Query psy14149
Match_columns 217
No_of_seqs 83 out of 85
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 20:44:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q06_A Transcriptional regulat 34.1 47 0.0016 25.2 4.3 35 107-142 20-71 (135)
2 4gl8_A Oligopeptide ABC transp 32.3 38 0.0013 30.7 4.0 34 129-163 453-486 (529)
3 3lvu_A ABC transporter, peripl 31.9 30 0.001 28.0 3.0 35 128-163 214-248 (258)
4 3pam_A Transmembrane protein; 30.9 32 0.0011 27.9 3.0 34 129-163 214-247 (259)
5 3o6p_A Peptide ABC transporter 30.8 42 0.0014 26.6 3.7 35 128-163 181-217 (229)
6 3gpv_A Transcriptional regulat 29.1 17 0.00059 28.3 1.0 55 75-145 19-73 (148)
7 3gp4_A Transcriptional regulat 27.6 20 0.00069 27.7 1.2 55 75-145 5-59 (142)
8 2jtt_C Calcyclin-binding prote 24.0 39 0.0013 20.7 1.7 28 131-159 5-32 (35)
9 3t66_A Nickel ABC transporter 23.5 73 0.0025 28.8 4.3 34 129-163 413-446 (496)
10 3rqt_A Putative uncharacterize 20.9 73 0.0025 28.7 3.7 34 129-163 411-444 (486)
11 3zs6_A Periplasmic oligopeptid 20.4 83 0.0028 28.4 4.0 34 129-163 431-464 (506)
No 1
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=34.13 E-value=47 Score=25.22 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=23.0
Q ss_pred cccceeEecccCCCCCcccc-----------------CCCCchHHHHHHHhhc
Q psy14149 107 LSGVGIVVPYVKKTELGYRP-----------------LQKSDKDLETLFRQYK 142 (217)
Q Consensus 107 fhg~GivVP~d~k~~vGYR~-----------------L~~td~~Lkkil~~i~ 142 (217)
+...|++.|..+ ++-|||- +..+-.+++.++....
T Consensus 20 ye~~Gll~p~~r-~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~~ 71 (135)
T 1q06_A 20 YEEKGLVTPPMR-SENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNLFN 71 (135)
T ss_dssp HHHTTCSCCCEE-CTTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHCCCCCCCcc-CCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhh
Confidence 445699888755 6789984 4555566666666554
No 2
>4gl8_A Oligopeptide ABC transporter oppaiv; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Borrelia burgdorferi B31}
Probab=32.30 E-value=38 Score=30.68 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=29.8
Q ss_pred CCchHHHHHHHhhcCCCCChhhhhhhhhhHHHHHH
Q psy14149 129 KSDKDLETLFRQYKDPSVDTRGKLKIKSILEEVST 163 (217)
Q Consensus 129 ~td~~Lkkil~~i~~a~~~~~~r~k~~~~lqel~t 163 (217)
-+++++.+++.+...+. ++++|.+++.++|+++.
T Consensus 453 y~n~e~D~ll~~a~~~~-D~~~R~~~~~~~q~~l~ 486 (529)
T 4gl8_A 453 YSNSEYDELLIKSDNER-DIFKRQEILKKAEAIII 486 (529)
T ss_dssp CCCHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 46889999999999887 89999999999998753
No 3
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=31.94 E-value=30 Score=28.04 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=30.5
Q ss_pred CCCchHHHHHHHhhcCCCCChhhhhhhhhhHHHHHH
Q psy14149 128 QKSDKDLETLFRQYKDPSVDTRGKLKIKSILEEVST 163 (217)
Q Consensus 128 ~~td~~Lkkil~~i~~a~~~~~~r~k~~~~lqel~t 163 (217)
..+++++.+++.....+. ++++|.+++..+|+++.
T Consensus 214 ~~~n~~~d~ll~~a~~~~-d~~~r~~~~~~~~~~l~ 248 (258)
T 3lvu_A 214 GAASPAIDAMIDRMLAAT-TEDELTAATRALDRVLT 248 (258)
T ss_dssp CCCCHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 346899999999999887 89999999999998865
No 4
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=30.92 E-value=32 Score=27.89 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=30.0
Q ss_pred CCchHHHHHHHhhcCCCCChhhhhhhhhhHHHHHH
Q psy14149 129 KSDKDLETLFRQYKDPSVDTRGKLKIKSILEEVST 163 (217)
Q Consensus 129 ~td~~Lkkil~~i~~a~~~~~~r~k~~~~lqel~t 163 (217)
.+++++..++.....+. ++++|.+++..+|+++.
T Consensus 214 ~~n~~~d~ll~~a~~~~-d~~~r~~~~~~~~~~l~ 247 (259)
T 3pam_A 214 ASDPAIDAMITAILDAH-SQVDFIAAVRALDRILI 247 (259)
T ss_dssp CCCHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 46789999999998887 89999999999998865
No 5
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=30.83 E-value=42 Score=26.64 Aligned_cols=35 Identities=6% Similarity=0.117 Sum_probs=30.1
Q ss_pred CCCchHHHHHHHhhcCC--CCChhhhhhhhhhHHHHHH
Q psy14149 128 QKSDKDLETLFRQYKDP--SVDTRGKLKIKSILEEVST 163 (217)
Q Consensus 128 ~~td~~Lkkil~~i~~a--~~~~~~r~k~~~~lqel~t 163 (217)
.-+++++.+++.....+ . ++++|.+++..+|+++.
T Consensus 181 ~~~n~~~d~l~~~~~~~~~~-d~~~r~~~~~~~~~~l~ 217 (229)
T 3o6p_A 181 RYNNAEFDKFVKAASSADAT-DPEKRWDDMLNAEKTIM 217 (229)
T ss_dssp CCCCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHhhhccC-CHHHHHHHHHHHHHHHH
Confidence 34689999999999887 7 89999999999998864
No 6
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=29.10 E-value=17 Score=28.26 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=34.5
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
..++|+..|+|.. | ++ -+...|++.|..+ ++.|||--++.|-..=..++.+.+..
T Consensus 19 I~evA~~~gvs~~----t--LR---------~Ye~~Gll~p~~r-~~~g~R~Y~~~dl~~l~~I~~lr~~G 73 (148)
T 3gpv_A 19 IGQVAKMQHLTIS----Q--IR---------YYDKQGLFPFLQR-NEKGDRIFNEEALKYLEMILCLKNTG 73 (148)
T ss_dssp HHHHHHHTTCCHH----H--HH---------HHHHTTCCTTCEE-CTTCCEEBCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCcCHH----H--HH---------HHHHCCCCCCCcC-CCCCCeecCHHHHHHHHHHHHHHHcC
Confidence 5778888877653 2 22 2556799988766 78999986655533333344444444
No 7
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.63 E-value=20 Score=27.72 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=32.1
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
..++|+..|+|.. | ++ -+...|++.|..+ ++-|||--++.|-..=..++.+.+..
T Consensus 5 I~e~A~~~gvs~~----t--LR---------~Ye~~GLl~p~~r-~~~g~R~Y~~~dl~~l~~I~~lr~~G 59 (142)
T 3gp4_A 5 IKEASEKSGVSAD----T--IR---------YYERIGLIPPIHR-NESGVRKFGAEDLRWILFTRQMRRAG 59 (142)
T ss_dssp HHHHHHHHTSCHH----H--HH---------HHHHHTSSCCCCB-CTTSCBCBCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHH----H--HH---------HHHHCCCCCCCcC-CCCCCeeeCHHHHHHHHHHHHHHHcC
Confidence 3566777766542 2 22 2456799999766 78999987655533333333334333
No 8
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=23.95 E-value=39 Score=20.71 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=21.4
Q ss_pred chHHHHHHHhhcCCCCChhhhhhhhhhHH
Q psy14149 131 DKDLETLFRQYKDPSVDTRGKLKIKSILE 159 (217)
Q Consensus 131 d~~Lkkil~~i~~a~~~~~~r~k~~~~lq 159 (217)
++.|-++++.|.+.. +++.|...+...+
T Consensus 5 ~~~l~~~fk~iY~~g-ddd~kram~KS~~ 32 (35)
T 2jtt_C 5 SEGLMNVLKKIYEDG-DDDMKRTINKAWV 32 (35)
T ss_dssp CCSHHHHHHHHHTTC-CSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC-CHHHHHHHHHHHh
Confidence 457999999999886 8888876655443
No 9
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=23.51 E-value=73 Score=28.78 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=30.0
Q ss_pred CCchHHHHHHHhhcCCCCChhhhhhhhhhHHHHHH
Q psy14149 129 KSDKDLETLFRQYKDPSVDTRGKLKIKSILEEVST 163 (217)
Q Consensus 129 ~td~~Lkkil~~i~~a~~~~~~r~k~~~~lqel~t 163 (217)
.+++++.+++.....+. ++++|.+++..+|+++.
T Consensus 413 ~~n~~~d~ll~~~~~~~-d~~~r~~~~~~~~~~l~ 446 (496)
T 3t66_A 413 VNDPELTGIIDELNRTV-DQDVRAKLTEQAAAYID 446 (496)
T ss_dssp CCCHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Confidence 36899999999999887 99999999999998854
No 10
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=20.95 E-value=73 Score=28.67 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=30.0
Q ss_pred CCchHHHHHHHhhcCCCCChhhhhhhhhhHHHHHH
Q psy14149 129 KSDKDLETLFRQYKDPSVDTRGKLKIKSILEEVST 163 (217)
Q Consensus 129 ~td~~Lkkil~~i~~a~~~~~~r~k~~~~lqel~t 163 (217)
.+++++.+++.....+. ++++|.+++..+|+++.
T Consensus 411 ~~n~~~d~ll~~a~~~~-d~~~r~~~~~~~~~~l~ 444 (486)
T 3rqt_A 411 YNNSNVDDLINQLNHTV-DVKERHNISNDIIKLSS 444 (486)
T ss_dssp CCCHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 45789999999999887 89999999999998864
No 11
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein, ABC transport system; HET: GOL; 2.10A {Burkholderia pseudomallei}
Probab=20.42 E-value=83 Score=28.37 Aligned_cols=34 Identities=6% Similarity=0.177 Sum_probs=30.1
Q ss_pred CCchHHHHHHHhhcCCCCChhhhhhhhhhHHHHHH
Q psy14149 129 KSDKDLETLFRQYKDPSVDTRGKLKIKSILEEVST 163 (217)
Q Consensus 129 ~td~~Lkkil~~i~~a~~~~~~r~k~~~~lqel~t 163 (217)
.+++++.+++.....+. ++++|.+++..+|+++.
T Consensus 431 ~~n~~~d~ll~~a~~~~-d~~~r~~~~~~~~~~l~ 464 (506)
T 3zs6_A 431 YCNPKVDSLVAEANQKL-DDGARAALLTQAHDLAM 464 (506)
T ss_dssp CCCHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHH
Confidence 46899999999999887 89999999999998854
Done!