RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14149
         (217 letters)



>d1u2xa_ c.72.1.3 (A:) ADP-specific phosphofructokinase
          {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 450

 Score = 27.1 bits (60), Expect = 2.0
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 20 PDEAPVFIASNSNRDCKINPVAPNIFIFINEKLNEKVKSADLASSPSKVSSLQQKLTDFA 79
          P+   ++ A N+N D  +      I   IN    ++VK       P +++     +    
Sbjct: 3  PEHLSIYTAYNANIDAIVKLNQETIQNLINAFDPDEVKRRIEE-YPREINEPIDFVARLV 61

Query: 80 HGHK 83
          H  K
Sbjct: 62 HTLK 65


>d1cexa_ c.69.1.30 (A:) Cutinase {Fungus (Fusarium solani), subsp.
           pisi [TaxId: 169388]}
          Length = 197

 Score = 26.5 bits (58), Expect = 2.2
 Identities = 6/18 (33%), Positives = 7/18 (38%)

Query: 12  HFGYFRDCPDEAPVFIAS 29
           H  Y  D    AP F+  
Sbjct: 172 HLAYGPDARGPAPEFLIE 189


>d2gdta1 d.346.1.1 (A:2-116) Nsp1 {SARS coronavirus [TaxId: 227859]}
          Length = 115

 Score = 25.8 bits (56), Expect = 2.2
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 80  HGHKIDLDAPKLSSVVRARKAKTVCKGLSGVGIVVPYVKKTELGYR 125
           HGHK+     ++  +   R   T+       G++VP+V +T + YR
Sbjct: 69  HGHKVVELVAEMDGIQYGRSGITL-------GVLVPHVGETPIAYR 107


>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine
          methyltransferase {Red algae (Galdieria sulphuraria)
          [TaxId: 130081]}
          Length = 282

 Score = 25.9 bits (55), Expect = 3.8
 Identities = 6/23 (26%), Positives = 13/23 (56%)

Query: 7  GKDHLHFGYFRDCPDEAPVFIAS 29
          G + +H G +++  D+  +  AS
Sbjct: 26 GGEDIHVGLYKEPVDQDEIREAS 48


>d1g66a_ c.69.1.30 (A:) Acetylxylan esterase {Penicillium
           purpurogenum [TaxId: 28575]}
          Length = 207

 Score = 25.8 bits (56), Expect = 4.2
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 12  HFGYFRDCPDEAPVFIAS 29
           H GY  +   +A  F+ S
Sbjct: 187 HQGYGSEYGSQALAFVKS 204


>d1qoza_ c.69.1.30 (A:) Acetylxylan esterase {Trichoderma reesei
           [TaxId: 51453]}
          Length = 207

 Score = 25.4 bits (55), Expect = 4.6
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 2   IIVSTGKDHL-HFGYFRDCPDEAPVFIAS 29
               TG D   H GY ++   +A  FI S
Sbjct: 176 PYCCTGNDPNVHQGYGQEYGQQALAFINS 204


>d1hfxa_ d.2.1.2 (A:) alpha-Lactalbumin {Guinea pig (Cavia
           porcellus) [TaxId: 10141]}
          Length = 123

 Score = 24.8 bits (54), Expect = 5.0
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 159 EEVSTWVTIAIDESDFGT 176
             +  W+ I    S + T
Sbjct: 21  ITLPEWLCIIFHISGYDT 38


>d1qqya_ d.2.1.2 (A:) Lysozyme {Dog (Canis familiaris), milk [TaxId:
           9615]}
          Length = 130

 Score = 24.9 bits (54), Expect = 5.6
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 159 EEVSTWVTIAIDESDFGTGLEFGLDLFGS---GIEDLHSMTKC 198
             ++ WV +A  ES+F T    G +  GS   GI  L+S   C
Sbjct: 24  YSLANWVCMAEYESNFNTQAFNGRNSNGSSDYGIFQLNSKWWC 66


>d1b9oa_ d.2.1.2 (A:) alpha-Lactalbumin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 123

 Score = 24.5 bits (53), Expect = 7.3
 Identities = 2/18 (11%), Positives = 5/18 (27%)

Query: 159 EEVSTWVTIAIDESDFGT 176
             +   +      S + T
Sbjct: 21  IALPELICTMFHTSGYDT 38


>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 69

 Score = 23.3 bits (50), Expect = 9.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 43 NIFIFINEKLNEKVKSADLASSPSKVSSLQQKLTDFA 79
          N F    +KL E++K+    ++P +++ L  K +DFA
Sbjct: 9  NTFTEYKKKLAERLKAKLPDATPKELAKLVNKRSDFA 45


>d1yroa1 d.2.1.2 (A:1-123) alpha-Lactalbumin {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 123

 Score = 24.0 bits (52), Expect = 9.3
 Identities = 3/19 (15%), Positives = 6/19 (31%)

Query: 159 EEVSTWVTIAIDESDFGTG 177
             +  W  +    S + T 
Sbjct: 21  ISLLEWACVLFHTSGYDTQ 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0382    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 796,081
Number of extensions: 35700
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 12
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.4 bits)