Query psy14149
Match_columns 217
No_of_seqs 83 out of 85
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 20:44:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14149.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14149hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r8ea1 a.6.1.3 (A:3-120) Tran 54.5 3.1 0.00023 29.1 2.3 39 107-145 23-61 (118)
2 d1r8da_ a.6.1.3 (A:) Multidrug 46.7 2 0.00014 29.9 0.0 55 75-145 5-59 (109)
3 d1q06a_ a.6.1.3 (A:) Transcrip 46.5 2.1 0.00015 30.5 0.2 24 107-131 20-43 (127)
4 d1ji1a2 b.71.1.1 (A:555-637) M 45.0 16 0.0012 23.6 4.7 30 9-39 10-40 (83)
5 d1vr5a1 c.94.1.1 (A:23-557) Ol 34.7 16 0.0012 30.7 4.2 33 130-163 447-479 (535)
6 d1uqwa_ c.94.1.1 (A:) Hypothet 24.6 27 0.002 28.2 3.7 34 129-163 414-447 (487)
7 d1jeta_ c.94.1.1 (A:) Oligo-pe 23.7 31 0.0022 28.4 3.9 34 129-163 441-474 (517)
8 d1u14a_ c.51.4.3 (A:) Hypothet 22.6 12 0.00086 28.6 0.9 14 170-183 68-81 (169)
9 d1zwya1 c.51.4.3 (A:9-181) Hyp 21.6 9.3 0.00067 29.3 0.0 18 168-185 66-83 (173)
10 d1k28a1 b.40.8.1 (A:6-129) Tai 16.9 36 0.0026 24.4 2.5 19 11-29 76-94 (124)
No 1
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=54.46 E-value=3.1 Score=29.12 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=26.5
Q ss_pred cccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 107 LSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 107 fhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
+...||+.|...+++.|||.-++.|-..=..++.+.+..
T Consensus 23 Ye~~GLl~P~~~r~~~gyR~Y~~~~l~~l~~I~~lr~~g 61 (118)
T d1r8ea1 23 YDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIG 61 (118)
T ss_dssp HHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTT
T ss_pred HHHcCCcccccccCCCCcccccHHHHHHHHHHHHHHHcC
Confidence 557799999765578999988777654444444454443
No 2
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=46.67 E-value=2 Score=29.89 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=33.4
Q ss_pred HHHHHHhCCCccCCCccchHHhhhcccccccccccceeEecccCCCCCccccCCCCchHHHHHHHhhcCCC
Q psy14149 75 LTDFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYRPLQKSDKDLETLFRQYKDPS 145 (217)
Q Consensus 75 L~~~a~~~~~~l~~~~~t~~~k~R~k~vV~ktfhg~GivVP~d~k~~vGYR~L~~td~~Lkkil~~i~~a~ 145 (217)
..++|+..|+|.. | + +-+...|++.|..+ ++-|||.-+..|-.-=++++.+.+..
T Consensus 5 I~e~A~~~gvs~~----t--l---------R~Ye~~GLl~p~~r-~~~gyR~Y~~~~~~~l~~I~~lr~~G 59 (109)
T d1r8da_ 5 VKQVAEISGVSIR----T--L---------HHYDNIELLNPSAL-TDAGYRLYSDADLERLQQILFFKEIG 59 (109)
T ss_dssp HHHHHHHHSCCHH----H--H---------HHHHHTTSSCCSEE-CTTCCEEBCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHH----H--H---------HHHHHcCCcCCccc-CCcccccccHHHHHHHHHHHHHHHcC
Confidence 3567777776542 2 1 23668899999876 78999986554433223334444444
No 3
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=46.53 E-value=2.1 Score=30.53 Aligned_cols=24 Identities=29% Similarity=0.593 Sum_probs=18.7
Q ss_pred cccceeEecccCCCCCccccCCCCc
Q psy14149 107 LSGVGIVVPYVKKTELGYRPLQKSD 131 (217)
Q Consensus 107 fhg~GivVP~d~k~~vGYR~L~~td 131 (217)
+...|++.|..+ ++-|||.-+..+
T Consensus 20 Ye~~GLl~p~~r-~~~gyR~Y~~~~ 43 (127)
T d1q06a_ 20 YEEKGLVTPPMR-SENGYRTYTQQH 43 (127)
T ss_dssp HHHTTCSCCCEE-CTTSCEECCHHH
T ss_pred HHHcCCCCCCcc-CCcCcccchHHH
Confidence 567899999854 889999865555
No 4
>d1ji1a2 b.71.1.1 (A:555-637) Maltogenic amylase {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
Probab=44.99 E-value=16 Score=23.58 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCCCceEEEecc-CCCceeee
Q psy14149 9 DHLHFGYFRDCPDEAPVFIASNS-NRDCKINP 39 (217)
Q Consensus 9 ~~~H~GY~RD~P~e~Pv~V~~n~-~~~c~i~~ 39 (217)
.+-.|+|.|-..++. ++|+.|. .....++.
T Consensus 10 ~~~v~ay~R~~~~e~-vlV~~N~s~~~~~v~l 40 (83)
T d1ji1a2 10 TNKIYSYGRFDNVNR-IAVVLNNDSVSHTVNV 40 (83)
T ss_dssp TTTEEEEEEECSSCE-EEEEEECSSSCEEEEE
T ss_pred CCCEEEEEEEcCCcE-EEEEEeCCCCCEEEEe
Confidence 345899999986664 8888887 55555543
No 5
>d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA) {Thermotoga maritima [TaxId: 2336]}
Probab=34.73 E-value=16 Score=30.68 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=29.5
Q ss_pred CchHHHHHHHhhcCCCCChhhhhhhhhhHHHHHH
Q psy14149 130 SDKDLETLFRQYKDPSVDTRGKLKIKSILEEVST 163 (217)
Q Consensus 130 td~~Lkkil~~i~~a~~~~~~r~k~~~~lqel~t 163 (217)
+|+++..|+.+...+. +.++|.+.+.++|.++.
T Consensus 447 ~d~~~d~Ll~~a~~~~-d~~~r~~~~~~~~~~l~ 479 (535)
T d1vr5a1 447 ANPEVETLLDELNRSN-DDAKIKEVVAKLSEILL 479 (535)
T ss_dssp CCHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 5789999999999987 89999999999998864
No 6
>d1uqwa_ c.94.1.1 (A:) Hypothetical protein YliB {Escherichia coli [TaxId: 562]}
Probab=24.56 E-value=27 Score=28.20 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=29.8
Q ss_pred CCchHHHHHHHhhcCCCCChhhhhhhhhhHHHHHH
Q psy14149 129 KSDKDLETLFRQYKDPSVDTRGKLKIKSILEEVST 163 (217)
Q Consensus 129 ~td~~Lkkil~~i~~a~~~~~~r~k~~~~lqel~t 163 (217)
-.++++..++.+...+. ++++|.+.+.++|+++.
T Consensus 414 ~~~~~~d~l~~~a~~~~-d~~~r~~~~~~~~~~l~ 447 (487)
T d1uqwa_ 414 YSNKQVDDFLAQALKTN-DPAEKTRLYKAAQDIIW 447 (487)
T ss_dssp CCCHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 46789999999999887 89999999999998864
No 7
>d1jeta_ c.94.1.1 (A:) Oligo-peptide binding protein (OPPA) {Salmonella typhimurium [TaxId: 90371]}
Probab=23.67 E-value=31 Score=28.41 Aligned_cols=34 Identities=9% Similarity=0.091 Sum_probs=28.9
Q ss_pred CCchHHHHHHHhhcCCCCChhhhhhhhhhHHHHHH
Q psy14149 129 KSDKDLETLFRQYKDPSVDTRGKLKIKSILEEVST 163 (217)
Q Consensus 129 ~td~~Lkkil~~i~~a~~~~~~r~k~~~~lqel~t 163 (217)
-.++++.+++.+...+. +.++|.+.+..+|+++.
T Consensus 441 ~~~~e~d~li~~a~~~~-d~~~r~~~~~~~~~~~~ 474 (517)
T d1jeta_ 441 YKSPAFDKLIADTLKVA-DDTQRSELYAKAEQQLD 474 (517)
T ss_dssp CCCHHHHHHHHHTTTSC-CHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 35789999999998887 89999999998887754
No 8
>d1u14a_ c.51.4.3 (A:) Hypothetical protein YjjX {Salmonella typhimurium [TaxId: 90371]}
Probab=22.58 E-value=12 Score=28.60 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=12.4
Q ss_pred hccCCcchhhhhhh
Q psy14149 170 DESDFGTGLEFGLD 183 (217)
Q Consensus 170 DEcDfG~GLELG~d 183 (217)
-+||||-|||=|++
T Consensus 68 ~~ad~gVGiEgGv~ 81 (169)
T d1u14a_ 68 PQADFWVAIEAGID 81 (169)
T ss_dssp TTCSEEEEEEEEEE
T ss_pred CCCCEEEEeeccCc
Confidence 47999999999975
No 9
>d1zwya1 c.51.4.3 (A:9-181) Hypothetical protein VC0702 {Vibrio cholerae [TaxId: 666]}
Probab=21.60 E-value=9.3 Score=29.34 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=14.3
Q ss_pred hhhccCCcchhhhhhhhh
Q psy14149 168 AIDESDFGTGLEFGLDLF 185 (217)
Q Consensus 168 AnDEcDfG~GLELG~dLF 185 (217)
+.++||||-|+|=|++-+
T Consensus 66 ~~~~ad~gVGiEgGv~~~ 83 (173)
T d1zwya1 66 RHPGAEYYVGLEAGIEEN 83 (173)
T ss_dssp HSTTCSEEEEEEEEEETT
T ss_pred hCCCCCEEEEEeeeEeec
Confidence 346799999999998643
No 10
>d1k28a1 b.40.8.1 (A:6-129) Tail-associated lysozyme gp5, N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Probab=16.94 E-value=36 Score=24.37 Aligned_cols=19 Identities=16% Similarity=0.238 Sum_probs=15.0
Q ss_pred eEEEEEecCCCCCceEEEe
Q psy14149 11 LHFGYFRDCPDEAPVFIAS 29 (217)
Q Consensus 11 ~H~GY~RD~P~e~Pv~V~~ 29 (217)
.=+|||+|--.+.|+++++
T Consensus 76 ~V~GfFlDgd~q~PvI~G~ 94 (124)
T d1k28a1 76 RVYGHFLDKWKTNGIVLGT 94 (124)
T ss_dssp EEEEEESSSSSCCEEEEEE
T ss_pred EEEEEEecCCcccCEEEEE
Confidence 4589999984456999986
Done!