BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14149
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A3D|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (dacb)
From Haemophilus Influenzae
pdb|3A3D|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 (dacb)
From Haemophilus Influenzae
pdb|3A3E|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae, Complexed With Novel Beta-
Lactam (Cmv)
pdb|3A3E|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae, Complexed With Novel Beta-
Lactam (Cmv)
pdb|3A3F|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae,Complexed With Novel Beta-
Lactam (Fmz)
pdb|3A3F|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae,Complexed With Novel Beta-
Lactam (Fmz)
pdb|3A3I|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae, Complexed With Ampicillin
(Aix)
pdb|3A3I|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae, Complexed With Ampicillin
(Aix)
Length = 453
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 23/93 (24%)
Query: 127 LQKSDKDL-ETLFRQ-----YKDPSVDTRGKLKIKSILEEVSTWVTIAIDESDFGTGLEF 180
++KSD + ++LFR YK P+ G L +KSIL++ G+ F
Sbjct: 281 MKKSDNQIADSLFRAVAFNYYKRPASFQLGTLAVKSILQK---------------QGIRF 325
Query: 181 GLDLF--GSGIEDLHSMTKCTLGVAYQYLYRNE 211
G + GSG+ + + T+ +Y+ +NE
Sbjct: 326 GNSILADGSGLSRHNLVAPKTMLSVLEYIAKNE 358
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 45 FIFINEKLNEKVKSADLASSPSKVSSLQQKLTDFAHGHK-----------IDLDAPKLSS 93
+ ++N+ E + D P+ V + ++ F HK IDLD KL S
Sbjct: 468 WFYLNDSFREGINVEDEIKDPNSVLNFWKEALKFRKAHKDITVYGYDFEFIDLDNKKLFS 527
Query: 94 VVRARKAKTVCKGLS 108
+ KT+ L+
Sbjct: 528 FTKKYNNKTLFAALN 542
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 45 FIFINEKLNEKVKSADLASSPSKVSSLQQKLTDFAHGHK-----------IDLDAPKLSS 93
+ ++N+ E + D P+ V + ++ F HK IDLD KL S
Sbjct: 468 WFYLNDSFREGINVEDEIKDPNSVLNFWKEALKFRKAHKDITVYGYDFEFIDLDNKKLFS 527
Query: 94 VVRARKAKTVCKGLS 108
+ KT+ L+
Sbjct: 528 FTKKYNNKTLFAALN 542
>pdb|1E1D|A Chain A, Hybrid Cluster Protein From Desulfovibrio Vulgaris
Length = 553
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 106 GLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPSVDTRGKLKIK---------S 156
GL GV + LG+R + + LE L KD SVD L +K +
Sbjct: 154 GLKGVAAYAEHA--AVLGFRKTEIDEFMLEALASTTKDLSVDEMVALVMKGRRMAVTTMA 211
Query: 157 ILEEV--STWVTIAIDESDFGTGLEFGLDLFGSGIEDLHSMTKCTLGVA 203
+L+E +T+ I + + G G G+ + G ++D+ + K T G
Sbjct: 212 LLDEANTTTYGNPEITQVNIGVGKNPGILISGHDLKDMAELLKQTEGTG 260
>pdb|1GNT|A Chain A, Hybrid Cluster Protein From Desulfovibrio Vulgaris. X-Ray
Structure At 1.25a Resolution Using Synchrotron
Radiation.
pdb|1OA1|A Chain A, Reduced Hybrid Cluster Protein (Hcp) From Desulfovibrio
Vulgaris Hildenborough Structure At 1.55a Resolution
Using Synchrotron Radiation
Length = 553
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 106 GLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPSVDTRGKLKIK---------S 156
GL GV + LG+R + + LE L KD SVD L +K +
Sbjct: 154 GLKGVAAYAEHA--AVLGFRKTEIDEFMLEALASTTKDLSVDEMVALVMKAGGMAVTTMA 211
Query: 157 ILEEV--STWVTIAIDESDFGTGLEFGLDLFGSGIEDLHSMTKCTLGVA 203
+L+E +T+ I + + G G G+ + G ++D+ + K T G
Sbjct: 212 LLDEANTTTYGNPEITQVNIGVGKNPGILISGHDLKDMAELLKQTEGTG 260
>pdb|1E2U|A Chain A, Low Temperature Stucture Of Hybrid Cluster Protein From
Desulfovibrio Vulgaris To 1.6a
pdb|1E9V|A Chain A, Xenon Bound In Hydrophobic Channel Of Hybrid Cluster
Protein From Desulfovibrio Vulgaris
pdb|1W9M|A Chain A, As-Isolated Hybrid Cluster Protein From Desulfovibrio
Vulgaris X-Ray Structure At 1.35a Resolution Using Iron
Anomalous Signal
Length = 553
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 106 GLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPSVDTRGKLKIK---------S 156
GL GV + LG+R + + LE L KD SVD L +K +
Sbjct: 154 GLKGVAAYAEHA--AVLGFRKTEIDEFMLEALASTTKDLSVDEMVALVMKAGGMAVTTMA 211
Query: 157 ILEEV--STWVTIAIDESDFGTGLEFGLDLFGSGIEDLHSMTKCTLGVA 203
+L+E +T+ I + + G G G+ + G ++D+ + K T G
Sbjct: 212 LLDEANTTTYGNPEITQVNIGVGKNPGILISGHDLKDMAELLKQTEGTG 260
>pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|C Chain C, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|D Chain D, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
Length = 266
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 31 SNRDCKINPVAPNIFI--FINEKLNEKVKSADLASSPSKVSSLQQKLT 76
++R+ +N +AP FI + +KLNEK K A +A P K + +++
Sbjct: 192 ASRNITVNCIAPG-FIKSAMTDKLNEKQKEAIMAMIPMKRMGIGEEIA 238
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 19 CPDEAPVFIASNSNRDCKINPVAP 42
CP EA V +A N N+ KI P P
Sbjct: 92 CPAEAGVLLAYNKNQQIKIPPGTP 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,596,198
Number of Sequences: 62578
Number of extensions: 263957
Number of successful extensions: 589
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 8
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)