
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIH 34
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 42.6 bits (100), Expect = 2e-07
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLC 63
K ACE CGK FR + L H+ H ++ Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPS 46
Score = 28.8 bits (64), Expect = 0.071
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 56 RRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLC 91
++ C++C F L HK H +
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 42.1 bits (100), Expect = 3e-07
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY CE CG F + L H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVL 32
Score = 25.9 bits (58), Expect = 0.61
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 47 HQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
++ Y+C+ C ARFV + L H H
Sbjct: 2 SSG-SSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 41.9 bits (99), Expect = 5e-07
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH 52
KPY+C EC + F L HQ+ +H
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQK-MH 33
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 41.6 bits (97), Expect = 1e-06
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 8/54 (14%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
+ C +CG F ++ +L+ + C+ C ++L +
Sbjct: 17 RSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAALNKDEGNE 62
Score = 29.6 bits (66), Expect = 0.051
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 43 SLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFT 96
S Q+ +HL DR +C C F+ S+L K C+ C K
Sbjct: 5 SSGKRQK-IHLGDRSQKCSKCGIIFIRRSTLSRRK-------TPMCEKCRKDSC 50
Score = 23.5 bits (50), Expect = 8.0
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 69 TNSSLIVHKQRHDNTPRFKCKLCPKMFTNTVS 100
++ S ++ H KC C +F +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRST 33
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 40.1 bits (94), Expect = 4e-06
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCDL--CLARFVTNSSLIVHKQRH 80
+ + C CGK + K L H R H ++ + C C RF + L H++ H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 40.0 bits (93), Expect = 7e-06
Identities = 10/70 (14%), Positives = 16/70 (22%), Gaps = 8/70 (11%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLAR--------FVTNSSLIVHKQ 78
+ C + F L H H+ +C F L+ H +
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 79 RHDNTPRFKC 88
H
Sbjct: 84 VHTGEKSGPS 93
Score = 26.1 bits (57), Expect = 1.2
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 1/44 (2%)
Query: 49 RHVHLNDRRYQCDLCLARFVTNSSLIVHKQR-HDNTPRFKCKLC 91
+ + C F T L+ H H P +C
Sbjct: 17 KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 38.7 bits (90), Expect = 1e-05
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
P+ C +C + F ++ L H+R
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHER 33
Score = 24.8 bits (54), Expect = 1.5
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 52 HLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
+ ++C C F + L+ H++ H
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTH 35
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 38.8 bits (89), Expect = 4e-05
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDN 82
+ + C C F SL H R+ C +C F + S + H + N
Sbjct: 72 ISQFVCPLCLMPFSSSVSLKQHIRYTE---HTKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 29.1 bits (64), Expect = 0.16
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 56 RRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFTNT 98
++ C LCL F ++ SL H + ++T C +C K FT+T
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHT--KVCPVCKKEFTST 113
Score = 26.4 bits (57), Expect = 1.1
Identities = 9/31 (29%), Positives = 9/31 (29%)
Query: 22 ILYCVKPYACEECGKAFRKKFSLTMHQRHVH 52
I Y C C K F S H H
Sbjct: 94 IRYTEHTKVCPVCKKEFTSTDSALDHVCKKH 124
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 36.9 bits (86), Expect = 5e-05
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDRRYQCD 61
KP+AC CG F + L+ H+R H +
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGPS 46
Score = 27.7 bits (62), Expect = 0.13
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 47 HQRHVHLNDRRYQCD--LCLARFVTNSSLIVHKQRHDNTPRFKC 88
++ + C C RF + L H++ H
Sbjct: 3 SGS-SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 34.8 bits (79), Expect = 3e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLND 55
KPYAC+ CGK ++ + L+ H H HL +
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHLAE 34
Score = 24.4 bits (52), Expect = 3.1
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 54 NDRRYQCDLCLARFVTNSSLIVHKQRH 80
D+ Y CD+C R+ L H
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYHYAHS 30
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 35.3 bits (80), Expect = 6e-04
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRF 86
+ Y C C H+R C C RF + H+ + + +
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCR---NAAVCPYCSLRFFSPELKQEHESKCEYK-KL 70
Query: 87 KCKLCPKMFT 96
C C + F
Sbjct: 71 TCLECMRTFK 80
Score = 30.6 bits (68), Expect = 0.031
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 24 YCVKPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQR 79
C C C F H+ ++ C C+ F ++ S+ H+
Sbjct: 38 LCRNAAVCPYCSLRFFSPELKQEHESKC--EYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 28.7 bits (63), Expect = 0.17
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 54 NDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFTNTV 99
N YQC LC A+ + H++ N C C F +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPE 56
Score = 27.9 bits (61), Expect = 0.31
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH 52
K C EC + F+ FS+ HQ VH
Sbjct: 68 KKLTCLECMRTFKSSFSIWRHQVEVH 93
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.6 bits (76), Expect = 8e-04
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRR 57
K + C ECG+ F + SL HQ +H+ +
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQV-LHMGQKN 40
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 32.9 bits (74), Expect = 0.002
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 28 PYACEECGKAFRKKFSLTMHQ 48
C+ECGK FR L HQ
Sbjct: 12 TSECQECGKIFRHSSLLIEHQ 32
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.1 bits (77), Expect = 0.004
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 56 RRYQCDLCLARFVTNSSLIVHKQRH 80
YQC +C A + L H H
Sbjct: 179 HGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.0 bits (69), Expect = 0.045
Identities = 5/23 (21%), Positives = 5/23 (21%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
Y C C L H
Sbjct: 179 HGYQCHVCSAVLFSPLDLDAHVA 201
Score = 25.6 bits (55), Expect = 3.7
Identities = 3/42 (7%), Positives = 14/42 (33%)
Query: 59 QCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFTNTVS 100
+ A + + + + ++C +C + + +
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLD 195
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 29.6 bits (67), Expect = 0.021
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQR 49
+KP+ C +C ++F + L +H++
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRK 32
Score = 28.1 bits (63), Expect = 0.095
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 52 HLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
+ +QC C F + L +H++RH
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 30.1 bits (67), Expect = 0.052
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLN---DRRYQCDLCLARFVTNSSLIVHKQR-HDN 82
Y C+ C T H H N + Y C C +L H + H
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Query: 83 TPRFKCKL 90
FK +
Sbjct: 77 EENFKLTM 84
Score = 24.3 bits (52), Expect = 5.7
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 4/55 (7%)
Query: 47 HQRHVHLNDRRYQCDLCLARFVTNSSLIVH-KQRHDN---TPRFKCKLCPKMFTN 97
H + + Y+C C + + H H N + C C +
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 28.3 bits (63), Expect = 0.088
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDR 56
K + C C K F++++++ H + HL DR
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQ-THLEDR 47
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 27.7 bits (61), Expect = 0.12
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRH 50
KPY CE CGK F + L H RH
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRH 24
Score = 23.5 bits (50), Expect = 4.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 58 YQCDLCLARFVTNSSLIVHKQRHD 81
Y C+ C RFV +S L H + HD
Sbjct: 3 YVCERCGKRFVQSSQLANHIRHHD 26
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 27.2 bits (61), Expect = 0.16
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVHLNDR 56
+P+ C CGK F + L H+R H ++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGEK 31
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.5 bits (60), Expect = 0.16
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
K + C +C K F LT H+R
Sbjct: 11 KCFKCNKCEKTFSCSKYLTQHER 33
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 27.1 bits (59), Expect = 0.17
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQR 49
++PY+C CGK F K + H R
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYR 24
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 27.1 bits (60), Expect = 0.17
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH 52
K YAC C +AF ++ L H + +H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.4 bits (65), Expect = 0.18
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH 52
Y C C F +L+ H R H
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDH 140
Score = 29.4 bits (65), Expect = 0.19
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 54 NDRRYQCDLCLARFVTNSSLIVHKQR 79
N Y C++C ARF T S+L H +
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLRS 138
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 27.3 bits (60), Expect = 0.19
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 54 NDRRYQCDL--CLARFVTNSSLIVHKQRHDNTPRF 86
+D+ + C C RF L VHK +H+ T +F
Sbjct: 3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF 37
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 26.9 bits (60), Expect = 0.20
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
+ + CE C +AF ++ L H R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.4 bits (62), Expect = 0.22
Identities = 13/60 (21%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 27 KPYACEECGKAFRKKFS-LTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVH-KQRHDNTP 84
C C RK L H +C C +F + + L H H P
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 26.4 bits (57), Expect = 1.0
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLND 55
C+ C K F+ K L H H
Sbjct: 52 QDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Score = 24.9 bits (53), Expect = 3.8
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 57 RYQCDLC-LARFVTNSSLIVHKQR-HDNTPRFKCKLCPKMFTN 97
C C + T L H + KC+ C K F +
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKS 66
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.8 bits (58), Expect = 0.30
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY+C CG F++K ++ H R
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVR 31
Score = 25.6 bits (55), Expect = 1.0
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 52 HLNDRRYQCDLCLARFVTNSSLIVHKQRHDNT 83
++ Y C +C RF + H + HD +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 26.6 bits (58), Expect = 0.30
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQR 49
+KPY C C + F +L H R
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVR 24
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 25.4 bits (56), Expect = 0.86
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 27 KPYAC--EECGKAFRKKFSLTMHQR 49
K + C + CGK + K L H R
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLR 31
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 26.7 bits (58), Expect = 1.2
Identities = 4/36 (11%), Positives = 8/36 (22%)
Query: 22 ILYCVKPYACEECGKAFRKKFSLTMHQRHVHLNDRR 57
+ K E+ + L L +
Sbjct: 202 LARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 1.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
K + CE C K F+ K SL H R +H N++
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLR-IHTNEK 36
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 1.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
KPY C +C A K +L +H R
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLR 30
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural
genomics, PSI-2, protein structure initiative; NMR
{Sulfolobus solfataricus} PDB: 2q00_A
Length = 129
Score = 25.7 bits (56), Expect = 2.2
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 14 DVVQSFPIILYCVKPY-ACEECGKAFRKKFSLTMHQRHVHLNDR 56
D+VQ+ C K Y A EE K + +L +V R
Sbjct: 22 DLVQA------CEKYYKAAEEAIKLLVIENNLKEITNNVKNKGR 59
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics,
joint center structural genomics, JCSG; HET: MSE; 1.54A
{Pectobacterium atrosepticum SCRI1043}
Length = 333
Score = 25.8 bits (56), Expect = 2.5
Identities = 3/12 (25%), Positives = 5/12 (41%)
Query: 50 HVHLNDRRYQCD 61
+ +ND D
Sbjct: 228 GMDVNDNLRGWD 239
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.0 bits (51), Expect = 2.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 58 YQCDLCLARFVTNSSLIVHKQRHDN 82
Y+C LC FV S+L H++ H N
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 23.8 bits (51), Expect = 3.7
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 55 DRRYQCDL--CLARFVTNSSLIVHKQRHDN 82
DR Y CD C FV N LI HK+ H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 23.6 bits (51), Expect = 4.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
+ Y C C + FR +L H VH DR
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMN-VHRRDR 33
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 23.6 bits (50), Expect = 4.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 27 KPYACEECGKAFRKKFSLTMHQRH 50
KP C CGKAF + SL H R
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQ 24
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 24.4 bits (52), Expect = 5.9
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 28 PYACEECGKAFRKKFSLTMHQRHVH 52
+ C CGK R + H H
Sbjct: 62 MFTCHHCGKQLRSLAGMKYHVMANH 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.4 bits (52), Expect = 9.7
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 31/121 (25%)
Query: 2 VVRSREVMEIQKDVVQSFP---IILYCVKPYACEECGK-----------AFRKKFS---- 43
V R + +++++ +++ P +++ V GK + K
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVL-----GSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 44 -LTMHQRH------VHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFT 96
L + + L YQ D +SS I + H + L K +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYE 244
Query: 97 N 97
N
Sbjct: 245 N 245
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.138 0.440
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,411,845
Number of extensions: 67773
Number of successful extensions: 812
Number of sequences better than 10.0: 1
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 363
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.0 bits)