RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14147
         (100 letters)



>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 39

 Score = 49.2 bits (118), Expect = 2e-10
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDL 62
          KPY C+ CGK F +   L  H + VH ++R ++C +
Sbjct: 4  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39



 Score = 28.4 bits (64), Expect = 0.023
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 55 DRRYQCDLCLARFVTNSSLIVHKQR-HDNTPRFKCKL 90
           + Y C  C   F     L  H ++ H +    KC++
Sbjct: 3  GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39


>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 53

 Score = 42.7 bits (100), Expect = 9e-08
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
          K Y C+ CGK+F  K     H        R Y C +C  +F     L+ H + H
Sbjct: 2  KLYPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKIH 53



 Score = 28.5 bits (63), Expect = 0.027
 Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRHDNTPRFKCKLCPKMFT 96
          D+ Y C  C   F   S    H   H     + C +C K F 
Sbjct: 1  DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK 41



 Score = 28.1 bits (62), Expect = 0.039
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 24 YCVKPYACEECGKAFRKKFSLTMHQR 49
            ++PY C  CGK F+ K  L  H +
Sbjct: 26 LGLRPYGCGVCGKKFKMKHHLVGHMK 51


>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 28

 Score = 41.4 bits (98), Expect = 2e-07
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
          KP+ C  C + F +   LT H R
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIR 24


>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 26

 Score = 41.4 bits (98), Expect = 2e-07
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
          KPY C ECGKAF +   L  HQR
Sbjct: 1  KPYKCLECGKAFSQNSGLINHQR 23


>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 33

 Score = 41.1 bits (97), Expect = 3e-07
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
          KPY C ECGKAF +   L  HQR
Sbjct: 6  KPYGCVECGKAFSRSSILVQHQR 28



 Score = 29.5 bits (67), Expect = 0.007
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 51 VHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
          +H  ++ Y C  C   F  +S L+ H++ H
Sbjct: 1  IHSGEKPYGCVECGKAFSRSSILVQHQRVH 30


>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
          Saccharomyces cerevisiae sequence}
          Length = 29

 Score = 39.9 bits (94), Expect = 7e-07
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
          + + CE C +AF ++  L  H R
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYR 23


>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 39.2 bits (92), Expect = 2e-06
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH 52
          KPY C  C   F +  ++ MH    H
Sbjct: 7  KPYECYICHARFTQSGTMKMHILQKH 32



 Score = 31.1 bits (71), Expect = 0.002
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 51 VHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
           H  ++ Y+C +C ARF  + ++ +H  + 
Sbjct: 2  THSGEKPYECYICHARFTQSGTMKMHILQK 31


>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 38.1 bits (89), Expect = 5e-06
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
          KPYAC  C K FR+K  L MH +
Sbjct: 7  KPYACSHCDKTFRQKQLLDMHFK 29



 Score = 29.6 bits (67), Expect = 0.007
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 51 VHLNDRRYQCDLCLARFVTNSSLIVHKQRHDNT 83
           H  ++ Y C  C   F     L +H +R+ + 
Sbjct: 2  THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34


>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 35

 Score = 37.8 bits (88), Expect = 5e-06
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
          +P+ C  C  AF  K +   H +
Sbjct: 6  RPFVCRICLSAFTTKANCARHLK 28


>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 29

 Score = 37.7 bits (88), Expect = 6e-06
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
          K +AC EC K F +   L+ H +
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIK 23



 Score = 24.6 bits (54), Expect = 0.49
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 56 RRYQCDLCLARFVTNSSLIVHKQRH 80
          +++ C  C  RF+ +  L  H + H
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKTH 25


>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 30

 Score = 36.2 bits (84), Expect = 2e-05
 Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 27 KPYACEE--CGKAFRKKFSLTMHQR 49
          KP+ C    C K++ +  +L  H R
Sbjct: 1  KPHKCTFEGCRKSYSRLENLKTHLR 25


>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 31

 Score = 35.4 bits (82), Expect = 4e-05
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 27 KPYAC--EECGKAFRKKFSLTMHQR 49
          +P+ C    CGK F +   L  H+R
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKR 25


>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 29

 Score = 35.4 bits (82), Expect = 5e-05
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 27 KPYACEE--CGKAFRKKFSLTMHQR 49
          +PYAC    C + F +   LT H R
Sbjct: 1  RPYACPVESCDRRFSRSADLTRHIR 25


>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 35.5 bits (82), Expect = 5e-05
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 29 YACEE--CGKAFRKKFSLTMHQRHVHLNDRRYQCD 61
          ++C E  CGK+F  K  L  H + +H + R Y C+
Sbjct: 2  FSCPEPACGKSFNFKKHLKEHMK-LHSDTRDYICE 35



 Score = 23.9 bits (52), Expect = 1.3
 Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)

Query: 58 YQCD--LCLARFVTNSSLIVHKQRHDNTPRFKCK 89
          + C    C   F     L  H + H +T  + C+
Sbjct: 2  FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35


>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
          domain) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 34.7 bits (80), Expect = 9e-05
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 27 KPYACEE--CGKAFRKKFSLTMHQR 49
          KP+ C    CGK F   F+L  H R
Sbjct: 1  KPFQCTFEGCGKRFSLDFNLRTHVR 25


>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 37

 Score = 34.7 bits (80), Expect = 1e-04
 Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLN 54
          KP+ C +C ++F +   L +H++  H+ 
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRK-RHML 36



 Score = 28.9 bits (65), Expect = 0.016
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 47 HQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
            R      + +QC  C   F  +  L +H++RH
Sbjct: 2  STR-GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34


>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
          protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 38

 Score = 33.2 bits (76), Expect = 4e-04
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
          + Y C+ECGK+F     L+ H+R
Sbjct: 11 RRYKCDECGKSFSHSSDLSKHRR 33



 Score = 30.5 bits (69), Expect = 0.004
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 47 HQRHVHLNDRRYQCDLCLARFVTNSSLIVHKQRH 80
           +       RRY+CD C   F  +S L  H++ H
Sbjct: 3  SEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTH 35


>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 32

 Score = 33.1 bits (76), Expect = 4e-04
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 27 KPYACEE--CGKAFRKKFSLTMHQR 49
          +PY+C+   C KAF +   L  H++
Sbjct: 2  RPYSCDHPGCDKAFVRNHDLIRHKK 26



 Score = 21.9 bits (47), Expect = 6.3
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 55 DRRYQCD--LCLARFVTNSSLIVHKQRH 80
          DR Y CD   C   FV N  LI HK+ H
Sbjct: 1  DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28


>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 38

 Score = 28.7 bits (64), Expect = 0.018
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 54 NDRRYQCDL--CLARFVTNSSLIVHKQRHDNTPRF 86
          +D+ + C    C  RF     L VHK +H+ T +F
Sbjct: 3  DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF 37


>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
          domain) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 27.7 bits (62), Expect = 0.032
 Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)

Query: 27 KPYACEE--CGKAFRKKFSLTMHQR 49
          +PY C    C K F +  +L  H  
Sbjct: 1  RPYVCPFDGCNKKFAQSTNLKSHIL 25


>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 35

 Score = 26.9 bits (59), Expect = 0.074
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 27 KPYACEECGKAFRKKFSLTMHQ 48
          K  ACE CGK FR  + L  H+
Sbjct: 4  KQVACEICGKIFRDVYHLNRHK 25


>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 26

 Score = 26.2 bits (57), Expect = 0.15
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 28 PYACEECGKAFRKKFSLTMHQR 49
          P+ CE CGK F +K  L  H R
Sbjct: 1  PHKCEVCGKCFSRKDKLKTHMR 22


>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 41

 Score = 26.3 bits (57), Expect = 0.20
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 27 KPYACEECGKAFRKKFSLTMHQRHVH 52
          K   C EC + F+  FS+  HQ  VH
Sbjct: 2  KKLTCLECMRTFKSSFSIWRHQVEVH 27


>d1a0ca_ c.1.15.3 (A:) D-xylose isomerase {Clostridium
           thermosulfurogenes, also known as Thermoanaerobacter
           thermosulfurigenes [TaxId: 33950]}
          Length = 437

 Score = 27.1 bits (60), Expect = 0.33
 Identities = 3/21 (14%), Positives = 6/21 (28%)

Query: 50  HVHLNDRRYQCDLCLARFVTN 70
            +  N           +F T+
Sbjct: 293 SIDANTGDMLLGWDTDQFPTD 313


>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 47

 Score = 25.7 bits (56), Expect = 0.37
 Identities = 5/25 (20%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 27 KPYACEEC--GKAFRKKFSLTMHQR 49
          K + C      K F++++++  H +
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQ 41



 Score = 24.1 bits (52), Expect = 1.3
 Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 3/36 (8%)

Query: 48 QRHV-HLNDRRYQCDLCLA--RFVTNSSLIVHKQRH 80
           ++V  + D+ ++C        F    ++  H Q H
Sbjct: 8  DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43


>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 44

 Score = 25.1 bits (54), Expect = 0.45
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 26 VKPYACEECGKAFRKKFSLTMHQRHVHLNDRRYQCD 61
          +KPY C  C K F  + S     RHV    + Y+  
Sbjct: 3  IKPYECNICAKRFMWRDSF---HRHVTSCTKSYEAA 35


>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 29

 Score = 24.4 bits (53), Expect = 0.63
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 27 KPYAC--EECGKAFRKKFSLTMHQRHVH 52
          KPY C    C K +    SL  H + VH
Sbjct: 1  KPYVCKLPGCTKRYTDPSSLRKHVKTVH 28


>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
          Saccharomyces cerevisiae sequence}
          Length = 31

 Score = 24.4 bits (53), Expect = 0.79
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 28 PYACEECGKAFRKKFSLTMHQRHVH 52
          PY C  C +AF ++  L  H + +H
Sbjct: 1  PYPCGLCNRAFTRRDLLIRHAQKIH 25


>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 31

 Score = 23.7 bits (51), Expect = 1.1
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 27 KPYACE--ECGKAFRKKFSLTMHQRHVHLND 55
          KPY CE   C KAF        HQ   H N+
Sbjct: 1  KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 31


>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 32

 Score = 23.8 bits (51), Expect = 1.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
          KPY+C  CG  F++K  ++ H R
Sbjct: 2  KPYSCPVCGLRFKRKDRMSYHVR 24


>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 28

 Score = 23.6 bits (51), Expect = 1.4
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHL 53
          KP+AC+ CG+ F +      H + +HL
Sbjct: 2  KPFACDICGRKFARSDERKRHTK-IHL 27


>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 23.5 bits (50), Expect = 1.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 55 DRRYQCDLCLARFVTNSSLIVHKQRH 80
          +R ++C +C      +S L VH + H
Sbjct: 1  ERPFKCQICPYASRNSSQLTVHLRSH 26



 Score = 21.5 bits (45), Expect = 7.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 27 KPYACEECGKAFRKKFSLTMHQR 49
          +P+ C+ C  A R    LT+H R
Sbjct: 2  RPFKCQICPYASRNSSQLTVHLR 24


>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
          domain) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 23.0 bits (49), Expect = 1.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 29 YACEECGKAFRKKFSLTMHQ 48
          + C ECGKAF +   L  HQ
Sbjct: 3  HVCAECGKAFVESSKLKRHQ 22


>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
          8355]}
          Length = 26

 Score = 23.2 bits (49), Expect = 2.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 58 YQCDLCLARFVTNSSLIVHKQRHDN 82
          Y+C LC   FV  S+L  H++ H N
Sbjct: 1  YKCGLCERSFVEKSALSRHQRVHKN 25


>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 37

 Score = 22.7 bits (49), Expect = 3.4
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 27 KPYACEECGKAFRKKFSLTMHQRHVHLNDR 56
          + Y C  C + FR   +L  H   VH  DR
Sbjct: 4  RSYTCSFCKREFRSAQALGGHMN-VHRRDR 32


>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 29

 Score = 22.2 bits (47), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 28 PYACEECGKAFRKKFSLTMHQR 49
          PY C  C  +F+ K +LT H +
Sbjct: 1  PYHCTYCNFSFKTKGNLTKHMK 22


>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 22.4 bits (47), Expect = 3.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 26 VKPYACEECGKAFRKKFSLTMHQR 49
          VKPY C+ C  A     SL  H R
Sbjct: 1  VKPYKCKTCDYAAADSSSLNKHLR 24


>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score = 22.3 bits (48), Expect = 7.6
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 29 YACEECGKAFRKKFSLTMHQR 49
          + C  C + F    +L  H R
Sbjct: 16 HRCLACARYFIDSTNLKTHFR 36


>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 21.4 bits (45), Expect = 9.1
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 28 PYACEECGKAFRKKFSLTMHQRHVHL 53
          P  C  C +  +   SL    +  H+
Sbjct: 8  PSHCAGCKEEIKHGQSLLALDKQWHV 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 356,508
Number of extensions: 14377
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 88
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.1 bits)