RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14149
(217 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 3e-04
Identities = 37/200 (18%), Positives = 58/200 (29%), Gaps = 63/200 (31%)
Query: 20 PDEAPVFIASNSNRDCKINPVAPNIFIF---------INEKLNEKVKSADLASSPSKVSS 70
P V I+ +N + +N L K K A S++
Sbjct: 361 PAGKQVEIS-------LVN--GAKNLVVSGPPQSLYGLNLTL-RKAK-APSGLDQSRIPF 409
Query: 71 LQQKL---TDF----A--HGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTE 121
++KL F + H H L P + + V + I +P V T
Sbjct: 410 SERKLKFSNRFLPVASPFHSH---LLVPASDLINKDLVKNNVS--FNAKDIQIP-VYDTF 463
Query: 122 LGYRPLQKSDKDL-ETLFRQYKDPSVDTRGKLKIKSILEEVSTWVTIAIDES----DFGT 176
G L+ + E + I+ W T ++ DFG
Sbjct: 464 DGSD-LRVLSGSISERIVDC----------------IIRLPVKWETTTQFKATHILDFGP 506
Query: 177 GLEFGL-DLF-----GSGIE 190
G GL L G+G+
Sbjct: 507 GGASGLGVLTHRNKDGTGVR 526
Score = 32.3 bits (73), Expect = 0.14
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 27/99 (27%)
Query: 125 RPLQKSDKDLETLF----------RQYKD--------PSVDTRGKLKIKSILEEVSTW-- 164
RPL S LE + Q ++ P+ + + E V +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 165 -VTIAIDESDFGTG---LEFGLDLFGSGI---EDLHSMT 196
V+ ++ S G L L F + D+H++
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA 105
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.011
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 128 QKSDKDLETLFRQYKDPSVDTRGKLKIKSILE 159
+++ K L+ + Y D D+ L IK+ +E
Sbjct: 19 KQALKKLQASLKLYAD---DSAPALAIKATME 47
Score = 27.2 bits (59), Expect = 2.9
Identities = 5/18 (27%), Positives = 7/18 (38%), Gaps = 4/18 (22%)
Query: 15 YFRDCPDEAPVFIASNSN 32
Y D AP +A +
Sbjct: 32 Y---ADDSAPA-LAIKAT 45
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv
T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A
{Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Length = 451
Score = 30.3 bits (68), Expect = 0.53
Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 29/168 (17%)
Query: 39 PVAPNIFIFINEKLNE-KVK-SADLASSPSKVSSLQQKLTDF-------AHGHKIDLDAP 89
+ F F + ++E K + L +S VS+ L+ F +ID AP
Sbjct: 228 SASWAFFTFSPKAMSELKDAATKTLDASTKFVSTDDA-LSAFIWKSASRVRLERIDGSAP 286
Query: 90 -KLSSVVRARKAKTVCKGLSGVGIVVPYVKKT--ELGYRPLQK----------------S 130
+ V AR A V G+ + Y T E+ L
Sbjct: 287 TEFCRAVDARPAMGVSNNYPGLLQNMTYHNSTIGEIANESLGATASRLRSELDPASMRQR 346
Query: 131 DKDLETLFRQYKDPSVDTRGKLKIKSILEEVSTWVTIAIDESDFGTGL 178
+ L T D S + S +S+W + + + DFG GL
Sbjct: 347 TRGLATYLHNNPDKSNVSLTADADPSTSVMLSSWAKVGLWDYDFGLGL 394
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin,
neddylation, DCN-1, center for eukaryotic structural
genomics, PSI; HET: CSO MSE; 1.30A {Galdieria
sulphuraria}
Length = 199
Score = 29.2 bits (65), Expect = 0.85
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 128 QKSDKDLETLFRQYKDPSVDT 148
+ K + LF+ YK+P +
Sbjct: 3 RADKKAILELFQTYKEPLGNY 23
>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A
{Homo sapiens} PDB: 3tdz_A
Length = 200
Score = 28.5 bits (63), Expect = 1.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 130 SDKDLETLFRQYKDPS 145
S K LE L+ +YKDP
Sbjct: 2 SRKKLEQLYNRYKDPQ 17
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef
and EAL domains, structural genomics, PSI-2; 1.80A
{Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Length = 294
Score = 27.8 bits (63), Expect = 2.6
Identities = 8/13 (61%), Positives = 10/13 (76%), Gaps = 2/13 (15%)
Query: 165 VTIAIDESDFGTG 177
V +A+D DFGTG
Sbjct: 177 VRLALD--DFGTG 187
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, signaling protein;
HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Length = 259
Score = 27.4 bits (62), Expect = 3.1
Identities = 7/13 (53%), Positives = 9/13 (69%), Gaps = 2/13 (15%)
Query: 165 VTIAIDESDFGTG 177
+A+D DFGTG
Sbjct: 153 AGLALD--DFGTG 163
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase;
EAL-domain, structural genomics, PSI-2; 2.00A {Listeria
monocytogenes}
Length = 235
Score = 27.5 bits (62), Expect = 3.2
Identities = 6/13 (46%), Positives = 6/13 (46%), Gaps = 2/13 (15%)
Query: 165 VTIAIDESDFGTG 177
IAID D G
Sbjct: 142 YHIAID--DVSCG 152
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET:
EPE; 2.50A {Pseudomonas aeruginosa}
Length = 400
Score = 27.7 bits (62), Expect = 3.5
Identities = 6/13 (46%), Positives = 8/13 (61%), Gaps = 2/13 (15%)
Query: 165 VTIAIDESDFGTG 177
+A+D DFG G
Sbjct: 290 CGLAMD--DFGAG 300
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain,
C-DI-GMP receptor, lyase; 2.00A {Pseudomonas
fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Length = 430
Score = 27.1 bits (61), Expect = 4.5
Identities = 2/13 (15%), Positives = 6/13 (46%), Gaps = 2/13 (15%)
Query: 165 VTIAIDESDFGTG 177
++++ FG
Sbjct: 337 FSLSLQ--RFGGR 347
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase;
HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB:
3hv9_A
Length = 268
Score = 27.0 bits (61), Expect = 4.7
Identities = 5/14 (35%), Positives = 5/14 (35%), Gaps = 2/14 (14%)
Query: 165 VTIAIDESDFGTGL 178
AI FG L
Sbjct: 167 CQAAIS--QFGCSL 178
>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain,
hydrolase, signaling PR; HET: C2E FMN; 2.05A {Klebsiella
pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A*
2kb2_A*
Length = 413
Score = 27.3 bits (61), Expect = 4.8
Identities = 7/13 (53%), Positives = 9/13 (69%), Gaps = 2/13 (15%)
Query: 165 VTIAIDESDFGTG 177
+ +AID DFG G
Sbjct: 305 MKLAID--DFGAG 315
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase;
2.99A {Pseudomonas aeruginosa PAO1}
Length = 437
Score = 27.0 bits (61), Expect = 5.5
Identities = 4/13 (30%), Positives = 4/13 (30%), Gaps = 2/13 (15%)
Query: 165 VTIAIDESDFGTG 177
AI FG
Sbjct: 336 CQAAIS--QFGCS 346
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 8.0
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 26/82 (31%)
Query: 18 DCPDEAPVFIASNSNRDCKINPVAPNIF-----IFIN----------EKLNEKVKSADLA 62
D P E NP +I + +KL ++S+
Sbjct: 317 DLPREV-----------LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 63 SSPSKVSSLQQKLTDFAHGHKI 84
P++ + +L+ F I
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHI 387
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 26.3 bits (58), Expect = 9.2
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 7 GKDHLHFGYFRDCPDEAPVFIAS 29
G + +H G +++ D+ + AS
Sbjct: 41 GGEDIHVGLYKEPVDQDEIREAS 63
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Length = 98
Score = 25.2 bits (55), Expect = 9.5
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 77 DFAHGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPY 116
+K+DL P+ + VV + K + + +V
Sbjct: 61 TLNSENKVDLTNPQYTVVVE------IIKAVCCLSVVKSG 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,294,353
Number of extensions: 188749
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 20
Length of query: 217
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 127
Effective length of database: 4,188,903
Effective search space: 531990681
Effective search space used: 531990681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)