BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14149
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CFE2|CD027_MOUSE UPF0609 protein C4orf27 homolog OS=Mus musculus PE=2 SV=1
Length = 346
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 118/218 (54%), Gaps = 5/218 (2%)
Query: 1 TIIVSTGKDHLHFGYFRDCPDEAPVFIASN-SNRDCKINPVAPNIFIFINEKLNEKVKSA 59
TII+ K H GYFRD PDE PV++ +N + ++C I N+F I L +K+K
Sbjct: 117 TIIIGDNKTQYHMGYFRDSPDELPVYVGTNEAKKNCIIIQNGDNVFAAIKLFLMKKLKEV 176
Query: 60 DLASSPSKVSSLQQKLTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKK 119
S + ++ +KLT+ A K+ + + +R R K V K G G+VVP V K
Sbjct: 177 TDRKKISILKNIDEKLTEAAR--KLGYSLEQRTVKMRQRDKKVVTKTFHGAGLVVP-VDK 233
Query: 120 TELGYRPLQKSDKDLETLFRQYKDPSVDTRGKLKIKSILEEVSTWVTIAIDESDFGTGLE 179
++GYR L ++D DL+ + + D + D +LK + ++E+ T+V A DE D+G GLE
Sbjct: 234 NDVGYRELPETDADLKRICKAVVDAASDEE-RLKAFAPIQEMMTFVQFANDECDYGMGLE 292
Query: 180 FGLDLFGSGIEDLHSMTKCTLGVAYQYLYRNEFDTILE 217
G+DLF G H + L +AY L R+ F I+E
Sbjct: 293 LGMDLFCYGSHYFHKVAGQLLPLAYNLLKRDLFAKIIE 330
>sp|Q9NWY4|CD027_HUMAN UPF0609 protein C4orf27 OS=Homo sapiens GN=C4orf27 PE=1 SV=2
Length = 346
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 119/220 (54%), Gaps = 9/220 (4%)
Query: 1 TIIVSTGKDHLHFGYFRDCPDEAPVFIASN-SNRDCKINPVAPNIFIFINEKLNEKVKSA 59
TII+ K H GYFRD PDE PV++ N + ++C I P N+F + L +K++
Sbjct: 117 TIIIGDNKTQYHMGYFRDSPDEFPVYVGINEAKKNCIIVPNGDNVFAAVKLFLTKKLREI 176
Query: 60 DLASSPSKVSSLQQKLTDFAH--GHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYV 117
+ + ++ +KLT+ A G+ ++ K+ + R K V K G G+VVP V
Sbjct: 177 TDKKKINLLKNIDEKLTEAARELGYSLEQRTVKM----KQRDKKVVTKTFHGAGLVVP-V 231
Query: 118 KKTELGYRPLQKSDKDLETLFRQYKDPSVDTRGKLKIKSILEEVSTWVTIAIDESDFGTG 177
K ++GYR L ++D DL+ + + + + D +LK + ++E+ T+V A DE D+G G
Sbjct: 232 DKNDVGYRELPETDADLKRICKTIVEAASDEE-RLKAFAPIQEMMTFVQFANDECDYGMG 290
Query: 178 LEFGLDLFGSGIEDLHSMTKCTLGVAYQYLYRNEFDTILE 217
LE G+DLF G H + L +AY L RN F I+E
Sbjct: 291 LELGMDLFCYGSHYFHKVAGQLLPLAYNLLKRNLFAEIIE 330
>sp|A2VDY4|CD027_BOVIN UPF0609 protein C4orf27 homolog OS=Bos taurus PE=2 SV=1
Length = 346
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 114/218 (52%), Gaps = 5/218 (2%)
Query: 1 TIIVSTGKDHLHFGYFRDCPDEAPVFIASN-SNRDCKINPVAPNIFIFINEKLNEKVKSA 59
TII+ K H GYFRD PDE PVF+ +N + ++C I N+F + L +K+K
Sbjct: 117 TIIIGDSKTQFHMGYFRDSPDELPVFVGTNEAKKNCIIVQSGDNVFAAVKLFLMKKLKEV 176
Query: 60 DLASSPSKVSSLQQKLTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKK 119
S + ++ +KLT+ A L+ + + ++ R K V K G G+VVP V K
Sbjct: 177 TDKKKSSLLKTIDEKLTEAARELGFSLE--QRTVRMKQRDKKVVTKTFHGAGLVVP-VDK 233
Query: 120 TELGYRPLQKSDKDLETLFRQYKDPSVDTRGKLKIKSILEEVSTWVTIAIDESDFGTGLE 179
++GYR L ++D L + + D +L+ + ++E+ T+V A DE D+G GLE
Sbjct: 234 NDVGYRELPETDASLRRICGTIVEAPSDA-DRLQAFAPVQEMMTYVQFANDECDYGMGLE 292
Query: 180 FGLDLFGSGIEDLHSMTKCTLGVAYQYLYRNEFDTILE 217
GLDLF G H + L +AY L RN F I+E
Sbjct: 293 LGLDLFCHGSHYFHKVAGQLLPLAYNLLKRNLFAEIIE 330
>sp|Q9VNI3|U609_DROME UPF0609 protein CG1218 OS=Drosophila melanogaster GN=CG1218 PE=1
SV=2
Length = 449
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 14/221 (6%)
Query: 1 TIIVSTGKDHLHFGYFRDCP-DEAPVFIASN-SNRDCKINPVAPNIFIFINEKLNEKVKS 58
TI V G +H+GY+RD P D+ + IA N S + C+ VA N F L
Sbjct: 216 TIFVRRGTG-IHYGYWRDVPQDKENLLIARNDSAKGCQFQFVAGNAFDAFLYYLEH---- 270
Query: 59 ADLASSP---SKVSSLQQKLTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVP 115
D A++P +++ ++ + + + ++L +L + R R + V K GIVVP
Sbjct: 271 -DFAATPFSCGQLAGTKKAVAKYLSDNSLEL--AQLDRLQRERNKRVVAKTFHRAGIVVP 327
Query: 116 YVKKTELGYRPLQKSDKDLETLFRQYKDPSVDT-RGKLKIKSILEEVSTWVTIAIDESDF 174
+ +KTE+GYRPL SD +L+ + + VD K + L+ V+ IA+DESDF
Sbjct: 328 FDQKTEVGYRPLAVSDSELKKMLAMLERKDVDNGAAKQAVLEKLQPVANAANIAVDESDF 387
Query: 175 GTGLEFGLDLFGSGIEDLHSMTKCTLGVAYQYLYRNEFDTI 215
G+ LE G+D+F SG ++LH + L AY L R +F I
Sbjct: 388 GSALELGIDMFCSGHKELHMLASSLLVPAYSMLSRPQFIAI 428
>sp|Q7SXS8|CD027_DANRE UPF0609 protein C4orf27 homolog OS=Danio rerio GN=zgc:101819 PE=2
SV=2
Length = 348
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 5/218 (2%)
Query: 1 TIIVSTGKDHLHFGYFRDCPDEAPVFIASN-SNRDCKINPVAPNIFIFINEKLNEKVKSA 59
TII H GYFRD PD PVFI N + + I + NIF + L +K K
Sbjct: 118 TIIQGNADTQHHMGYFRDLPDALPVFIGENEAKKGYTITQLGDNIFAAVLLFLQKKKKEK 177
Query: 60 DLASSPSKVSSLQQKLTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKK 119
+ ++ L++ L ++ L + + ++ R+ K V K G GIVVP V K
Sbjct: 178 RQQKDDAALNRLEEDLK--REAERLGLPLEQKTKSMKQRERKVVTKTFHGAGIVVP-VDK 234
Query: 120 TELGYRPLQKSDKDLETLFRQYKDPSVDTRGKLKIKSILEEVSTWVTIAIDESDFGTGLE 179
++GYR L +SD L+ + + + + D ++K + ++E+ T+V A DE D+G G E
Sbjct: 235 NDVGYRELPESDASLKKICKAIAE-AKDDEERMKAFAPIQEMITFVQFANDECDYGMGYE 293
Query: 180 FGLDLFGSGIEDLHSMTKCTLGVAYQYLYRNEFDTILE 217
G+DLF G + + L +AY L R F ILE
Sbjct: 294 LGIDLFCYGSHYFFKVVRQLLPMAYNLLKRGLFGEILE 331
>sp|A8MVJ9|YI028_HUMAN Putative UPF0609 protein C4orf27-like OS=Homo sapiens PE=3 SV=1
Length = 347
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 5/202 (2%)
Query: 17 RDCPDEAPVFIASN-SNRDCKINPVAPNIFIFINEKLNEKVKSADLASSPSKVSSLQQKL 75
RD PDE PV++ N + ++C I P N+F + L +K+K + ++ +KL
Sbjct: 134 RDSPDELPVYVGINEAKKNCIIVPNGDNVFAAVKLYLMKKLKEVTDKKKTNLFKNVDEKL 193
Query: 76 TDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLE 135
T+ A L+ + ++ R K V K G G+V P V K +GYR L ++D DL+
Sbjct: 194 TETARELGYSLEQRTMK--MKQRDKKVVTKTFHGTGLVPP-VDKNVVGYRELPETDADLK 250
Query: 136 TLFRQYKDPSVDTRGKLKIKSILEEVSTWVTIAIDESDFGTGLEFGLDLFGSGIEDLHSM 195
+ + + + D + K + ++E+ T+V A DE D+G GLE G+DLF G H +
Sbjct: 251 RICKTIVEAASDDE-RRKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCYGSHYFHKV 309
Query: 196 TKCTLGVAYQYLYRNEFDTILE 217
L +AY L RN F I++
Sbjct: 310 AGQLLPLAYNLLKRNLFAEIMK 331
>sp|P0CW41|MALX4_YEAST Oligo-1,6-glucosidase IMA4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=IMA4 PE=2 SV=1
Length = 589
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 20/117 (17%)
Query: 41 APNI--FIFINEKLNEKVKSADLASSPSKVSSLQQKLTDFAHGHK-----------IDLD 87
PN + ++NE E + + D + P+ V + ++ F HK IDLD
Sbjct: 462 GPNAKPWFYLNESFREGINAEDESKDPNSVLNFWKEALRFRKAHKDITVYGYDFEFIDLD 521
Query: 88 APKLSSVVRARKAKTVCKGLS----GVGIVVPYVK---KTELGYRPLQKSDKDLETL 137
KL S + KT+ L+ + +P K E G P + D TL
Sbjct: 522 NKKLFSFTKKYDNKTLFAALNFSSDSIDFTIPNNSSSFKLEFGNYPRSEVDASSRTL 578
>sp|P0CW40|MALX2_YEAST Oligo-1,6-glucosidase IMA3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=IMA3 PE=1 SV=1
Length = 589
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 20/117 (17%)
Query: 41 APNI--FIFINEKLNEKVKSADLASSPSKVSSLQQKLTDFAHGHK-----------IDLD 87
PN + ++NE E + + D + P+ V + ++ F HK IDLD
Sbjct: 462 GPNAKPWFYLNESFREGINAEDESKDPNSVLNFWKEALRFRKAHKDITVYGYDFEFIDLD 521
Query: 88 APKLSSVVRARKAKTVCKGLS----GVGIVVPYVK---KTELGYRPLQKSDKDLETL 137
KL S + KT+ L+ + +P K E G P + D TL
Sbjct: 522 NKKLFSFTKKYDNKTLFAALNFSSDSIDFTIPNNSSSFKLEFGNYPRSEVDASSRTL 578
>sp|Q08295|IMA2_YEAST Oligo-1,6-glucosidase IMA2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=IMA2 PE=2 SV=1
Length = 589
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 20/117 (17%)
Query: 41 APNI--FIFINEKLNEKVKSADLASSPSKVSSLQQKLTDFAHGHK-----------IDLD 87
PN + ++NE E + + D + P+ V + ++ F HK IDLD
Sbjct: 462 GPNAKPWFYLNESFREGINAEDESKDPNSVLNFWKEALRFRKAHKDITVYGYDFEFIDLD 521
Query: 88 APKLSSVVRARKAKTVCKGLS----GVGIVVPYVK---KTELGYRPLQKSDKDLETL 137
KL S + KT+ L+ + +P K E G P + D TL
Sbjct: 522 NKKLFSFTKKYDNKTLFAALNFSSDSIDFTIPNNSSSFKLEFGNYPRSEVDASSRTL 578
>sp|Q4L8T8|SCDA_STAHJ Iron-sulfur cluster repair protein ScdA OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=scdA PE=3 SV=1
Length = 222
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 46 IFINEKL-NEKVKSADLASSPSKVSSLQQKLTDFAHGHKIDLDAPKLSSVVRARKAKTVC 104
I INE + N+KV + L +++ + Q + + LDAP L +++R +T+
Sbjct: 35 ISINEAVKNKKVDAETLIDEINELPNHDQGNINVKY-----LDAPSLIQYIQSRYHETMR 89
Query: 105 KGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKD 143
+ + PYV K + P L+ L+RQY+D
Sbjct: 90 EEFKNLS---PYVTKVAKVHGPNHPFLIQLQDLYRQYRD 125
>sp|Q5M9G7|DIEXF_RAT Digestive organ expansion factor homolog OS=Rattus norvegicus
GN=Diexf PE=2 SV=1
Length = 763
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 22/119 (18%)
Query: 48 INEKLNEKVKSADLASSPSKVSSLQ-------------QKLTDFAHGHKIDLDAPKLSSV 94
IN++L EK A ASSP+ L+ QK+ F IDL + L
Sbjct: 199 INKELQEKEIQA-AASSPAATQQLKWPVLGHLVFSSKFQKMETFKPPKDIDLKSLHLQKP 257
Query: 95 VRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPSVDTRGKLK 153
+ + AKT + LSG P +K+ + PLQ K+L + Y+D R LK
Sbjct: 258 LESTWAKTNSQFLSG-----PGPQKSSSCFTPLQ---KELFLIMNSYRDLFYPERTALK 308
>sp|Q2NK04|PYRG_AYWBP CTP synthase OS=Aster yellows witches'-broom phytoplasma (strain
AYWB) GN=pyrG PE=3 SV=2
Length = 536
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 15/123 (12%)
Query: 30 NSNRDCKINPVAPNIF-IFINEKLNEKVKSADLASSPSKVSSLQQKLTDFAHGHKIDL-- 86
+ N K N A I+ IN++ K + P ++QKLTD A HK D+
Sbjct: 86 DENMSKKSNVTAGQIYQSVINKEREGKYLGKTVQVIPHITEEIKQKLTDAALFHKSDVVI 145
Query: 87 -----------DAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKT-ELGYRPLQKSDKDL 134
+P L ++ + R L +VPY+KKT E+ +P Q S K+L
Sbjct: 146 VEIGGTVGDIESSPFLEAIRQVRFDFGYRNVLYLHTTLVPYLKKTKEIKTKPTQHSFKEL 205
Query: 135 ETL 137
L
Sbjct: 206 RAL 208
>sp|Q3IYN5|IF2_RHOS4 Translation initiation factor IF-2 OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=infB PE=3 SV=1
Length = 836
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 19/142 (13%)
Query: 48 INEKLN-EKVKSADLASSPSKVSSLQQKLTDFAHGHKIDLDAPKLSSVV--------RAR 98
+NE L+ E ++ LA+ K +QK F H + + +L + A
Sbjct: 212 LNEALSGEGGRTRSLAAMKRKQEKARQKAMGFGHKAEKQVRDVQLPETILVQELANRMAE 271
Query: 99 KAKTVCKGLSGVGIVVPYVKKT----------ELGYRPLQKSDKDLETLFRQYKDPSVDT 148
+A V K L +G++V + E G+R ++ SD D+E + +D + D
Sbjct: 272 RAADVVKALMKMGMMVTMNQSIDADTAELVIEEFGHRAVRVSDADVEHVIDTVEDKAEDL 331
Query: 149 RGKLKIKSILEEVSTWVTIAID 170
+ + I +I+ V T +D
Sbjct: 332 QPRPPIITIMGHVDHGKTSLLD 353
>sp|A3PNL2|IF2_RHOS1 Translation initiation factor IF-2 OS=Rhodobacter sphaeroides
(strain ATCC 17029 / ATH 2.4.9) GN=infB PE=3 SV=1
Length = 836
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 19/142 (13%)
Query: 48 INEKLN-EKVKSADLASSPSKVSSLQQKLTDFAHGHKIDLDAPKLSSVV--------RAR 98
+NE L+ E ++ LA+ K +QK F H + + +L + A
Sbjct: 212 LNEALSGEGGRTRSLAAMKRKQEKARQKAMGFGHKAEKQVRDVQLPETILVQELANRMAE 271
Query: 99 KAKTVCKGLSGVGIVVPYVKKT----------ELGYRPLQKSDKDLETLFRQYKDPSVDT 148
+A V K L +G++V + E G+R ++ SD D+E + +D + D
Sbjct: 272 RAADVVKALMKMGMMVTMNQSIDADTAELVIEEFGHRAVRVSDADVEHVIDTVEDKAEDL 331
Query: 149 RGKLKIKSILEEVSTWVTIAID 170
+ + I +I+ V T +D
Sbjct: 332 QPRPPIITIMGHVDHGKTSLLD 353
>sp|B5Z863|CMOA_HELPG tRNA (cmo5U34)-methyltransferase OS=Helicobacter pylori (strain
G27) GN=cmoA PE=3 SV=1
Length = 239
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 15 YFRDCPDEAPVFIASNSNRDCKINPV-------APNIFIFINEKLNEKVKSADLASSPSK 67
Y+ + D FIA N + P+ N FI +N+++ + ++ + +S
Sbjct: 34 YYYEMLDLGAYFIAQNLKENLNAKPLIYDLGCSTGNFFIALNQQIQQDIELVGIDNSMPM 93
Query: 68 VSSLQQKLTDFAHGH 82
+ Q+KL DF +
Sbjct: 94 LKKAQEKLKDFKNAR 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,288,534
Number of Sequences: 539616
Number of extensions: 3363558
Number of successful extensions: 7826
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 7797
Number of HSP's gapped (non-prelim): 31
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)