Query psy14149
Match_columns 217
No_of_seqs 83 out of 85
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 20:44:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10228 DUF2228: Uncharacteri 100.0 1.1E-91 2.4E-96 618.6 19.2 212 1-215 40-253 (253)
2 KOG3952|consensus 100.0 2.3E-64 5.1E-69 438.7 6.8 213 1-217 75-288 (304)
3 KOG3952|consensus 93.7 0.042 9.2E-07 49.3 2.3 52 1-63 98-150 (304)
4 cd04769 HTH_MerR2 Helix-Turn-H 60.0 4.4 9.4E-05 31.5 1.0 38 106-145 19-56 (116)
5 PF12410 rpo30_N: Poxvirus DNA 57.1 19 0.00042 29.5 4.2 45 105-151 49-95 (136)
6 cd04786 HTH_MerR-like_sg7 Heli 52.0 9.1 0.0002 30.7 1.6 38 107-145 20-57 (131)
7 PHA02998 RNA polymerase subuni 50.6 27 0.00058 30.4 4.3 45 105-151 56-102 (195)
8 COG0789 SoxR Predicted transcr 47.5 11 0.00023 28.9 1.4 38 107-145 20-57 (124)
9 PHA03044 IMV membrane protein; 44.4 39 0.00085 25.1 3.8 36 131-167 8-43 (74)
10 PF06015 Chordopox_A30L: Chord 43.7 43 0.00093 24.8 3.9 36 131-167 6-41 (71)
11 TIGR02044 CueR Cu(I)-responsiv 41.3 23 0.0005 27.9 2.4 55 75-145 3-57 (127)
12 PRK09514 zntR zinc-responsive 40.1 19 0.00042 29.0 1.8 42 75-132 4-45 (140)
13 PF14096 DUF4274: Domain of un 40.0 13 0.00028 27.0 0.7 27 161-192 22-48 (77)
14 PRK10227 DNA-binding transcrip 39.8 17 0.00036 29.4 1.4 41 75-131 3-43 (135)
15 PRK13752 putative transcriptio 37.6 21 0.00047 29.1 1.7 54 75-144 10-63 (144)
16 PF12467 CMV_1a: Cucumber mosa 37.5 33 0.00071 29.5 2.8 34 155-191 31-64 (174)
17 cd01108 HTH_CueR Helix-Turn-He 37.2 26 0.00057 27.6 2.1 55 75-145 3-57 (127)
18 COG3612 Uncharacterized protei 36.9 45 0.00099 28.1 3.5 61 101-163 59-120 (157)
19 COG1329 Transcriptional regula 36.4 55 0.0012 27.9 4.0 99 102-211 38-141 (166)
20 cd04768 HTH_BmrR-like Helix-Tu 36.0 21 0.00046 26.8 1.4 55 75-145 3-57 (96)
21 KOG2200|consensus 35.9 69 0.0015 32.6 5.2 99 74-197 273-375 (674)
22 cd04784 HTH_CadR-PbrR Helix-Tu 35.5 28 0.0006 27.3 2.0 55 75-145 3-57 (127)
23 cd04772 HTH_TioE_rpt1 First He 34.9 36 0.00079 25.7 2.5 51 75-141 3-53 (99)
24 PRK13749 transcriptional regul 34.4 18 0.0004 28.9 0.8 41 75-131 6-46 (121)
25 cd04782 HTH_BltR Helix-Turn-He 33.9 29 0.00062 26.1 1.8 55 75-145 3-57 (97)
26 TIGR02054 MerD mercuric resist 33.2 29 0.00062 27.6 1.8 55 75-145 6-60 (120)
27 PF08609 Fes1: Nucleotide exch 30.8 54 0.0012 24.9 2.9 42 129-170 49-91 (92)
28 cd04770 HTH_HMRTR Helix-Turn-H 30.6 40 0.00086 26.1 2.1 55 75-145 3-57 (123)
29 cd04776 HTH_GnyR Helix-Turn-He 30.3 23 0.00049 27.8 0.7 36 107-145 20-55 (118)
30 cd04783 HTH_MerR1 Helix-Turn-H 29.9 30 0.00065 27.1 1.4 55 75-145 3-57 (126)
31 PRK03941 NTPase; Reviewed 28.8 30 0.00065 29.5 1.3 24 162-185 52-76 (174)
32 TIGR02047 CadR-PbrR Cd(II)/Pb( 28.1 37 0.0008 26.8 1.6 41 75-131 3-43 (127)
33 PF13143 DUF3986: Protein of u 27.5 41 0.00088 25.9 1.6 16 6-21 4-19 (88)
34 cd04781 HTH_MerR-like_sg6 Heli 27.2 32 0.00069 26.8 1.1 54 75-145 3-56 (120)
35 PRK03114 NTPase; Reviewed 27.0 24 0.00051 30.0 0.3 24 161-184 48-73 (169)
36 TIGR02043 ZntR Zn(II)-responsi 26.9 48 0.001 26.3 2.1 55 75-145 4-58 (131)
37 cd04785 HTH_CadR-PbrR-like Hel 26.3 49 0.0011 26.0 2.0 38 107-145 20-57 (126)
38 cd01111 HTH_MerD Helix-Turn-He 26.2 48 0.0011 25.5 1.9 37 108-145 21-57 (107)
39 KOG2414|consensus 25.8 1.9E+02 0.0042 28.4 6.2 51 34-85 332-386 (488)
40 PF10030 DUF2272: Uncharacteri 25.0 52 0.0011 28.3 2.0 25 25-49 127-151 (183)
41 PF11944 DUF3461: Protein of u 24.0 1.2E+02 0.0026 24.8 3.8 52 112-165 55-111 (125)
42 PF14771 DUF4476: Domain of un 23.7 97 0.0021 22.9 3.1 60 129-201 5-67 (95)
43 PF10438 Cyc-maltodext_C: Cycl 23.0 66 0.0014 23.8 2.0 25 13-38 12-37 (78)
44 PHA02892 hypothetical protein; 23.0 1.4E+02 0.0031 22.1 3.7 37 130-168 12-48 (75)
45 KOG2160|consensus 22.8 2.4E+02 0.0053 26.7 6.1 60 144-205 93-153 (342)
46 PF01931 NTPase_I-T: Protein o 22.5 42 0.00091 28.3 1.0 17 169-185 60-76 (168)
47 PRK05074 inosine/xanthosine tr 22.4 51 0.0011 28.1 1.5 23 161-183 56-81 (173)
48 cd01282 HTH_MerR-like_sg3 Heli 22.1 51 0.0011 25.4 1.3 54 75-145 3-56 (112)
49 cd03198 GST_C_CLIC GST_C famil 22.1 86 0.0019 25.3 2.7 19 36-54 3-21 (134)
50 PHA03056 putative myristoylate 22.0 1.2E+02 0.0027 25.2 3.6 46 123-169 55-108 (165)
51 PF07812 TfuA: TfuA-like prote 22.0 68 0.0015 26.0 2.0 38 116-154 69-107 (120)
52 TIGR00258 inosine/xanthosine t 21.9 47 0.001 28.0 1.2 22 163-184 50-73 (163)
53 PRK01170 phosphopantetheine ad 21.9 47 0.001 31.0 1.3 27 157-183 196-222 (322)
54 cd04775 HTH_Cfa-like Helix-Tur 21.7 57 0.0012 24.7 1.5 54 75-145 4-57 (102)
55 KOG1422|consensus 21.4 53 0.0011 29.2 1.4 45 34-79 95-139 (221)
56 PF08014 DUF1704: Domain of un 21.1 3.7E+02 0.008 25.3 7.0 82 121-203 14-96 (349)
57 COG3140 Uncharacterized protei 20.1 79 0.0017 22.5 1.8 17 147-163 9-25 (60)
No 1
>PF10228 DUF2228: Uncharacterised conserved protein (DUF2228); InterPro: IPR019361 This entry contains proteins that have no known function.
Probab=100.00 E-value=1.1e-91 Score=618.62 Aligned_cols=212 Identities=38% Similarity=0.642 Sum_probs=207.2
Q ss_pred CEEEecCCCceEEEEEecCCCCCceEEEecc-CCCceeeecCccHHHHHHHHHhhhhhcCCCCC-CchhHHHHHHHHHHH
Q psy14149 1 TIIVSTGKDHLHFGYFRDCPDEAPVFIASNS-NRDCKINPVAPNIFIFINEKLNEKVKSADLAS-SPSKVSSLQQKLTDF 78 (217)
Q Consensus 1 Ti~~~~~~~~~H~GY~RD~P~e~Pv~V~~n~-~~~c~i~~vG~nlF~Av~~~l~~~~k~~~~~~-~~~~~~~l~~~L~~~ 78 (217)
||++++++||+|||||||+|+++|+|||.|+ +++|+|+++|+|||+||++||++++|..++++ .++.+++|+++|+++
T Consensus 40 Ti~~~~~~~~~H~gY~RD~P~e~p~~V~~n~~~~~~~~~~vG~nlF~Av~~~l~~~~k~~~~~k~~~~~~~kl~~~L~~~ 119 (253)
T PF10228_consen 40 TIIVGDRGTGYHYGYWRDSPDEKPVFVVFNDAKKGCEITPVGDNLFAAVKHFLEKKLKETDDKKKKKSALKKLEEKLTEF 119 (253)
T ss_pred EEEEecCCCceEEEEEcCCCCCCCcEEEEEecccCCEEEEECccHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999 99999999999999999999999999877664 578999999999999
Q ss_pred HHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCCCChhhhhhhhhhH
Q psy14149 79 AHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPSVDTRGKLKIKSIL 158 (217)
Q Consensus 79 a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~~~~~~r~k~~~~l 158 (217)
|++++|||++ +++.||+|+|+|||+||||+|||||+|+||+|||||||+||++|++||++|++|+ ++++|++++++|
T Consensus 120 a~~~~~~l~~--~~~~~k~R~k~vV~ktfh~~GiVVP~d~k~~vGYR~L~~td~~Lk~il~~i~~a~-~~~~~~~~~~~l 196 (253)
T PF10228_consen 120 AKELGISLEQ--KTKKMKKRDKKVVAKTFHGAGIVVPVDRKNDVGYRELPETDAELKKILKKIVEAK-NDEERQKAFAPL 196 (253)
T ss_pred HHHcCCChhh--cchhHHhccCceeecccCCCeEEEeccCCCCcCceecCcccHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999998899999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhhhccCCcchhhhhhhhhccCCcchHHHHHHhHHHHHHhcCchhhhhh
Q psy14149 159 EEVSTWVTIAIDESDFGTGLEFGLDLFGSGIEDLHSMTKCTLGVAYQYLYRNEFDTI 215 (217)
Q Consensus 159 qel~t~v~iAnDEcDfG~GLELG~dLF~~g~~~f~~~a~~lL~~AY~lL~R~~fa~I 215 (217)
|||||+||||||||||||||||||||||+|+++||++|+|||++||+||+|++||+|
T Consensus 197 qel~t~v~~AnDEcDfG~gLELG~dLF~~g~~~f~~~~~~lL~~AY~lL~R~~F~~I 253 (253)
T PF10228_consen 197 QELVTFVQIANDECDFGMGLELGHDLFCYGSKYFHKVALQLLPMAYSLLKRPLFAEI 253 (253)
T ss_pred HHHHHHHHHHhccccCcchheecceeeecCchHHHHHHHHHHHHHHHHhCchhhccC
Confidence 999999999999999999999999999999999999999999999999999999998
No 2
>KOG3952|consensus
Probab=100.00 E-value=2.3e-64 Score=438.68 Aligned_cols=213 Identities=22% Similarity=0.241 Sum_probs=204.0
Q ss_pred CEEEecCCCceEEEEEecCCCCCceEEEecc-CCCceeeecCccHHHHHHHHHhhhhhcCCCCCCchhHHHHHHHHHHHH
Q psy14149 1 TIIVSTGKDHLHFGYFRDCPDEAPVFIASNS-NRDCKINPVAPNIFIFINEKLNEKVKSADLASSPSKVSSLQQKLTDFA 79 (217)
Q Consensus 1 Ti~~~~~~~~~H~GY~RD~P~e~Pv~V~~n~-~~~c~i~~vG~nlF~Av~~~l~~~~k~~~~~~~~~~~~~l~~~L~~~a 79 (217)
||++++++||+|+||+||+|++.|+++.+|. ...|.+.+.|+|+|.++..++.+.++....+.+....+.|.+++++.|
T Consensus 75 ~l~~~~~~~~~~l~~~~D~Pe~~~~~~~~~~~~~~~~~~PN~~~~~~~~~~l~t~~l~h~~~~~~~~~~k~ide~~t~aA 154 (304)
T KOG3952|consen 75 KLRGESDADGTDLIEMTDLPEMQTFMKCSHGRYAFWRDKPNDKKPVIVFMDLKTNELRHAILDFCTRCSKCIDESATKAA 154 (304)
T ss_pred eeecccCCCcceeEEeccCccccceeeeccccccceeeCCCCCCcEEEehHhhhchHHHHHHHhccCccccCChhhcccc
Confidence 5788899999999999999999999999999 999999999999999999999998888777766777889999999999
Q ss_pred HhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCCCChhhhhhhhhhHH
Q psy14149 80 HGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPSVDTRGKLKIKSILE 159 (217)
Q Consensus 80 ~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~~~~~~r~k~~~~lq 159 (217)
.+++.|+.+ .+.++++|+++++|.|+||+|+|||.++ +.+|||++++|+..|+.+|..+.+.. .+++|.++|+|||
T Consensus 155 ~~k~~s~~~--~s~k~~~~~~~~tt~t~~G~~lVvp~~k-~~~g~~~~~~t~~~lk~~l~t~~e~a-keqerlkaFapiq 230 (304)
T KOG3952|consen 155 NSKIQSFFT--PSKKSSEVKEEKTTITGPGLILVVPKNK-RTGGRDLSKNTYCILKEHLVTRLEQA-KEQERLKAFAPIQ 230 (304)
T ss_pred cccccceec--cccchHHHhhhheeeccCCceeeecccc-cccccccccchhHHHHHHHHHHHHHH-HHHHHHHhhhhHH
Confidence 999999999 9999999999999999999999999998 89999999999999999999888776 7889999999999
Q ss_pred HHHHHHHHhhhccCCcchhhhhhhhhccCCcchHHHHHHhHHHHHHhcCchhhhhhhC
Q psy14149 160 EVSTWVTIAIDESDFGTGLEFGLDLFGSGIEDLHSMTKCTLGVAYQYLYRNEFDTILE 217 (217)
Q Consensus 160 el~t~v~iAnDEcDfG~GLELG~dLF~~g~~~f~~~a~~lL~~AY~lL~R~~fa~Iie 217 (217)
||||+|||||||||||||||||||||||||||||++|.||||+||+||+|++||+|||
T Consensus 231 emMtfvqfaNdEcDyGmGLELGmdLFcygshyfhkva~qlLplAYnlLkrnlFAeIie 288 (304)
T KOG3952|consen 231 EMMTFVQFANDECDYGMGLELGMDLFCYGSHYFHKVAMQLLPLAYNLLKRNLFAEIIE 288 (304)
T ss_pred HHHHHHHHhccccccccchhhhhHHHhcccHHHHHHHHHHHHHHHHhhcHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996
No 3
>KOG3952|consensus
Probab=93.73 E-value=0.042 Score=49.28 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=39.6
Q ss_pred CEEEecCCCceEEEEEecCCCCC-ceEEEeccCCCceeeecCccHHHHHHHHHhhhhhcCCCCC
Q psy14149 1 TIIVSTGKDHLHFGYFRDCPDEA-PVFIASNSNRDCKINPVAPNIFIFINEKLNEKVKSADLAS 63 (217)
Q Consensus 1 Ti~~~~~~~~~H~GY~RD~P~e~-Pv~V~~n~~~~c~i~~vG~nlF~Av~~~l~~~~k~~~~~~ 63 (217)
|++++. .-+|.+|||.|+++ ||+|+..-.. +.|-+|+..++.+..|+.+.+.
T Consensus 98 ~~~~~~---~~~~~~~~~~PN~~~~~~~~~~l~t--------~~l~h~~~~~~~~~~k~ide~~ 150 (304)
T KOG3952|consen 98 TFMKCS---HGRYAFWRDKPNDKKPVIVFMDLKT--------NELRHAILDFCTRCSKCIDESA 150 (304)
T ss_pred ceeeec---cccccceeeCCCCCCcEEEehHhhh--------chHHHHHHHhccCccccCChhh
Confidence 455553 45699999999975 8999876533 5688999999999888876653
No 4
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=60.04 E-value=4.4 Score=31.52 Aligned_cols=38 Identities=8% Similarity=0.154 Sum_probs=28.2
Q ss_pred ccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 106 GLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 106 tfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
-+...|++.|... ++ |||-.+.+|-..=.+++.+.+..
T Consensus 19 yYe~~GLi~p~~~-~~-~yR~Y~~~d~~~l~~I~~lr~~G 56 (116)
T cd04769 19 LYEEKGLLPSPKR-SG-NYRVYDAQHVECLRFIKEARQLG 56 (116)
T ss_pred HHHHCCCCCCCCC-CC-CceeeCHHHHHHHHHHHHHHHcC
Confidence 3678899999866 66 99998877766655666666555
No 5
>PF12410 rpo30_N: Poxvirus DNA dependent RNA polymerase 30kDa subunit ; InterPro: IPR024394 All three classes of poxvirus genes - early, intermediate and late - are transcribed by the viral RNA polymerase compex []. This complex is composed of nine distinct subunits which total more than 500kDa in mass. The two largest subunits (147 and 136kDa) are homologous to the largest subunits of eukaryotic and prokaryotic RNA polymerases and, like them, are thought to form a claw-shaped structure whose cleft is the site of template interaction and phosphodiester bond formation. While the smaller subunits of poxvirus RNA polymerase show much less similarity, if any, to the smaller subunits of the eukaryotic and prokaryotic enzymes, it is thought that they may play a similar role in interacting with transcription factors. This entry represents the N-terminal domain of the 30kDa subunit of RNA polymerase from the chordopox branch of poxviruses [, ]. This subunit may have a role in RNA chain elongation. The function of this domain is not known, but it contains two conserved sequence motifs, GIEYSKD and LRY, and shows structural similarity to the eukaryotic transcriptional elongation factor SII.
Probab=57.14 E-value=19 Score=29.48 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=38.5
Q ss_pred cccccceeEecccCCCCCccc--cCCCCchHHHHHHHhhcCCCCChhhh
Q psy14149 105 KGLSGVGIVVPYVKKTELGYR--PLQKSDKDLETLFRQYKDPSVDTRGK 151 (217)
Q Consensus 105 ktfhg~GivVP~d~k~~vGYR--~L~~td~~Lkkil~~i~~a~~~~~~r 151 (217)
.|-|-+||=-.=|.||.+-|| |+-+|+.+-+.||..|..+ +..++
T Consensus 49 ~p~~NIGIEYSKD~KNkLSYRNKp~i~tn~eY~dlc~~Ir~T--nG~ek 95 (136)
T PF12410_consen 49 EPKNNIGIEYSKDAKNKLSYRNKPSIETNEEYKDLCDMIRST--NGTEK 95 (136)
T ss_pred CcccccceeecccccccccccCCcCCcccchHHHHHHHHHHc--cCchH
Confidence 467899999888999999999 8888999999999999966 34444
No 6
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=52.04 E-value=9.1 Score=30.72 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=27.4
Q ss_pred cccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 107 LSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 107 fhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
+...|++.|..+ ++.|||--+.+|-..-.+++.+....
T Consensus 20 YE~~GLl~p~~r-~~~gyR~Y~~~~v~~l~~I~~lr~~G 57 (131)
T cd04786 20 YEAEGLLSSVER-SANGYRDYPPETVWVLEIISSAQQAG 57 (131)
T ss_pred HHHCCCCCCCCc-CCCCCeecCHHHHHHHHHHHHHHHcC
Confidence 557799999765 77899998877766555555555555
No 7
>PHA02998 RNA polymerase subunit; Provisional
Probab=50.58 E-value=27 Score=30.37 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=38.5
Q ss_pred cccccceeEecccCCCCCccc--cCCCCchHHHHHHHhhcCCCCChhhh
Q psy14149 105 KGLSGVGIVVPYVKKTELGYR--PLQKSDKDLETLFRQYKDPSVDTRGK 151 (217)
Q Consensus 105 ktfhg~GivVP~d~k~~vGYR--~L~~td~~Lkkil~~i~~a~~~~~~r 151 (217)
.|-|-+||=-.=|.||.+-|| ||-+|+.+-+.||..|..+ +..++
T Consensus 56 ~~~~nigieyskd~knklsyrnkp~i~tn~~y~~lc~~ir~t--ng~ek 102 (195)
T PHA02998 56 EPKNNIGIEYSKDAKNKLSYRNKPSIETNLEYKDLCDMIRGT--NGTEK 102 (195)
T ss_pred ccccccceEecccccccccccCCcCCcccccHHHHHHHHHhc--CCchH
Confidence 467899999888989999999 8888999999999999966 34444
No 8
>COG0789 SoxR Predicted transcriptional regulators [Transcription]
Probab=47.53 E-value=11 Score=28.87 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=27.2
Q ss_pred cccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 107 LSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 107 fhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
+...|+++|... ++.|||.-++.|-....+++.+.+..
T Consensus 20 YE~~GLl~p~~~-~~~gyR~Ys~~dl~~l~~I~~~r~~G 57 (124)
T COG0789 20 YERKGLLSPERR-DEGGYRYYTPEDLELLQIIKTLRELG 57 (124)
T ss_pred HHHcCCCCCccc-CCCCceecCHHHHHHHHHHHHHHHcC
Confidence 457899999976 66899987777755555555555444
No 9
>PHA03044 IMV membrane protein; Provisional
Probab=44.36 E-value=39 Score=25.11 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=31.8
Q ss_pred chHHHHHHHhhcCCCCChhhhhhhhhhHHHHHHHHHH
Q psy14149 131 DKDLETLFRQYKDPSVDTRGKLKIKSILEEVSTWVTI 167 (217)
Q Consensus 131 d~~Lkkil~~i~~a~~~~~~r~k~~~~lqel~t~v~i 167 (217)
.+++-+||..+.+.. ++.+.-..++-++|||..|+.
T Consensus 8 Esn~~HlLt~Lsn~~-~d~efaAtls~ikElis~IN~ 43 (74)
T PHA03044 8 ESNFIHLLTNLSNNS-DDSEFSATLSTIKEIISQINL 43 (74)
T ss_pred HHHHHHHHHHHHcCC-CChhHHHHHHHHHHHHHHHHH
Confidence 468999999999886 788999999999999999875
No 10
>PF06015 Chordopox_A30L: Chordopoxvirus A30L protein; InterPro: IPR009257 This family consists of several short Chordopoxvirus proteins which are homologous to the A30L protein of Vaccinia virus. The vaccinia virus A30L protein is required for the association of electron-dense, granular, proteinaceous material with the concave surfaces of crescent membranes, an early step in viral morphogenesis. A30L is known to interact with the G7L protein and it has been shown that the stability of each is dependent on its association with the other [].
Probab=43.71 E-value=43 Score=24.78 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=32.0
Q ss_pred chHHHHHHHhhcCCCCChhhhhhhhhhHHHHHHHHHH
Q psy14149 131 DKDLETLFRQYKDPSVDTRGKLKIKSILEEVSTWVTI 167 (217)
Q Consensus 131 d~~Lkkil~~i~~a~~~~~~r~k~~~~lqel~t~v~i 167 (217)
.++|-+||..+.+.. ++.+.-...+-++|||..+++
T Consensus 6 E~n~~HlL~~Ls~~~-~d~e~~atls~i~eli~~IN~ 41 (71)
T PF06015_consen 6 ESNFIHLLTNLSNNK-DDSEFAATLSAIKELISQINL 41 (71)
T ss_pred HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHH
Confidence 468999999999887 789999999999999998875
No 11
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=41.31 E-value=23 Score=27.87 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=33.1
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
+.++|+..|+|.. | ++- +-..|++.|..+ ++.|||--++.+-.-=++++.+....
T Consensus 3 I~e~a~~~gvs~~----t--lRy---------Ye~~GLl~p~~r-~~~gyR~Y~~~~l~~l~~I~~lr~~G 57 (127)
T TIGR02044 3 IGQVAKLTGLSSK----M--IRY---------YEEKGLIPPPLR-SEGGYRTYTQQHLDELRLISRARQVG 57 (127)
T ss_pred HHHHHHHHCcCHH----H--HHH---------HHHCCCCCCCCc-CCCCCeecCHHHHHHHHHHHHHHHCC
Confidence 4567777776553 2 222 446699999865 78899987666543333344444444
No 12
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=40.13 E-value=19 Score=29.04 Aligned_cols=42 Identities=29% Similarity=0.421 Sum_probs=28.3
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCch
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDK 132 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~ 132 (217)
..++|+..|+|.. | ++ -+...|++.|..+ ++.|||--+..+-
T Consensus 4 I~e~a~~~gvs~~----t--lR---------~Ye~~GLl~p~~r-~~~gyR~Y~~~~l 45 (140)
T PRK09514 4 IGELAKLAEVTPD----T--LR---------FYEKQGLMDPEVR-TEGGYRLYTEQDL 45 (140)
T ss_pred HHHHHHHHCcCHH----H--HH---------HHHHCCCCCCccc-CCCCCeeeCHHHH
Confidence 4577777776553 2 22 2557799999765 7889998666553
No 13
>PF14096 DUF4274: Domain of unknown function (DUF4274)
Probab=40.01 E-value=13 Score=27.00 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=18.7
Q ss_pred HHHHHHHhhhccCCcchhhhhhhhhccCCcch
Q psy14149 161 VSTWVTIAIDESDFGTGLEFGLDLFGSGIEDL 192 (217)
Q Consensus 161 l~t~v~iAnDEcDfG~GLELG~dLF~~g~~~f 192 (217)
++.+| +.+-.||.|++|.+ |..+.+..
T Consensus 22 v~~~i-l~~p~CD~~TAL~~----fw~~~p~~ 48 (77)
T PF14096_consen 22 VPKWI-LEHPKCDLATALLI----FWLADPDY 48 (77)
T ss_pred HHHHH-HcCCcccHHHHHHH----HHhcCcHH
Confidence 34444 67889999999975 66665543
No 14
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=39.82 E-value=17 Score=29.37 Aligned_cols=41 Identities=22% Similarity=0.422 Sum_probs=27.4
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCc
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSD 131 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td 131 (217)
+.+.|+..|+|.. | + +-+...|++.|..+ ++.|||.-++.+
T Consensus 3 Ige~a~~~gvs~~----t--l---------RyYE~~GLl~p~~r-~~~gyR~Y~~~~ 43 (135)
T PRK10227 3 ISDVAKITGLTSK----A--I---------RFYEEKGLVTPPMR-SENGYRTYTQQH 43 (135)
T ss_pred HHHHHHHHCcCHH----H--H---------HHHHHCCCCCCccc-CCCCcccCCHHH
Confidence 4566667766553 2 1 12567899999865 789999866655
No 15
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=37.63 E-value=21 Score=29.07 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=32.2
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDP 144 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a 144 (217)
..+.|+..|+|.. | ++ -+-..|++.|..+ ++.|||.-++.+-..=++++.+.+.
T Consensus 10 IgevAk~~Gvs~~----T--LR---------yYE~~GLl~p~~r-~~~gyR~Y~~~~l~rl~~I~~lr~~ 63 (144)
T PRK13752 10 IGVFAKAAGVNVE----T--IR---------FYQRKGLLPEPDK-PYGSIRRYGEADVTRVRFVKSAQRL 63 (144)
T ss_pred HHHHHHHHCcCHH----H--HH---------HHHHCCCCCCCcc-CCCCCeecCHHHHHHHHHHHHHHHc
Confidence 5677777776653 2 11 2346799988765 7889998766654333333333333
No 16
>PF12467 CMV_1a: Cucumber mosaic virus 1a protein family; InterPro: IPR021002 Replication protein 1a is a core component of the viral replicase complex in Cucumber mosaic virus and related plant viruses. It is also the major virulence factor in these organisms. This entry represents a domain within replication protein 1a that appears to determine the necrotic phenotype of the virus. Conversion of a single arginine residue within this region (Arg461) to cysteine is sufficient to convert a non-necrotic strain to a necrotic type, and vice versa []. Deletion of residue 461 leads to a loss of replicase activity in the 1a protein.; GO: 0008168 methyltransferase activity, 0016817 hydrolase activity, acting on acid anhydrides
Probab=37.46 E-value=33 Score=29.47 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHhhhccCCcchhhhhhhhhccCCcc
Q psy14149 155 KSILEEVSTWVTIAIDESDFGTGLEFGLDLFGSGIED 191 (217)
Q Consensus 155 ~~~lqel~t~v~iAnDEcDfG~GLELG~dLF~~g~~~ 191 (217)
.+-|--|.|++.| ||||-+-||.++ |.|+.....
T Consensus 31 ~eFL~KLSt~~tF-nE~~svd~~~~~--dv~s~aa~v 64 (174)
T PF12467_consen 31 KEFLVKLSTFVTF-NEECSVDMGELW--DVFSSAADV 64 (174)
T ss_pred HHHHHHHhhHhhh-hhhcCCcchhhH--HHHhhhHHH
Confidence 3566678899999 999999999998 999866543
No 17
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=37.15 E-value=26 Score=27.57 Aligned_cols=55 Identities=18% Similarity=0.342 Sum_probs=32.8
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
..++|+..|+|.. | ++ -+...|++.|..+ ++-|||--++.|-+-=++++.+.+..
T Consensus 3 I~e~a~~~gvs~~----t--lR---------yYe~~GLl~~~~r-~~~g~R~Y~~~~~~~l~~I~~lr~~G 57 (127)
T cd01108 3 IGEAAKLTGLSAK----M--IR---------YYEEIGLIPPPSR-SDNGYRVYNQRDIEELRFIRRARDLG 57 (127)
T ss_pred HHHHHHHHCcCHH----H--HH---------HHHHCCCCCCCCc-CCCCceecCHHHHHHHHHHHHHHHcC
Confidence 4567777776553 2 22 2446699998765 78899987666544333334334443
No 18
>COG3612 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.86 E-value=45 Score=28.07 Aligned_cols=61 Identities=7% Similarity=0.129 Sum_probs=43.2
Q ss_pred cccccccccceeEecccCCCCCccccC-CCCchHHHHHHHhhcCCCCChhhhhhhhhhHHHHHH
Q psy14149 101 KTVCKGLSGVGIVVPYVKKTELGYRPL-QKSDKDLETLFRQYKDPSVDTRGKLKIKSILEEVST 163 (217)
Q Consensus 101 ~vV~ktfhg~GivVP~d~k~~vGYR~L-~~td~~Lkkil~~i~~a~~~~~~r~k~~~~lqel~t 163 (217)
--+++||.--|++||.|.+-+-+.=.+ +...+.+.+||..+.-+. .-.|+.+.+.+.+++.
T Consensus 59 ~~~~p~Fd~~~V~lP~df~pd~~~l~srsk~~~~~driLDa~aA~g--~~~rqe~Va~vn~~qe 120 (157)
T COG3612 59 GRLAPTFDTSGVELPLDFKPDESFLFSRSKDKPSFDRILDAAAASG--KLDRQEAVAEVNSLQE 120 (157)
T ss_pred cccCCCCCCCceecccCCCCCHHHHHhccCCcchHHHHHHHHHHhc--CccHHHHHHHHHHHHH
Confidence 457899999999999998777666555 334468899999988553 5555555555555544
No 19
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=36.38 E-value=55 Score=27.94 Aligned_cols=99 Identities=18% Similarity=0.181 Sum_probs=60.6
Q ss_pred ccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCCCChhhhhhhhhhHHHHHHHHHHhhhc----cCCcch
Q psy14149 102 TVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPSVDTRGKLKIKSILEEVSTWVTIAIDE----SDFGTG 177 (217)
Q Consensus 102 vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~~~~~~r~k~~~~lqel~t~v~iAnDE----cDfG~G 177 (217)
|+--++++|=+.||+++-.++|-|++..- .+|+.+++.+..-+ ++..++-. .-.-.|+| +|-=-+
T Consensus 38 VI~f~~~dm~v~VP~~ka~~~GiR~v~~~-~~l~~~~~vlq~~~-~e~~~~ws---------~R~k~~~~klksGdi~~~ 106 (166)
T COG1329 38 VIDFPQSDMTVMVPVAKADSVGLRPVVDQ-EELDRALQVLQGGE-REKPTMWS---------RRYKENEEKLKSGDIIDI 106 (166)
T ss_pred EEEEcCCCcEEEeeccchhhcCChhhhhh-HHHHHHHHHHhccC-ccccccHH---------HHHHHHHHHhccCChhHH
Confidence 45556677778899998778999998444 48999999998654 32222211 00011222 222233
Q ss_pred hhhhhhhh-ccCCcchHHHHHHhHHHHHHhcCchh
Q psy14149 178 LEFGLDLF-GSGIEDLHSMTKCTLGVAYQYLYRNE 211 (217)
Q Consensus 178 LELG~dLF-~~g~~~f~~~a~~lL~~AY~lL~R~~ 211 (217)
=|+=-||+ ....+.++--=+++|.-||+.|.++.
T Consensus 107 AevvrdL~r~~~qr~l~~~Er~ll~~A~~~l~~El 141 (166)
T COG1329 107 AEVVRDLYRRDKQRELSYSERRLLEKALQILAGEL 141 (166)
T ss_pred HHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 34444555 23344566667889999999887764
No 20
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=35.95 E-value=21 Score=26.77 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=33.2
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
..+.|+..|++.. | ++ -+...|++.|... ++-|||--+..|-.-=.+++.+.++.
T Consensus 3 i~eva~~~gvs~~----t--LR---------yye~~Gll~p~~~-~~~gyR~Y~~~~l~~l~~I~~lr~~G 57 (96)
T cd04768 3 IGEFAKLAGVSIR----T--LR---------HYDDIGLFKPAKI-AENGYRYYSYAQLYQLQFILFLRELG 57 (96)
T ss_pred HHHHHHHHCcCHH----H--HH---------HHHHCCCCCCCcc-CCCCeeeCCHHHHHHHHHHHHHHHcC
Confidence 3566667766543 2 22 2456799999855 66799986655544334444555554
No 21
>KOG2200|consensus
Probab=35.94 E-value=69 Score=32.62 Aligned_cols=99 Identities=23% Similarity=0.347 Sum_probs=59.9
Q ss_pred HHHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccc-cCCCCchHHHHHHHhhcCCCCChhh--
Q psy14149 74 KLTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYR-PLQKSDKDLETLFRQYKDPSVDTRG-- 150 (217)
Q Consensus 74 ~L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR-~L~~td~~Lkkil~~i~~a~~~~~~-- 150 (217)
.|+.+...+++++.+ ++.++++.|+.. .-|.++-|-++ ..||+ |+ .|.+.++.+++...+.+-
T Consensus 273 eLTA~~d~~~~~lK~-kr~kk~d~kd~~-----vFGVPL~vll~---rtG~~lP~-----~iQq~m~~lr~~~Le~vGif 338 (674)
T KOG2200|consen 273 ELTALMDILGIQLKR-KRAKKVDGKDGG-----VFGVPLTVLLQ---RTGQPLPL-----SIQQAMRYLRERGLETVGIF 338 (674)
T ss_pred HHHHHHHHhCchhhh-hcccCCccCCCc-----eeecCceeeec---cCCCcCcH-----HHHHHHHHHHHhCcccccee
Confidence 488999999988764 334444444443 33666666665 47787 44 677888888754312111
Q ss_pred -hhhhhhhHHHHHHHHHHhhhccCCcchhhhhhhhhccCCcchHHHHH
Q psy14149 151 -KLKIKSILEEVSTWVTIAIDESDFGTGLEFGLDLFGSGIEDLHSMTK 197 (217)
Q Consensus 151 -r~k~~~~lqel~t~v~iAnDEcDfG~GLELG~dLF~~g~~~f~~~a~ 197 (217)
+--+-+.|++|=. .=|.+|+.| .|++-+.+-|++|-
T Consensus 339 RksGvksRIk~Lrq-----~lE~~~~~~------~~~~d~~~~~DvAd 375 (674)
T KOG2200|consen 339 RKSGVKSRIKNLRQ-----MLEAKFYNG------EFNWDSQSAHDVAD 375 (674)
T ss_pred ecccHHHHHHHHHH-----HHhhcccCc------ccccchhhhhHHHH
Confidence 1112344554433 237788887 78888877777765
No 22
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=35.47 E-value=28 Score=27.29 Aligned_cols=55 Identities=11% Similarity=0.248 Sum_probs=33.4
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
..++|+..|+|.. | ++- +-..|+++|..+ ++.|||.-++.|-.--+.++.+.+..
T Consensus 3 IgevA~~~gvs~~----t--LRy---------Ye~~GLl~p~~r-~~~gyR~Y~~~~l~~l~~I~~lr~~G 57 (127)
T cd04784 3 IGELAKKTGCSVE----T--IRY---------YEKEGLLPAPAR-SANNYRLYDEEHLERLLFIRRCRSLD 57 (127)
T ss_pred HHHHHHHHCcCHH----H--HHH---------HHHCCCCCCCCc-CCCCCeecCHHHHHHHHHHHHHHHcC
Confidence 4567777776543 2 222 446799998765 78899987666544334444444444
No 23
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=34.91 E-value=36 Score=25.74 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=32.7
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhh
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQY 141 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i 141 (217)
..++|+..|+|.. | ++- +...|++.|..+ ++.|||--++.|-+-=++++++
T Consensus 3 i~e~A~~~gvs~~----t--lR~---------Ye~~Gll~~~~r-~~~g~R~Y~~~~v~~l~~I~~l 53 (99)
T cd04772 3 TVDLARAIGLSPQ----T--VRN---------YESLGLIPPAER-TANGYRIYTDKHIAALRAYRAL 53 (99)
T ss_pred HHHHHHHHCcCHH----H--HHH---------HHHcCCCCCCCc-CCCCCeecCHHHHHHHHHHHHH
Confidence 4677888877663 2 222 456799988755 7789998666654444444444
No 24
>PRK13749 transcriptional regulator MerD; Provisional
Probab=34.41 E-value=18 Score=28.90 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=28.2
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCc
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSD 131 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td 131 (217)
..+.|+..|+|.. | + +-+...|++.|..+ ++-|||--++.+
T Consensus 6 IgelA~~~gvS~~----t--i---------R~YE~~GLl~p~~r-~~~gyR~Y~~~~ 46 (121)
T PRK13749 6 VSRLALDAGVSVH----I--V---------RDYLLRGLLRPVAC-TTGGYGLFDDAA 46 (121)
T ss_pred HHHHHHHHCCCHH----H--H---------HHHHHCCCCCCCCc-CCCCCccCCHHH
Confidence 4567777777663 2 1 12557799999976 789999865554
No 25
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=33.91 E-value=29 Score=26.11 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=33.4
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
..+.|+..|+|... ++- +-..|++.|... ++.|||--++.|-.-=..++.+.+..
T Consensus 3 i~eva~~~gvs~~t------lR~---------ye~~Gll~p~~~-~~~gyR~Y~~~~~~~l~~I~~lr~~G 57 (97)
T cd04782 3 TGEFAKLCGISKQT------LFH---------YDKIGLFKPEIV-KENGYRYYTLEQFEQLDIILLLKELG 57 (97)
T ss_pred HHHHHHHHCcCHHH------HHH---------HHHCCCCCCCcc-CCCCCccCCHHHHHHHHHHHHHHHcC
Confidence 35667777765532 222 346799999754 67899987666643333444455554
No 26
>TIGR02054 MerD mercuric resistence transcriptional repressor protein MerD. This model represents a transcriptional repressor protein of the MerR family (pfam00376) whose expression is regulated by the mercury-sensitive transcriptional activator, MerR. MerD has been shown to repress the transcription of the mer operon.
Probab=33.25 E-value=29 Score=27.64 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=34.6
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
..+.|+..|+|.. |- + -+-..|++.|... ++.|||.-+..+-.-=++++.+....
T Consensus 6 I~elA~~~gvs~~----tl--R---------~Ye~~GLL~p~~r-~~~gyR~Y~~~~l~rL~~I~~lr~~G 60 (120)
T TIGR02054 6 ISRLAEDAGVSVH----VV--R---------DYLLRGLLHPVRR-TTSGYGIFDDASLQRLRFVRAAFEAG 60 (120)
T ss_pred HHHHHHHHCcCHH----HH--H---------HHHHCCCCCCCcc-CCCCCeeCCHHHHHHHHHHHHHHHcC
Confidence 4566777776653 21 1 2446699999866 78999987666644444455555444
No 27
>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].
Probab=30.83 E-value=54 Score=24.91 Aligned_cols=42 Identities=29% Similarity=0.279 Sum_probs=31.5
Q ss_pred CCchHHHHH-HHhhcCCCCChhhhhhhhhhHHHHHHHHHHhhh
Q psy14149 129 KSDKDLETL-FRQYKDPSVDTRGKLKIKSILEEVSTWVTIAID 170 (217)
Q Consensus 129 ~td~~Lkki-l~~i~~a~~~~~~r~k~~~~lqel~t~v~iAnD 170 (217)
.+|+++-|. +..|.+..++.+.|.-+|+.|+++|--+--|||
T Consensus 49 ~sda~lMK~a~~vl~~~~~t~edk~~Ald~le~LVE~IDNANn 91 (92)
T PF08609_consen 49 PSDAELMKEAMEVLEDPEVTLEDKLIALDNLEELVENIDNANN 91 (92)
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHccccccc
Confidence 556665554 455555555699999999999999998877776
No 28
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.65 E-value=40 Score=26.10 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=34.6
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
..+.|+..|++.. | ++ -+...|++.|..+ ++.|||--++.+-..-.+++.+.+..
T Consensus 3 I~eva~~~gvs~~----t--LR---------yYe~~GLl~p~~r-~~~gyR~Y~~~~i~~l~~I~~lr~~G 57 (123)
T cd04770 3 IGELAKAAGVSPD----T--IR---------YYERIGLLPPPQR-SENGYRLYGEADLARLRFIRRAQALG 57 (123)
T ss_pred HHHHHHHHCcCHH----H--HH---------HHHHCCCCCCCCC-CCCCCccCCHHHHHHHHHHHHHHHCC
Confidence 4567777776553 2 22 2667899998866 77899987666544444444445444
No 29
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=30.28 E-value=23 Score=27.77 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=21.6
Q ss_pred cccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 107 LSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 107 fhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
+...|++.|. + ++ |||--+..+-+-=..+..+.+..
T Consensus 20 Ye~~GLl~p~-r-~~-gyR~Y~~~~l~~l~~I~~lr~~G 55 (118)
T cd04776 20 YEDKGLLSPE-R-RG-QTRVYSRRDRARLKLILRGKRLG 55 (118)
T ss_pred HHHCCCCCCc-C-CC-CccccCHHHHHHHHHHHHHHHCC
Confidence 5578999994 4 55 99986555533333334444444
No 30
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=29.86 E-value=30 Score=27.11 Aligned_cols=55 Identities=11% Similarity=0.269 Sum_probs=33.4
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
..++|+..|+|.. | + +-+...|++.|..+ ++-|||.-++.+-.--+++..+.+..
T Consensus 3 I~e~a~~~gvs~~----t--l---------R~Ye~~GLl~~~~r-~~~gyR~Y~~~~l~~l~~I~~lr~~G 57 (126)
T cd04783 3 IGELAKAAGVNVE----T--I---------RYYQRRGLLPEPPR-PEGGYRRYPEETVTRLRFIKRAQELG 57 (126)
T ss_pred HHHHHHHHCcCHH----H--H---------HHHHHCCCCCCCCc-CCCCCeecCHHHHHHHHHHHHHHHcC
Confidence 4567777776553 2 2 23668899997655 67899987665544333333444443
No 31
>PRK03941 NTPase; Reviewed
Probab=28.83 E-value=30 Score=29.51 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=17.1
Q ss_pred HHHHHHhhh-ccCCcchhhhhhhhh
Q psy14149 162 STWVTIAID-ESDFGTGLEFGLDLF 185 (217)
Q Consensus 162 ~t~v~iAnD-EcDfG~GLELG~dLF 185 (217)
+++|.-|-+ +||||-|+|=|++-|
T Consensus 52 ~nRA~~A~~~~ad~gVGiEgGv~~~ 76 (174)
T PRK03941 52 INRAKNAYSPDFDFSVGIEAGLFRV 76 (174)
T ss_pred HHHHHHHHhcCCCEEEEEeeeEeec
Confidence 344444444 799999999999744
No 32
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=28.06 E-value=37 Score=26.84 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=26.3
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCc
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSD 131 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td 131 (217)
+.++|+..|+|.. | ++ -+...|++.|..+ ++.|||--+.++
T Consensus 3 I~e~a~~~gvs~~----t--lR---------~Ye~~GLl~~~~r-~~~gyR~Y~~~~ 43 (127)
T TIGR02047 3 IGELAQKTGVSVE----T--IR---------FYEKQGLLPPPAR-TDNNYRVYTVGH 43 (127)
T ss_pred HHHHHHHHCcCHH----H--HH---------HHHHCCCCCCCCc-CCCCCCcCCHHH
Confidence 4566777766542 2 11 2556799987655 678999876655
No 33
>PF13143 DUF3986: Protein of unknown function (DUF3986)
Probab=27.45 E-value=41 Score=25.87 Aligned_cols=16 Identities=44% Similarity=0.895 Sum_probs=13.3
Q ss_pred cCCCceEEEEEecCCC
Q psy14149 6 TGKDHLHFGYFRDCPD 21 (217)
Q Consensus 6 ~~~~~~H~GY~RD~P~ 21 (217)
|..-++|+|||.|.-+
T Consensus 4 D~~~HlHigYyed~~D 19 (88)
T PF13143_consen 4 DDNQHLHIGYYEDGYD 19 (88)
T ss_pred CcccEEEeeeecCCcc
Confidence 4567899999999877
No 34
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=27.22 E-value=32 Score=26.78 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=34.0
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
..++|+..|+|.. | ++ -+...|++.|..+ ++ |||--++.+-+.=.+++.+.+..
T Consensus 3 IgevA~~~gvs~~----t--lR---------yYe~~GLl~p~~~-~~-gyR~Y~~~~l~~l~~I~~lr~~G 56 (120)
T cd04781 3 IAEVARQSGLPAS----T--LR---------YYEEKGLIASIGR-RG-LRRQYDPQVLDRLALIALGRAAG 56 (120)
T ss_pred HHHHHHHHCcCHH----H--HH---------HHHHCCCCCCCcC-CC-CceecCHHHHHHHHHHHHHHHcC
Confidence 4567777776553 2 22 2456799999765 44 99997776655444555555554
No 35
>PRK03114 NTPase; Reviewed
Probab=26.98 E-value=24 Score=30.01 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=16.4
Q ss_pred HHHHHHHhhh--ccCCcchhhhhhhh
Q psy14149 161 VSTWVTIAID--ESDFGTGLEFGLDL 184 (217)
Q Consensus 161 l~t~v~iAnD--EcDfG~GLELG~dL 184 (217)
-+++|.-|-+ +||||-|+|=|++-
T Consensus 48 A~nRA~~A~~~~~aD~~VGiEgGv~~ 73 (169)
T PRK03114 48 AINRAKRALEEGEADIGIGLEGGVMK 73 (169)
T ss_pred HHHHHHHHHhccCCCEEEEEeeeEee
Confidence 3344444444 49999999999963
No 36
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=26.91 E-value=48 Score=26.31 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=34.0
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
+.++|+..|+|.. | ++ -+...|++.|..+ ++.|||--++.|-.--..++.+.+..
T Consensus 4 I~e~a~~~gvs~~----t--lR---------~Ye~~GLl~p~~r-~~~gyR~Y~~~~l~~l~~I~~lr~~G 58 (131)
T TIGR02043 4 IGELAKLCGVTSD----T--LR---------FYEKNGLIKPAGR-TDSGYRLYTDEDQKRLRFILKAKELG 58 (131)
T ss_pred HHHHHHHHCcCHH----H--HH---------HHHHCCCCCCCCc-CCCCceecCHHHHHHHHHHHHHHHcC
Confidence 4567777776553 2 11 2456799999865 78999987666644333444444444
No 37
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=26.25 E-value=49 Score=25.97 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=24.7
Q ss_pred cccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 107 LSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 107 fhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
+...|++.|..+ ++.|||--+.++-..=.+++.+.+..
T Consensus 20 Ye~~Gll~~~~r-~~~g~R~Y~~~~l~~l~~I~~lr~~G 57 (126)
T cd04785 20 YESIGLLPEPAR-TAGGYRLYGAAHVERLRFIRRARDLG 57 (126)
T ss_pred HHHCCCCCCCCc-CCCCccccCHHHHHHHHHHHHHHHCC
Confidence 456799988755 67899987666644444444455444
No 38
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=26.23 E-value=48 Score=25.53 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=23.5
Q ss_pred ccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 108 SGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 108 hg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
-..|++.|..+ ++-|||--++.|-.-=...+.+.+..
T Consensus 21 e~~GLl~p~~r-~~~g~R~Y~~~~l~~l~~I~~lr~~G 57 (107)
T cd01111 21 LLRGLLHPVAR-TEGGYGLFDDCALQRLRFVRAAFEAG 57 (107)
T ss_pred HHCCCCCCCCc-CCCCCeecCHHHHHHHHHHHHHHHcC
Confidence 35699999865 77899987666533333344444444
No 39
>KOG2414|consensus
Probab=25.77 E-value=1.9e+02 Score=28.37 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=35.4
Q ss_pred CceeeecCccHHHHHHHHHhhhhhcCCCCCCchhHHHH----HHHHHHHHHhCCCc
Q psy14149 34 DCKINPVAPNIFIFINEKLNEKVKSADLASSPSKVSSL----QQKLTDFAHGHKID 85 (217)
Q Consensus 34 ~c~i~~vG~nlF~Av~~~l~~~~k~~~~~~~~~~~~~l----~~~L~~~a~~~~~~ 85 (217)
++.|+-+=..||.||...=.+++|..-+.++.+ ++.| .+.|.+.-++.||-
T Consensus 332 sGkFs~~Qr~LYeavL~vq~ecik~c~~~~g~s-L~~l~~~s~~Ll~~~Lk~lGI~ 386 (488)
T KOG2414|consen 332 SGKFSDAQRDLYEAVLQVQEECIKYCKPSNGTS-LSQLFERSNELLGQELKELGIR 386 (488)
T ss_pred CCccCcHHHHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHHHHHhCcc
Confidence 467788888999999877777777665544333 4444 44677888888853
No 40
>PF10030 DUF2272: Uncharacterized protein conserved in bacteria (DUF2272); InterPro: IPR019262 This is a domain of unknown function found in proteins of unknown function.
Probab=25.02 E-value=52 Score=28.28 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=19.4
Q ss_pred eEEEeccCCCceeeecCccHHHHHH
Q psy14149 25 VFIASNSNRDCKINPVAPNIFIFIN 49 (217)
Q Consensus 25 v~V~~n~~~~c~i~~vG~nlF~Av~ 49 (217)
++|+.|...+-+++.||.|++.+|.
T Consensus 127 IVVa~~~~d~~~v~~IGGNv~~sV~ 151 (183)
T PF10030_consen 127 IVVAVNVVDGRTVTTIGGNVRDSVS 151 (183)
T ss_pred EEEeeccCCCCEEEEEcCcccCeEE
Confidence 5555566555899999999998884
No 41
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=23.98 E-value=1.2e+02 Score=24.77 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=35.7
Q ss_pred eEecccCCCCCccccCCCCchHHHHHHHhhc-----CCCCChhhhhhhhhhHHHHHHHH
Q psy14149 112 IVVPYVKKTELGYRPLQKSDKDLETLFRQYK-----DPSVDTRGKLKIKSILEEVSTWV 165 (217)
Q Consensus 112 ivVP~d~k~~vGYR~L~~td~~Lkkil~~i~-----~a~~~~~~r~k~~~~lqel~t~v 165 (217)
=-|++|. +.-+||+..|-.+.|...+..+. +.. ..+.+.+.++.|.-|=..|
T Consensus 55 K~v~~d~-g~~~y~~v~Eis~~L~~vieELdqi~~~~~~-~~d~K~kiL~dL~HLE~Vv 111 (125)
T PF11944_consen 55 KTVLVDS-GSQQYKEVSEISPNLRYVIEELDQITGREQA-EVDLKQKILDDLRHLEKVV 111 (125)
T ss_pred ceeeecC-CCccceehhhccHHHHHHHHHHHHHHcchhh-hHHHHHHHHHHHHHHHHHH
Confidence 3466776 67899999999988877766553 222 3567777777777655444
No 42
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=23.69 E-value=97 Score=22.94 Aligned_cols=60 Identities=27% Similarity=0.282 Sum_probs=40.7
Q ss_pred CCchHHHHHHHhhcCCCCChhhhhhhhhhHHHH---HHHHHHhhhccCCcchhhhhhhhhccCCcchHHHHHHhHH
Q psy14149 129 KSDKDLETLFRQYKDPSVDTRGKLKIKSILEEV---STWVTIAIDESDFGTGLEFGLDLFGSGIEDLHSMTKCTLG 201 (217)
Q Consensus 129 ~td~~Lkkil~~i~~a~~~~~~r~k~~~~lqel---~t~v~iAnDEcDfG~GLELG~dLF~~g~~~f~~~a~~lL~ 201 (217)
.++.+.+.++..+.... .++.|+++++.+..- +|..|++. + +.+|.+.+..+ ++++.+-|
T Consensus 5 m~~~~f~~~~~~lk~~~-fd~dkl~~l~~~~~~~~~~T~~Qv~~----------i-l~~f~fd~~kl-~~lk~l~p 67 (95)
T PF14771_consen 5 MSDNDFEQFLEQLKKES-FDSDKLKVLEAAAKTNNCFTCAQVKQ----------I-LSLFSFDNDKL-KALKLLYP 67 (95)
T ss_pred CCHHHHHHHHHHHHcCC-CcHHHHHHHHHHHhcCCceeHHHHHH----------H-HHHcCCCHHHH-HHHHHHhh
Confidence 56778999999999887 899999888877543 66666543 1 35666666544 33443333
No 43
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=23.04 E-value=66 Score=23.82 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=16.9
Q ss_pred EEEEecCCCCCceEEEecc-CCCceee
Q psy14149 13 FGYFRDCPDEAPVFIASNS-NRDCKIN 38 (217)
Q Consensus 13 ~GY~RD~P~e~Pv~V~~n~-~~~c~i~ 38 (217)
|.||| ..++.-|+|+.|- .+...+.
T Consensus 12 YvYfR-~~~~~tVmVilN~n~~~~~ld 37 (78)
T PF10438_consen 12 YVYFR-YYDGKTVMVILNKNDKEQTLD 37 (78)
T ss_dssp EEEEE-EESSEEEEEEEE-SSS-EEEE
T ss_pred EEEEE-EcCCCEEEEEEcCCCCCeEEc
Confidence 89999 5566789999998 4444443
No 44
>PHA02892 hypothetical protein; Provisional
Probab=22.96 E-value=1.4e+02 Score=22.14 Aligned_cols=37 Identities=5% Similarity=0.141 Sum_probs=31.3
Q ss_pred CchHHHHHHHhhcCCCCChhhhhhhhhhHHHHHHHHHHh
Q psy14149 130 SDKDLETLFRQYKDPSVDTRGKLKIKSILEEVSTWVTIA 168 (217)
Q Consensus 130 td~~Lkkil~~i~~a~~~~~~r~k~~~~lqel~t~v~iA 168 (217)
..+++-+||..+.+.. +.+.-.-++-++||+.-+++-
T Consensus 12 nEsNf~HLL~~Lsn~~--D~efsATls~vkElIs~IN~K 48 (75)
T PHA02892 12 NEDSINHMLSTLANVK--DPEFSASISLMQEIIKIINSK 48 (75)
T ss_pred hHHHHHHHHHHHccCC--CchHHHHHHHHHHHHHHHHHH
Confidence 3468999999999986 788888899999999988753
No 45
>KOG2160|consensus
Probab=22.79 E-value=2.4e+02 Score=26.66 Aligned_cols=60 Identities=25% Similarity=0.228 Sum_probs=49.6
Q ss_pred CCCChhhhhhhhhhHHHHHHHHHHhhhccCCc-chhhhhhhhhccCCcchHHHHHHhHHHHHH
Q psy14149 144 PSVDTRGKLKIKSILEEVSTWVTIAIDESDFG-TGLEFGLDLFGSGIEDLHSMTKCTLGVAYQ 205 (217)
Q Consensus 144 a~~~~~~r~k~~~~lqel~t~v~iAnDEcDfG-~GLELG~dLF~~g~~~f~~~a~~lL~~AY~ 205 (217)
..++.+++.-+++.|++++.-+-=|||=|.+| +-.-|| ..-+....+...|...+.+|-+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~--~l~~~~~~lR~~Aa~Vigt~~q 153 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG--YLENSDAELRELAARVIGTAVQ 153 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH--HhcCCcHHHHHHHHHHHHHHHh
Confidence 33469999999999999999999999999995 555555 6677777899999999888754
No 46
>PF01931 NTPase_I-T: Protein of unknown function DUF84; InterPro: IPR002786 This is a family of prokaryotic proteins of unknown function.; PDB: 1U5W_E 1ZNO_B 1ZWY_D 1U14_A.
Probab=22.46 E-value=42 Score=28.34 Aligned_cols=17 Identities=35% Similarity=0.802 Sum_probs=13.2
Q ss_pred hhccCCcchhhhhhhhh
Q psy14149 169 IDESDFGTGLEFGLDLF 185 (217)
Q Consensus 169 nDEcDfG~GLELG~dLF 185 (217)
.++||||-|||=|+.-+
T Consensus 60 ~~~ad~gVGlEgGv~~~ 76 (168)
T PF01931_consen 60 VPDADYGVGLEGGVEEI 76 (168)
T ss_dssp STTSSEEEEEEEEEE--
T ss_pred CCCCCEEEEEccceeec
Confidence 35799999999999754
No 47
>PRK05074 inosine/xanthosine triphosphatase; Reviewed
Probab=22.39 E-value=51 Score=28.10 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=15.8
Q ss_pred HHHHHHHhhh---ccCCcchhhhhhh
Q psy14149 161 VSTWVTIAID---ESDFGTGLEFGLD 183 (217)
Q Consensus 161 l~t~v~iAnD---EcDfG~GLELG~d 183 (217)
-+++|.-|-+ +||||-|+|=|++
T Consensus 56 A~nRA~~a~~~~~~ad~gVGiEgGv~ 81 (173)
T PRK05074 56 ARNRVKNARQLRPEADFWVAIEAGID 81 (173)
T ss_pred HHHHHHHHHHhCCCCCEEEEEccccc
Confidence 3444444433 5999999999985
No 48
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.10 E-value=51 Score=25.41 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=33.3
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
..+.|+..|+|.. | ++ -+...|++.| .+ ++.|||--++.|-.-=..++.+.+..
T Consensus 3 i~eva~~~gvs~~----t--lR---------~Ye~~GLl~p-~r-~~~g~R~Y~~~~~~~l~~I~~lr~~G 56 (112)
T cd01282 3 IGELAARTGVSVR----S--LR---------YYEEQGLLVP-ER-SANGYRDYDEAAVDRVRQIRRLLAAG 56 (112)
T ss_pred HHHHHHHHCCCHH----H--HH---------HHHHCCCCCC-Cc-CCCCCeecCHHHHHHHHHHHHHHHcC
Confidence 4566777776553 2 22 2556799988 44 78899987766644444444555444
No 49
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=22.07 E-value=86 Score=25.34 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=15.6
Q ss_pred eeeecCccHHHHHHHHHhh
Q psy14149 36 KINPVAPNIFIFINEKLNE 54 (217)
Q Consensus 36 ~i~~vG~nlF~Av~~~l~~ 54 (217)
++..+|.|||.++..||..
T Consensus 3 ~~~~~~~~~f~~~~~~~~~ 21 (134)
T cd03198 3 ESNTAGEDIFAKFSAYIKN 21 (134)
T ss_pred hhhhhHHHHHHHHHHHHcC
Confidence 3466899999999999854
No 50
>PHA03056 putative myristoylated protein; Provisional
Probab=22.01 E-value=1.2e+02 Score=25.22 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=33.2
Q ss_pred ccccC-CCCchHHHHHHHhhcCCCCChhhhhhhhhhHHH-------HHHHHHHhh
Q psy14149 123 GYRPL-QKSDKDLETLFRQYKDPSVDTRGKLKIKSILEE-------VSTWVTIAI 169 (217)
Q Consensus 123 GYR~L-~~td~~Lkkil~~i~~a~~~~~~r~k~~~~lqe-------l~t~v~iAn 169 (217)
.||.| -.+|-+.-++|+...+.. +++........|-+ ++-|.-|||
T Consensus 55 dyrsliiksdheFsnLCKd~l~~~-~p~T~~~~IK~Il~qy~IP~S~Vvw~Pia~ 108 (165)
T PHA03056 55 DYRSLIIKSDHEFVKLCKDHAEKS-SPETQQMIIKHIYEQYLIPVSEVLLKPMMS 108 (165)
T ss_pred chhhhhhhccHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 38977 789999999999998877 77777665555544 344555554
No 51
>PF07812 TfuA: TfuA-like protein; InterPro: IPR012924 This domain consists of a group of sequences that are similar to the core of TfuA protein (Q52872 from SWISSPROT). This protein is involved in the production of trifolitoxin (TFX), a gene-encoded, post-translationally modified peptide antibiotic []. The role of TfuA in TFX synthesis is unknown, and it may be involved in other cellular processes [].
Probab=21.97 E-value=68 Score=25.99 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=27.5
Q ss_pred ccCCCCCccccCCCCchHHHHHHHhhcCCCC-Chhhhhhh
Q psy14149 116 YVKKTELGYRPLQKSDKDLETLFRQYKDPSV-DTRGKLKI 154 (217)
Q Consensus 116 ~d~k~~vGYR~L~~td~~Lkkil~~i~~a~~-~~~~r~k~ 154 (217)
.++ .+.||+||++.--|++..|+......+ +++++...
T Consensus 69 ~~p-~~~g~~~ls~plVniR~tl~~a~~~g~i~~~~~~~l 107 (120)
T PF07812_consen 69 HGP-AELGYRPLSEPLVNIRATLRAAVRAGIISEEEAAAL 107 (120)
T ss_pred ecC-cccCCccccHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 334 678999999999999999998875531 34444433
No 52
>TIGR00258 inosine/xanthosine triphosphatase.
Probab=21.94 E-value=47 Score=28.03 Aligned_cols=22 Identities=41% Similarity=0.592 Sum_probs=15.5
Q ss_pred HHHHHhhh--ccCCcchhhhhhhh
Q psy14149 163 TWVTIAID--ESDFGTGLEFGLDL 184 (217)
Q Consensus 163 t~v~iAnD--EcDfG~GLELG~dL 184 (217)
++|.-|-+ +||||-|+|=|++-
T Consensus 50 nRA~~a~~~~~ad~gVGiEgGv~~ 73 (163)
T TIGR00258 50 NRAKNAFRLLECDFSVGIEAGLDR 73 (163)
T ss_pred HHHHHHHhccCCCEEEEEeeeEee
Confidence 33333444 59999999999963
No 53
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=21.91 E-value=47 Score=30.97 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhhhccCCcchhhhhhh
Q psy14149 157 ILEEVSTWVTIAIDESDFGTGLEFGLD 183 (217)
Q Consensus 157 ~lqel~t~v~iAnDEcDfG~GLELG~d 183 (217)
-++--++.|.-|-++||||-|+|=|++
T Consensus 196 T~~GA~nRA~~a~~~ad~~VGiEgGv~ 222 (322)
T PRK01170 196 TMKGATNRAMKALKDNDYSVGIESGLF 222 (322)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeceee
Confidence 334455666667779999999999987
No 54
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=21.69 E-value=57 Score=24.69 Aligned_cols=54 Identities=11% Similarity=0.228 Sum_probs=33.2
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
..+.|+..|+|-. | + +-+...|++ |..+ ++.|||--+++|-..=..++.+.+..
T Consensus 4 i~eva~~~gvs~~----t--L---------R~ye~~Gll-~~~r-~~~g~R~Y~~~dl~~l~~I~~l~~~G 57 (102)
T cd04775 4 IGQMSRKFGVSRS----T--L---------LYYESIGLI-PSAR-SEANYRLYSEADLSRLEKIVFLQAGG 57 (102)
T ss_pred HHHHHHHHCcCHH----H--H---------HHHHHCCCC-CCCC-CCCCCeeeCHHHHHHHHHHHHHHHCC
Confidence 4567777776553 2 1 346778999 5444 66799987776644444444445554
No 55
>KOG1422|consensus
Probab=21.41 E-value=53 Score=29.22 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=26.0
Q ss_pred CceeeecCccHHHHHHHHHhhhhhcCCCCCCchhHHHHHHHHHHHH
Q psy14149 34 DCKINPVAPNIFIFINEKLNEKVKSADLASSPSKVSSLQQKLTDFA 79 (217)
Q Consensus 34 ~c~i~~vG~nlF~Av~~~l~~~~k~~~~~~~~~~~~~l~~~L~~~a 79 (217)
..+...+|.|||+.+..|+-+.....++.-....++.+ ++|.++-
T Consensus 95 ~~E~asag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L-~~Ld~yL 139 (221)
T KOG1422|consen 95 PPESASAGSDIFAKFSAFIKKSKDAANDGLEKALLKEL-EKLDDYL 139 (221)
T ss_pred CHHHHhhHHHHHHHHHHHHhCchhhccchHHHHHHHHH-HHHHHHh
Confidence 35667799999999999985443323222213344444 4444444
No 56
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=21.15 E-value=3.7e+02 Score=25.25 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=58.0
Q ss_pred CCccccCCCCchHHHHHHHhhcCCC-CChhhhhhhhhhHHHHHHHHHHhhhccCCcchhhhhhhhhccCCcchHHHHHHh
Q psy14149 121 ELGYRPLQKSDKDLETLFRQYKDPS-VDTRGKLKIKSILEEVSTWVTIAIDESDFGTGLEFGLDLFGSGIEDLHSMTKCT 199 (217)
Q Consensus 121 ~vGYR~L~~td~~Lkkil~~i~~a~-~~~~~r~k~~~~lqel~t~v~iAnDEcDfG~GLELG~dLF~~g~~~f~~~a~~l 199 (217)
++-||+|+..-..+++-|..|.... -++....-..+.++|+..-++....-+.-. =++..+.+|..-+..|+.-|..+
T Consensus 14 ~~~y~~l~~d~~~~~~~l~~l~~~~~~d~~l~~l~~~~~~e~~~~i~mL~~~Gt~~-F~~~S~~lYG~p~~~~~~~A~~i 92 (349)
T PF08014_consen 14 QFDYRPLPFDPEKLKRELYSLPIEIIEDPPLGQLYRDKIDEYDLQIDMLEARGTPD-FYYNSLRLYGEPSDKFIANAKFI 92 (349)
T ss_pred CCCCCCCCCCHHHHHHHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhcCchH-HHHHHHHHhCCCChhhhhccHHH
Confidence 5779999999999999999987322 134444455667777777777666544322 14556666776677899999999
Q ss_pred HHHH
Q psy14149 200 LGVA 203 (217)
Q Consensus 200 L~~A 203 (217)
|..+
T Consensus 93 l~~~ 96 (349)
T PF08014_consen 93 LELA 96 (349)
T ss_pred HHhh
Confidence 9888
No 57
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.07 E-value=79 Score=22.48 Aligned_cols=17 Identities=12% Similarity=0.132 Sum_probs=15.2
Q ss_pred ChhhhhhhhhhHHHHHH
Q psy14149 147 DTRGKLKIKSILEEVST 163 (217)
Q Consensus 147 ~~~~r~k~~~~lqel~t 163 (217)
+-++++++.+.||+||.
T Consensus 9 tHeqQQ~AVE~Iq~lMa 25 (60)
T COG3140 9 THEQQQKAVERIQELMA 25 (60)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 57889999999999986
Done!